Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89141.t1 | XP_024642224.1 | 63 | 663 | 51 | 2 | 1 | 471 | 1 | 661 | 1.10E-225 | 792.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89141.t1 | Q9SZL8 | 22.6 | 594 | 249 | 10 | 15 | 403 | 47 | 634 | 2.1e-31 | 138.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89141.t1 | A0A2Z6M8U9 | 52.6 | 664 | 122 | 4 | 1 | 475 | 1 | 660 | 3.3e-179 | 637.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene89141.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89141.t1 | MTR_0856s0010 | 79.012 | 162 | 32 | 1 | 1 | 162 | 1 | 160 | 7.95e-91 | 276 |
MS.gene89141.t1 | MTR_7g115320 | 56.164 | 73 | 29 | 1 | 123 | 195 | 6 | 75 | 9.58e-21 | 87.4 |
MS.gene89141.t1 | MTR_1g008290 | 34.328 | 134 | 85 | 1 | 96 | 229 | 14 | 144 | 1.19e-19 | 86.3 |
MS.gene89141.t1 | MTR_7g446060 | 40.449 | 89 | 51 | 1 | 111 | 199 | 1 | 87 | 1.80e-16 | 76.6 |
MS.gene89141.t1 | MTR_1g083640 | 24.254 | 268 | 160 | 9 | 19 | 249 | 24 | 285 | 7.56e-14 | 72.8 |
MS.gene89141.t1 | MTR_6g051425 | 24.519 | 208 | 129 | 4 | 44 | 233 | 25 | 222 | 7.99e-14 | 73.2 |
MS.gene89141.t1 | MTR_5g039760 | 28.061 | 196 | 115 | 4 | 34 | 226 | 8 | 180 | 1.53e-13 | 69.7 |
MS.gene89141.t1 | MTR_7g074790 | 24.852 | 169 | 106 | 2 | 34 | 199 | 8 | 158 | 2.15e-13 | 70.5 |
MS.gene89141.t1 | MTR_0558s0020 | 23.443 | 273 | 166 | 9 | 19 | 254 | 9 | 275 | 3.04e-13 | 70.9 |
MS.gene89141.t1 | MTR_1g013060 | 22.170 | 212 | 155 | 4 | 31 | 233 | 19 | 229 | 2.67e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89141.t1 | AT4G38180 | 38.889 | 180 | 102 | 3 | 224 | 403 | 463 | 634 | 1.52e-29 | 124 |
MS.gene89141.t1 | AT4G38180 | 27.046 | 281 | 186 | 8 | 15 | 281 | 47 | 322 | 1.42e-19 | 93.2 |
MS.gene89141.t1 | AT3G22170 | 30.802 | 237 | 152 | 3 | 206 | 440 | 425 | 651 | 2.91e-27 | 117 |
MS.gene89141.t1 | AT3G22170 | 25.714 | 245 | 142 | 5 | 5 | 233 | 41 | 261 | 5.95e-13 | 72.4 |
MS.gene89141.t1 | AT3G22170 | 30.802 | 237 | 152 | 3 | 206 | 440 | 425 | 651 | 2.91e-27 | 117 |
MS.gene89141.t1 | AT3G22170 | 25.714 | 245 | 142 | 5 | 5 | 233 | 41 | 261 | 5.95e-13 | 72.4 |
MS.gene89141.t1 | AT4G15090 | 32.512 | 203 | 128 | 2 | 235 | 437 | 447 | 640 | 9.34e-27 | 115 |
MS.gene89141.t1 | AT4G15090 | 31.780 | 236 | 153 | 6 | 5 | 233 | 18 | 252 | 1.26e-22 | 102 |
MS.gene89141.t1 | AT4G15090 | 32.512 | 203 | 128 | 2 | 235 | 437 | 447 | 640 | 9.34e-27 | 115 |
MS.gene89141.t1 | AT4G15090 | 31.780 | 236 | 153 | 6 | 5 | 233 | 18 | 252 | 1.26e-22 | 102 |
MS.gene89141.t1 | AT4G15090 | 32.512 | 203 | 128 | 2 | 235 | 437 | 447 | 640 | 9.34e-27 | 115 |
MS.gene89141.t1 | AT4G15090 | 31.780 | 236 | 153 | 6 | 5 | 233 | 18 | 252 | 1.26e-22 | 102 |
MS.gene89141.t1 | AT4G15090 | 32.512 | 203 | 128 | 2 | 235 | 437 | 447 | 640 | 9.34e-27 | 115 |
MS.gene89141.t1 | AT4G15090 | 31.780 | 236 | 153 | 6 | 5 | 233 | 18 | 252 | 1.26e-22 | 102 |
MS.gene89141.t1 | AT4G15090 | 32.512 | 203 | 128 | 2 | 235 | 437 | 447 | 640 | 9.34e-27 | 115 |
MS.gene89141.t1 | AT4G15090 | 31.780 | 236 | 153 | 6 | 5 | 233 | 18 | 252 | 1.26e-22 | 102 |
MS.gene89141.t1 | AT1G52520 | 31.250 | 224 | 149 | 4 | 235 | 454 | 467 | 689 | 8.71e-25 | 109 |
MS.gene89141.t1 | AT1G52520 | 26.866 | 201 | 133 | 6 | 36 | 233 | 85 | 274 | 1.75e-12 | 70.9 |
MS.gene89141.t1 | AT4G38170 | 33.333 | 171 | 109 | 2 | 237 | 407 | 238 | 403 | 7.46e-24 | 105 |
MS.gene89141.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 376 | 600 | 2.34e-23 | 105 |
MS.gene89141.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 376 | 600 | 2.34e-23 | 105 |
MS.gene89141.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 376 | 600 | 2.34e-23 | 105 |
