AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88963

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88963.t1 MTR_0402s0040 73.039 204 54 1 12 215 2 204 2.04e-96 299
MS.gene88963.t1 MTR_0402s0040 84.211 57 9 0 382 438 248 304 9.53e-15 76.6
MS.gene88963.t1 MTR_6g017200 73.643 129 33 1 4 131 25 153 5.56e-58 188
MS.gene88963.t1 MTR_7g113010 65.217 161 40 2 1 161 424 568 6.20e-56 196
MS.gene88963.t1 MTR_1g057920 72.800 125 32 1 1 125 1 123 2.07e-54 178
MS.gene88963.t1 MTR_5g015480 63.636 154 52 1 12 165 36 185 3.36e-54 182
MS.gene88963.t1 MTR_2g070590 70.833 120 35 0 20 139 1 120 4.39e-52 172
MS.gene88963.t1 MTR_6g051425 28.800 250 161 7 29 266 7 251 6.61e-33 127
MS.gene88963.t1 MTR_0558s0020 30.290 241 149 4 40 261 40 280 1.83e-32 125
MS.gene88963.t1 MTR_0137s0040 57.692 104 44 0 1 104 1 104 3.36e-32 119
MS.gene88963.t1 MTR_7g074790 41.573 178 82 4 30 206 4 160 1.75e-27 110
MS.gene88963.t1 MTR_1g083640 28.947 228 143 4 40 248 55 282 3.27e-27 110
MS.gene88963.t1 MTR_1g070355 30.531 226 145 5 42 261 80 299 7.23e-27 114
MS.gene88963.t1 MTR_1g050985 78.333 60 13 0 106 165 39 98 3.76e-26 102
MS.gene88963.t1 MTR_8g446020 33.962 159 104 1 104 261 82 240 1.02e-25 105
MS.gene88963.t1 MTR_6g090505 30.583 206 128 3 71 261 10 215 1.67e-24 104
MS.gene88963.t1 MTR_0291s0060 63.514 74 27 0 13 86 12 85 6.95e-23 92.8
MS.gene88963.t1 MTR_4g102720 31.214 173 83 3 32 204 3 139 7.17e-22 94.4
MS.gene88963.t1 MTR_5g039760 35.468 203 101 6 33 232 7 182 9.74e-22 92.8
MS.gene88963.t1 MTR_4g035820 28.625 269 178 8 9 269 50 312 2.16e-20 94.7
MS.gene88963.t1 MTR_7g061980 42.241 116 63 3 33 147 7 119 5.93e-20 85.9
MS.gene88963.t1 MTR_0337s0040 31.655 139 94 1 105 242 84 222 3.42e-19 86.7
MS.gene88963.t1 MTR_5g076070 26.577 222 159 3 42 261 59 278 1.61e-18 85.9
MS.gene88963.t1 MTR_7g446520 28.175 252 153 6 42 292 94 318 4.68e-18 85.5
MS.gene88963.t1 MTR_4g067290 44.444 108 54 3 35 140 55 158 9.83e-18 82.8
MS.gene88963.t1 MTR_4g067290 44.444 108 54 3 35 140 55 158 1.05e-17 82.8
MS.gene88963.t1 MTR_4g067290 44.444 108 54 3 35 140 75 178 1.69e-17 82.4
MS.gene88963.t1 MTR_4g067290 44.444 108 54 3 35 140 73 176 1.70e-17 82.4
MS.gene88963.t1 MTR_4g067290 44.444 108 54 3 35 140 75 178 1.78e-17 82.4
MS.gene88963.t1 MTR_4g067290 44.444 108 54 3 35 140 115 218 2.92e-17 82.4
MS.gene88963.t1 MTR_1g008290 35.606 132 82 3 101 230 11 141 9.04e-17 77.4
MS.gene88963.t1 MTR_1g086270 56.061 66 21 2 316 381 1 58 2.77e-16 75.1
MS.gene88963.t1 MTR_7g446480 34.868 152 96 2 112 261 140 290 5.58e-16 79.0
MS.gene88963.t1 MTR_2g098920 40.741 108 58 3 35 140 79 182 1.25e-15 77.0
MS.gene88963.t1 MTR_2g014100 24.623 199 130 3 40 219 48 245 3.61e-15 75.5
MS.gene88963.t1 MTR_3g006370 38.739 111 64 3 35 142 49 158 4.72e-15 74.7
MS.gene88963.t1 MTR_1g091013 54.412 68 20 1 27 94 3 59 5.97e-15 70.1
MS.gene88963.t1 MTR_7g446510 34.211 152 97 2 112 261 155 305 8.02e-15 75.9
MS.gene88963.t1 MTR_1g019850 31.288 163 105 2 7 169 41 196 8.15e-14 71.2
MS.gene88963.t1 MTR_6g022080 27.451 153 108 2 42 192 91 242 1.79e-13 70.5
MS.gene88963.t1 MTR_2g099430 38.202 89 53 1 59 147 26 112 2.87e-12 63.9
