Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89222.t1 | XP_003616375.2 | 95.8 | 312 | 12 | 1 | 1 | 312 | 1 | 311 | 5.40E-142 | 513.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89222.t1 | Q9C707 | 77.4 | 106 | 23 | 1 | 208 | 312 | 183 | 288 | 3.2e-34 | 147.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89222.t1 | G7K1Y5 | 95.8 | 312 | 12 | 1 | 1 | 312 | 1 | 311 | 3.9e-142 | 513.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene89222.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89222.t1 | MTR_5g079500 | 97.115 | 312 | 8 | 1 | 1 | 312 | 1 | 311 | 0.0 | 626 |
| MS.gene89222.t1 | MTR_2g021380 | 93.902 | 82 | 4 | 1 | 18 | 99 | 1 | 81 | 1.01e-46 | 154 |
| MS.gene89222.t1 | MTR_3g073460 | 85.714 | 84 | 8 | 3 | 18 | 99 | 1 | 82 | 5.98e-35 | 123 |
| MS.gene89222.t1 | MTR_5g005110 | 46.957 | 115 | 47 | 2 | 173 | 287 | 192 | 292 | 2.56e-25 | 103 |
| MS.gene89222.t1 | MTR_1g106470 | 50.000 | 94 | 41 | 2 | 198 | 287 | 173 | 264 | 2.19e-24 | 100 |
| MS.gene89222.t1 | MTR_1g106460 | 70.000 | 60 | 18 | 0 | 228 | 287 | 247 | 306 | 1.21e-23 | 99.4 |
| MS.gene89222.t1 | MTR_3g103030 | 58.571 | 70 | 29 | 0 | 218 | 287 | 228 | 297 | 1.51e-22 | 95.9 |
| MS.gene89222.t1 | MTR_1g018090 | 62.903 | 62 | 23 | 0 | 226 | 287 | 281 | 342 | 2.55e-22 | 96.3 |
| MS.gene89222.t1 | MTR_8g093500 | 50.000 | 80 | 33 | 1 | 202 | 281 | 104 | 176 | 4.35e-19 | 85.5 |
| MS.gene89222.t1 | MTR_3g101810 | 62.500 | 56 | 21 | 0 | 226 | 281 | 178 | 233 | 2.85e-18 | 83.2 |
| MS.gene89222.t1 | MTR_1g106480 | 60.345 | 58 | 23 | 0 | 232 | 289 | 82 | 139 | 7.80e-18 | 79.3 |
| MS.gene89222.t1 | MTR_7g069590 | 66.038 | 53 | 18 | 0 | 226 | 278 | 33 | 85 | 1.05e-17 | 79.0 |
| MS.gene89222.t1 | MTR_4g131160 | 41.509 | 106 | 58 | 1 | 181 | 282 | 154 | 259 | 3.95e-17 | 81.6 |
| MS.gene89222.t1 | MTR_4g131160 | 41.509 | 106 | 58 | 1 | 181 | 282 | 157 | 262 | 3.98e-17 | 81.6 |
| MS.gene89222.t1 | MTR_1g080890 | 50.769 | 65 | 32 | 0 | 218 | 282 | 192 | 256 | 2.35e-14 | 73.2 |
| MS.gene89222.t1 | MTR_5g017210 | 55.696 | 79 | 33 | 1 | 203 | 281 | 123 | 199 | 6.02e-11 | 62.0 |
| MS.gene89222.t1 | MTR_2g067000 | 43.421 | 76 | 43 | 0 | 206 | 281 | 144 | 219 | 8.10e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89222.t1 | AT5G37800 | 51.980 | 202 | 74 | 6 | 118 | 312 | 109 | 294 | 1.61e-54 | 180 |
| MS.gene89222.t1 | AT1G66470 | 63.265 | 147 | 47 | 2 | 164 | 310 | 147 | 286 | 1.26e-51 | 172 |
| MS.gene89222.t1 | AT2G14760 | 60.000 | 70 | 28 | 0 | 218 | 287 | 236 | 305 | 4.46e-24 | 100 |