MS.gene89141.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 376 | 600 | 2.44e-23 | 105 |
MS.gene89141.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 376 | 600 | 2.49e-23 | 105 |
MS.gene89141.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 376 | 600 | 2.49e-23 | 105 |
MS.gene89141.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 335 | 559 | 2.80e-23 | 104 |
MS.gene89141.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 335 | 559 | 2.91e-23 | 104 |
MS.gene89141.t1 | AT1G76320 | 31.795 | 195 | 122 | 3 | 236 | 430 | 385 | 568 | 3.27e-22 | 101 |
MS.gene89141.t1 | AT1G76320 | 29.592 | 196 | 129 | 4 | 40 | 233 | 1 | 189 | 1.34e-18 | 90.1 |
MS.gene89141.t1 | AT1G76320 | 31.795 | 195 | 122 | 3 | 236 | 430 | 385 | 568 | 3.28e-22 | 101 |
MS.gene89141.t1 | AT1G76320 | 29.592 | 196 | 129 | 4 | 40 | 233 | 1 | 189 | 1.35e-18 | 90.1 |
MS.gene89141.t1 | AT1G76320 | 31.795 | 195 | 122 | 3 | 236 | 430 | 385 | 568 | 3.28e-22 | 101 |
MS.gene89141.t1 | AT1G76320 | 29.592 | 196 | 129 | 4 | 40 | 233 | 1 | 189 | 1.35e-18 | 90.1 |
MS.gene89141.t1 | AT1G76320 | 31.795 | 195 | 122 | 3 | 236 | 430 | 385 | 568 | 3.31e-22 | 101 |
MS.gene89141.t1 | AT1G76320 | 29.592 | 196 | 129 | 4 | 40 | 233 | 1 | 189 | 1.65e-18 | 89.7 |
MS.gene89141.t1 | AT2G27110 | 30.049 | 203 | 128 | 5 | 242 | 440 | 423 | 615 | 9.86e-19 | 90.9 |
MS.gene89141.t1 | AT2G27110 | 28.972 | 214 | 113 | 8 | 28 | 233 | 41 | 223 | 2.99e-11 | 67.0 |
MS.gene89141.t1 | AT2G27110 | 30.049 | 203 | 128 | 5 | 242 | 440 | 423 | 615 | 9.86e-19 | 90.9 |
MS.gene89141.t1 | AT2G27110 | 28.972 | 214 | 113 | 8 | 28 | 233 | 41 | 223 | 2.99e-11 | 67.0 |
MS.gene89141.t1 | AT2G27110 | 30.049 | 203 | 128 | 5 | 242 | 440 | 278 | 470 | 1.02e-18 | 90.5 |
MS.gene89141.t1 | AT3G06250 | 31.844 | 179 | 111 | 3 | 223 | 401 | 535 | 702 | 4.85e-18 | 88.6 |
MS.gene89141.t1 | AT3G06250 | 31.844 | 179 | 111 | 3 | 223 | 401 | 535 | 702 | 4.85e-18 | 88.6 |
MS.gene89141.t1 | AT3G06250 | 31.844 | 179 | 111 | 3 | 223 | 401 | 535 | 702 | 4.85e-18 | 88.6 |
MS.gene89141.t1 | AT5G18960 | 31.902 | 163 | 106 | 2 | 239 | 401 | 569 | 726 | 8.81e-17 | 84.3 |
MS.gene89141.t1 | AT5G18960 | 31.902 | 163 | 106 | 2 | 239 | 401 | 569 | 726 | 8.81e-17 | 84.3 |
MS.gene89141.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 338 | 526 | 3.23e-16 | 82.4 |
MS.gene89141.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 395 | 583 | 3.29e-16 | 82.8 |
MS.gene89141.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 395 | 583 | 3.29e-16 | 82.8 |
MS.gene89141.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 395 | 583 | 3.68e-16 | 82.4 |
MS.gene89141.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 409 | 597 | 3.80e-16 | 82.4 |
MS.gene89141.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 395 | 583 | 4.56e-16 | 82.0 |
MS.gene89141.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 395 | 583 | 4.56e-16 | 82.0 |
MS.gene89141.t1 | AT1G80010 | 26.347 | 167 | 117 | 3 | 244 | 407 | 502 | 665 | 4.89e-13 | 72.4 |
MS.gene89141.t1 | AT3G07500 | 35.238 | 105 | 65 | 2 | 35 | 136 | 32 | 136 | 6.00e-11 | 62.8 |
Find 93 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCACATCTCTTTCATTAAA+TGG | 0.113358 | 6.1:+40591321 | None:intergenic |
TCTATTTCATAGAAGAAATT+TGG | 0.144552 | 6.1:+40591207 | None:intergenic |
TTGAACAACCTTGCCTTTCT+AGG | 0.211285 | 6.1:+40591465 | None:intergenic |
GTATACTCATGCTAAATTTA+AGG | 0.258580 | 6.1:-40590398 | MS.gene89141:CDS |
AGTATACATGCTTTCTTTGA+TGG | 0.267857 | 6.1:-40590580 | MS.gene89141:CDS |
TGCTCATTGTTTGAATTTAG+AGG | 0.299376 | 6.1:-40590205 | MS.gene89141:CDS |
CTCTGTTTGGATCGTTTACT+TGG | 0.304558 | 6.1:+40589755 | None:intergenic |