MS.gene88963.t1 MTR_1g055240 30.769 117 81 0 104 220 33 149 2.96e-12 65.1
MS.gene88963.t1 MTR_2g098880 35.965 114 69 3 32 142 57 169 4.83e-12 66.2
MS.gene88963.t1 MTR_2g098880 35.965 114 69 3 32 142 69 181 5.20e-12 66.6
MS.gene88963.t1 MTR_3g450850 24.790 238 157 7 41 262 52 283 3.06e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88963.t1 AT4G38180 34.870 347 205 7 23 350 60 404 6.25e-59 207
MS.gene88963.t1 AT4G15090 30.655 336 212 8 33 350 48 380 5.34e-44 165
MS.gene88963.t1 AT4G15090 30.655 336 212 8 33 350 48 380 5.34e-44 165
MS.gene88963.t1 AT4G15090 30.655 336 212 8 33 350 48 380 5.34e-44 165
MS.gene88963.t1 AT4G15090 30.655 336 212 8 33 350 48 380 5.34e-44 165
MS.gene88963.t1 AT4G15090 30.655 336 212 8 33 350 48 380 5.34e-44 165
MS.gene88963.t1 AT1G10240 28.916 332 208 12 29 336 41 368 2.29e-36 142
MS.gene88963.t1 AT1G10240 28.916 332 208 12 29 336 41 368 2.29e-36 142
MS.gene88963.t1 AT1G76320 27.964 329 199 9 40 346 1 313 2.67e-34 137
MS.gene88963.t1 AT1G76320 27.964 329 199 9 40 346 1 313 2.67e-34 137
MS.gene88963.t1 AT1G76320 27.964 329 199 9 40 346 1 313 2.71e-34 137
MS.gene88963.t1 AT1G76320 27.964 329 199 9 40 346 1 313 3.16e-34 136
MS.gene88963.t1 AT3G22170 28.228 333 186 11 33 336 67 375 6.55e-31 127
MS.gene88963.t1 AT3G22170 28.228 333 186 11 33 336 67 375 6.55e-31 127
MS.gene88963.t1 AT2G32250 28.037 321 161 10 37 336 39 310 9.66e-30 123
MS.gene88963.t1 AT2G32250 28.037 321 161 10 37 336 39 310 9.66e-30 123
MS.gene88963.t1 AT2G32250 28.037 321 161 10 37 336 39 310 9.66e-30 123
MS.gene88963.t1 AT2G32250 28.037 321 161 10 37 336 39 310 1.00e-29 123
MS.gene88963.t1 AT2G32250 28.037 321 161 10 37 336 39 310 1.00e-29 123
MS.gene88963.t1 AT2G32250 28.037 321 161 10 37 336 39 310 1.01e-29 123
MS.gene88963.t1 AT2G32250 27.987 318 159 10 40 336 1 269 1.52e-29 122
MS.gene88963.t1 AT2G32250 27.987 318 159 10 40 336 1 269 1.83e-29 122
MS.gene88963.t1 AT2G27110 29.462 353 196 13 28 358 41 362 3.09e-27 115
MS.gene88963.t1 AT2G27110 29.462 353 196 13 28 358 41 362 3.09e-27 115
MS.gene88963.t1 AT3G06250 26.524 328 183 8 27 337 181 467 2.16e-26 113
MS.gene88963.t1 AT3G06250 26.524 328 183 8 27 337 181 467 2.16e-26 113
MS.gene88963.t1 AT3G06250 26.524 328 183 8 27 337 181 467 2.16e-26 113
MS.gene88963.t1 AT5G18960 27.729 339 186 12 21 338 192 492 1.87e-25 110
MS.gene88963.t1 AT5G18960 27.729 339 186 12 21 338 192 492 1.87e-25 110
MS.gene88963.t1 AT5G28530 23.614 415 262 14 36 410 55 454 2.21e-25 110
MS.gene88963.t1 AT5G28530 23.614 415 262 14 36 410 55 454 2.21e-25 110
MS.gene88963.t1 AT5G28530 23.614 415 262 14 36 410 55 454 2.30e-25 110
MS.gene88963.t1 AT4G19990 24.595 370 196 9 42 372 41 366 1.37e-24 107
MS.gene88963.t1 AT4G19990 24.595 370 196 9 42 372 27 352 1.62e-24 107
MS.gene88963.t1 AT4G19990 24.595 370 196 9 42 372 27 352 1.65e-24 107
MS.gene88963.t1 AT4G19990 24.595 370 196 9 42 372 27 352 1.65e-24 107
MS.gene88963.t1 AT4G19990 24.595 370 196 9 42 372 27 352 1.90e-24 107
MS.gene88963.t1 AT4G19990 24.595 370 196 9 42 372 27 352 1.90e-24 107
MS.gene88963.t1 AT1G52520 27.356 329 185 12 36 336 85 387 1.66e-22 101