| MS.gene89222.t1 | AT4G33880 | 60.000 | 70 | 28 | 0 | 218 | 287 | 265 | 334 | 8.41e-24 | 100 |
| MS.gene89222.t1 | AT1G27740 | 54.430 | 79 | 36 | 0 | 209 | 287 | 157 | 235 | 1.77e-23 | 97.4 |
| MS.gene89222.t1 | AT5G43175 | 58.442 | 77 | 30 | 1 | 213 | 287 | 124 | 200 | 1.81e-23 | 96.7 |
| MS.gene89222.t1 | AT2G14760 | 50.602 | 83 | 28 | 1 | 218 | 287 | 236 | 318 | 1.18e-20 | 91.3 |
| MS.gene89222.t1 | AT5G01305 | 57.576 | 66 | 28 | 0 | 213 | 278 | 31 | 96 | 4.96e-20 | 85.9 |
| MS.gene89222.t1 | AT2G24260 | 50.000 | 86 | 39 | 1 | 218 | 303 | 34 | 115 | 1.99e-19 | 86.3 |
| MS.gene89222.t1 | AT2G24260 | 50.000 | 86 | 39 | 1 | 218 | 303 | 137 | 218 | 1.17e-18 | 85.5 |
| MS.gene89222.t1 | AT4G30980 | 40.678 | 118 | 58 | 3 | 185 | 302 | 104 | 209 | 1.70e-18 | 84.7 |
| MS.gene89222.t1 | AT4G30980 | 40.678 | 118 | 58 | 3 | 185 | 302 | 152 | 257 | 2.86e-18 | 84.7 |
| MS.gene89222.t1 | AT4G00120 | 43.820 | 89 | 48 | 2 | 193 | 281 | 88 | 174 | 9.74e-17 | 77.4 |
| MS.gene89222.t1 | AT5G58010 | 50.000 | 72 | 36 | 0 | 211 | 282 | 91 | 162 | 1.04e-16 | 79.3 |
| MS.gene89222.t1 | AT3G21330 | 58.929 | 56 | 23 | 0 | 226 | 281 | 276 | 331 | 7.32e-16 | 77.8 |
| MS.gene89222.t1 | AT3G50330 | 64.179 | 67 | 22 | 1 | 226 | 292 | 126 | 190 | 1.48e-11 | 63.5 |
| MS.gene89222.t1 | AT5G09750 | 51.250 | 80 | 32 | 1 | 202 | 281 | 109 | 181 | 4.29e-11 | 62.0 |
| MS.gene89222.t1 | AT1G09530 | 28.947 | 190 | 113 | 4 | 112 | 282 | 214 | 400 | 6.64e-11 | 63.5 |
| MS.gene89222.t1 | AT1G09530 | 28.947 | 190 | 113 | 4 | 112 | 282 | 214 | 400 | 6.64e-11 | 63.5 |
| MS.gene89222.t1 | AT1G09530 | 28.947 | 190 | 113 | 4 | 112 | 282 | 214 | 400 | 6.64e-11 | 63.5 |
| MS.gene89222.t1 | AT1G09530 | 28.947 | 190 | 113 | 4 | 112 | 282 | 214 | 400 | 6.64e-11 | 63.5 |
| MS.gene89222.t1 | AT1G09530 | 28.947 | 190 | 113 | 4 | 112 | 282 | 214 | 400 | 6.64e-11 | 63.5 |
| MS.gene89222.t1 | AT1G09530 | 28.947 | 190 | 113 | 4 | 112 | 282 | 214 | 400 | 6.64e-11 | 63.5 |
Find 42 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGCAGCTGATGAATTT+TGG | 0.276615 | 5.4:+55815822 | MS.gene89222:CDS |
| AGCAACACTTTGAGGATCTT+TGG | 0.293258 | 5.4:-55815275 | None:intergenic |
| CTGCAAATTATTGTTCTCAT+TGG | 0.300125 | 5.4:-55814626 | None:intergenic |
| CATGGCTTCTTTGCATTGGC+AGG | 0.350562 | 5.4:-55815211 | None:intergenic |
| ACCATCTTCTTCTTCAATCA+TGG | 0.352580 | 5.4:-55814386 | None:intergenic |
| CTTGAAGAAGCGATCTTCTA+TGG | 0.360051 | 5.4:+55814876 | MS.gene89222:CDS |