TTTCTTCTATGAAATAGATT+TGG | 0.305934 | 6.1:-40591202 | MS.gene89141:CDS |
TCCTCTGCCATCACTCTGTT+TGG | 0.325597 | 6.1:+40589742 | None:intergenic |
GTGGATTGTGGTAGTACTTA+TGG | 0.331695 | 6.1:-40591849 | MS.gene89141:CDS |
TGAATTTCAATACCATTGTT+TGG | 0.340625 | 6.1:+40589857 | None:intergenic |
ATTTGCCACTCTTTCAGAAT+TGG | 0.355230 | 6.1:+40589618 | None:intergenic |
GTTCAAGGCCAACAAGAAAA+TGG | 0.356488 | 6.1:-40591448 | MS.gene89141:CDS |
CAATTGTGTCACACAATAAC+TGG | 0.362060 | 6.1:+40590063 | None:intergenic |
TGAAATTCACAGTCCATTGC+GGG | 0.380283 | 6.1:-40589843 | MS.gene89141:CDS |
TGTATCAAATTGAAAGAAGA+TGG | 0.385199 | 6.1:-40591537 | MS.gene89141:CDS |
TTGTCAAACCTCTCCATTTG+TGG | 0.385569 | 6.1:+40590037 | None:intergenic |
AACAAGGAACGGCGTGCAAT+TGG | 0.405287 | 6.1:-40591288 | MS.gene89141:CDS |
TAAACCGATGTAAAATTTCA+TGG | 0.416870 | 6.1:+40589948 | None:intergenic |
AATGTTAAAGAAAGTTTCAA+TGG | 0.418875 | 6.1:-40589890 | MS.gene89141:CDS |
CAATCTCTGGTTAAAGATGC+AGG | 0.432888 | 6.1:-40591360 | MS.gene89141:CDS |
TGAACAACCTTGCCTTTCTA+GGG | 0.439320 | 6.1:+40591466 | None:intergenic |
AGAAAATGGACTTGCATGTA+AGG | 0.444990 | 6.1:-40591434 | MS.gene89141:CDS |
CTAGTCAAAACATACTTCTC+TGG | 0.462491 | 6.1:+40590127 | None:intergenic |
CAACCTTGCCTTTCTAGGGC+TGG | 0.475224 | 6.1:+40591470 | None:intergenic |
TTGAAGACACGTCCGACAAT+GGG | 0.482433 | 6.1:-40591582 | MS.gene89141:CDS |
TGAATACCACAATTTCTTGT+GGG | 0.482502 | 6.1:-40590456 | MS.gene89141:CDS |
AATTTGATACAAATCTTAGC+AGG | 0.483019 | 6.1:+40591549 | None:intergenic |
CCTTTACGTTTAACCCGCAA+TGG | 0.484773 | 6.1:+40589830 | None:intergenic |
AGCATTCACAACTAAGATCA+TGG | 0.486727 | 6.1:+40590224 | None:intergenic |
TAGAAAGGCAAGGTTGTTCA+AGG | 0.489258 | 6.1:-40591463 | MS.gene89141:CDS |
AGAGTTTGAAGACACATCTA+AGG | 0.494136 | 6.1:-40589975 | MS.gene89141:CDS |
TCATCATACCAGCCCTAGAA+AGG | 0.496553 | 6.1:-40591478 | MS.gene89141:CDS |
AGAAGATGATGATGCATGTT+GGG | 0.497934 | 6.1:-40591790 | MS.gene89141:CDS |
ATTCTTGCATGCACAAGAGA+AGG | 0.499742 | 6.1:-40591633 | MS.gene89141:CDS |
AAGATTAGAACATCGAGAAA+AGG | 0.502639 | 6.1:-40591681 | MS.gene89141:CDS |
TTCTTCATTGAACATTGTGG+AGG | 0.503706 | 6.1:-40590338 | MS.gene89141:CDS |
GACACAATTGAAGCCACAAA+TGG | 0.507144 | 6.1:-40590050 | MS.gene89141:CDS |
TCAAATGTTGTTGTGGATTG+TGG | 0.509257 | 6.1:-40591861 | MS.gene89141:CDS |
CTGGTATGATGAGAATGATC+AGG | 0.514347 | 6.1:+40591489 | None:intergenic |
TCTTCATTGAACATTGTGGA+GGG | 0.515757 | 6.1:-40590337 | MS.gene89141:CDS |
AAGAAGATGATGATGCATGT+TGG | 0.516393 | 6.1:-40591791 | MS.gene89141:CDS |
CGGCGTGCAATTGGAAAAGA+AGG | 0.518535 | 6.1:-40591279 | MS.gene89141:CDS |
CATCGAGAAAAGGACGAGAT+GGG | 0.520186 | 6.1:-40591671 | MS.gene89141:CDS |
ATGAATACCACAATTTCTTG+TGG | 0.522525 | 6.1:-40590457 | MS.gene89141:CDS |
TATGTGTGTGTGCTCAAGAA+AGG | 0.531946 | 6.1:-40590162 | MS.gene89141:CDS |
TATGGTGAAGGTATAGAAGT+TGG | 0.532672 | 6.1:-40591831 | MS.gene89141:CDS |
CTTTGCCACATATCATGTGT+TGG | 0.534557 | 6.1:-40590311 | MS.gene89141:CDS |
ACATCGAGAAAAGGACGAGA+TGG | 0.535829 | 6.1:-40591672 | MS.gene89141:CDS |
GGATAGTTCAAATGTTGTTG+TGG | 0.550233 | 6.1:-40591868 | MS.gene89141:CDS |
GTGTTGGAGGATGTGTTAGT+TGG | 0.553858 | 6.1:-40590295 | MS.gene89141:CDS |
TCAATTGTAGCATTCCTGGC+GGG | 0.561639 | 6.1:+40589914 | None:intergenic |
ATTGAAATCAATGATGATGC+AGG | 0.561814 | 6.1:-40591405 | MS.gene89141:CDS |
CCATTGCGGGTTAAACGTAA+AGG | 0.562059 | 6.1:-40589830 | MS.gene89141:CDS |
TAGCATGAGTATACTCACCT+TGG | 0.569281 | 6.1:+40590407 | None:intergenic |
TGTGGTAGTACTTATGGTGA+AGG | 0.574977 | 6.1:-40591843 | MS.gene89141:CDS |
