AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88913

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88913.t1 MTR_1g098450 81.902 326 23 4 1 326 1 290 0.0 526
MS.gene88913.t1 MTR_6g043890 28.146 302 187 10 12 308 15 291 2.93e-23 98.6
MS.gene88913.t1 MTR_1g108780 27.597 308 183 9 30 326 16 294 1.87e-22 97.8
MS.gene88913.t1 MTR_7g050590 26.059 307 190 8 26 322 1 280 2.82e-22 95.1
MS.gene88913.t1 MTR_3g098790 26.154 325 196 12 12 326 13 303 6.03e-21 92.0
MS.gene88913.t1 MTR_5g044670 22.910 323 210 9 12 326 16 307 4.18e-20 89.7
MS.gene88913.t1 MTR_7g050560 26.498 317 188 10 12 322 13 290 4.31e-20 89.4
MS.gene88913.t1 MTR_1g035460 26.861 309 168 9 41 325 16 290 7.17e-20 89.7
MS.gene88913.t1 MTR_4g119990 25.449 334 188 11 12 321 15 311 6.66e-16 78.2
MS.gene88913.t1 MTR_6g061070 24.437 311 213 8 21 323 27 323 5.59e-15 75.9
MS.gene88913.t1 MTR_1g035640 27.055 292 173 9 34 323 28 281 3.94e-13 70.1
MS.gene88913.t1 MTR_7g050580 35.398 113 67 3 216 322 178 290 2.02e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88913.t1 AT4G33280 26.846 298 173 15 43 325 55 322 3.31e-12 67.0

Find 48 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTTTGAGTAGTAAATTT+TGG 0.102919 1.1:+70832723 MS.gene88913:CDS
AACAGGAGAGTGCTATGTTT+TGG 0.285292 1.1:+70834677 MS.gene88913:CDS
TGATAAAACCACATGGCTAT+TGG 0.295086 1.1:+70832781 MS.gene88913:CDS
TTGTTGAGGCGAAGAGATTT+TGG 0.299523 1.1:+70834701 MS.gene88913:CDS
AGACGATCCCCTAATGTTAT+AGG 0.308510 1.1:-70834291 None:intergenic
AGCCTTCTTGCTGAGATATC+TGG 0.323467 1.1:+70833097 MS.gene88913:CDS
GACGATCCCCTAATGTTATA+GGG 0.333503 1.1:-70834290 None:intergenic
GAGAAGTCCCCTATAACATT+AGG 0.337292 1.1:+70834282 MS.gene88913:CDS
AGAAGTCCCCTATAACATTA+GGG 0.380144 1.1:+70834283 MS.gene88913:CDS
TCAGGAAGCTGAAGACATAT+AGG 0.408366 1.1:-70832761 None:intergenic
AGAAGGCTGCGATAGCGTTT+AGG 0.433134 1.1:-70833082 None:intergenic
CAGGAAGCTGAAGACATATA+GGG 0.442300 1.1:-70832760 None:intergenic
GTTGTGACTGCGGCAAGCCT+TGG 0.444590 1.1:-70834375 None:intergenic
AGCGTTTAGGCTCCTCTTGT+TGG 0.449128 1.1:-70833069 None:intergenic
AAACCACATGGCTATTGGAT+TGG 0.454515 1.1:+70832786 MS.gene88913:CDS
CTTAACAACACGTCAACAAC+AGG 0.469084 1.1:+70834660 MS.gene88913:CDS
AAATATGCTGATGGGATATG+AGG 0.485987 1.1:-70832912 None:intergenic
TTTAGGCTCCTCTTGTTGGT+TGG 0.495993 1.1:-70833065 None:intergenic
TGAATGTAGCACTGGAGCAT+TGG 0.496562 1.1:+70834346 MS.gene88913:CDS