| CATTTGGCACAAGTTCTTGT+AGG | 0.374925 | 5.4:-55815432 | None:intergenic |
| GATGGTTCACAAAGCACTAA+TGG | 0.383807 | 5.4:+55814403 | MS.gene89222:CDS |
| AAATCTACCTTGGAACCATT+TGG | 0.388020 | 5.4:-55815448 | None:intergenic |
| AATGCAAAAGAGAAGCAAAA+TGG | 0.391258 | 5.4:+55814751 | MS.gene89222:CDS |
| TTCTTACTTGCAGCTGTGCA+TGG | 0.415931 | 5.4:-55815229 | None:intergenic |
| TGCTTAGCTTTCAACAGAGC+TGG | 0.417572 | 5.4:+55814596 | MS.gene89222:CDS |
| ACCTTGGCAGCAACACTTTG+AGG | 0.436246 | 5.4:-55815283 | None:intergenic |
| TCTCCTACTCTATGCAGAAA+AGG | 0.440008 | 5.4:+55814466 | MS.gene89222:CDS |
| TGTGCATGGCTTCTTTGCAT+TGG | 0.456555 | 5.4:-55815215 | None:intergenic |
| TCCTCAAAGTGTTGCTGCCA+AGG | 0.458152 | 5.4:+55815282 | MS.gene89222:CDS |
| TCGTCATCACAAGGAACATT+TGG | 0.462816 | 5.4:-55814805 | None:intergenic |
| CTCCTACTCTATGCAGAAAA+GGG | 0.464840 | 5.4:+55814467 | MS.gene89222:CDS |
| CTACAAGAACTTGTGCCAAA+TGG | 0.480564 | 5.4:+55815433 | MS.gene89222:CDS |
| GAAACTTCAAGTGGTAGCTA+TGG | 0.482106 | 5.4:+55814715 | MS.gene89222:CDS |
| TTGCACCATGCACAAATTTG+TGG | 0.492109 | 5.4:-55814677 | None:intergenic |
| ACAATGTAGAATGTTGTTGT+TGG | 0.495112 | 5.4:-55814311 | None:intergenic |
| AGAACAATAATTTGCAGCAA+TGG | 0.497897 | 5.4:+55814632 | MS.gene89222:CDS |
| ACAAATTTGTGCATGGTGCA+AGG | 0.520217 | 5.4:+55814679 | MS.gene89222:CDS |
| GAGTCTTTGATTAATTTCAA+AGG | 0.522051 | 5.4:+55814529 | MS.gene89222:CDS |
| GGTTGATTTGGTTACCATGT+TGG | 0.524353 | 5.4:+55815625 | MS.gene89222:intron |
| ACACTTTGAGGATCTTTGGA+TGG | 0.550437 | 5.4:-55815271 | None:intergenic |
| GTTTCTTCAGTTGCAAGTGA+AGG | 0.554782 | 5.4:+55815670 | MS.gene89222:CDS |
| TCATCGTCGTCGTCATCACA+AGG | 0.575313 | 5.4:-55814814 | None:intergenic |
| GGTGGAAAAGCTCCTGACAT+TGG | 0.579618 | 5.4:+55815854 | MS.gene89222:CDS |
| TAGCTTTCAACAGAGCTGGA+TGG | 0.582750 | 5.4:+55814600 | MS.gene89222:CDS |
| AGAAGATCGCTTCTTCAAGA+CGG | 0.585959 | 5.4:-55814872 | None:intergenic |
| CAAAATGGTGAAAGTTCATG+TGG | 0.590862 | 5.4:+55814766 | MS.gene89222:CDS |
| ACTAATTGCTTTCTCCAACA+TGG | 0.596287 | 5.4:-55815639 | None:intergenic |
| AATAGCTTTGAAACTTCAAG+TGG | 0.597044 | 5.4:+55814706 | MS.gene89222:CDS |
| ACTTGTGCCAAATGGTTCCA+AGG | 0.597324 | 5.4:+55815441 | MS.gene89222:CDS |
| TAGAGTAGGAGAATTTGTAA+TGG | 0.598886 | 5.4:-55814455 | None:intergenic |
| GAAGAGAGAGAATAAGTGAG+AGG | 0.626364 | 5.4:+55815401 | MS.gene89222:CDS |
| TCCATGATTGAAGAAGAAGA+TGG | 0.626690 | 5.4:+55814385 | MS.gene89222:CDS |
| ATGGTGAAAGTTCATGTGGA+TGG | 0.626785 | 5.4:+55814770 | MS.gene89222:CDS |
