AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89141


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89141.t1 MTR_0856s0010 79.012 162 32 1 1 162 1 160 7.95e-91 276
MS.gene89141.t1 MTR_7g115320 56.164 73 29 1 123 195 6 75 9.58e-21 87.4
MS.gene89141.t1 MTR_1g008290 34.328 134 85 1 96 229 14 144 1.19e-19 86.3
MS.gene89141.t1 MTR_7g446060 40.449 89 51 1 111 199 1 87 1.80e-16 76.6
MS.gene89141.t1 MTR_1g083640 24.254 268 160 9 19 249 24 285 7.56e-14 72.8
MS.gene89141.t1 MTR_6g051425 24.519 208 129 4 44 233 25 222 7.99e-14 73.2
MS.gene89141.t1 MTR_5g039760 28.061 196 115 4 34 226 8 180 1.53e-13 69.7
MS.gene89141.t1 MTR_7g074790 24.852 169 106 2 34 199 8 158 2.15e-13 70.5
MS.gene89141.t1 MTR_0558s0020 23.443 273 166 9 19 254 9 275 3.04e-13 70.9
MS.gene89141.t1 MTR_1g013060 22.170 212 155 4 31 233 19 229 2.67e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89141.t1 AT4G38180 38.889 180 102 3 224 403 463 634 1.52e-29 124
MS.gene89141.t1 AT4G38180 27.046 281 186 8 15 281 47 322 1.42e-19 93.2
MS.gene89141.t1 AT3G22170 30.802 237 152 3 206 440 425 651 2.91e-27 117
MS.gene89141.t1 AT3G22170 25.714 245 142 5 5 233 41 261 5.95e-13 72.4
MS.gene89141.t1 AT3G22170 30.802 237 152 3 206 440 425 651 2.91e-27 117
MS.gene89141.t1 AT3G22170 25.714 245 142 5 5 233 41 261 5.95e-13 72.4
MS.gene89141.t1 AT4G15090 32.512 203 128 2 235 437 447 640 9.34e-27 115
MS.gene89141.t1 AT4G15090 31.780 236 153 6 5 233 18 252 1.26e-22 102
MS.gene89141.t1 AT4G15090 32.512 203 128 2 235 437 447 640 9.34e-27 115
MS.gene89141.t1 AT4G15090 31.780 236 153 6 5 233 18 252 1.26e-22 102
MS.gene89141.t1 AT4G15090 32.512 203 128 2 235 437 447 640 9.34e-27 115
MS.gene89141.t1 AT4G15090 31.780 236 153 6 5 233 18 252 1.26e-22 102
MS.gene89141.t1 AT4G15090 32.512 203 128 2 235 437 447 640 9.34e-27 115
MS.gene89141.t1 AT4G15090 31.780 236 153 6 5 233 18 252 1.26e-22 102
MS.gene89141.t1 AT4G15090 32.512 203 128 2 235 437 447 640 9.34e-27 115
MS.gene89141.t1 AT4G15090 31.780 236 153 6 5 233 18 252 1.26e-22 102
MS.gene89141.t1 AT1G52520 31.250 224 149 4 235 454 467 689 8.71e-25 109
MS.gene89141.t1 AT1G52520 26.866 201 133 6 36 233 85 274 1.75e-12 70.9
MS.gene89141.t1 AT4G38170 33.333 171 109 2 237 407 238 403 7.46e-24 105
MS.gene89141.t1 AT2G32250 31.197 234 150 4 222 453 376 600 2.34e-23 105
MS.gene89141.t1 AT2G32250 31.197 234 150 4 222 453 376 600 2.34e-23 105
MS.gene89141.t1 AT2G32250 31.197 234 150 4 222 453 376 600 2.34e-23 105
MS.gene89141.t1 AT2G32250 31.197 234 150 4 222 453 376 600 2.44e-23 105
MS.gene89141.t1 AT2G32250 31.197 234 150 4 222 453 376 600 2.49e-23 105
MS.gene89141.t1 AT2G32250 31.197 234 150 4 222 453 376 600 2.49e-23 105
MS.gene89141.t1 AT2G32250 31.197 234 150 4 222 453 335 559 2.80e-23 104
MS.gene89141.t1 AT2G32250 31.197 234 150 4 222 453 335 559 2.91e-23 104
MS.gene89141.t1 AT1G76320 31.795 195 122 3 236 430 385 568 3.27e-22 101
MS.gene89141.t1 AT1G76320 29.592 196 129 4 40 233 1 189 1.34e-18 90.1
MS.gene89141.t1 AT1G76320 31.795 195 122 3 236 430 385 568 3.28e-22 101
MS.gene89141.t1 AT1G76320 29.592 196 129 4 40 233 1 189 1.35e-18 90.1
MS.gene89141.t1 AT1G76320 31.795 195 122 3 236 430 385 568 3.28e-22 101
MS.gene89141.t1 AT1G76320 29.592 196 129 4 40 233 1 189 1.35e-18 90.1
MS.gene89141.t1 AT1G76320 31.795 195 122 3 236 430 385 568 3.31e-22 101
MS.gene89141.t1 AT1G76320 29.592 196 129 4 40 233 1 189 1.65e-18 89.7