MS.gene88963.t1 AT1G80010 25.876 371 230 11 18 357 77 433 2.72e-21 97.8
MS.gene88963.t1 AT2G43280 41.026 117 65 3 34 147 20 135 9.47e-19 85.1
MS.gene88963.t1 AT4G19990 23.442 337 175 9 75 372 3 295 3.15e-17 85.1
MS.gene88963.t1 AT2G27110 34.146 164 87 6 215 358 55 217 9.44e-17 83.6
MS.gene88963.t1 AT3G59470 42.453 106 59 2 35 140 69 172 1.20e-16 80.1
MS.gene88963.t1 AT3G59470 42.453 106 59 2 35 140 69 172 1.20e-16 80.1
MS.gene88963.t1 AT3G59470 42.453 106 59 2 35 140 81 184 1.55e-16 79.7
MS.gene88963.t1 AT5G28530 21.594 389 239 11 36 410 55 391 5.85e-16 80.9
MS.gene88963.t1 AT5G28530 21.594 389 239 11 36 410 55 391 6.30e-16 80.9
MS.gene88963.t1 AT2G43280 38.000 100 58 3 51 147 2 100 1.65e-13 68.9
MS.gene88963.t1 AT4G12850 36.508 126 73 3 36 161 11 129 1.83e-13 68.2
MS.gene88963.t1 AT3G07500 39.252 107 64 1 34 140 31 136 6.65e-13 68.2
MS.gene88963.t1 AT4G12850 39.048 105 60 2 35 139 10 110 1.76e-12 65.1
MS.gene88963.t1 AT4G12850 39.048 105 60 2 35 139 10 110 3.43e-12 65.5

Find 92 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAAATAACAAACATATTT+TGG 0.063618 1.4:-115313 MS.gene88963:CDS
AGACAATTCTGTTGATAAAT+TGG 0.199895 1.4:-116002 MS.gene88963:CDS
CATGAATCCGTCGTCTATTT+TGG 0.206115 1.4:-116026 MS.gene88963:CDS
GCACAAATGATCAATGATTA+TGG 0.212099 1.4:-115284 MS.gene88963:CDS
TTTGGTATTCGTCGAGAATA+TGG 0.265133 1.4:-115845 MS.gene88963:CDS
CATTTCATGGATTATGTACT+TGG 0.289726 1.4:-115005 MS.gene88963:CDS
AGAATTTGCTTCGAACAAAA+AGG 0.294396 1.4:-115439 MS.gene88963:CDS
ATATATTCATGCAATTCTTT+TGG 0.296908 1.4:+115515 None:intergenic
ATTATAATGGGAGATGAATC+TGG 0.303116 1.4:-115545 MS.gene88963:CDS
ACAAGCATCACAAATTATAA+TGG 0.308529 1.4:-115558 MS.gene88963:CDS
AATGAGTATAGTAAAAGAAT+TGG 0.336174 1.4:-115869 MS.gene88963:CDS
CACCACATACAAGACAAATA+AGG 0.340827 1.4:-115238 MS.gene88963:CDS
ATTTCACTTGATCGAAAGAT+AGG 0.345588 1.4:-115680 MS.gene88963:CDS
GTTATGCCGGAGACATTTCA+TGG 0.359089 1.4:-115018 MS.gene88963:CDS
CGGCCGTTGGGAGTATTTGT+TGG 0.367992 1.4:-115210 MS.gene88963:CDS
CTCTATCCCACCAGCCTGCT+TGG 0.381730 1.4:+115490 None:intergenic
ATATAAGACAAAACGCTCTA+AGG 0.384570 1.4:-114981 MS.gene88963:CDS
TTTGTCTTCATTGTGCCCCT+TGG 0.391077 1.4:+114353 None:intergenic
TATAGTAAAAGAATTGGATT+TGG 0.393932 1.4:-115863 MS.gene88963:CDS
GATATTCCTCGTATTCCTCT+TGG 0.399365 1.4:+114512 None:intergenic
CTTCGCTTGATTGTGCCCCT+TGG 0.399434 1.4:+114407 None:intergenic
ACAAAAGACGTCAACCGATT+GGG 0.422947 1.4:-115748 MS.gene88963:CDS
CAAGCATCACAAATTATAAT+GGG 0.429280 1.4:-115557 MS.gene88963:CDS
CAATCAAGCGAAGTTGATAA+TGG 0.429305 1.4:-114397 MS.gene88963:CDS
AGGATGGACTCACTAAAGTA+TGG 0.430267 1.4:-115419 MS.gene88963:CDS
GCTGTCACAAATTATGATAA+TGG 0.436441 1.4:-114451 MS.gene88963:CDS
ACAAGACAAATAAGGGTTAT+CGG 0.444271 1.4:-115230 MS.gene88963:CDS
TGCATAAAGGTGTTGAAAGA+AGG 0.445593 1.4:-114481 MS.gene88963:CDS
ACCACATACAAGACAAATAA+GGG 0.447196 1.4:-115237 MS.gene88963:CDS
GGGTGTAAACATTTCTGGCT+TGG 0.449135 1.4:+114554 None:intergenic
GGATATTTCTTTAGTTATGC+CGG 0.462107 1.4:-115031 MS.gene88963:CDS
CACAAATGATCAATGATTAT+GGG 0.462910 1.4:-115283 MS.gene88963:CDS
TGAAAGTCATAAAAGAAAGA+TGG 0.464163 1.4:+115350 None:intergenic