| AAGCACCACAAATTTGTGCA+TGG | 0.631725 | 5.4:+55814672 | MS.gene89222:CDS |
| TATTACAACAATCTCATGCA+AGG | 0.641770 | 5.4:+55814562 | MS.gene89222:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTAATAAAATTAA+CGG | - | chr5.4:55815087-55815106 | None:intergenic | 0.0% |
| !! | CAAATTATTAGAACATATTT+AGG | + | chr5.4:55815107-55815126 | MS.gene89222:intron | 15.0% |
| !! | AATCAAAACATGATATAACT+TGG | - | chr5.4:55815320-55815339 | None:intergenic | 20.0% |
| !! | ATCAAAACATGATATAACTT+GGG | - | chr5.4:55815319-55815338 | None:intergenic | 20.0% |
| !!! | TTTTGTTCTATATTTGTTCA+TGG | + | chr5.4:55815793-55815812 | MS.gene89222:intron | 20.0% |
| ! | ACTAATTTCAAAATCTACCT+TGG | - | chr5.4:55815461-55815480 | None:intergenic | 25.0% |
| ! | CAATTATGTGCAATATATCA+AGG | - | chr5.4:55814968-55814987 | None:intergenic | 25.0% |
| ! | GAGTACTTAATGAAATAGAA+TGG | + | chr5.4:55815141-55815160 | MS.gene89222:intron | 25.0% |
| ! | GAGTCTTTGATTAATTTCAA+AGG | + | chr5.4:55814529-55814548 | MS.gene89222:CDS | 25.0% |
| ! | TAGAATGGAAAATTGAGATA+AGG | + | chr5.4:55815156-55815175 | MS.gene89222:intron | 25.0% |
| ! | TGATATATTGCACATAATTG+TGG | + | chr5.4:55814968-55814987 | MS.gene89222:intron | 25.0% |
| ! | TTTATCAAATTAGTCCTTGA+AGG | - | chr5.4:55815726-55815745 | None:intergenic | 25.0% |
| !! | AAGGTTTGTTTGTGTTTATA+GGG | + | chr5.4:55815175-55815194 | MS.gene89222:intron | 25.0% |
| !! | CTCTTTTGCATTATTGAATA+TGG | - | chr5.4:55814743-55814762 | None:intergenic | 25.0% |
| !! | TAAGGTTTGTTTGTGTTTAT+AGG | + | chr5.4:55815174-55815193 | MS.gene89222:intron | 25.0% |
| !!! | ATTCTGATAATGAATTTTGC+AGG | + | chr5.4:55815604-55815623 | MS.gene89222:intron | 25.0% |
| AAGAAAGCAACATAACTTTG+AGG | - | chr5.4:55815484-55815503 | None:intergenic | 30.0% | |
| AATGCAAAAGAGAAGCAAAA+TGG | + | chr5.4:55814751-55814770 | MS.gene89222:CDS | 30.0% | |
| ACAATGTAGAATGTTGTTGT+TGG | - | chr5.4:55814314-55814333 | None:intergenic | 30.0% | |
| CAAGTACTTAGAGCAATAAA+TGG | - | chr5.4:55814936-55814955 | None:intergenic | 30.0% | |
| CTGCAAATTATTGTTCTCAT+TGG | - | chr5.4:55814629-55814648 | None:intergenic | 30.0% | |
| CTTTAGCACAAATACTCAAT+TGG | + | chr5.4:55815698-55815717 | MS.gene89222:intron | 30.0% | |
| TAGAGTAGGAGAATTTGTAA+TGG | - | chr5.4:55814458-55814477 | None:intergenic | 30.0% | |
| TATTACAACAATCTCATGCA+AGG | + | chr5.4:55814562-55814581 | MS.gene89222:CDS | 30.0% | |
| TCTATATTTGTTCATGGTGT+AGG | + | chr5.4:55815799-55815818 | MS.gene89222:intron | 30.0% | |