MS.gene89141.t1 AT2G27110 30.049 203 128 5 242 440 423 615 9.86e-19 90.9
MS.gene89141.t1 AT2G27110 28.972 214 113 8 28 233 41 223 2.99e-11 67.0
MS.gene89141.t1 AT2G27110 30.049 203 128 5 242 440 423 615 9.86e-19 90.9
MS.gene89141.t1 AT2G27110 28.972 214 113 8 28 233 41 223 2.99e-11 67.0
MS.gene89141.t1 AT2G27110 30.049 203 128 5 242 440 278 470 1.02e-18 90.5
MS.gene89141.t1 AT3G06250 31.844 179 111 3 223 401 535 702 4.85e-18 88.6
MS.gene89141.t1 AT3G06250 31.844 179 111 3 223 401 535 702 4.85e-18 88.6
MS.gene89141.t1 AT3G06250 31.844 179 111 3 223 401 535 702 4.85e-18 88.6
MS.gene89141.t1 AT5G18960 31.902 163 106 2 239 401 569 726 8.81e-17 84.3
MS.gene89141.t1 AT5G18960 31.902 163 106 2 239 401 569 726 8.81e-17 84.3
MS.gene89141.t1 AT4G19990 30.256 195 130 2 235 429 338 526 3.23e-16 82.4
MS.gene89141.t1 AT4G19990 30.256 195 130 2 235 429 395 583 3.29e-16 82.8
MS.gene89141.t1 AT4G19990 30.256 195 130 2 235 429 395 583 3.29e-16 82.8
MS.gene89141.t1 AT4G19990 30.256 195 130 2 235 429 395 583 3.68e-16 82.4
MS.gene89141.t1 AT4G19990 30.256 195 130 2 235 429 409 597 3.80e-16 82.4
MS.gene89141.t1 AT4G19990 30.256 195 130 2 235 429 395 583 4.56e-16 82.0
MS.gene89141.t1 AT4G19990 30.256 195 130 2 235 429 395 583 4.56e-16 82.0
MS.gene89141.t1 AT1G80010 26.347 167 117 3 244 407 502 665 4.89e-13 72.4
MS.gene89141.t1 AT3G07500 35.238 105 65 2 35 136 32 136 6.00e-11 62.8

Find 93 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCACATCTCTTTCATTAAA+TGG 0.113358 6.1:+40591321 None:intergenic
TCTATTTCATAGAAGAAATT+TGG 0.144552 6.1:+40591207 None:intergenic
TTGAACAACCTTGCCTTTCT+AGG 0.211285 6.1:+40591465 None:intergenic
GTATACTCATGCTAAATTTA+AGG 0.258580 6.1:-40590398 MS.gene89141:CDS
AGTATACATGCTTTCTTTGA+TGG 0.267857 6.1:-40590580 MS.gene89141:CDS
TGCTCATTGTTTGAATTTAG+AGG 0.299376 6.1:-40590205 MS.gene89141:CDS
CTCTGTTTGGATCGTTTACT+TGG 0.304558 6.1:+40589755 None:intergenic
TTTCTTCTATGAAATAGATT+TGG 0.305934 6.1:-40591202 MS.gene89141:CDS
TCCTCTGCCATCACTCTGTT+TGG 0.325597 6.1:+40589742 None:intergenic
GTGGATTGTGGTAGTACTTA+TGG 0.331695 6.1:-40591849 MS.gene89141:CDS
TGAATTTCAATACCATTGTT+TGG 0.340625 6.1:+40589857 None:intergenic
ATTTGCCACTCTTTCAGAAT+TGG 0.355230 6.1:+40589618 None:intergenic
GTTCAAGGCCAACAAGAAAA+TGG 0.356488 6.1:-40591448 MS.gene89141:CDS
CAATTGTGTCACACAATAAC+TGG 0.362060 6.1:+40590063 None:intergenic
TGAAATTCACAGTCCATTGC+GGG 0.380283 6.1:-40589843 MS.gene89141:CDS
TGTATCAAATTGAAAGAAGA+TGG 0.385199 6.1:-40591537 MS.gene89141:CDS
TTGTCAAACCTCTCCATTTG+TGG 0.385569 6.1:+40590037 None:intergenic
AACAAGGAACGGCGTGCAAT+TGG 0.405287 6.1:-40591288 MS.gene89141:CDS
TAAACCGATGTAAAATTTCA+TGG 0.416870 6.1:+40589948 None:intergenic
AATGTTAAAGAAAGTTTCAA+TGG 0.418875 6.1:-40589890 MS.gene89141:CDS
CAATCTCTGGTTAAAGATGC+AGG 0.432888 6.1:-40591360 MS.gene89141:CDS
TGAACAACCTTGCCTTTCTA+GGG 0.439320 6.1:+40591466 None:intergenic
AGAAAATGGACTTGCATGTA+AGG 0.444990 6.1:-40591434 MS.gene89141:CDS
CTAGTCAAAACATACTTCTC+TGG 0.462491 6.1:+40590127 None:intergenic
CAACCTTGCCTTTCTAGGGC+TGG 0.475224 6.1:+40591470 None:intergenic
TTGAAGACACGTCCGACAAT+GGG 0.482433 6.1:-40591582 MS.gene89141:CDS
TGAATACCACAATTTCTTGT+GGG 0.482502 6.1:-40590456 MS.gene89141:CDS
AATTTGATACAAATCTTAGC+AGG 0.483019 6.1:+40591549 None:intergenic
CCTTTACGTTTAACCCGCAA+TGG 0.484773 6.1:+40589830 None:intergenic
AGCATTCACAACTAAGATCA+TGG 0.486727 6.1:+40590224 None:intergenic
TAGAAAGGCAAGGTTGTTCA+AGG 0.489258 6.1:-40591463 MS.gene89141:CDS