AGCATCTTGATCCGTTAGAA+TGG 0.469910 1.4:+115065 None:intergenic
AACGGGGTGTAATGCACGTA+TGG 0.472531 1.4:-115705 MS.gene88963:CDS
AAAGGGCTGTCAATGGTAAA+CGG 0.476177 1.4:-114654 MS.gene88963:intron
AATGGGCATGGACTTATGTT+CGG 0.478812 1.4:-114789 MS.gene88963:CDS
ATATCAAGACACTTGCATAA+AGG 0.478993 1.4:-114494 MS.gene88963:CDS
ATCAATGATTATGGGTACTT+TGG 0.481641 1.4:-115275 MS.gene88963:CDS
ACCCTTATTTGTCTTGTATG+TGG 0.486140 1.4:+115236 None:intergenic
AATAAGGGTTATCGGCCGTT+GGG 0.489965 1.4:-115222 MS.gene88963:CDS
AGCTACCTAGATTGAAAATG+AGG 0.493161 1.4:-114594 MS.gene88963:CDS
GACAAAAGACGTCAACCGAT+TGG 0.495230 1.4:-115749 MS.gene88963:CDS
TTGGTATTCGTCGAGAATAT+GGG 0.496079 1.4:-115844 MS.gene88963:CDS
TGACGACATCAAACCTCGCT+TGG 0.500006 1.4:-115933 MS.gene88963:CDS
TCTACGGCAGAAACTAGAAC+GGG 0.501864 1.4:-115722 MS.gene88963:CDS
CACTATTCTTGAACAAAATG+AGG 0.507123 1.4:-115975 MS.gene88963:CDS
CATACTCTTGTGGCTGAAGA+AGG 0.512605 1.4:+115618 None:intergenic
CAATGTCAAGCTACAATCCA+AGG 0.517257 1.4:-114370 MS.gene88963:CDS
CAATGTCAAGCTACAATCCA+AGG 0.517257 1.4:-114424 MS.gene88963:CDS
TTGTTGGACTTAATAATCAT+CGG 0.518157 1.4:-115194 MS.gene88963:CDS
AAATAAGGGTTATCGGCCGT+TGG 0.523633 1.4:-115223 MS.gene88963:CDS
CACTTTAAAAGGGCTGTCAA+TGG 0.540712 1.4:-114661 MS.gene88963:intron
CATAATCCATGAAATGTCTC+CGG 0.541291 1.4:+115012 None:intergenic
GTTCGGAAAACATTCACTGC+AGG 0.544889 1.4:-114772 MS.gene88963:intron
GAATATATGTCCAAGCAGGC+TGG 0.551023 1.4:-115500 MS.gene88963:CDS
CTCTCATCGTCGCATATCTG+AGG 0.552258 1.4:-115582 MS.gene88963:CDS
TCACTAAAGTATGGTGAAGT+GGG 0.555591 1.4:-115410 MS.gene88963:CDS
TCTGCCGTAGACTCCCCAAT+CGG 0.561558 1.4:+115734 None:intergenic
TCAACCGATTGGGGAGTCTA+CGG 0.567266 1.4:-115738 MS.gene88963:CDS
TTTCACTTGATCGAAAGATA+GGG 0.567868 1.4:-115679 MS.gene88963:CDS
TTATAATGGGAGATGAATCT+GGG 0.575232 1.4:-115544 MS.gene88963:CDS
GCATGAATATATGTCCAAGC+AGG 0.577803 1.4:-115504 MS.gene88963:CDS
ACCTAGATTGAAAATGAGGA+AGG 0.581600 1.4:-114590 MS.gene88963:CDS
TCAAGATGCTGCGATGGCAA+AGG 0.584614 1.4:-115052 MS.gene88963:CDS
GCTGGTGGGATAGAGATGGT+TGG 0.588612 1.4:-115482 MS.gene88963:CDS
AACGGATCAAGATGCTGCGA+TGG 0.589430 1.4:-115058 MS.gene88963:CDS
CTCACTAAAGTATGGTGAAG+TGG 0.589479 1.4:-115411 MS.gene88963:CDS
AGATTCACATGCTACAAAGA+AGG 0.592653 1.4:-115785 MS.gene88963:CDS
TATATGTCCAAGCAGGCTGG+TGG 0.594123 1.4:-115497 MS.gene88963:CDS
CAAAAGACGTCAACCGATTG+GGG 0.597324 1.4:-115747 MS.gene88963:CDS
AAAGCCTAAAACCATTCTAA+CGG 0.600846 1.4:-115076 MS.gene88963:CDS
GGATATGATATTTGAATCCG+AGG 0.604669 1.4:-115912 MS.gene88963:CDS
CTTGAACAAAATGAGGAACA+TGG 0.611748 1.4:-115968 MS.gene88963:CDS
ACGGGGTGTAATGCACGTAT+GGG 0.615409 1.4:-115704 MS.gene88963:CDS
AAATTCATAAGCAGCTACCT+CGG 0.623054 1.4:+115895 None:intergenic
GCAGGCTGGTGGGATAGAGA+TGG 0.629905 1.4:-115486 MS.gene88963:CDS
TCAAATATCATATCCAAGCG+AGG 0.630717 1.4:+115920 None:intergenic
ATATGTCCAAGCAGGCTGGT+GGG 0.630724 1.4:-115496 MS.gene88963:CDS
AATGTCAAGCTACAATCCAA+GGG 0.633905 1.4:-114369 MS.gene88963:CDS
AATGTCAAGCTACAATCCAA+GGG 0.633905 1.4:-114423 MS.gene88963:CDS
GTCTACGGCAGAAACTAGAA+CGG 0.642684 1.4:-115723 MS.gene88963:CDS