TTCTTGCATGCACAAGAGAA+GGG | 0.575717 | 6.1:-40591632 | MS.gene89141:CDS |
TGCTTCTTCATTGAACATTG+TGG | 0.579068 | 6.1:-40590341 | MS.gene89141:CDS |
ATTGAAGACACGTCCGACAA+TGG | 0.579883 | 6.1:-40591583 | MS.gene89141:CDS |
TTGAAATTCACAGTCCATTG+CGG | 0.581090 | 6.1:-40589844 | MS.gene89141:CDS |
TTACTTCTGATTTACCCGCC+AGG | 0.585390 | 6.1:-40589928 | MS.gene89141:CDS |
GGAATTATGTTAACAAGGAA+CGG | 0.587619 | 6.1:-40591299 | MS.gene89141:CDS |
ATCCTCCAACACATGATATG+TGG | 0.588817 | 6.1:+40590306 | None:intergenic |
ATCGAGAAAAGGACGAGATG+GGG | 0.592032 | 6.1:-40591670 | MS.gene89141:CDS |
TCAATTGAAAAGCAATTCCA+AGG | 0.592270 | 6.1:-40590424 | MS.gene89141:CDS |
TGGAAAAGAAGGTGATGGCA+AGG | 0.598389 | 6.1:-40591268 | MS.gene89141:CDS |
ACATCTATTGATGTTGTAAG+TGG | 0.607997 | 6.1:-40589568 | MS.gene89141:CDS |
CTACGAGGTTGCTGAAGTAG+CGG | 0.610192 | 6.1:-40589999 | MS.gene89141:CDS |
ATGTGTGTGTGCTCAAGAAA+GGG | 0.610334 | 6.1:-40590161 | MS.gene89141:CDS |
TGCCACATATCATGTGTTGG+AGG | 0.610932 | 6.1:-40590308 | MS.gene89141:CDS |
AATTGAAAGAAGATGGATTG+TGG | 0.618386 | 6.1:-40591530 | MS.gene89141:CDS |
TCTATTGATGTTGTAAGTGG+TGG | 0.618926 | 6.1:-40589565 | MS.gene89141:CDS |
AAACGATCCAAACAGAGTGA+TGG | 0.620927 | 6.1:-40589749 | MS.gene89141:CDS |
GTTTGACCCACAAGAAATTG+TGG | 0.621417 | 6.1:+40590450 | None:intergenic |
TACTCATGCTAAATTTAAGG+AGG | 0.627353 | 6.1:-40590395 | MS.gene89141:CDS |
GAGAAAAGGACGAGATGGGG+AGG | 0.628028 | 6.1:-40591667 | MS.gene89141:CDS |
GCAATTGGAAAAGAAGGTGA+TGG | 0.628460 | 6.1:-40591273 | MS.gene89141:CDS |
CAATGATGATGCAGGTGTGA+GGG | 0.635539 | 6.1:-40591397 | MS.gene89141:CDS |
GGACGCCAATTCTGAAAGAG+TGG | 0.642480 | 6.1:-40589623 | MS.gene89141:CDS |
AAATGGACTTGCATGTAAGG+AGG | 0.643265 | 6.1:-40591431 | MS.gene89141:CDS |
CTCTGGTTAAAGATGCAGGA+GGG | 0.643359 | 6.1:-40591356 | MS.gene89141:CDS |
GGTGACTCAAATCCAAACAA+TGG | 0.647470 | 6.1:-40589869 | MS.gene89141:CDS |
TGTGAGGAATTATGTTAACA+AGG | 0.648059 | 6.1:-40591304 | MS.gene89141:CDS |
AATTGAAGCCACAAATGGAG+AGG | 0.658436 | 6.1:-40590045 | MS.gene89141:CDS |
TCAATGATGATGCAGGTGTG+AGG | 0.662085 | 6.1:-40591398 | MS.gene89141:CDS |
TTCAATTGTAGCATTCCTGG+CGG | 0.665213 | 6.1:+40589913 | None:intergenic |
TTTGCTAGATGCAAGTACAA+TGG | 0.666483 | 6.1:-40589539 | MS.gene89141:CDS |
ATACCAGCCCTAGAAAGGCA+AGG | 0.674438 | 6.1:-40591473 | MS.gene89141:CDS |
TCCAAACAGAGTGATGGCAG+AGG | 0.674903 | 6.1:-40589743 | MS.gene89141:CDS |
GTTATGCAAGCATTTCTACG+AGG | 0.708830 | 6.1:-40590014 | MS.gene89141:CDS |
CATTTAATGAAAGAGATGTG+AGG | 0.724148 | 6.1:-40591320 | MS.gene89141:CDS |
TCTCTGGTTAAAGATGCAGG+AGG | 0.725630 | 6.1:-40591357 | MS.gene89141:CDS |
ACCGATGTAAAATTTCATGG+AGG | 0.733270 | 6.1:+40589951 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTTCTTAAGAAAATATTTTT+GGG | - | chr6.1:40590766-40590785 | MS.gene89141:intron | 15.0% |
!! | AATGTTAAAGAAAGTTTCAA+TGG | - | chr6.1:40591508-40591527 | MS.gene89141:CDS | 20.0% |
!! | GATGGAAGAAAAATATTAAA+AGG | - | chr6.1:40591293-40591312 | MS.gene89141:CDS | 20.0% |
!! | TCTATTTCATAGAAGAAATT+TGG | + | chr6.1:40590194-40590213 | None:intergenic | 20.0% |
!! | TTGACAAAAATAGTTTATCA+AGG | + | chr6.1:40590156-40590175 | None:intergenic | 20.0% |
!! | TTGTAATTACCATGTATATA+TGG | - | chr6.1:40591715-40591734 | MS.gene89141:CDS | 20.0% |
!! | TTTCTTCTATGAAATAGATT+TGG | - | chr6.1:40590196-40590215 | MS.gene89141:CDS | 20.0% |
!!! | AAACTATTTTTGTCAAATGA+AGG | - | chr6.1:40590160-40590179 | MS.gene89141:CDS | 20.0% |
!!! | AAATATTTTCTTAAGAAGGT+TGG | + | chr6.1:40590764-40590783 | None:intergenic | 20.0% |
!!! | CCAAAAATATTTTCTTAAGA+AGG | + | chr6.1:40590768-40590787 | None:intergenic | 20.0% |