AGAGTTTGAAGACACATCTA+AGG 0.494136 6.1:-40589975 MS.gene89141:CDS
TCATCATACCAGCCCTAGAA+AGG 0.496553 6.1:-40591478 MS.gene89141:CDS
AGAAGATGATGATGCATGTT+GGG 0.497934 6.1:-40591790 MS.gene89141:CDS
ATTCTTGCATGCACAAGAGA+AGG 0.499742 6.1:-40591633 MS.gene89141:CDS
AAGATTAGAACATCGAGAAA+AGG 0.502639 6.1:-40591681 MS.gene89141:CDS
TTCTTCATTGAACATTGTGG+AGG 0.503706 6.1:-40590338 MS.gene89141:CDS
GACACAATTGAAGCCACAAA+TGG 0.507144 6.1:-40590050 MS.gene89141:CDS
TCAAATGTTGTTGTGGATTG+TGG 0.509257 6.1:-40591861 MS.gene89141:CDS
CTGGTATGATGAGAATGATC+AGG 0.514347 6.1:+40591489 None:intergenic
TCTTCATTGAACATTGTGGA+GGG 0.515757 6.1:-40590337 MS.gene89141:CDS
AAGAAGATGATGATGCATGT+TGG 0.516393 6.1:-40591791 MS.gene89141:CDS
CGGCGTGCAATTGGAAAAGA+AGG 0.518535 6.1:-40591279 MS.gene89141:CDS
CATCGAGAAAAGGACGAGAT+GGG 0.520186 6.1:-40591671 MS.gene89141:CDS
ATGAATACCACAATTTCTTG+TGG 0.522525 6.1:-40590457 MS.gene89141:CDS
TATGTGTGTGTGCTCAAGAA+AGG 0.531946 6.1:-40590162 MS.gene89141:CDS
TATGGTGAAGGTATAGAAGT+TGG 0.532672 6.1:-40591831 MS.gene89141:CDS
CTTTGCCACATATCATGTGT+TGG 0.534557 6.1:-40590311 MS.gene89141:CDS
ACATCGAGAAAAGGACGAGA+TGG 0.535829 6.1:-40591672 MS.gene89141:CDS
GGATAGTTCAAATGTTGTTG+TGG 0.550233 6.1:-40591868 MS.gene89141:CDS
GTGTTGGAGGATGTGTTAGT+TGG 0.553858 6.1:-40590295 MS.gene89141:CDS
TCAATTGTAGCATTCCTGGC+GGG 0.561639 6.1:+40589914 None:intergenic
ATTGAAATCAATGATGATGC+AGG 0.561814 6.1:-40591405 MS.gene89141:CDS
CCATTGCGGGTTAAACGTAA+AGG 0.562059 6.1:-40589830 MS.gene89141:CDS
TAGCATGAGTATACTCACCT+TGG 0.569281 6.1:+40590407 None:intergenic
TGTGGTAGTACTTATGGTGA+AGG 0.574977 6.1:-40591843 MS.gene89141:CDS
TTCTTGCATGCACAAGAGAA+GGG 0.575717 6.1:-40591632 MS.gene89141:CDS
TGCTTCTTCATTGAACATTG+TGG 0.579068 6.1:-40590341 MS.gene89141:CDS
ATTGAAGACACGTCCGACAA+TGG 0.579883 6.1:-40591583 MS.gene89141:CDS
TTGAAATTCACAGTCCATTG+CGG 0.581090 6.1:-40589844 MS.gene89141:CDS
TTACTTCTGATTTACCCGCC+AGG 0.585390 6.1:-40589928 MS.gene89141:CDS
GGAATTATGTTAACAAGGAA+CGG 0.587619 6.1:-40591299 MS.gene89141:CDS
ATCCTCCAACACATGATATG+TGG 0.588817 6.1:+40590306 None:intergenic
ATCGAGAAAAGGACGAGATG+GGG 0.592032 6.1:-40591670 MS.gene89141:CDS
TCAATTGAAAAGCAATTCCA+AGG 0.592270 6.1:-40590424 MS.gene89141:CDS
TGGAAAAGAAGGTGATGGCA+AGG 0.598389 6.1:-40591268 MS.gene89141:CDS
ACATCTATTGATGTTGTAAG+TGG 0.607997 6.1:-40589568 MS.gene89141:CDS
CTACGAGGTTGCTGAAGTAG+CGG 0.610192 6.1:-40589999 MS.gene89141:CDS
ATGTGTGTGTGCTCAAGAAA+GGG 0.610334 6.1:-40590161 MS.gene89141:CDS
TGCCACATATCATGTGTTGG+AGG 0.610932 6.1:-40590308 MS.gene89141:CDS
AATTGAAAGAAGATGGATTG+TGG 0.618386 6.1:-40591530 MS.gene89141:CDS
TCTATTGATGTTGTAAGTGG+TGG 0.618926 6.1:-40589565 MS.gene89141:CDS
AAACGATCCAAACAGAGTGA+TGG 0.620927 6.1:-40589749 MS.gene89141:CDS
GTTTGACCCACAAGAAATTG+TGG 0.621417 6.1:+40590450 None:intergenic
TACTCATGCTAAATTTAAGG+AGG 0.627353 6.1:-40590395 MS.gene89141:CDS
GAGAAAAGGACGAGATGGGG+AGG 0.628028 6.1:-40591667 MS.gene89141:CDS
GCAATTGGAAAAGAAGGTGA+TGG 0.628460 6.1:-40591273 MS.gene89141:CDS
CAATGATGATGCAGGTGTGA+GGG 0.635539 6.1:-40591397 MS.gene89141:CDS
GGACGCCAATTCTGAAAGAG+TGG 0.642480 6.1:-40589623 MS.gene89141:CDS
AAATGGACTTGCATGTAAGG+AGG 0.643265 6.1:-40591431 MS.gene89141:CDS
CTCTGGTTAAAGATGCAGGA+GGG 0.643359 6.1:-40591356 MS.gene89141:CDS
GGTGACTCAAATCCAAACAA+TGG 0.647470 6.1:-40589869 MS.gene89141:CDS
TGTGAGGAATTATGTTAACA+AGG 0.648059 6.1:-40591304 MS.gene89141:CDS