TCGAAAGATAGGGAAATACA+AGG 0.644061 1.4:-115669 MS.gene88963:CDS
AGTCCAACAAATACTCCCAA+CGG 0.659244 1.4:+115207 None:intergenic
AATATTTGAGGAATTCCAAG+AGG 0.661269 1.4:-114527 MS.gene88963:CDS
GGAATTCCAAGAGGAATACG+AGG 0.680926 1.4:-114518 MS.gene88963:CDS
ACTCTTGTGGCTGAAGAAGG+TGG 0.685524 1.4:+115621 None:intergenic
TTGTCTACCAAAATAGACGA+CGG 0.691097 1.4:+116019 None:intergenic
ATCATGTGAACATACTCTTG+TGG 0.707114 1.4:+115608 None:intergenic
ATGTCAAGCTACAATCCAAG+GGG 0.727067 1.4:-114368 MS.gene88963:CDS
ATGTCAAGCTACAATCCAAG+GGG 0.727067 1.4:-114422 MS.gene88963:CDS
CTACGGCAGAAACTAGAACG+GGG 0.748090 1.4:-115721 MS.gene88963:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTACACACTTTAAA+AGG - chr1.4:115713-115732 MS.gene88963:CDS 15.0%
!!! ATTTTTTACACACTTTAAAA+GGG - chr1.4:115714-115733 MS.gene88963:CDS 15.0%
!! AATGAGTATAGTAAAAGAAT+TGG - chr1.4:114516-114535 MS.gene88963:CDS 20.0%
!! TATAGTAAAAGAATTGGATT+TGG - chr1.4:114522-114541 MS.gene88963:CDS 20.0%
!!! AGCAAATAACAAACATATTT+TGG - chr1.4:115072-115091 MS.gene88963:CDS 20.0%
!!! ATATATTCATGCAATTCTTT+TGG + chr1.4:114873-114892 None:intergenic 20.0%
!!! GCAAATAACAAACATATTTT+GGG - chr1.4:115073-115092 MS.gene88963:CDS 20.0%
!!! TTTCTTTTATGACTTTCAAA+TGG - chr1.4:115040-115059 MS.gene88963:CDS 20.0%
!!! TTTTCGATTTAAGGAAAAAT+GGG - chr1.4:115579-115598 MS.gene88963:CDS 20.0%
!!! TTTTTCGATTTAAGGAAAAA+TGG - chr1.4:115578-115597 MS.gene88963:CDS 20.0%
! AATTTAAATCCGACTTCAAA+TGG + chr1.4:115687-115706 None:intergenic 25.0%
! ACAAGCATCACAAATTATAA+TGG - chr1.4:114827-114846 MS.gene88963:intron 25.0%
! CAAGCATCACAAATTATAAT+GGG - chr1.4:114828-114847 MS.gene88963:intron 25.0%
! CACAAATGATCAATGATTAT+GGG - chr1.4:115102-115121 MS.gene88963:CDS 25.0%
! TGAAAGTCATAAAAGAAAGA+TGG + chr1.4:115038-115057 None:intergenic 25.0%
! TTGTTGGACTTAATAATCAT+CGG - chr1.4:115191-115210 MS.gene88963:CDS 25.0%
!! AAGATGAATTTTTGAATGCA+TGG - chr1.4:115503-115522 MS.gene88963:CDS 25.0%
!! AGACAATTCTGTTGATAAAT+TGG - chr1.4:114383-114402 MS.gene88963:CDS 25.0%
!! GGAATTCCTCAAATATTTTT+GGG + chr1.4:115855-115874 None:intergenic 25.0%
!! TGGAATTCCTCAAATATTTT+TGG + chr1.4:115856-115875 None:intergenic 25.0%
!! TTTGAAAAACCATTTGAAGT+CGG - chr1.4:115675-115694 MS.gene88963:CDS 25.0%
!!! GAATTCCTCAAATATTTTTG+GGG + chr1.4:115854-115873 None:intergenic 25.0%
!!! GCATATGATTTTTCGATTTA+AGG - chr1.4:115570-115589 MS.gene88963:CDS 25.0%
AAAGCCTAAAACCATTCTAA+CGG - chr1.4:115309-115328 MS.gene88963:CDS 30.0%
AATATTTGAGGAATTCCAAG+AGG - chr1.4:115858-115877 MS.gene88963:CDS 30.0%
ACAAGACAAATAAGGGTTAT+CGG - chr1.4:115155-115174 MS.gene88963:intron 30.0%
ACCACATACAAGACAAATAA+GGG - chr1.4:115148-115167 MS.gene88963:intron 30.0%
ATATAAGACAAAACGCTCTA+AGG - chr1.4:115404-115423 MS.gene88963:CDS 30.0%
ATATCAAGACACTTGCATAA+AGG - chr1.4:115891-115910 MS.gene88963:CDS 30.0%
ATCAATGATTATGGGTACTT+TGG - chr1.4:115110-115129 MS.gene88963:CDS 30.0%
ATTTCACTTGATCGAAAGAT+AGG - chr1.4:114705-114724 MS.gene88963:intron 30.0%
CACTATTCTTGAACAAAATG+AGG - chr1.4:114410-114429 MS.gene88963:CDS 30.0%
GAATAAAAGCAAAAAAGACG+GGG - chr1.4:114563-114582 MS.gene88963:CDS 30.0%