!!! | CCTTCTTAAGAAAATATTTT+TGG | - | chr6.1:40590765-40590784 | MS.gene89141:intron | 20.0% |
!!! | GAAAAACACATATCTATTTT+AGG | + | chr6.1:40589636-40589655 | None:intergenic | 20.0% |
! | AATTTGATACAAATCTTAGC+AGG | + | chr6.1:40589852-40589871 | None:intergenic | 25.0% |
! | ATGCAATATCCATATATACA+TGG | + | chr6.1:40591727-40591746 | None:intergenic | 25.0% |
! | GTATACTCATGCTAAATTTA+AGG | - | chr6.1:40591000-40591019 | MS.gene89141:intron | 25.0% |
! | TAAACCGATGTAAAATTTCA+TGG | + | chr6.1:40591453-40591472 | None:intergenic | 25.0% |
! | TGAATTTCAATACCATTGTT+TGG | + | chr6.1:40591544-40591563 | None:intergenic | 25.0% |
! | TGTATCAAATTGAAAGAAGA+TGG | - | chr6.1:40589861-40589880 | MS.gene89141:CDS | 25.0% |
!! | AAAAGGCATATCATATTTGT+TGG | + | chr6.1:40590324-40590343 | None:intergenic | 25.0% |
!! | ACATTTTTCTTTTTGATGGA+GGG | + | chr6.1:40591597-40591616 | None:intergenic | 25.0% |
!!! | AAAGAGTATGCTTTTAGAAA+GGG | - | chr6.1:40589684-40589703 | MS.gene89141:intron | 25.0% |
!!! | AATTTAGAGGTATTTTGTGT+CGG | - | chr6.1:40591206-40591225 | MS.gene89141:CDS | 25.0% |
!!! | CATATGATTTTGAAGAGAAA+TGG | - | chr6.1:40590660-40590679 | MS.gene89141:intron | 25.0% |
!!! | TAAAGAGTATGCTTTTAGAA+AGG | - | chr6.1:40589683-40589702 | MS.gene89141:intron | 25.0% |
!!! | TTAAGAAAATATTTTTGGGC+TGG | - | chr6.1:40590770-40590789 | MS.gene89141:intron | 25.0% |
!!! | TTGTATGGCTTTTTAATTCA+TGG | - | chr6.1:40590426-40590445 | MS.gene89141:CDS | 25.0% |
AAGATTAGAACATCGAGAAA+AGG | - | chr6.1:40589717-40589736 | MS.gene89141:intron | 30.0% | |
AATCAACATTACTTGGATGT+GGG | - | chr6.1:40590375-40590394 | MS.gene89141:CDS | 30.0% | |
ACATCTATTGATGTTGTAAG+TGG | - | chr6.1:40591830-40591849 | MS.gene89141:CDS | 30.0% | |
AGTATACATGCTTTCTTTGA+TGG | - | chr6.1:40590818-40590837 | MS.gene89141:intron | 30.0% | |
ATGAATACCACAATTTCTTG+TGG | - | chr6.1:40590941-40590960 | MS.gene89141:intron | 30.0% | |
CATTTAATGAAAGAGATGTG+AGG | - | chr6.1:40590078-40590097 | MS.gene89141:CDS | 30.0% | |
CTCACATCTCTTTCATTAAA+TGG | + | chr6.1:40590080-40590099 | None:intergenic | 30.0% | |
GGAATTATGTTAACAAGGAA+CGG | - | chr6.1:40590099-40590118 | MS.gene89141:CDS | 30.0% | |
GTATAATGAGCGTCATAAAT+GGG | - | chr6.1:40590736-40590755 | MS.gene89141:intron | 30.0% | |
TACTCATGCTAAATTTAAGG+AGG | - | chr6.1:40591003-40591022 | MS.gene89141:intron | 30.0% | |
TCAATTGAAAAGCAATTCCA+AGG | - | chr6.1:40590974-40590993 | MS.gene89141:intron | 30.0% | |
TGAATACCACAATTTCTTGT+GGG | - | chr6.1:40590942-40590961 | MS.gene89141:intron | 30.0% | |
TGCTCATTGTTTGAATTTAG+AGG | - | chr6.1:40591193-40591212 | MS.gene89141:CDS | 30.0% | |
TGTATAATGAGCGTCATAAA+TGG | - | chr6.1:40590735-40590754 | MS.gene89141:intron | 30.0% | |
TGTGAGGAATTATGTTAACA+AGG | - | chr6.1:40590094-40590113 | MS.gene89141:CDS | 30.0% | |
TTCTGTTTGTCCAAATTTGT+AGG | - | chr6.1:40591754-40591773 | MS.gene89141:CDS | 30.0% | |
! | ACCTCCATGAAATTTTACAT+CGG | - | chr6.1:40591446-40591465 | MS.gene89141:CDS | 30.0% |
! | ATTGAAATCAATGATGATGC+AGG | - | chr6.1:40589993-40590012 | MS.gene89141:CDS | 30.0% |
! | ATTTTCAATTGTAGCATTCC+TGG | + | chr6.1:40591491-40591510 | None:intergenic | 30.0% |
! | GACATTTTTCTTTTTGATGG+AGG | + | chr6.1:40591598-40591617 | None:intergenic | 30.0% |
! | GCAGACATTTTTCTTTTTGA+TGG | + | chr6.1:40591601-40591620 | None:intergenic | 30.0% |
! | TCATGTAAGGAATGTCTTTT+GGG | - | chr6.1:40590229-40590248 | MS.gene89141:CDS | 30.0% |
! | TTCATGTAAGGAATGTCTTT+TGG | - | chr6.1:40590228-40590247 | MS.gene89141:CDS | 30.0% |
!! | AAGCTCAAATTTTTCGATGA+AGG | + | chr6.1:40590690-40590709 | None:intergenic | 30.0% |
!! | AATTGAAAGAAGATGGATTG+TGG | - | chr6.1:40589868-40589887 | MS.gene89141:CDS | 30.0% |