AATTGAAGCCACAAATGGAG+AGG 0.658436 6.1:-40590045 MS.gene89141:CDS
TCAATGATGATGCAGGTGTG+AGG 0.662085 6.1:-40591398 MS.gene89141:CDS
TTCAATTGTAGCATTCCTGG+CGG 0.665213 6.1:+40589913 None:intergenic
TTTGCTAGATGCAAGTACAA+TGG 0.666483 6.1:-40589539 MS.gene89141:CDS
ATACCAGCCCTAGAAAGGCA+AGG 0.674438 6.1:-40591473 MS.gene89141:CDS
TCCAAACAGAGTGATGGCAG+AGG 0.674903 6.1:-40589743 MS.gene89141:CDS
GTTATGCAAGCATTTCTACG+AGG 0.708830 6.1:-40590014 MS.gene89141:CDS
CATTTAATGAAAGAGATGTG+AGG 0.724148 6.1:-40591320 MS.gene89141:CDS
TCTCTGGTTAAAGATGCAGG+AGG 0.725630 6.1:-40591357 MS.gene89141:CDS
ACCGATGTAAAATTTCATGG+AGG 0.733270 6.1:+40589951 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTCTTAAGAAAATATTTTT+GGG - chr6.1:40590766-40590785 MS.gene89141:intron 15.0%
!! AATGTTAAAGAAAGTTTCAA+TGG - chr6.1:40591508-40591527 MS.gene89141:CDS 20.0%
!! GATGGAAGAAAAATATTAAA+AGG - chr6.1:40591293-40591312 MS.gene89141:CDS 20.0%
!! TCTATTTCATAGAAGAAATT+TGG + chr6.1:40590194-40590213 None:intergenic 20.0%
!! TTGACAAAAATAGTTTATCA+AGG + chr6.1:40590156-40590175 None:intergenic 20.0%
!! TTGTAATTACCATGTATATA+TGG - chr6.1:40591715-40591734 MS.gene89141:CDS 20.0%
!! TTTCTTCTATGAAATAGATT+TGG - chr6.1:40590196-40590215 MS.gene89141:CDS 20.0%
!!! AAACTATTTTTGTCAAATGA+AGG - chr6.1:40590160-40590179 MS.gene89141:CDS 20.0%
!!! AAATATTTTCTTAAGAAGGT+TGG + chr6.1:40590764-40590783 None:intergenic 20.0%
!!! CCAAAAATATTTTCTTAAGA+AGG + chr6.1:40590768-40590787 None:intergenic 20.0%
!!! CCTTCTTAAGAAAATATTTT+TGG - chr6.1:40590765-40590784 MS.gene89141:intron 20.0%
!!! GAAAAACACATATCTATTTT+AGG + chr6.1:40589636-40589655 None:intergenic 20.0%
! AATTTGATACAAATCTTAGC+AGG + chr6.1:40589852-40589871 None:intergenic 25.0%
! ATGCAATATCCATATATACA+TGG + chr6.1:40591727-40591746 None:intergenic 25.0%
! GTATACTCATGCTAAATTTA+AGG - chr6.1:40591000-40591019 MS.gene89141:intron 25.0%
! TAAACCGATGTAAAATTTCA+TGG + chr6.1:40591453-40591472 None:intergenic 25.0%
! TGAATTTCAATACCATTGTT+TGG + chr6.1:40591544-40591563 None:intergenic 25.0%
! TGTATCAAATTGAAAGAAGA+TGG - chr6.1:40589861-40589880 MS.gene89141:CDS 25.0%
!! AAAAGGCATATCATATTTGT+TGG + chr6.1:40590324-40590343 None:intergenic 25.0%
!! ACATTTTTCTTTTTGATGGA+GGG + chr6.1:40591597-40591616 None:intergenic 25.0%
!!! AAAGAGTATGCTTTTAGAAA+GGG - chr6.1:40589684-40589703 MS.gene89141:intron 25.0%
!!! AATTTAGAGGTATTTTGTGT+CGG - chr6.1:40591206-40591225 MS.gene89141:CDS 25.0%
!!! CATATGATTTTGAAGAGAAA+TGG - chr6.1:40590660-40590679 MS.gene89141:intron 25.0%
!!! TAAAGAGTATGCTTTTAGAA+AGG - chr6.1:40589683-40589702 MS.gene89141:intron 25.0%
!!! TTAAGAAAATATTTTTGGGC+TGG - chr6.1:40590770-40590789 MS.gene89141:intron 25.0%
!!! TTGTATGGCTTTTTAATTCA+TGG - chr6.1:40590426-40590445 MS.gene89141:CDS 25.0%
AAGATTAGAACATCGAGAAA+AGG - chr6.1:40589717-40589736 MS.gene89141:intron 30.0%
AATCAACATTACTTGGATGT+GGG - chr6.1:40590375-40590394 MS.gene89141:CDS 30.0%
ACATCTATTGATGTTGTAAG+TGG - chr6.1:40591830-40591849 MS.gene89141:CDS 30.0%
AGTATACATGCTTTCTTTGA+TGG - chr6.1:40590818-40590837 MS.gene89141:intron 30.0%
ATGAATACCACAATTTCTTG+TGG - chr6.1:40590941-40590960 MS.gene89141:intron 30.0%
CATTTAATGAAAGAGATGTG+AGG - chr6.1:40590078-40590097 MS.gene89141:CDS 30.0%
CTCACATCTCTTTCATTAAA+TGG + chr6.1:40590080-40590099 None:intergenic 30.0%
GGAATTATGTTAACAAGGAA+CGG - chr6.1:40590099-40590118 MS.gene89141:CDS 30.0%
GTATAATGAGCGTCATAAAT+GGG - chr6.1:40590736-40590755 MS.gene89141:intron 30.0%