TTAAAGCTTAACTCTTGCAA+TGG 0.504842 1.1:+70834733 MS.gene88913:CDS
CATTTCTTTGAATGTGTGAT+GGG 0.511289 1.1:-70834421 None:intergenic
ACGGGCATTGTCATTTGAGA+TGG 0.514098 1.1:-70833127 None:intergenic
GGATAGGTTAAATATGCTGA+TGG 0.514655 1.1:-70832921 None:intergenic
GGAAAACAAGGAGGATAGCA+TGG 0.518866 1.1:-70832978 None:intergenic
TCATCAAATCGTCGTTTCGA+AGG 0.518996 1.1:-70832697 None:intergenic
ACACATTCAAAGAAATGTGC+TGG 0.535216 1.1:+70834427 MS.gene88913:CDS
GGTTTCCCATGGGGAAAACA+AGG 0.540143 1.1:-70832990 None:intergenic
CTCATGTGTTATTAAACAAG+TGG 0.542298 1.1:+70832825 MS.gene88913:CDS
ACATTTCTTTGAATGTGTGA+TGG 0.547251 1.1:-70834422 None:intergenic
GAAGCTATTGAATGTAGCAC+TGG 0.555894 1.1:+70834338 MS.gene88913:CDS
AGATGATAATAAGAAACTGC+AGG 0.560494 1.1:-70833025 None:intergenic
GAAGAAAACCAACCAACAAG+AGG 0.567197 1.1:+70833057 MS.gene88913:CDS
GATAGGTTAAATATGCTGAT+GGG 0.588873 1.1:-70832920 None:intergenic
TGTGTTATTAAACAAGTGGA+AGG 0.590126 1.1:+70832829 MS.gene88913:CDS
GAAAACAAGGAGGATAGCAT+GGG 0.593037 1.1:-70832977 None:intergenic
ACGGACAATAAATTGAAACT+AGG 0.597678 1.1:+70834793 MS.gene88913:CDS
GTCCAGATATCTCAGCAAGA+AGG 0.611666 1.1:-70833099 None:intergenic
ACGATCCCCTAATGTTATAG+GGG 0.623647 1.1:-70834289 None:intergenic
GATCGTCTACTATGAAACAA+AGG 0.633191 1.1:+70834306 MS.gene88913:CDS
GAAGTCCCCTATAACATTAG+GGG 0.636342 1.1:+70834284 MS.gene88913:CDS
TGGAGCATTGGAGAGAGCCA+AGG 0.647399 1.1:+70834358 MS.gene88913:CDS
GTCTACTATGAAACAAAGGA+AGG 0.652860 1.1:+70834310 MS.gene88913:CDS
CGTGTTGTTAAGAAGTTGCG+CGG 0.667200 1.1:-70834649 None:intergenic
TGAAAGATTTGTTGTGACTG+CGG 0.679005 1.1:-70834385 None:intergenic
TTTCCAATCCAATAGCCATG+TGG 0.687940 1.1:-70832789 None:intergenic
AGCTTCCTGATAAAACCACA+TGG 0.693997 1.1:+70832774 MS.gene88913:CDS
TTCCCATGGGGAAAACAAGG+AGG 0.706970 1.1:-70832987 None:intergenic
AAAACAAGGAGGATAGCATG+GGG 0.772194 1.1:-70832976 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAACAACTTAATTTA+AGG - chr1.1:70833226-70833245 None:intergenic 10.0%
!!! ACTTAAATTATTAGTTTTAT+CGG + chr1.1:70833542-70833561 MS.gene88913:intron 10.0%
!!! TAAGTTGTTTTTAATTTTTA+CGG + chr1.1:70833231-70833250 MS.gene88913:intron 10.0%
!! CTAATGATTAAAAAATCATA+GGG + chr1.1:70833413-70833432 MS.gene88913:intron 15.0%
!! TCTAATGATTAAAAAATCAT+AGG + chr1.1:70833412-70833431 MS.gene88913:intron 15.0%
!!! CAATTATTATAACTTGTTAT+TGG - chr1.1:70834520-70834539 None:intergenic 15.0%
!! CTTAATTTAAGGAAACAAAA+CGG - chr1.1:70833215-70833234 None:intergenic 20.0%
