AlfalfaGEDB | MS.gene89023

M. sativa cultivar XinJiangDaYe / MS.gene89023

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89023.t1	GAU32889.1	44	536	131	3	41	407	20	555	6.10E-119	438

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89023.t1	Q9SZL8	29.6	216	145	5	72	281	69	283	2.1e-19	98.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89023.t1	A0A2Z6NML7	44.0	536	131	3	41	407	20	555	4.4e-119	438.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene89023.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89023.t1	MTR_1g070355	46.296	270	141	2	1	269	1	267	7.08e-77	252
MS.gene89023.t1	MTR_5g076070	36.170	188	120	0	81	268	58	245	1.13e-39	145
MS.gene89023.t1	MTR_6g022080	34.783	184	120	0	57	240	66	249	2.75e-38	140
MS.gene89023.t1	MTR_2g101460	48.592	142	69	1	40	181	23	160	7.37e-34	127
MS.gene89023.t1	MTR_2g101460	48.592	142	69	1	40	181	13	150	1.20e-33	126
MS.gene89023.t1	MTR_0060s0090	51.163	129	43	2	35	163	35	143	1.43e-33	124
MS.gene89023.t1	MTR_6g463250	48.507	134	48	2	35	162	41	159	1.59e-32	122
MS.gene89023.t1	MTR_7g446520	29.699	266	157	6	8	266	20	262	1.30e-27	113
MS.gene89023.t1	MTR_3g448650	46.429	112	56	1	40	151	50	157	1.12e-26	106
MS.gene89023.t1	MTR_1g052260	44.231	104	58	0	55	158	55	158	4.41e-25	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89023.t1	AT4G38180	29.796	245	158	8	80	317	77	314	9.16e-18	87.0
MS.gene89023.t1	AT5G28530	33.750	160	102	3	82	238	61	219	1.19e-16	83.2
MS.gene89023.t1	AT5G28530	33.750	160	102	3	82	238	61	219	1.19e-16	83.2
MS.gene89023.t1	AT5G28530	33.750	160	102	3	82	238	61	219	1.40e-16	83.2
MS.gene89023.t1	AT5G28530	33.750	160	102	3	82	238	61	219	1.61e-16	83.2
MS.gene89023.t1	AT5G28530	33.750	160	102	3	82	238	61	219	1.61e-16	83.2
MS.gene89023.t1	AT1G10240	28.516	256	161	9	82	318	54	306	8.90e-16	80.9
MS.gene89023.t1	AT1G10240	28.516	256	161	9	82	318	54	306	8.90e-16	80.9