TACTCATGCTAAATTTAAGG+AGG - chr6.1:40591003-40591022 MS.gene89141:intron 30.0%
TCAATTGAAAAGCAATTCCA+AGG - chr6.1:40590974-40590993 MS.gene89141:intron 30.0%
TGAATACCACAATTTCTTGT+GGG - chr6.1:40590942-40590961 MS.gene89141:intron 30.0%
TGCTCATTGTTTGAATTTAG+AGG - chr6.1:40591193-40591212 MS.gene89141:CDS 30.0%
TGTATAATGAGCGTCATAAA+TGG - chr6.1:40590735-40590754 MS.gene89141:intron 30.0%
TGTGAGGAATTATGTTAACA+AGG - chr6.1:40590094-40590113 MS.gene89141:CDS 30.0%
TTCTGTTTGTCCAAATTTGT+AGG - chr6.1:40591754-40591773 MS.gene89141:CDS 30.0%
! ACCTCCATGAAATTTTACAT+CGG - chr6.1:40591446-40591465 MS.gene89141:CDS 30.0%
! ATTGAAATCAATGATGATGC+AGG - chr6.1:40589993-40590012 MS.gene89141:CDS 30.0%
! ATTTTCAATTGTAGCATTCC+TGG + chr6.1:40591491-40591510 None:intergenic 30.0%
! GACATTTTTCTTTTTGATGG+AGG + chr6.1:40591598-40591617 None:intergenic 30.0%
! GCAGACATTTTTCTTTTTGA+TGG + chr6.1:40591601-40591620 None:intergenic 30.0%
! TCATGTAAGGAATGTCTTTT+GGG - chr6.1:40590229-40590248 MS.gene89141:CDS 30.0%
! TTCATGTAAGGAATGTCTTT+TGG - chr6.1:40590228-40590247 MS.gene89141:CDS 30.0%
!! AAGCTCAAATTTTTCGATGA+AGG + chr6.1:40590690-40590709 None:intergenic 30.0%
!! AATTGAAAGAAGATGGATTG+TGG - chr6.1:40589868-40589887 MS.gene89141:CDS 30.0%
!!! AGAAGTATGTTTTGACTAGA+TGG - chr6.1:40591275-40591294 MS.gene89141:CDS 30.0%
!!! CTTTTAGAAAGGGTTTTGAA+TGG - chr6.1:40589694-40589713 MS.gene89141:intron 30.0%
AAAATTGCCGAAAAACTCAG+CGG - chr6.1:40590575-40590594 MS.gene89141:CDS 35.0%
ACACCAACAAAAACAGCAAA+AGG + chr6.1:40590341-40590360 None:intergenic 35.0%
ACCGATGTAAAATTTCATGG+AGG + chr6.1:40591450-40591469 None:intergenic 35.0%
AGAGTTTGAAGACACATCTA+AGG - chr6.1:40591423-40591442 MS.gene89141:CDS 35.0%
AGCATTCACAACTAAGATCA+TGG + chr6.1:40591177-40591196 None:intergenic 35.0%
ATTTGCCACTCTTTCAGAAT+TGG + chr6.1:40591783-40591802 None:intergenic 35.0%
CAATCAACATTACTTGGATG+TGG - chr6.1:40590374-40590393 MS.gene89141:CDS 35.0%
CAATTGTGTCACACAATAAC+TGG + chr6.1:40591338-40591357 None:intergenic 35.0%
CATGGTCAATCAACATTACT+TGG - chr6.1:40590368-40590387 MS.gene89141:CDS 35.0%
CTAGTCAAAACATACTTCTC+TGG + chr6.1:40591274-40591293 None:intergenic 35.0%
GCGGATATGGTGATTATAAA+AGG - chr6.1:40590594-40590613 MS.gene89141:intron 35.0%
GGATAGTTCAAATGTTGTTG+TGG - chr6.1:40589530-40589549 MS.gene89141:CDS 35.0%
TATTGTGACTGACCAATGTA+AGG - chr6.1:40590481-40590500 MS.gene89141:CDS 35.0%
TCTATTGATGTTGTAAGTGG+TGG - chr6.1:40591833-40591852 MS.gene89141:CDS 35.0%
TCTTCATTGAACATTGTGGA+GGG - chr6.1:40591061-40591080 MS.gene89141:intron 35.0%
TGCTTCTTCATTGAACATTG+TGG - chr6.1:40591057-40591076 MS.gene89141:intron 35.0%
TTCTTCATTGAACATTGTGG+AGG - chr6.1:40591060-40591079 MS.gene89141:intron 35.0%
TTGAAATTCACAGTCCATTG+CGG - chr6.1:40591554-40591573 MS.gene89141:CDS 35.0%
TTTGCTAGATGCAAGTACAA+TGG - chr6.1:40591859-40591878 MS.gene89141:CDS 35.0%
! AAGAAGATGATGATGCATGT+TGG - chr6.1:40589607-40589626 MS.gene89141:CDS 35.0%
! AGAAAATGGACTTGCATGTA+AGG - chr6.1:40589964-40589983 MS.gene89141:CDS 35.0%
! AGAAGATGATGATGCATGTT+GGG - chr6.1:40589608-40589627 MS.gene89141:CDS 35.0%
! ATGCAAGTCCATTTTCTTGT+TGG + chr6.1:40589961-40589980 None:intergenic 35.0%
! ATTCTTTTTCTGCTCGACTA+CGG + chr6.1:40590901-40590920 None:intergenic 35.0%
! CAACAAGACTTTTCAATCTC+TGG - chr6.1:40590025-40590044 MS.gene89141:CDS 35.0%
! CAAGTAATGTTGATTGACCA+TGG + chr6.1:40590370-40590389 None:intergenic 35.0%