!!! | AGAAGTATGTTTTGACTAGA+TGG | - | chr6.1:40591275-40591294 | MS.gene89141:CDS | 30.0% |
!!! | CTTTTAGAAAGGGTTTTGAA+TGG | - | chr6.1:40589694-40589713 | MS.gene89141:intron | 30.0% |
AAAATTGCCGAAAAACTCAG+CGG | - | chr6.1:40590575-40590594 | MS.gene89141:CDS | 35.0% | |
ACACCAACAAAAACAGCAAA+AGG | + | chr6.1:40590341-40590360 | None:intergenic | 35.0% | |
ACCGATGTAAAATTTCATGG+AGG | + | chr6.1:40591450-40591469 | None:intergenic | 35.0% | |
AGAGTTTGAAGACACATCTA+AGG | - | chr6.1:40591423-40591442 | MS.gene89141:CDS | 35.0% | |
AGCATTCACAACTAAGATCA+TGG | + | chr6.1:40591177-40591196 | None:intergenic | 35.0% | |
ATTTGCCACTCTTTCAGAAT+TGG | + | chr6.1:40591783-40591802 | None:intergenic | 35.0% | |
CAATCAACATTACTTGGATG+TGG | - | chr6.1:40590374-40590393 | MS.gene89141:CDS | 35.0% | |
CAATTGTGTCACACAATAAC+TGG | + | chr6.1:40591338-40591357 | None:intergenic | 35.0% | |
CATGGTCAATCAACATTACT+TGG | - | chr6.1:40590368-40590387 | MS.gene89141:CDS | 35.0% | |
CTAGTCAAAACATACTTCTC+TGG | + | chr6.1:40591274-40591293 | None:intergenic | 35.0% | |
GCGGATATGGTGATTATAAA+AGG | - | chr6.1:40590594-40590613 | MS.gene89141:intron | 35.0% | |
GGATAGTTCAAATGTTGTTG+TGG | - | chr6.1:40589530-40589549 | MS.gene89141:CDS | 35.0% | |
TATTGTGACTGACCAATGTA+AGG | - | chr6.1:40590481-40590500 | MS.gene89141:CDS | 35.0% | |
TCTATTGATGTTGTAAGTGG+TGG | - | chr6.1:40591833-40591852 | MS.gene89141:CDS | 35.0% | |
TCTTCATTGAACATTGTGGA+GGG | - | chr6.1:40591061-40591080 | MS.gene89141:intron | 35.0% | |
TGCTTCTTCATTGAACATTG+TGG | - | chr6.1:40591057-40591076 | MS.gene89141:intron | 35.0% | |
TTCTTCATTGAACATTGTGG+AGG | - | chr6.1:40591060-40591079 | MS.gene89141:intron | 35.0% | |
TTGAAATTCACAGTCCATTG+CGG | - | chr6.1:40591554-40591573 | MS.gene89141:CDS | 35.0% | |
TTTGCTAGATGCAAGTACAA+TGG | - | chr6.1:40591859-40591878 | MS.gene89141:CDS | 35.0% | |
! | AAGAAGATGATGATGCATGT+TGG | - | chr6.1:40589607-40589626 | MS.gene89141:CDS | 35.0% |
! | AGAAAATGGACTTGCATGTA+AGG | - | chr6.1:40589964-40589983 | MS.gene89141:CDS | 35.0% |
! | AGAAGATGATGATGCATGTT+GGG | - | chr6.1:40589608-40589627 | MS.gene89141:CDS | 35.0% |
! | ATGCAAGTCCATTTTCTTGT+TGG | + | chr6.1:40589961-40589980 | None:intergenic | 35.0% |
! | ATTCTTTTTCTGCTCGACTA+CGG | + | chr6.1:40590901-40590920 | None:intergenic | 35.0% |
! | CAACAAGACTTTTCAATCTC+TGG | - | chr6.1:40590025-40590044 | MS.gene89141:CDS | 35.0% |
! | CAAGTAATGTTGATTGACCA+TGG | + | chr6.1:40590370-40590389 | None:intergenic | 35.0% |
! | CATTTTGCATTGCCTTACAT+TGG | + | chr6.1:40590496-40590515 | None:intergenic | 35.0% |
! | TATGGTGAAGGTATAGAAGT+TGG | - | chr6.1:40589567-40589586 | MS.gene89141:CDS | 35.0% |
! | TCAAATGTTGTTGTGGATTG+TGG | - | chr6.1:40589537-40589556 | MS.gene89141:CDS | 35.0% |
! | TGGATGACGATTTTCATGTA+AGG | - | chr6.1:40590216-40590235 | MS.gene89141:CDS | 35.0% |
! | TTTTTCTTTTTGATGGAGGG+CGG | + | chr6.1:40591594-40591613 | None:intergenic | 35.0% |
!!! | ATGCCTTTTGCTGTTTTTGT+TGG | - | chr6.1:40590335-40590354 | MS.gene89141:CDS | 35.0% |
!!! | GGACAATTTTTTCCCATTGT+CGG | + | chr6.1:40589831-40589850 | None:intergenic | 35.0% |
AAACGATCCAAACAGAGTGA+TGG | - | chr6.1:40591649-40591668 | MS.gene89141:CDS | 40.0% | |
AAGACACAGAGTCGTTTGTA+TGG | - | chr6.1:40590411-40590430 | MS.gene89141:CDS | 40.0% | |
AATTGAAGCCACAAATGGAG+AGG | - | chr6.1:40591353-40591372 | MS.gene89141:CDS | 40.0% | |
ATCCTCCAACACATGATATG+TGG | + | chr6.1:40591095-40591114 | None:intergenic | 40.0% | |
ATGTGTGTGTGCTCAAGAAA+GGG | - | chr6.1:40591237-40591256 | MS.gene89141:CDS | 40.0% | |
ATTCTTGCATGCACAAGAGA+AGG | - | chr6.1:40589765-40589784 | MS.gene89141:CDS | 40.0% | |