| ! | AGAACAATAATTTGCAGCAA+TGG | + | chr5.4:55814632-55814651 | MS.gene89222:CDS | 30.0% |
| ! | AGGTTTGTTTGTGTTTATAG+GGG | + | chr5.4:55815176-55815195 | MS.gene89222:intron | 30.0% |
| !! | AATAGCTTTGAAACTTCAAG+TGG | + | chr5.4:55814706-55814725 | MS.gene89222:CDS | 30.0% |
| !! | TATTTTTGACGAGACTACTA+TGG | + | chr5.4:55814333-55814352 | MS.gene89222:CDS | 30.0% |
| !!! | ATGAATTTTGCAGGTTGATT+TGG | + | chr5.4:55815613-55815632 | MS.gene89222:intron | 30.0% |
| AAATCTACCTTGGAACCATT+TGG | - | chr5.4:55815451-55815470 | None:intergenic | 35.0% | |
| ACCATCTTCTTCTTCAATCA+TGG | - | chr5.4:55814389-55814408 | None:intergenic | 35.0% | |
| ACTAATTGCTTTCTCCAACA+TGG | - | chr5.4:55815642-55815661 | None:intergenic | 35.0% | |
| ATACTCAATTGGAACCTTCA+AGG | + | chr5.4:55815709-55815728 | MS.gene89222:intron | 35.0% | |
| CAAAATGGTGAAAGTTCATG+TGG | + | chr5.4:55814766-55814785 | MS.gene89222:CDS | 35.0% | |
| CACATAATTGTGGTCAAATG+GGG | + | chr5.4:55814978-55814997 | MS.gene89222:intron | 35.0% | |
| GCACATAATTGTGGTCAAAT+GGG | + | chr5.4:55814977-55814996 | MS.gene89222:intron | 35.0% | |
| GTTTGTTTGTGTTTATAGGG+GGG | + | chr5.4:55815178-55815197 | MS.gene89222:intron | 35.0% | |
| TCCATGATTGAAGAAGAAGA+TGG | + | chr5.4:55814385-55814404 | MS.gene89222:CDS | 35.0% | |
| TGCACATAATTGTGGTCAAA+TGG | + | chr5.4:55814976-55814995 | MS.gene89222:intron | 35.0% | |
| ! | CACAAATTTGTGGTGCTTTT+AGG | - | chr5.4:55814670-55814689 | None:intergenic | 35.0% |
| ! | GGTTTGTTTGTGTTTATAGG+GGG | + | chr5.4:55815177-55815196 | MS.gene89222:intron | 35.0% |
| ! | TGTTTTACTTGACCAATGTC+AGG | - | chr5.4:55815869-55815888 | None:intergenic | 35.0% |
| AAGCACCACAAATTTGTGCA+TGG | + | chr5.4:55814672-55814691 | MS.gene89222:CDS | 40.0% | |
| ACAAATTTGTGCATGGTGCA+AGG | + | chr5.4:55814679-55814698 | MS.gene89222:CDS | 40.0% | |
| AGAAGATCGCTTCTTCAAGA+CGG | - | chr5.4:55814875-55814894 | None:intergenic | 40.0% | |
| ATGGTGAAAGTTCATGTGGA+TGG | + | chr5.4:55814770-55814789 | MS.gene89222:CDS | 40.0% | |
| CATTTGGCACAAGTTCTTGT+AGG | - | chr5.4:55815435-55815454 | None:intergenic | 40.0% | |
| CTACAAGAACTTGTGCCAAA+TGG | + | chr5.4:55815433-55815452 | MS.gene89222:CDS | 40.0% | |
| CTCCTACTCTATGCAGAAAA+GGG | + | chr5.4:55814467-55814486 | MS.gene89222:CDS | 40.0% | |
| CTTGAAGAAGCGATCTTCTA+TGG | + | chr5.4:55814876-55814895 | MS.gene89222:CDS | 40.0% | |
| GAAACTTCAAGTGGTAGCTA+TGG | + | chr5.4:55814715-55814734 | MS.gene89222:CDS | 40.0% | |
| GAAGAGAGAGAATAAGTGAG+AGG | + | chr5.4:55815401-55815420 | MS.gene89222:CDS | 40.0% | |