! CATTTTGCATTGCCTTACAT+TGG + chr6.1:40590496-40590515 None:intergenic 35.0%
! TATGGTGAAGGTATAGAAGT+TGG - chr6.1:40589567-40589586 MS.gene89141:CDS 35.0%
! TCAAATGTTGTTGTGGATTG+TGG - chr6.1:40589537-40589556 MS.gene89141:CDS 35.0%
! TGGATGACGATTTTCATGTA+AGG - chr6.1:40590216-40590235 MS.gene89141:CDS 35.0%
! TTTTTCTTTTTGATGGAGGG+CGG + chr6.1:40591594-40591613 None:intergenic 35.0%
!!! ATGCCTTTTGCTGTTTTTGT+TGG - chr6.1:40590335-40590354 MS.gene89141:CDS 35.0%
!!! GGACAATTTTTTCCCATTGT+CGG + chr6.1:40589831-40589850 None:intergenic 35.0%
AAACGATCCAAACAGAGTGA+TGG - chr6.1:40591649-40591668 MS.gene89141:CDS 40.0%
AAGACACAGAGTCGTTTGTA+TGG - chr6.1:40590411-40590430 MS.gene89141:CDS 40.0%
AATTGAAGCCACAAATGGAG+AGG - chr6.1:40591353-40591372 MS.gene89141:CDS 40.0%
ATCCTCCAACACATGATATG+TGG + chr6.1:40591095-40591114 None:intergenic 40.0%
ATGTGTGTGTGCTCAAGAAA+GGG - chr6.1:40591237-40591256 MS.gene89141:CDS 40.0%
ATTCTTGCATGCACAAGAGA+AGG - chr6.1:40589765-40589784 MS.gene89141:CDS 40.0%
CAATCTCTGGTTAAAGATGC+AGG - chr6.1:40590038-40590057 MS.gene89141:CDS 40.0%
CTCTGTTTGGATCGTTTACT+TGG + chr6.1:40591646-40591665 None:intergenic 40.0%
CTGGTATGATGAGAATGATC+AGG + chr6.1:40589912-40589931 None:intergenic 40.0%
CTTTGCCACATATCATGTGT+TGG - chr6.1:40591087-40591106 MS.gene89141:intron 40.0%
GAATTGGCGTCCTACAAATT+TGG + chr6.1:40591767-40591786 None:intergenic 40.0%
GACACAATTGAAGCCACAAA+TGG - chr6.1:40591348-40591367 MS.gene89141:CDS 40.0%
GCAATTGGAAAAGAAGGTGA+TGG - chr6.1:40590125-40590144 MS.gene89141:CDS 40.0%
GGTGACTCAAATCCAAACAA+TGG - chr6.1:40591529-40591548 MS.gene89141:CDS 40.0%
GTTATGCAAGCATTTCTACG+AGG - chr6.1:40591384-40591403 MS.gene89141:CDS 40.0%
GTTCAAGGCCAACAAGAAAA+TGG - chr6.1:40589950-40589969 MS.gene89141:CDS 40.0%
GTTTGACCCACAAGAAATTG+TGG + chr6.1:40590951-40590970 None:intergenic 40.0%
TAGAAAGGCAAGGTTGTTCA+AGG - chr6.1:40589935-40589954 MS.gene89141:CDS 40.0%
TAGCATGAGTATACTCACCT+TGG + chr6.1:40590994-40591013 None:intergenic 40.0%
TATGTGTGTGTGCTCAAGAA+AGG - chr6.1:40591236-40591255 MS.gene89141:CDS 40.0%
TGAAATTCACAGTCCATTGC+GGG - chr6.1:40591555-40591574 MS.gene89141:CDS 40.0%
TGAACAACCTTGCCTTTCTA+GGG + chr6.1:40589935-40589954 None:intergenic 40.0%
TGTGGTAGTACTTATGGTGA+AGG - chr6.1:40589555-40589574 MS.gene89141:CDS 40.0%
TTCAATTGTAGCATTCCTGG+CGG + chr6.1:40591488-40591507 None:intergenic 40.0%
TTCTTGCATGCACAAGAGAA+GGG - chr6.1:40589766-40589785 MS.gene89141:CDS 40.0%
TTGAACAACCTTGCCTTTCT+AGG + chr6.1:40589936-40589955 None:intergenic 40.0%
TTGAGCTTCAGCAGAATCAT+TGG - chr6.1:40590702-40590721 MS.gene89141:intron 40.0%
TTGTCAAACCTCTCCATTTG+TGG + chr6.1:40591364-40591383 None:intergenic 40.0%
TTTGTTGGTGTGAATCACCA+TGG - chr6.1:40590350-40590369 MS.gene89141:CDS 40.0%
! AAATGGACTTGCATGTAAGG+AGG - chr6.1:40589967-40589986 MS.gene89141:CDS 40.0%
! ACCATATCCGCTGAGTTTTT+CGG + chr6.1:40590585-40590604 None:intergenic 40.0%
! AGCAGAATCATTGGTTGACT+GGG - chr6.1:40590711-40590730 MS.gene89141:intron 40.0%
! AGGGCTGCTTATGAGTATTT+TGG - chr6.1:40590266-40590285 MS.gene89141:CDS 40.0%
! GTGGATTGTGGTAGTACTTA+TGG - chr6.1:40589549-40589568 MS.gene89141:CDS 40.0%
ACATCGAGAAAAGGACGAGA+TGG - chr6.1:40589726-40589745 MS.gene89141:intron 45.0%
ATCGAGAAAAGGACGAGATG+GGG - chr6.1:40589728-40589747 MS.gene89141:intron 45.0%
ATTGAAGACACGTCCGACAA+TGG - chr6.1:40589815-40589834 MS.gene89141:CDS 45.0%
CATCGAGAAAAGGACGAGAT+GGG - chr6.1:40589727-40589746 MS.gene89141:intron 45.0%