!! TTAATTTAAGGAAACAAAAC+GGG - chr1.1:70833214-70833233 None:intergenic 20.0%
!!! AAATATCTTTTAATGATGGT+TGG + chr1.1:70834758-70834777 MS.gene88913:CDS 20.0%
!!! ATCAATAATTTTGCAAAACT+TGG - chr1.1:70832669-70832688 None:intergenic 20.0%
!!! GCATCTCAAATTATTTTAAT+AGG + chr1.1:70834251-70834270 MS.gene88913:intron 20.0%
! AAAATAGTAGCAATACAATC+CGG + chr1.1:70833266-70833285 MS.gene88913:intron 25.0%
! ACAACTTCAAAAAAAAGTCT+TGG - chr1.1:70834850-70834869 None:intergenic 25.0%
! ATAAAAATCTGCATACTCAA+CGG - chr1.1:70833149-70833168 None:intergenic 25.0%
! ATATCCACATGTAAAATATG+TGG + chr1.1:70834090-70834109 MS.gene88913:intron 25.0%
! ATCAAAAACTACAACTTTGA+TGG + chr1.1:70834186-70834205 MS.gene88913:intron 25.0%
! ATGATAAAAACTGTCAAAAC+AGG + chr1.1:70834621-70834640 MS.gene88913:intron 25.0%
! GATTAAAAAATCATAGGGTA+GGG + chr1.1:70833418-70833437 MS.gene88913:intron 25.0%
! GCTTAACAATGATATATTTG+AGG - chr1.1:70833627-70833646 None:intergenic 25.0%
! TAATTTAAGGAAACAAAACG+GGG - chr1.1:70833213-70833232 None:intergenic 25.0%
! TGATTAAAAAATCATAGGGT+AGG + chr1.1:70833417-70833436 MS.gene88913:intron 25.0%
! TTAAAATTGTGGGATGAAAT+GGG - chr1.1:70833973-70833992 None:intergenic 25.0%
! TTAACTAAGACAGCTATATA+CGG - chr1.1:70833318-70833337 None:intergenic 25.0%
!! AAAGCTGGTATTTAAAATTG+TGG - chr1.1:70833984-70834003 None:intergenic 25.0%
!! AAGCTGGTATTTAAAATTGT+GGG - chr1.1:70833983-70834002 None:intergenic 25.0%
!! ACTTTTATGCATAACAAAGT+TGG - chr1.1:70833790-70833809 None:intergenic 25.0%
!! GGACAAATATCTTTTAATGA+TGG + chr1.1:70834754-70834773 MS.gene88913:CDS 25.0%
!! TTTAAAATTGTGGGATGAAA+TGG - chr1.1:70833974-70833993 None:intergenic 25.0%
!!! AGCTTTGAGTAGTAAATTTT+GGG + chr1.1:70832724-70832743 MS.gene88913:CDS 25.0%
ACATTTCTTTGAATGTGTGA+TGG - chr1.1:70834425-70834444 None:intergenic 30.0%
ACGGACAATAAATTGAAACT+AGG + chr1.1:70834793-70834812 MS.gene88913:CDS 30.0%
AGATGATAATAAGAAACTGC+AGG - chr1.1:70833028-70833047 None:intergenic 30.0%
CAGTTTCATCAAAAATGGAT+AGG - chr1.1:70832940-70832959 None:intergenic 30.0%
CATTTCTTTGAATGTGTGAT+GGG - chr1.1:70834424-70834443 None:intergenic 30.0%
GATAGGTTAAATATGCTGAT+GGG - chr1.1:70832923-70832942 None:intergenic 30.0%
GTCATGTTGCTATAGAAATT+TGG - chr1.1:70834146-70834165 None:intergenic 30.0%
TAAAAATCTGCATACTCAAC+GGG - chr1.1:70833148-70833167 None:intergenic 30.0%
TTAAAGCTTAACTCTTGCAA+TGG + chr1.1:70834733-70834752 MS.gene88913:CDS 30.0%