GCACAAATGATCAATGATTA+TGG - chr1.4:115101-115120 MS.gene88963:CDS 30.0%
GCTGTCACAAATTATGATAA+TGG - chr1.4:115934-115953 MS.gene88963:CDS 30.0%
GGAATAAAAGCAAAAAAGAC+GGG - chr1.4:114562-114581 MS.gene88963:CDS 30.0%
GGATATTTCTTTAGTTATGC+CGG - chr1.4:115354-115373 MS.gene88963:CDS 30.0%
GGGAATAAAAGCAAAAAAGA+CGG - chr1.4:114561-114580 MS.gene88963:CDS 30.0%
TCAAATAACCACTGAAAAGA+AGG + chr1.4:115262-115281 None:intergenic 30.0%
TTACACCCCAAAAATATTTG+AGG - chr1.4:115846-115865 MS.gene88963:CDS 30.0%
TTTCACTTGATCGAAAGATA+GGG - chr1.4:114706-114725 MS.gene88963:intron 30.0%
! AAACAATACCTTCTTTTCAG+TGG - chr1.4:115251-115270 MS.gene88963:CDS 30.0%
! ACTTATTGAGCATAACGTTT+TGG - chr1.4:115534-115553 MS.gene88963:CDS 30.0%
! AGAATTTGCTTCGAACAAAA+AGG - chr1.4:114946-114965 MS.gene88963:intron 30.0%
! ATTATAATGGGAGATGAATC+TGG - chr1.4:114840-114859 MS.gene88963:intron 30.0%
! CATTTCATGGATTATGTACT+TGG - chr1.4:115380-115399 MS.gene88963:CDS 30.0%
! GAAACTTTTCTCAAAGCAAT+GGG - chr1.4:115280-115299 MS.gene88963:CDS 30.0%
! GCTTACTCTTTTGATATAGA+TGG + chr1.4:115438-115457 None:intergenic 30.0%
! TGAAACTTTTCTCAAAGCAA+TGG - chr1.4:115279-115298 MS.gene88963:CDS 30.0%
! TTATAATGGGAGATGAATCT+GGG - chr1.4:114841-114860 MS.gene88963:intron 30.0%
AAATTCATAAGCAGCTACCT+CGG + chr1.4:114493-114512 None:intergenic 35.0%
AATGTCAAGCTACAATCCAA+GGG - chr1.4:115962-115981 MS.gene88963:CDS 35.0%
ACCTAGATTGAAAATGAGGA+AGG - chr1.4:115795-115814 MS.gene88963:CDS 35.0%
AGATTCACATGCTACAAAGA+AGG - chr1.4:114600-114619 MS.gene88963:CDS 35.0%
AGCTACCTAGATTGAAAATG+AGG - chr1.4:115791-115810 MS.gene88963:CDS 35.0%
ATCATGTGAACATACTCTTG+TGG + chr1.4:114780-114799 None:intergenic 35.0%
CACCACATACAAGACAAATA+AGG - chr1.4:115147-115166 MS.gene88963:intron 35.0%
CATAATCCATGAAATGTCTC+CGG + chr1.4:115376-115395 None:intergenic 35.0%
CTTGAACAAAATGAGGAACA+TGG - chr1.4:114417-114436 MS.gene88963:CDS 35.0%
GATTTAAGGAAAAATGGGCA+TGG - chr1.4:115584-115603 MS.gene88963:CDS 35.0%
GGATATGATATTTGAATCCG+AGG - chr1.4:114473-114492 MS.gene88963:CDS 35.0%
TCAAATATCATATCCAAGCG+AGG + chr1.4:114468-114487 None:intergenic 35.0%
TCACTAAAGTATGGTGAAGT+GGG - chr1.4:114975-114994 MS.gene88963:CDS 35.0%
TCGAAAGATAGGGAAATACA+AGG - chr1.4:114716-114735 MS.gene88963:intron 35.0%
TTGCATAGATCTAAACGAAG+AGG - chr1.4:115480-115499 MS.gene88963:CDS 35.0%
TTGGTATTCGTCGAGAATAT+GGG - chr1.4:114541-114560 MS.gene88963:CDS 35.0%
TTGTCTACCAAAATAGACGA+CGG + chr1.4:114369-114388 None:intergenic 35.0%
TTTGCTTCGAACAAAAAGGA+TGG - chr1.4:114950-114969 MS.gene88963:intron 35.0%
TTTGGTATTCGTCGAGAATA+TGG - chr1.4:114540-114559 MS.gene88963:CDS 35.0%
! ACCCTTATTTGTCTTGTATG+TGG + chr1.4:115152-115171 None:intergenic 35.0%
! CATCGGCAAACAATCATTTT+TGG - chr1.4:115208-115227 MS.gene88963:CDS 35.0%
! TGATCCGTTAGAATGGTTTT+AGG + chr1.4:115316-115335 None:intergenic 35.0%
!! ATTGAGCATAACGTTTTGGA+AGG - chr1.4:115538-115557 MS.gene88963:CDS 35.0%
!! CAATCAAGCGAAGTTGATAA+TGG - chr1.4:115988-116007 MS.gene88963:CDS 35.0%
!! TGCATAAAGGTGTTGAAAGA+AGG - chr1.4:115904-115923 MS.gene88963:CDS 35.0%
!!! ATAACGTTTTGGAAGGTTCA+TGG - chr1.4:115545-115564 MS.gene88963:CDS 35.0%