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Find 103 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTTGTAGATGGAACCCA+TGG	0.564415	2.4:+1819544	None:intergenic
AAGAATAAAACAACAGCTGT+TGG	0.534950	2.4:-1819158	MS.gene89023:CDS
AAGGATTTGTATAATCAATC+AGG	0.433589	2.4:-1820523	MS.gene89023:CDS
AATAAACGATCATGTCCTAA+AGG	0.523227	2.4:-1818978	MS.gene89023:CDS
AATCCAATTGCTACGCCTGG+TGG	0.558681	2.4:-1819047	MS.gene89023:CDS
AATGACAATATTAACATCGA+GGG	0.600868	2.4:-1821189	MS.gene89023:CDS
AATGGGGCTAATGAGTGTGA+TGG	0.645283	2.4:-1821126	MS.gene89023:CDS
ACACAAATGGTTCACACTAT+TGG	0.283603	2.4:-1819310	MS.gene89023:CDS
ACAGCAATAATATGATCGCA+AGG	0.619104	2.4:+1819422	None:intergenic
ACAGGGGATTGACCTTGGAG+AGG	0.670051	2.4:-1820831	MS.gene89023:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATAAAACAACAGCTGT+TGG	-	chr2.4:1820954-1820973	MS.gene89023:CDS	30.0%
AATAAACGATCATGTCCTAA+AGG	-	chr2.4:1821134-1821153	MS.gene89023:CDS	30.0%
AATTGGATCAATGAGATGTA+TGG	-	chr2.4:1820201-1820220	MS.gene89023:intron	30.0%
AGATAATATGGATGACAATG+GGG	-	chr2.4:1818970-1818989	MS.gene89023:CDS	30.0%
ATAATCAATCAGGAAGACAA+AGG	-	chr2.4:1819599-1819618	MS.gene89023:intron	30.0%
ATACTGTAGACAAAGATAAG+AGG	-	chr2.4:1819704-1819723	MS.gene89023:intron	30.0%
ATTTCAAATGTTCGTGTCTT+AGG	-	chr2.4:1820649-1820668	MS.gene89023:CDS	30.0%
CACTAAGAAAATCTACAATG+TGG	+	chr2.4:1820917-1820936	None:intergenic	30.0%
CTCGAAATCGAAAATATGTA+AGG	+	chr2.4:1820380-1820399	None:intergenic	30.0%
CTGTGTAAAACTAGATTCTT+GGG	+	chr2.4:1820744-1820763	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	1818890	1821244	1818890	ID=MS.gene89023
chr2.4	mRNA	1818890	1821244	1818890	ID=MS.gene89023.t1;Parent=MS.gene89023
chr2.4	exon	1820442	1821244	1820442	ID=MS.gene89023.t1.exon1;Parent=MS.gene89023.t1
chr2.4	CDS	1820442	1821244	1820442	ID=cds.MS.gene89023.t1;Parent=MS.gene89023.t1
chr2.4	exon	1818890	1819589	1818890	ID=MS.gene89023.t1.exon2;Parent=MS.gene89023.t1
chr2.4	CDS	1818890	1819589	1818890	ID=cds.MS.gene89023.t1;Parent=MS.gene89023.t1