! AGAACCACATATTTTACATG+TGG - chr1.1:70834097-70834116 None:intergenic 30.0%
! CTCATGTGTTATTAAACAAG+TGG + chr1.1:70832825-70832844 MS.gene88913:CDS 30.0%
! TGTGTTATTAAACAAGTGGA+AGG + chr1.1:70832829-70832848 MS.gene88913:CDS 30.0%
!! CTATCCATTTTTGATGAAAC+TGG + chr1.1:70832938-70832957 MS.gene88913:CDS 30.0%
!!! ACCTCTTTTTTTAGGTTTTG+CGG - chr1.1:70833173-70833192 None:intergenic 30.0%
!!! ACTCATGTACCTCTTTTTTT+AGG - chr1.1:70833181-70833200 None:intergenic 30.0%
!!! CAGCTTTGAGTAGTAAATTT+TGG + chr1.1:70832723-70832742 MS.gene88913:CDS 30.0%
!!! TCAAGTTTTTGATTTGTTGC+CGG - chr1.1:70833288-70833307 None:intergenic 30.0%
AAATATGCTGATGGGATATG+AGG - chr1.1:70832915-70832934 None:intergenic 35.0%
ACACATTCAAAGAAATGTGC+TGG + chr1.1:70834427-70834446 MS.gene88913:CDS 35.0%
ACCGCAAAACCTAAAAAAAG+AGG + chr1.1:70833169-70833188 MS.gene88913:CDS 35.0%
AGAAGTCCCCTATAACATTA+GGG + chr1.1:70834283-70834302 MS.gene88913:CDS 35.0%
ATGTGCATTAGAAGTCATGA+GGG - chr1.1:70833760-70833779 None:intergenic 35.0%
CTATAGAAGGCAAACCAATA+TGG - chr1.1:70833352-70833371 None:intergenic 35.0%
GATCGTCTACTATGAAACAA+AGG + chr1.1:70834306-70834325 MS.gene88913:CDS 35.0%
GGATAGGTTAAATATGCTGA+TGG - chr1.1:70832924-70832943 None:intergenic 35.0%
GTAAGTTTGTGCTACATTTC+TGG + chr1.1:70834449-70834468 MS.gene88913:intron 35.0%
GTCTACTATGAAACAAAGGA+AGG + chr1.1:70834310-70834329 MS.gene88913:CDS 35.0%
TAGCTGTCTTAGTTAATTCG+TGG + chr1.1:70833322-70833341 MS.gene88913:intron 35.0%
TATGTGCATTAGAAGTCATG+AGG - chr1.1:70833761-70833780 None:intergenic 35.0%
TGATAAAACCACATGGCTAT+TGG + chr1.1:70832781-70832800 MS.gene88913:CDS 35.0%
TTGCAAGCTTTCAAATGGAT+GGG - chr1.1:70833659-70833678 None:intergenic 35.0%
! CATTTTTGATGAAACTGGCA+CGG + chr1.1:70832943-70832962 MS.gene88913:CDS 35.0%
! TAATTCGTGGACTACCATAT+TGG + chr1.1:70833335-70833354 MS.gene88913:intron 35.0%
! TGGTTGGAAGAATTTTGTCA+CGG + chr1.1:70834774-70834793 MS.gene88913:CDS 35.0%
!! TGAAAGATTTGTTGTGACTG+CGG - chr1.1:70834388-70834407 None:intergenic 35.0%
!! TTCAAATGGATGGGTTAAGT+GGG - chr1.1:70833650-70833669 None:intergenic 35.0%
!! TTTCAAATGGATGGGTTAAG+TGG - chr1.1:70833651-70833670 None:intergenic 35.0%
!!! AACTGCAGGTTTTGTTGTTT+TGG - chr1.1:70833014-70833033 None:intergenic 35.0%
!!! AATAGCCATGTGGTTTTATC+AGG - chr1.1:70832782-70832801 None:intergenic 35.0%
!!! TATTAGTTTTATCGGCGTGT+CGG + chr1.1:70833550-70833569 MS.gene88913:intron 35.0%
!!! TTGTTGTTTTGGTTTCCCAT+GGG - chr1.1:70833003-70833022 None:intergenic 35.0%