!!! TTTTGGGGTGTAAACATTTC+TGG + chr1.4:115839-115858 None:intergenic 35.0%
AAAGGGCTGTCAATGGTAAA+CGG - chr1.4:115731-115750 MS.gene88963:CDS 40.0%
AATGGGCATGGACTTATGTT+CGG - chr1.4:115596-115615 MS.gene88963:CDS 40.0%
ACAAAAGACGTCAACCGATT+GGG - chr1.4:114637-114656 MS.gene88963:CDS 40.0%
AGCATCTTGATCCGTTAGAA+TGG + chr1.4:115323-115342 None:intergenic 40.0%
AGTCCAACAAATACTCCCAA+CGG + chr1.4:115181-115200 None:intergenic 40.0%
ATGTCAAGCTACAATCCAAG+GGG - chr1.4:115963-115982 MS.gene88963:CDS 40.0%
CAATGTCAAGCTACAATCCA+AGG - chr1.4:115961-115980 MS.gene88963:CDS 40.0%
CTCACTAAAGTATGGTGAAG+TGG - chr1.4:114974-114993 MS.gene88963:CDS 40.0%
GATATTCCTCGTATTCCTCT+TGG + chr1.4:115876-115895 None:intergenic 40.0%
GCATGAATATATGTCCAAGC+AGG - chr1.4:114881-114900 MS.gene88963:intron 40.0%
! ACTTTTCTCAAAGCAATGGG+TGG - chr1.4:115283-115302 MS.gene88963:CDS 40.0%
! AGGATGGACTCACTAAAGTA+TGG - chr1.4:114966-114985 MS.gene88963:CDS 40.0%
! CACTTTAAAAGGGCTGTCAA+TGG - chr1.4:115724-115743 MS.gene88963:CDS 40.0%
! GCCTTCCTCATTTTCAATCT+AGG + chr1.4:115799-115818 None:intergenic 40.0%
AAATAAGGGTTATCGGCCGT+TGG - chr1.4:115162-115181 MS.gene88963:intron 45.0%
AATAAGGGTTATCGGCCGTT+GGG - chr1.4:115163-115182 MS.gene88963:intron 45.0%
CAAAAGACGTCAACCGATTG+GGG - chr1.4:114638-114657 MS.gene88963:CDS 45.0%
CATACTCTTGTGGCTGAAGA+AGG + chr1.4:114770-114789 None:intergenic 45.0%
GAATATATGTCCAAGCAGGC+TGG - chr1.4:114885-114904 MS.gene88963:intron 45.0%
GACAAAAGACGTCAACCGAT+TGG - chr1.4:114636-114655 MS.gene88963:CDS 45.0%
GGAATTCCAAGAGGAATACG+AGG - chr1.4:115867-115886 MS.gene88963:CDS 45.0%
GTCTACGGCAGAAACTAGAA+CGG - chr1.4:114662-114681 MS.gene88963:intron 45.0%
GTTATGCCGGAGACATTTCA+TGG - chr1.4:115367-115386 MS.gene88963:CDS 45.0%
GTTCGGAAAACATTCACTGC+AGG - chr1.4:115613-115632 MS.gene88963:CDS 45.0%
TCTACGGCAGAAACTAGAAC+GGG - chr1.4:114663-114682 MS.gene88963:intron 45.0%
!! GGGTGTAAACATTTCTGGCT+TGG + chr1.4:115834-115853 None:intergenic 45.0%
AACGGATCAAGATGCTGCGA+TGG - chr1.4:115327-115346 MS.gene88963:CDS 50.0%
AACGGGGTGTAATGCACGTA+TGG - chr1.4:114680-114699 MS.gene88963:intron 50.0%
ACGGGGTGTAATGCACGTAT+GGG - chr1.4:114681-114700 MS.gene88963:intron 50.0%
ACTCTTGTGGCTGAAGAAGG+TGG + chr1.4:114767-114786 None:intergenic 50.0%
ATATGTCCAAGCAGGCTGGT+GGG - chr1.4:114889-114908 MS.gene88963:intron 50.0%
CTACGGCAGAAACTAGAACG+GGG - chr1.4:114664-114683 MS.gene88963:intron 50.0%
CTCTCATCGTCGCATATCTG+AGG - chr1.4:114803-114822 MS.gene88963:intron 50.0%
TATATGTCCAAGCAGGCTGG+TGG - chr1.4:114888-114907 MS.gene88963:intron 50.0%
TCAACCGATTGGGGAGTCTA+CGG - chr1.4:114647-114666 MS.gene88963:CDS 50.0%
TCAAGATGCTGCGATGGCAA+AGG - chr1.4:115333-115352 MS.gene88963:CDS 50.0%
TGACGACATCAAACCTCGCT+TGG - chr1.4:114452-114471 MS.gene88963:CDS 50.0%
CTTCGCTTGATTGTGCCCCT+TGG + chr1.4:115981-116000 None:intergenic 55.0%
GCTGGTGGGATAGAGATGGT+TGG - chr1.4:114903-114922 MS.gene88963:intron 55.0%
TCTGCCGTAGACTCCCCAAT+CGG + chr1.4:114654-114673 None:intergenic 55.0%
!! CGGCCGTTGGGAGTATTTGT+TGG - chr1.4:115175-115194 MS.gene88963:intron 55.0%
CTCTATCCCACCAGCCTGCT+TGG + chr1.4:114898-114917 None:intergenic 60.0%