CCTTTACGTTTAACCCGCAA+TGG + chr6.1:40591571-40591590 None:intergenic 45.0%
CTCTGGTTAAAGATGCAGGA+GGG - chr6.1:40590042-40590061 MS.gene89141:CDS 45.0%
GGCAATGCAAAATGCAATCG+AGG - chr6.1:40590502-40590521 MS.gene89141:CDS 45.0%
GGTCAGTCACAATACCAACA+GGG + chr6.1:40590475-40590494 None:intergenic 45.0%
GTCAGTCACAATACCAACAG+GGG + chr6.1:40590474-40590493 None:intergenic 45.0%
GTGTTGGAGGATGTGTTAGT+TGG - chr6.1:40591103-40591122 MS.gene89141:intron 45.0%
TATGCCATAAACACCACCTG+TGG + chr6.1:40590547-40590566 None:intergenic 45.0%
TCAATTGTAGCATTCCTGGC+GGG + chr6.1:40591487-40591506 None:intergenic 45.0%
TCAGTCACAATACCAACAGG+GGG + chr6.1:40590473-40590492 None:intergenic 45.0%
TCATCATACCAGCCCTAGAA+AGG - chr6.1:40589920-40589939 MS.gene89141:CDS 45.0%
TCATGGCTTCGTTGTATGCT+GGG - chr6.1:40590443-40590462 MS.gene89141:CDS 45.0%
TCTCTGGTTAAAGATGCAGG+AGG - chr6.1:40590041-40590060 MS.gene89141:CDS 45.0%
TGCCACATATCATGTGTTGG+AGG - chr6.1:40591090-40591109 MS.gene89141:intron 45.0%
TGGTCAGTCACAATACCAAC+AGG + chr6.1:40590476-40590495 None:intergenic 45.0%
TTACTTCTGATTTACCCGCC+AGG - chr6.1:40591470-40591489 MS.gene89141:CDS 45.0%
TTCATGGCTTCGTTGTATGC+TGG - chr6.1:40590442-40590461 MS.gene89141:CDS 45.0%
TTGAAGACACGTCCGACAAT+GGG - chr6.1:40589816-40589835 MS.gene89141:CDS 45.0%
TTGGGCTGATGCAAGAAGTA+GGG - chr6.1:40590247-40590266 MS.gene89141:CDS 45.0%
TTTGGGCTGATGCAAGAAGT+AGG - chr6.1:40590246-40590265 MS.gene89141:CDS 45.0%
! CAATGATGATGCAGGTGTGA+GGG - chr6.1:40590001-40590020 MS.gene89141:CDS 45.0%
! CAGCAGAATCATTGGTTGAC+TGG - chr6.1:40590710-40590729 MS.gene89141:intron 45.0%
! CCATTGCGGGTTAAACGTAA+AGG - chr6.1:40591568-40591587 MS.gene89141:CDS 45.0%
! TCAATGATGATGCAGGTGTG+AGG - chr6.1:40590000-40590019 MS.gene89141:CDS 45.0%
! TGGAAAAGAAGGTGATGGCA+AGG - chr6.1:40590130-40590149 MS.gene89141:CDS 45.0%
AACAAGGAACGGCGTGCAAT+TGG - chr6.1:40590110-40590129 MS.gene89141:CDS 50.0%
ATACCAGCCCTAGAAAGGCA+AGG - chr6.1:40589925-40589944 MS.gene89141:CDS 50.0%
CGGCGTGCAATTGGAAAAGA+AGG - chr6.1:40590119-40590138 MS.gene89141:CDS 50.0%
CTACGAGGTTGCTGAAGTAG+CGG - chr6.1:40591399-40591418 MS.gene89141:CDS 50.0%
GCCGAAAAACTCAGCGGATA+TGG - chr6.1:40590581-40590600 MS.gene89141:CDS 50.0%
TCCAAACAGAGTGATGGCAG+AGG - chr6.1:40591655-40591674 MS.gene89141:CDS 50.0%
TCCTCTGCCATCACTCTGTT+TGG + chr6.1:40591659-40591678 None:intergenic 50.0%
! CTTGGATGTGGGTTGCTATC+AGG - chr6.1:40590386-40590405 MS.gene89141:CDS 50.0%
! GGACGCCAATTCTGAAAGAG+TGG - chr6.1:40591775-40591794 MS.gene89141:CDS 50.0%
! TTTTCCCTACAACTCGCCAC+AGG - chr6.1:40590528-40590547 MS.gene89141:CDS 50.0%
ACCACCTGTGGCGAGTTGTA+GGG + chr6.1:40590535-40590554 None:intergenic 55.0%
CTCGCCACAGGTGGTGTTTA+TGG - chr6.1:40590540-40590559 MS.gene89141:CDS 55.0%
GAGAAAAGGACGAGATGGGG+AGG - chr6.1:40589731-40589750 MS.gene89141:intron 55.0%
!! CAACCTTGCCTTTCTAGGGC+TGG + chr6.1:40589931-40589950 None:intergenic 55.0%
ATGCTGGGAAAGCCCCCTGT+TGG - chr6.1:40590458-40590477 MS.gene89141:CDS 60.0%
CACCACCTGTGGCGAGTTGT+AGG + chr6.1:40590536-40590555 None:intergenic 60.0%
TCCCTACAACTCGCCACAGG+TGG - chr6.1:40590531-40590550 MS.gene89141:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 40589528 40591892 40589528 ID=MS.gene89141
chr6.1 mRNA 40589528 40591892 40589528 ID=MS.gene89141.t1;Parent=MS.gene89141
chr6.1 exon 40591188 40591892 40591188 ID=MS.gene89141.t1.exon1;Parent=MS.gene89141.t1