!!! TTTGTTGTTTTGGTTTCCCA+TGG - chr1.1:70833004-70833023 None:intergenic 35.0%
AAAACAAGGAGGATAGCATG+GGG - chr1.1:70832979-70832998 None:intergenic 40.0%
AAACCACATGGCTATTGGAT+TGG + chr1.1:70832786-70832805 MS.gene88913:CDS 40.0%
ACGAACAATTACTTGTCGAG+CGG + chr1.1:70833855-70833874 MS.gene88913:intron 40.0%
ACGATCCCCTAATGTTATAG+GGG - chr1.1:70834292-70834311 None:intergenic 40.0%
AGACGATCCCCTAATGTTAT+AGG - chr1.1:70834294-70834313 None:intergenic 40.0%
AGCTTCCTGATAAAACCACA+TGG + chr1.1:70832774-70832793 MS.gene88913:CDS 40.0%
CAGGAAGCTGAAGACATATA+GGG - chr1.1:70832763-70832782 None:intergenic 40.0%
CCAACGAGTTTGAACATAAG+TGG + chr1.1:70833379-70833398 MS.gene88913:intron 40.0%
CCACTTATGTTCAAACTCGT+TGG - chr1.1:70833382-70833401 None:intergenic 40.0%
CGTGCCAGTTTCATCAAAAA+TGG - chr1.1:70832945-70832964 None:intergenic 40.0%
CTCGACAAGTAATTGTTCGT+TGG - chr1.1:70833855-70833874 None:intergenic 40.0%
CTGCATCCTTCCTCAATTAA+TGG - chr1.1:70833921-70833940 None:intergenic 40.0%
CTTAACAACACGTCAACAAC+AGG + chr1.1:70834660-70834679 MS.gene88913:CDS 40.0%
GAAAACAAGGAGGATAGCAT+GGG - chr1.1:70832980-70832999 None:intergenic 40.0%
GAAGAAAACCAACCAACAAG+AGG + chr1.1:70833057-70833076 MS.gene88913:CDS 40.0%
GAAGCTATTGAATGTAGCAC+TGG + chr1.1:70834338-70834357 MS.gene88913:CDS 40.0%
GAAGTCCCCTATAACATTAG+GGG + chr1.1:70834284-70834303 MS.gene88913:CDS 40.0%
GACGATCCCCTAATGTTATA+GGG - chr1.1:70834293-70834312 None:intergenic 40.0%
GAGAAGTCCCCTATAACATT+AGG + chr1.1:70834282-70834301 MS.gene88913:CDS 40.0%
GGCAGTGAGCAAAATTACAA+CGG - chr1.1:70833900-70833919 None:intergenic 40.0%
GTCATGAGGGGAATTTAACA+AGG - chr1.1:70833747-70833766 None:intergenic 40.0%
GTCTCACTTGAGACATGTTT+GGG + chr1.1:70834040-70834059 MS.gene88913:intron 40.0%
GTCTGTTGCAAGCTTTCAAA+TGG - chr1.1:70833664-70833683 None:intergenic 40.0%
GTTGCAAGCTTTCAAATGGA+TGG - chr1.1:70833660-70833679 None:intergenic 40.0%
TCACTGCCATTAATTGAGGA+AGG + chr1.1:70833912-70833931 MS.gene88913:intron 40.0%
TCAGGAAGCTGAAGACATAT+AGG - chr1.1:70832764-70832783 None:intergenic 40.0%
TCATCAAATCGTCGTTTCGA+AGG - chr1.1:70832700-70832719 None:intergenic 40.0%
TCTCACTTGAGACATGTTTG+GGG + chr1.1:70834041-70834060 MS.gene88913:intron 40.0%
TGTGCATTAGAAGTCATGAG+GGG - chr1.1:70833759-70833778 None:intergenic 40.0%
TGTGGAGTTTATGAGAAAGC+TGG - chr1.1:70833999-70834018 None:intergenic 40.0%
TTGCTCACTGCCATTAATTG+AGG + chr1.1:70833908-70833927 MS.gene88913:intron 40.0%