GCAGGCTGGTGGGATAGAGA+TGG - chr1.4:114899-114918 MS.gene88963:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 114360 116047 114360 ID=MS.gene88963
chr1.4 mRNA 114360 116047 114360 ID=MS.gene88963.t1;Parent=MS.gene88963
chr1.4 exon 115178 116047 115178 ID=MS.gene88963.t1.exon1;Parent=MS.gene88963.t1
chr1.4 CDS 115178 116047 115178 ID=cds.MS.gene88963.t1;Parent=MS.gene88963.t1
chr1.4 exon 114956 115136 114956 ID=MS.gene88963.t1.exon2;Parent=MS.gene88963.t1
chr1.4 CDS 114956 115136 114956 ID=cds.MS.gene88963.t1;Parent=MS.gene88963.t1
chr1.4 exon 114773 114815 114773 ID=MS.gene88963.t1.exon3;Parent=MS.gene88963.t1
chr1.4 CDS 114773 114815 114773 ID=cds.MS.gene88963.t1;Parent=MS.gene88963.t1
chr1.4 exon 114360 114672 114360 ID=MS.gene88963.t1.exon4;Parent=MS.gene88963.t1
chr1.4 CDS 114360 114672 114360 ID=cds.MS.gene88963.t1;Parent=MS.gene88963.t1
Gene Sequence

>MS.gene88963

ATGAATCCGTCGTCTATTTTGGTAGACAATTCTGTTGATAAATTGGTAAACACTATTCTTGAACAAAATGAGGAACATGGACAAGAAAGTATTGACGACATCAAACCTCGCTTGGATATGATATTTGAATCCGAGGTAGCTGCTTATGAATTTTATAATGAGTATAGTAAAAGAATTGGATTTGGTATTCGTCGAGAATATGGGAATAAAAGCAAAAAAGACGGGGTTTTAACTTCAAGAAGATTCACATGCTACAAAGAAGGTACACGAAGTGTTGACAAAAGACGTCAACCGATTGGGGAGTCTACGGCAGAAACTAGAACGGGGTGTAATGCACGTATGGGTATTTCACTTGATCGAAAGATAGGGAAATACAAGGTTGTTGACTTTGTACTAGAACACAACCACCTTCTTCAGCCACAAGAGTATGTTCACATGATTCGCTCTCATCGTCGCATATCTGAGGCACAAGCATCACAAATTATAATGGGAGATGAATCTGGGTTAAGACCAAAAGAATTGCATGAATATATGTCCAAGCAGGCTGGTGGGATAGAGATGGTTGGTTTTACAAGAACAGACGCTAAGAATTTGCTTCGAACAAAAAGGATGGACTCACTAAAGTATGGTGAAGTGGGTGCATTGATGACTTATTTCAAACAAGAAAGCGAAAATCCATCTTTCTTTTATGACTTTCAAATGGATGTTGAAGAGCAAATAACAAACATATTTTGGGCAGATGCACAAATGATCAATGATTATGGGTACTTTGGTGATGTCATCTTGACACCACATACAAGACAAATAAGGGTTATCGGCCGTTGGGAGTATTTGTTGGACTTAATAATCATCGGCAAACAATCATTTTTGGTGCAACATTGTTATATGATGAAACAATACCTTCTTTTCAGTGGTTATTTGAAACTTTTCTCAAAGCAATGGGTGGAAAAAAGCCTAAAACCATTCTAACGGATCAAGATGCTGCGATGGCAAAGGATATTTCTTTAGTTATGCCGGAGACATTTCATGGATTATGTACTTGGCATATAAGACAAAACGCTCTAAGGCATGTGAACCATCTATATCAAAAGAGTAAGCATTTTTGTTCAGATTTTGAAGCTTGCATAGATCTAAACGAAGAGGAAGATGAATTTTTGAATGCATGGAACTCTTTACTTATTGAGCATAACGTTTTGGAAGGTTCATGGTTGCATATGATTTTTCGATTTAAGGAAAAATGGGCATGGACTTATGTTCGGAAAACATTCACTGCAGGTATGAGATCTACGCAATTAAGTGAAAGCTTTAATGCTGATTTGAAAAACCATTTGAAGTCGGATTTAAATTTAGTACAATTTTTTACACACTTTAAAAGGGCTGTCAATGGTAAACGGAACAATGAGTCAGAAGCTGAATATGAGTCAAGACATAAGCTACCTAGATTGAAAATGAGGAAGGCTCGAATGCTCGTCCAAGCCAGAAATGTTTACACCCCAAAAATATTTGAGGAATTCCAAGAGGAATACGAGGAATATCAAGACACTTGCATAAAGGTGTTGAAAGAAGGTTTGTATGCTGTCACAAATTATGATAATGGAGCTCAATGTCAAGCTACAATCCAAGGGGCACAATCAAGCGAAGTTGATAATGGAGCTCAATGTCAAGCTACAATCCAAGGGGCACAATGA
Protein sequence

>MS.gene88963.t1

MNPSSILVDNSVDKLVNTILEQNEEHGQESIDDIKPRLDMIFESEVAAYEFYNEYSKRIGFGIRREYGNKSKKDGVLTSRRFTCYKEGTRSVDKRRQPIGESTAETRTGCNARMGISLDRKIGKYKVVDFVLEHNHLLQPQEYVHMIRSHRRISEAQASQIIMGDESGLRPKELHEYMSKQAGGIEMVGFTRTDAKNLLRTKRMDSLKYGEVGALMTYFKQESENPSFFYDFQMDVEEQITNIFWADAQMINDYGYFGDVILTPHTRQIRVIGRWEYLLDLIIIGKQSFLWLFETFLKAMGGKKPKTILTDQDAAMAKDISLVMPETFHGLCTWHIRQNALRHVNHLYQKRKMGMDLCSENIHCRAVNGKRNNESEAEYESRHKLPRLKMRKARMLVQARNVYTPKIFEEFQEEYEEYQDTCIKVLKEGLYAVTNYDNGAQCQATIQGAQSSEVDNGAQCQATIQGAQ