CAATCTCTGGTTAAAGATGC+AGG | - | chr6.1:40590038-40590057 | MS.gene89141:CDS | 40.0% | |
CTCTGTTTGGATCGTTTACT+TGG | + | chr6.1:40591646-40591665 | None:intergenic | 40.0% | |
CTGGTATGATGAGAATGATC+AGG | + | chr6.1:40589912-40589931 | None:intergenic | 40.0% | |
CTTTGCCACATATCATGTGT+TGG | - | chr6.1:40591087-40591106 | MS.gene89141:intron | 40.0% | |
GAATTGGCGTCCTACAAATT+TGG | + | chr6.1:40591767-40591786 | None:intergenic | 40.0% | |
GACACAATTGAAGCCACAAA+TGG | - | chr6.1:40591348-40591367 | MS.gene89141:CDS | 40.0% | |
GCAATTGGAAAAGAAGGTGA+TGG | - | chr6.1:40590125-40590144 | MS.gene89141:CDS | 40.0% | |
GGTGACTCAAATCCAAACAA+TGG | - | chr6.1:40591529-40591548 | MS.gene89141:CDS | 40.0% | |
GTTATGCAAGCATTTCTACG+AGG | - | chr6.1:40591384-40591403 | MS.gene89141:CDS | 40.0% | |
GTTCAAGGCCAACAAGAAAA+TGG | - | chr6.1:40589950-40589969 | MS.gene89141:CDS | 40.0% | |
GTTTGACCCACAAGAAATTG+TGG | + | chr6.1:40590951-40590970 | None:intergenic | 40.0% | |
TAGAAAGGCAAGGTTGTTCA+AGG | - | chr6.1:40589935-40589954 | MS.gene89141:CDS | 40.0% | |
TAGCATGAGTATACTCACCT+TGG | + | chr6.1:40590994-40591013 | None:intergenic | 40.0% | |
TATGTGTGTGTGCTCAAGAA+AGG | - | chr6.1:40591236-40591255 | MS.gene89141:CDS | 40.0% | |
TGAAATTCACAGTCCATTGC+GGG | - | chr6.1:40591555-40591574 | MS.gene89141:CDS | 40.0% | |
TGAACAACCTTGCCTTTCTA+GGG | + | chr6.1:40589935-40589954 | None:intergenic | 40.0% | |
TGTGGTAGTACTTATGGTGA+AGG | - | chr6.1:40589555-40589574 | MS.gene89141:CDS | 40.0% | |
TTCAATTGTAGCATTCCTGG+CGG | + | chr6.1:40591488-40591507 | None:intergenic | 40.0% | |
TTCTTGCATGCACAAGAGAA+GGG | - | chr6.1:40589766-40589785 | MS.gene89141:CDS | 40.0% | |
TTGAACAACCTTGCCTTTCT+AGG | + | chr6.1:40589936-40589955 | None:intergenic | 40.0% | |
TTGAGCTTCAGCAGAATCAT+TGG | - | chr6.1:40590702-40590721 | MS.gene89141:intron | 40.0% | |
TTGTCAAACCTCTCCATTTG+TGG | + | chr6.1:40591364-40591383 | None:intergenic | 40.0% | |
TTTGTTGGTGTGAATCACCA+TGG | - | chr6.1:40590350-40590369 | MS.gene89141:CDS | 40.0% | |
! | AAATGGACTTGCATGTAAGG+AGG | - | chr6.1:40589967-40589986 | MS.gene89141:CDS | 40.0% |
! | ACCATATCCGCTGAGTTTTT+CGG | + | chr6.1:40590585-40590604 | None:intergenic | 40.0% |
! | AGCAGAATCATTGGTTGACT+GGG | - | chr6.1:40590711-40590730 | MS.gene89141:intron | 40.0% |
! | AGGGCTGCTTATGAGTATTT+TGG | - | chr6.1:40590266-40590285 | MS.gene89141:CDS | 40.0% |
! | GTGGATTGTGGTAGTACTTA+TGG | - | chr6.1:40589549-40589568 | MS.gene89141:CDS | 40.0% |
ACATCGAGAAAAGGACGAGA+TGG | - | chr6.1:40589726-40589745 | MS.gene89141:intron | 45.0% | |
ATCGAGAAAAGGACGAGATG+GGG | - | chr6.1:40589728-40589747 | MS.gene89141:intron | 45.0% | |
ATTGAAGACACGTCCGACAA+TGG | - | chr6.1:40589815-40589834 | MS.gene89141:CDS | 45.0% | |
CATCGAGAAAAGGACGAGAT+GGG | - | chr6.1:40589727-40589746 | MS.gene89141:intron | 45.0% | |
CCTTTACGTTTAACCCGCAA+TGG | + | chr6.1:40591571-40591590 | None:intergenic | 45.0% | |
CTCTGGTTAAAGATGCAGGA+GGG | - | chr6.1:40590042-40590061 | MS.gene89141:CDS | 45.0% | |
GGCAATGCAAAATGCAATCG+AGG | - | chr6.1:40590502-40590521 | MS.gene89141:CDS | 45.0% | |
GGTCAGTCACAATACCAACA+GGG | + | chr6.1:40590475-40590494 | None:intergenic | 45.0% | |
GTCAGTCACAATACCAACAG+GGG | + | chr6.1:40590474-40590493 | None:intergenic | 45.0% | |
GTGTTGGAGGATGTGTTAGT+TGG | - | chr6.1:40591103-40591122 | MS.gene89141:intron | 45.0% | |
TATGCCATAAACACCACCTG+TGG | + | chr6.1:40590547-40590566 | None:intergenic | 45.0% | |
TCAATTGTAGCATTCCTGGC+GGG | + | chr6.1:40591487-40591506 | None:intergenic | 45.0% | |
TCAGTCACAATACCAACAGG+GGG | + | chr6.1:40590473-40590492 | None:intergenic | 45.0% | |