TTGGAGCTTAATTCTGCGAT+TGG + chr1.1:70834581-70834600 MS.gene88913:intron 40.0%
TTTCCAATCCAATAGCCATG+TGG - chr1.1:70832792-70832811 None:intergenic 40.0%
! CGTTGGTTGAGTTCTATAGA+AGG - chr1.1:70833365-70833384 None:intergenic 40.0%
! GCACGAACACTTTTCAGATT+AGG + chr1.1:70833451-70833470 MS.gene88913:intron 40.0%
! TTGTTGAGGCGAAGAGATTT+TGG + chr1.1:70834701-70834720 MS.gene88913:CDS 40.0%
!! GTGTGTTTTTCAGCTAGTTG+AGG + chr1.1:70834822-70834841 MS.gene88913:CDS 40.0%
!! TCAAATGGATGGGTTAAGTG+GGG - chr1.1:70833649-70833668 None:intergenic 40.0%
!! TGAGGTTGATGCAAAAGTAG+TGG - chr1.1:70833609-70833628 None:intergenic 40.0%
!!! AACAGGAGAGTGCTATGTTT+TGG + chr1.1:70834677-70834696 MS.gene88913:CDS 40.0%
!!! ACAGGAGAGTGCTATGTTTT+GGG + chr1.1:70834678-70834697 MS.gene88913:CDS 40.0%
!!! TGCTATGTTTTGGGTTGTTG+AGG + chr1.1:70834687-70834706 MS.gene88913:CDS 40.0%
!!! TGTTGTTTTGGTTTCCCATG+GGG - chr1.1:70833002-70833021 None:intergenic 40.0%
AGCCTTCTTGCTGAGATATC+TGG + chr1.1:70833097-70833116 MS.gene88913:CDS 45.0%
AGTGGTTGTCTCCCTACTAA+CGG - chr1.1:70833591-70833610 None:intergenic 45.0%
CAGATTAGGTGTATCTCGTG+TGG + chr1.1:70833465-70833484 MS.gene88913:intron 45.0%
CGTCTCACTTGAGACATGTT+TGG + chr1.1:70834039-70834058 MS.gene88913:intron 45.0%
CGTTGGAAGACATCTCTCTT+TGG - chr1.1:70833838-70833857 None:intergenic 45.0%
GGAAAACAAGGAGGATAGCA+TGG - chr1.1:70832981-70833000 None:intergenic 45.0%
GTCCAGATATCTCAGCAAGA+AGG - chr1.1:70833102-70833121 None:intergenic 45.0%
TCCTCTCTTCAAGTCAAGGA+GGG - chr1.1:70833704-70833723 None:intergenic 45.0%
TCCTTCCTCTCTTCAAGTCA+AGG - chr1.1:70833708-70833727 None:intergenic 45.0%
TTCCTCTCTTCAAGTCAAGG+AGG - chr1.1:70833705-70833724 None:intergenic 45.0%
TTTAGGCTCCTCTTGTTGGT+TGG - chr1.1:70833068-70833087 None:intergenic 45.0%
! ACGGGCATTGTCATTTGAGA+TGG - chr1.1:70833130-70833149 None:intergenic 45.0%
! CGTGTTGTTAAGAAGTTGCG+CGG - chr1.1:70834652-70834671 None:intergenic 45.0%
! TCCTTGACTTGAAGAGAGGA+AGG + chr1.1:70833704-70833723 MS.gene88913:intron 45.0%
! TGAATGTAGCACTGGAGCAT+TGG + chr1.1:70834346-70834365 MS.gene88913:CDS 45.0%
!!! ATCCTCCTTGTTTTCCCCAT+GGG + chr1.1:70832985-70833004 MS.gene88913:CDS 45.0%
!!! TATCCTCCTTGTTTTCCCCA+TGG + chr1.1:70832984-70833003 MS.gene88913:CDS 45.0%
!! TTATAATATTGAAATATAAT+TGG + chr1.1:70834562-70834581 MS.gene88913:intron 5.0%
AGAAGGCTGCGATAGCGTTT+AGG - chr1.1:70833085-70833104 None:intergenic 50.0%