Gene Sequence

>MS.gene89023

ATGGAGGAGGTAACAGAAAGTTCAGCTGACAGTAATGACAATATTAACATCGAGGGAATGGACGAAGCTTCAGACGAAGGAGATAATATGGATGACAATGGGGCTAATGAGTGTGATGGAGATTTAGAAGCGAGTAGCGATTCATCCGAGTCTAATGGGAATGCTATAGTCATAAATGGCATCGGTGATATTTTAAAGATGGACATGAAAAACATTTCTGTAGATGTAGTTGAAAGGTTTGACTTTGCTGATTTAGATGTTGCATATAATTTCTACTCATGGTATGCAAGGATAAACGGATTTTCTGTTCGGAAGACCCAAGTTCTGAGGGACCGTTTGGGTAATGTTCTGCAGCAAACTTTTGTTTGTTCGCGGGAAGGTTTTAGAGAGAACAGGGGATTGACCTTGGAGAGGCGGAAGCGAGAACCCAGAAATGATACCAGGTGTGGATGTTCTGCAAAATGTCGTGTCCACATAGACATTGTTTCGAAGCGTTGGTATGTGACCGTATTTGAATTTGCGCATAACCATGAGCTGTTGGATGGTTTGCTATGTGGTCTTTTACCGGCACATAGAAAGCTAACACCAACTGATTTGATTGAGATTGAAAAGTATAAGAATGTTGGTGTAAGACCATATCAAACGTATGGTGCAATGGCTAATTCATCAGGTGGTTTTCACAAGTTAGGTTTTGTGAAAAAGGATTTGTATAATCAATCAGGAAGACAAAGGAAATTAGTTTCATCTGACTCTTGCGGTGCACTGAAGTATCTTCATATGCTTCGTACAAAAGACCCTTTAATGTATGTTGCACATACTGTAGACAAAGATAAGAGGCTTGAACGTCTTTTTTGGTGTGATGGAGAAAGTCGTATGAATTATGAAATTTTTGGTGATGTATTGGCCTTTGATGCAACCTATAGGAAAAACAAATACAATTGCCTGTTTGTTATTTTCTCCGGTGTTAATCATCATAACCAAACTGTTGTCTTTGCGACAGGTTTAGTTACGAGAGAGACGGAAGAGACATATGTTTGGTTGTTGGACCAATTCGCGACTGCTATGAATGGTAAGGCTCCTTTATCCGTAATAACTGACGGTGATGTTGCTATGAAAAATGCCATAAAGAGTATATTTCCAAAAGCACATCATAGATTATGTGCTTGGCATCTTCTACGGAATGCATCATCGAATGTTGGGATTACTGATTTCATGTCATATCTTAAAAGATGCATGTTGGGTGATATGGAAGTGAATAAGTTTGAAGAACTATGGGAAGAGATGGTTGAAAAATTTGGTCTGCAAGACAACAATTGGATCAATGAGATGTATGGAAAAAAAAGAATGTGGGCGACTGCTCATATCAAAGGAGAATTTTTTGCAGGTATACGAACCACGTCTCGGTGTGAGGGTTTACATAGTCACATAGGCCAGTTTGTGCATTCAAGAATTAACTTGACTGATTTTGTCCAGCAATTTCATAGGTGCCTTACATATTTTCGATTTCGAGAGATTGAGTCCGACTATCATTCCAACTATGGTCAACCCGTATTGCAAACTAGTTTGCGATTCATTGAGAGATCAGCAACGAACCAGTTTACAAGGGAGATTTTCTTCCTTTTTCGTAATGCTTTGAAAAAATCTTTGATGTTGAGAATTATTGAAATTCAAGAGATGTCCATGGGTTCCATCTACAAAGTTTCAAAGTACTGTGGAAATGGAAGTGTCTGGCACGTTACACATTGTGAAACTCCTGTAGATTTCAAATGTTCGTGTCTTAGGATGGAGTCGTTTGGACTGCCTTGCGATCATATTATTGCTGTTTTGATGTATCTGGATTTTGATCACCTTCCCAAGAATCTAGTTTTACACAGGTGGACAAAGTTCGCTACAGATACAGTTCGAGCAAGATACACAAATGGTTCACACTATTGGGATTCTCAAATTGCTTCAAGGTATGCGGGAATTATTCAGTTGTCGAAGGATGTGGCTGAGAGGGTTTATCAAGATGTAGAAGAGTACAACCACATTGTAGATTTTCTTAGTGCTGAACTTTTGAGGTTGAAGAATAAAACAACAGCTGTTGGTATTGATGCTAGCACTGGGGTACAAAATGTAGTCGTCGACGAAAGTTTACTGGACCCTGCTTGTGTGAGGACTAAAGGGTGTGGATCTAATCCAATTGCTACGCCTGGTGGAAGTAGGCGTCCTCAATCATGTAGTCAGTGTGGTGTGATAGGACACAATAAACGATCATGTCCTAAAGGAGTCAACAACGGTGAAAATGCATGCACTTCTAGTGCAACAATTTATGAAATTAATGAAGATGATGAAGAAGGAGATCTTGAGCTGTGA

Protein sequence

>MS.gene89023.t1

MEEVTESSADSNDNINIEGMDEASDEGDNMDDNGANECDGDLEASSDSSESNGNAIVINGIGDILKMDMKNISVDVVERFDFADLDVAYNFYSWYARINGFSVRKTQVLRDRLGNVLQQTFVCSREGFRENRGLTLERRKREPRNDTRCGCSAKCRVHIDIVSKRWYVTVFEFAHNHELLDGLLCGLLPAHRKLTPTDLIEIEKYKNVGVRPYQTYGAMANSSGGFHKLGFVKKDLYNQSGRQRKLVSSDSCGALKYLHMLRTKDPLIIIEIQEMSMGSIYKVSKYCGNGSVWHVTHCETPVDFKCSCLRMESFGLPCDHIIAVLMYLDFDHLPKNLVLHRWTKFATDTVRARYTNGSHYWDSQIASRYAGIIQLSKDVAERVYQDVEEYNHIVDFLSAELLRLKNKTTAVGIDASTGVQNVVVDESLLDPACVRTKGCGSNPIATPGGSRRPQSCSQCGVIGHNKRSCPKGVNNGENACTSSATIYEINEDDEEGDLEL