TCATCATACCAGCCCTAGAA+AGG | - | chr6.1:40589920-40589939 | MS.gene89141:CDS | 45.0% | |
TCATGGCTTCGTTGTATGCT+GGG | - | chr6.1:40590443-40590462 | MS.gene89141:CDS | 45.0% | |
TCTCTGGTTAAAGATGCAGG+AGG | - | chr6.1:40590041-40590060 | MS.gene89141:CDS | 45.0% | |
TGCCACATATCATGTGTTGG+AGG | - | chr6.1:40591090-40591109 | MS.gene89141:intron | 45.0% | |
TGGTCAGTCACAATACCAAC+AGG | + | chr6.1:40590476-40590495 | None:intergenic | 45.0% | |
TTACTTCTGATTTACCCGCC+AGG | - | chr6.1:40591470-40591489 | MS.gene89141:CDS | 45.0% | |
TTCATGGCTTCGTTGTATGC+TGG | - | chr6.1:40590442-40590461 | MS.gene89141:CDS | 45.0% | |
TTGAAGACACGTCCGACAAT+GGG | - | chr6.1:40589816-40589835 | MS.gene89141:CDS | 45.0% | |
TTGGGCTGATGCAAGAAGTA+GGG | - | chr6.1:40590247-40590266 | MS.gene89141:CDS | 45.0% | |
TTTGGGCTGATGCAAGAAGT+AGG | - | chr6.1:40590246-40590265 | MS.gene89141:CDS | 45.0% | |
! | CAATGATGATGCAGGTGTGA+GGG | - | chr6.1:40590001-40590020 | MS.gene89141:CDS | 45.0% |
! | CAGCAGAATCATTGGTTGAC+TGG | - | chr6.1:40590710-40590729 | MS.gene89141:intron | 45.0% |
! | CCATTGCGGGTTAAACGTAA+AGG | - | chr6.1:40591568-40591587 | MS.gene89141:CDS | 45.0% |
! | TCAATGATGATGCAGGTGTG+AGG | - | chr6.1:40590000-40590019 | MS.gene89141:CDS | 45.0% |
! | TGGAAAAGAAGGTGATGGCA+AGG | - | chr6.1:40590130-40590149 | MS.gene89141:CDS | 45.0% |
AACAAGGAACGGCGTGCAAT+TGG | - | chr6.1:40590110-40590129 | MS.gene89141:CDS | 50.0% | |
ATACCAGCCCTAGAAAGGCA+AGG | - | chr6.1:40589925-40589944 | MS.gene89141:CDS | 50.0% | |
CGGCGTGCAATTGGAAAAGA+AGG | - | chr6.1:40590119-40590138 | MS.gene89141:CDS | 50.0% | |
CTACGAGGTTGCTGAAGTAG+CGG | - | chr6.1:40591399-40591418 | MS.gene89141:CDS | 50.0% | |
GCCGAAAAACTCAGCGGATA+TGG | - | chr6.1:40590581-40590600 | MS.gene89141:CDS | 50.0% | |
TCCAAACAGAGTGATGGCAG+AGG | - | chr6.1:40591655-40591674 | MS.gene89141:CDS | 50.0% | |
TCCTCTGCCATCACTCTGTT+TGG | + | chr6.1:40591659-40591678 | None:intergenic | 50.0% | |
! | CTTGGATGTGGGTTGCTATC+AGG | - | chr6.1:40590386-40590405 | MS.gene89141:CDS | 50.0% |
! | GGACGCCAATTCTGAAAGAG+TGG | - | chr6.1:40591775-40591794 | MS.gene89141:CDS | 50.0% |
! | TTTTCCCTACAACTCGCCAC+AGG | - | chr6.1:40590528-40590547 | MS.gene89141:CDS | 50.0% |
ACCACCTGTGGCGAGTTGTA+GGG | + | chr6.1:40590535-40590554 | None:intergenic | 55.0% | |
CTCGCCACAGGTGGTGTTTA+TGG | - | chr6.1:40590540-40590559 | MS.gene89141:CDS | 55.0% | |
GAGAAAAGGACGAGATGGGG+AGG | - | chr6.1:40589731-40589750 | MS.gene89141:intron | 55.0% | |
!! | CAACCTTGCCTTTCTAGGGC+TGG | + | chr6.1:40589931-40589950 | None:intergenic | 55.0% |
ATGCTGGGAAAGCCCCCTGT+TGG | - | chr6.1:40590458-40590477 | MS.gene89141:CDS | 60.0% | |
CACCACCTGTGGCGAGTTGT+AGG | + | chr6.1:40590536-40590555 | None:intergenic | 60.0% | |
TCCCTACAACTCGCCACAGG+TGG | - | chr6.1:40590531-40590550 | MS.gene89141:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 40589528 | 40591892 | 40589528 | ID=MS.gene89141 |
chr6.1 | mRNA | 40589528 | 40591892 | 40589528 | ID=MS.gene89141.t1;Parent=MS.gene89141 |
chr6.1 | exon | 40591188 | 40591892 | 40591188 | ID=MS.gene89141.t1.exon1;Parent=MS.gene89141.t1 |
chr6.1 | CDS | 40591188 | 40591892 | 40591188 | ID=cds.MS.gene89141.t1;Parent=MS.gene89141.t1 |
chr6.1 | exon | 40589736 | 40590611 | 40589736 | ID=MS.gene89141.t1.exon2;Parent=MS.gene89141.t1 |
chr6.1 | CDS | 40589736 | 40590611 | 40589736 | ID=cds.MS.gene89141.t1;Parent=MS.gene89141.t1 |
chr6.1 | exon | 40589528 | 40589644 | 40589528 | ID=MS.gene89141.t1.exon3;Parent=MS.gene89141.t1 |
chr6.1 | CDS | 40589528 | 40589644 | 40589528 | ID=cds.MS.gene89141.t1;Parent=MS.gene89141.t1 |
Gene Sequence |
Protein sequence |