AGCGTTTAGGCTCCTCTTGT+TGG - chr1.1:70833072-70833091 None:intergenic 50.0%
CCTCTCTTCAAGTCAAGGAG+GGG - chr1.1:70833703-70833722 None:intergenic 50.0%
CTCAAGTGAGACGTAGCATG+CGG - chr1.1:70834032-70834051 None:intergenic 50.0%
CTCTCTTCAAGTCAAGGAGG+GGG - chr1.1:70833702-70833721 None:intergenic 50.0%
GAAAGCTTGCAACAGACCAG+AGG + chr1.1:70833667-70833686 MS.gene88913:intron 50.0%
GCATGCGGTGTACAACATTG+TGG - chr1.1:70834017-70834036 None:intergenic 50.0%
GGTGTCCATGTCCGTTAGTA+GGG + chr1.1:70833577-70833596 MS.gene88913:intron 50.0%
GGTTTCCCATGGGGAAAACA+AGG - chr1.1:70832993-70833012 None:intergenic 50.0%
TTCCCATGGGGAAAACAAGG+AGG - chr1.1:70832990-70833009 None:intergenic 50.0%
! TGTCTCCCTACTAACGGACA+TGG - chr1.1:70833585-70833604 None:intergenic 50.0%
!! TTTTATCGGCGTGTCGGTGT+CGG + chr1.1:70833556-70833575 MS.gene88913:intron 50.0%
CGGTGTCCATGTCCGTTAGT+AGG + chr1.1:70833576-70833595 MS.gene88913:intron 55.0%
GAGCGGCTGCACTAGTGTTT+GGG + chr1.1:70833872-70833891 MS.gene88913:intron 55.0%
TCAAGTCAAGGAGGGGGATG+CGG - chr1.1:70833696-70833715 None:intergenic 55.0%
! CCCCTCCTTGACTTGAAGAG+AGG + chr1.1:70833700-70833719 MS.gene88913:intron 55.0%
!! TGGAGCATTGGAGAGAGCCA+AGG + chr1.1:70834358-70834377 MS.gene88913:CDS 55.0%
CGAGCGGCTGCACTAGTGTT+TGG + chr1.1:70833871-70833890 MS.gene88913:intron 60.0%
GTTGTGACTGCGGCAAGCCT+TGG - chr1.1:70834378-70834397 None:intergenic 60.0%
AGTCAAGGAGGGGGATGCGG+AGG - chr1.1:70833693-70833712 None:intergenic 65.0%
GAGGGGGATGCGGAGGCCTC+TGG - chr1.1:70833686-70833705 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 70832638 70834894 70832638 ID=MS.gene88913
chr1.1 mRNA 70832638 70834894 70832638 ID=MS.gene88913.t1;Parent=MS.gene88913
chr1.1 exon 70832638 70833190 70832638 ID=MS.gene88913.t1.exon1;Parent=MS.gene88913.t1
chr1.1 CDS 70832638 70833190 70832638 ID=cds.MS.gene88913.t1;Parent=MS.gene88913.t1
chr1.1 exon 70834273 70834448 70834273 ID=MS.gene88913.t1.exon2;Parent=MS.gene88913.t1
chr1.1 CDS 70834273 70834448 70834273 ID=cds.MS.gene88913.t1;Parent=MS.gene88913.t1
chr1.1 exon 70834643 70834894 70834643 ID=MS.gene88913.t1.exon3;Parent=MS.gene88913.t1
chr1.1 CDS 70834643 70834894 70834643 ID=cds.MS.gene88913.t1;Parent=MS.gene88913.t1
Gene Sequence

>MS.gene88913