chr6.1 CDS 40591188 40591892 40591188 ID=cds.MS.gene89141.t1;Parent=MS.gene89141.t1
chr6.1 exon 40589736 40590611 40589736 ID=MS.gene89141.t1.exon2;Parent=MS.gene89141.t1
chr6.1 CDS 40589736 40590611 40589736 ID=cds.MS.gene89141.t1;Parent=MS.gene89141.t1
chr6.1 exon 40589528 40589644 40589528 ID=MS.gene89141.t1.exon3;Parent=MS.gene89141.t1
chr6.1 CDS 40589528 40589644 40589528 ID=cds.MS.gene89141.t1;Parent=MS.gene89141.t1
Gene Sequence

>MS.gene89141

ATGGATAGTTCAAATGTTGTTGTGGATTGTGGTAGTACTTATGGTGAAGGTATAGAAGTTGGCAGCTTTAATGTTGAAGAAGAAGATGATGATGCATGTTGGGAGCCTAAAATAGATATGTGTTTTTCTAGCTTAGATGAAGTTAAATCATTTTATAAAGAGTATGCTTTTAGAAAGGGTTTTGAATGGAAGATTAGAACATCGAGAAAAGGACGAGATGGGGAGGTCTGCTACTTAATTCTTGCATGCACAAGAGAAGGGTCTCAAGTGACAAAAAGTCTGTGTACATTGAAGACACGTCCGACAATGGGAAAAAATTGTCCTGCTAAGATTTGTATCAAATTGAAAGAAGATGGATTGTGGTACATTCAAAAATTTGAACCTGATCATTCTCATCATACCAGCCCTAGAAAGGCAAGGTTGTTCAAGGCCAACAAGAAAATGGACTTGCATGTAAGGAGGACAATTGAAATCAATGATGATGCAGGTGTGAGGGTCAACAAGACTTTTCAATCTCTGGTTAAAGATGCAGGAGGGTATGAAAATACTCCATTTAATGAAAGAGATGTGAGGAATTATGTTAACAAGGAACGGCGTGCAATTGGAAAAGAAGGTGATGGCAAGGCCTTGATAAACTATTTTTGTCAAATGAAGGAAGAAAATCCAAATTTCTTCTATGAAATAGATTTGGATGACGATTTTCATGTAAGGAATGTCTTTTGGGCTGATGCAAGAAGTAGGGCTGCTTATGAGTATTTTGGAGATGTTGTAACTTTCGACACAACATATTTGACCAACAAATATGATATGCCTTTTGCTGTTTTTGTTGGTGTGAATCACCATGGTCAATCAACATTACTTGGATGTGGGTTGCTATCAGGAGAAGACACAGAGTCGTTTGTATGGCTTTTTAATTCATGGCTTCGTTGTATGCTGGGAAAGCCCCCTGTTGGTATTGTGACTGACCAATGTAAGGCAATGCAAAATGCAATCGAGGCAGTTTTCCCTACAACTCGCCACAGGTGGTGTTTATGGCATATAATGAAAAAAATTGCCGAAAAACTCAGCGGATATGGTGATTATAAAAGGATTAAGTTTGCAATGAAAGAAGCTGTTTATGATACGTTTACAACATATGATTTTGAAGAGAAATGGTGTTCCTTCATCGAAAAATTTGAGCTTCAGCAGAATCATTGGTTGACTGGGTTGTATAATGAGCGTCATAAATGGGTACCAACCTTCTTAAGAAAATATTTTTGGGCTGGTATGTCAACAACTCAGCGAAGTGAGAGTATACATGCTTTCTTTGATGGTTATATCAATTCAACGACAAGTCTAAATCAATTTACGAAACAATATGATAATGCTCTCCGTAGTCGAGCAGAAAAAGAATTTGAAGCTGATTTTAATTCGATGAATACCACAATTTCTTGTGGGTCAAACTCGTCAATTGAAAAGCAATTCCAAGGTGAGTATACTCATGCTAAATTTAAGGAGGTTCAAGTTGAATTTAGATCTAAAGTGAATTGTGCTTCTTCATTGAACATTGTGGAGGGCTGCTTTGCCACATATCATGTGTTGGAGGATGTGTTAGTTGGTGATAGAACGAAAGAACATGTATTTAAAGTTGTGTTTAATCGAGAAAACCATGATCTTAGTTGTGAATGCTCATTGTTTGAATTTAGAGGTATTTTGTGTCGGCATGTGTTATGTGTGTGTGCTCAAGAAAGGGTTAAAAACGTACCAGAGAAGTATGTTTTGACTAGATGGAAGAAAAATATTAAAAGGAAGCATACATATATTAAGACCAGTTATTGTGTGACACAATTGAAGCCACAAATGGAGAGGTTTGACAAGTTATGCAAGCATTTCTACGAGGTTGCTGAAGTAGCGGCAGAGTTTGAAGACACATCTAAGGACCTCCATGAAATTTTACATCGGTTTACTTCTGATTTACCCGCCAGGAATGCTACAATTGAAAATGTTAAAGAAAGTTTCAATGGTGACTCAAATCCAAACAATGGTATTGAAATTCACAGTCCATTGCGGGTTAAACGTAAAGGCCGCCCTCCATCAAAAAGAAAAATGTCTGCAATCGAAAAAGTTGTTAAGAAGCCAAGTAAACGATCCAAACAGAGTGATGGCAGAGGAACTAATGTATGTTTTATTTTATTTTATTTTTAAGTTTTGTAATTACCATGTATATATGGATATTGCATCTTAATTTTCTGTTTGTCCAAATTTGTAGGACGCCAATTCTGAAAGAGTGGCAAATCAGTTTGACAACAACATCTACATTGAAACATCTATTGATGTTGTAAGTGGTGGAGATTTGCTAGATGCAAGTACAATGGTAGTTAACTAG

Protein sequence

>MS.gene89141.t1

MDSSNVVVDCGSTYGEGIEVGSFNVEEEDDDACWEPKIDMCFSSLDEVKSFYKEYAFRKGFEWKIRTSRKGRDGEVCYLILACTREGSQVTKSLCTLKTRPTMGKNCPAKICIKLKEDGLWYIQKFEPDHSHHTSPRKARLFKANKKMDLHVRRTIEINDDAGVRVNKTFQSLVKDAGGYENTPFNERDVRNYVNKERRAIGKEGDGKALINYFCQMKEENPNFFYEIDLDDDFHRSESIHAFFDGYINSTTSLNQFTKQYDNALRSRAEKEFEADFNSMNTTISCGSNSSIEKQFQGEYTHAKFKEVQVEFRSKVNCASSLNIVEGCFATYHVLEDVLVGDRTKEHVFKVVFNRENHDLSCECSLFEFRGILCRHVLCVCAQERVKNVPEKYVLTRWKKNIKRKHTYIKTSYCVTQLKPQMERFDKLCKHFYEVAEVAAEFEDTSKDLHEILHRFTSDLPARNATIENVKESFNGDSNPNNGIEIHSPLRVKRKGRPPSKRKMSAIEKVVKKPSKRSKQSDGRGTNDANSERVANQFDNNIYIETSIDVVSGGDLLDASTMVVN