ATGATATTTCAAGTTTCTGAAAGCGATACCAAGTTTTGCAAAATTATTGATGAAGACTGCCTTCGAAACGACGATTTGATGATTACAGCTTTGAGTAGTAAATTTTGGGATAATATTTCTAGCCCTATATGTCTTCAGCTTCCTGATAAAACCACATGGCTATTGGATTGGAAACAACATGATGATACTCATGTGTTATTAAACAAGTGGAAGGCATTTGCTGAAGCTTATTCTTTGAAGCATAATCAAGTTTTGCACTTCAACTACGTTGAAGCCTCATATCCCATCAGCATATTTAACCTATCCATTTTTGATGAAACTGGCACGGAAATATGTTACCCCATGCTATCCTCCTTGTTTTCCCCATGGGAAACCAAAACAACAAAACCTGCAGTTTCTTATTATCATCTCAATAGAATGAAGAAAACCAACCAACAAGAGGAGCCTAAACGCTATCGCAGCCTTCTTGCTGAGATATCTGGACAAACTCCATCTCAAATGACAATGCCCGTTGAGTATGCAGATTTTTATACCGCAAAACCTAAAAAAAGAGGTACATGAGTTTCTTTCTTCCCCGTTTTGTTTCCTTAAATTAAGTTGTTTTTAATTTTTACGGATTTCATTAATCAAAATAGTAGCAATACAATCCGGCAACAAATCAAAAACTTGAGTGTTGACCGTATATAGCTGTCTTAGTTAATTCGTGGACTACCATATTGGTTTGCCTTCTATAGAACTCAACCAACGAGTTTGAACATAAGTGGAAAAAAAATCTCTAATGATTAAAAAATCATAGGGTAGGGAGACTATGAAGCACGAACACTTTTCAGATTAGGTGTATCTCGTGTGGTACATGTGTCGTATCTGACACTGACACTTATAGTTACACTGCATTATATCATTTACTTAAATTATTAGTTTTATCGGCGTGTCGGTGTCGGTGTCCATGTCCGTTAGTAGGGAGACAACCACTACTTTTGCATCAACCTCAAATATATCATTGTTAAGCCCCACTTAACCCATCCATTTGAAAGCTTGCAACAGACCAGAGGCCTCCGCATCCCCCTCCTTGACTTGAAGAGAGGAAGGAAAAGAGATAGTTTTTACCTTGTTAAATTCCCCTCATGACTTCTAATGCACATATCGATACCAACTTTGTTATGCATAAAAGTTGCATCTACATTACAATTCAACATGCCAAAGAGAGATGTCTTCCAACGAACAATTACTTGTCGAGCGGCTGCACTAGTGTTTGGGTTCCGTTGTAATTTTGCTCACTGCCATTAATTGAGGAAGGATGCAGCACAATGATATATTTTAGTAACATTTTCACCCATTTCATCCCACAATTTTAAATACCAGCTTTCTCATAAACTCCACAATGTTGTACACCGCATGCTACGTCTCACTTGAGACATGTTTGGGGAAACTTTAAAATACAAATCAACAATTATATCCACATGTAAAATATGTGGTTCTATCATATCTCGTATTCTAAGAGATTTCCAAATTTCTATAGCAACATGACGTGTGTGTGCGCGCACGTGCATCAAAAACTACAACTTTGATGGTAAAAGATAAAAAAACTGTTATATATGTGTTGCTTTCATTCTGCATCTCAAATTATTTTAATAGGTAGAAGAAGAGAAGTCCCCTATAACATTAGGGGATCGTCTACTATGAAACAAAGGAAGGTTTCAGAAGCTATTGAATGTAGCACTGGAGCATTGGAGAGAGCCAAGGCTTGCCGCAGTCACAACAAATCTTTCATTCGTCAAATGCGCCCATCACACATTCAAAGAAATGTGCTGGTAAGTTTGTGCTACATTTCTGGTTCGCTTCATTTTTTTGTTGAAAGTATGTGAATCAAATATTAAATCCAATAACAAGTTATAATAATTGAATTTGTCAAAGAAAAAACAAGTTATAATATTGAAATATAATTGGAGCTTAATTCTGCGATTGGTAATGTTGTTTTTGCTAATGATAAAAACTGTCAAAACAGGTCATACCGCGCAACTTCTTAACAACACGTCAACAACAGGAGAGTGCTATGTTTTGGGTTGTTGAGGCGAAGAGATTTTGGCATGTCAAGTTAAAGCTTAACTCTTGCAATGGACAAATATCTTTTAATGATGGTTGGAAGAATTTTGTCACGGACAATAAATTGAAACTAGGTGATGTGTGTGTTTTTCAGCTAGTTGAGGCACCAAGACTTTTTTTTGAAGTTGTTATCTTTCGTGCAAGAGAACAATAA
Protein sequence

>MS.gene88913.t1

MIFQVSESDTKFCKIIDEDCLRNDDLMITALSSKFWDNISSPICLQLPDKTTWLLDWKQHDDTHVLLNKWKAFAEAYSLKHNQVLHFNYVEASYPISIFNLSIFDETGTEICYPMLSSLFSPWETKTTKPAVSYYHLNRMKKTNQQEEPKRYRSLLAEISGQTPSQMTMPVEYADFYTAKPKKRGRRREVPYNIRGSSTMKQRKVSEAIECSTGALERAKACRSHNKSFIRQMRPSHIQRNVLVIPRNFLTTRQQQESAMFWVVEAKRFWHVKLKLNSCNGQISFNDGWKNFVTDNKLKLGDVCVFQLVEAPRLFFEVVIFRAREQ