| GTTTCTTCAGTTGCAAGTGA+AGG | + | chr5.4:55815670-55815689 | MS.gene89222:CDS | 40.0% | |
| TCGTCATCACAAGGAACATT+TGG | - | chr5.4:55814808-55814827 | None:intergenic | 40.0% | |
| TCTCCTACTCTATGCAGAAA+AGG | + | chr5.4:55814466-55814485 | MS.gene89222:CDS | 40.0% | |
| TTGCACCATGCACAAATTTG+TGG | - | chr5.4:55814680-55814699 | None:intergenic | 40.0% | |
| TTTGTTCATGGTGTAGGTGT+TGG | + | chr5.4:55815805-55815824 | MS.gene89222:intron | 40.0% | |
| ! | ACACTTTGAGGATCTTTGGA+TGG | - | chr5.4:55815274-55815293 | None:intergenic | 40.0% |
| ! | AGCAACACTTTGAGGATCTT+TGG | - | chr5.4:55815278-55815297 | None:intergenic | 40.0% |
| ! | GATGGTTCACAAAGCACTAA+TGG | + | chr5.4:55814403-55814422 | MS.gene89222:CDS | 40.0% |
| ! | TGATGTTTCTGTCAAGATCG+CGG | + | chr5.4:55815054-55815073 | MS.gene89222:intron | 40.0% |
| ! | TGTTGGCAGCTGATGAATTT+TGG | + | chr5.4:55815822-55815841 | MS.gene89222:CDS | 40.0% |
| !! | GATGAATTTTGGCCTGTCAA+TGG | + | chr5.4:55815833-55815852 | MS.gene89222:CDS | 40.0% |
| !! | GGTTGATTTGGTTACCATGT+TGG | + | chr5.4:55815625-55815644 | MS.gene89222:intron | 40.0% |
| ACTTGTGCCAAATGGTTCCA+AGG | + | chr5.4:55815441-55815460 | MS.gene89222:CDS | 45.0% | |
| CTACAACACAACCGCAATTG+AGG | - | chr5.4:55815013-55815032 | None:intergenic | 45.0% | |
| GGCGAATACAACCTCAATTG+CGG | + | chr5.4:55814999-55815018 | MS.gene89222:intron | 45.0% | |
| TAGCTTTCAACAGAGCTGGA+TGG | + | chr5.4:55814600-55814619 | MS.gene89222:CDS | 45.0% | |
| TGTGCATGGCTTCTTTGCAT+TGG | - | chr5.4:55815218-55815237 | None:intergenic | 45.0% | |
| TTCTTACTTGCAGCTGTGCA+TGG | - | chr5.4:55815232-55815251 | None:intergenic | 45.0% | |
| TTGCGGTTGTGTTGTAGTCA+TGG | + | chr5.4:55815016-55815035 | MS.gene89222:intron | 45.0% | |
| ! | CTTGGGTTTGAAGCAAACCT+TGG | - | chr5.4:55815302-55815321 | None:intergenic | 45.0% |
| ! | TGCCCTTTTCTGCATAGAGT+AGG | - | chr5.4:55814472-55814491 | None:intergenic | 45.0% |
| ! | TGCTTAGCTTTCAACAGAGC+TGG | + | chr5.4:55814596-55814615 | MS.gene89222:CDS | 45.0% |
| !! | GAATTTTGGCCTGTCAATGG+TGG | + | chr5.4:55815836-55815855 | MS.gene89222:CDS | 45.0% |
| !!! | GATAAATTATTAATATTTTA+GGG | + | chr5.4:55815740-55815759 | MS.gene89222:intron | 5.0% |
| !!! | TGATAAATTATTAATATTTT+AGG | + | chr5.4:55815739-55815758 | MS.gene89222:intron | 5.0% |
| ACCTTGGCAGCAACACTTTG+AGG | - | chr5.4:55815286-55815305 | None:intergenic | 50.0% | |
| GGTGGAAAAGCTCCTGACAT+TGG | + | chr5.4:55815854-55815873 | MS.gene89222:CDS | 50.0% | |
| TCATCGTCGTCGTCATCACA+AGG | - | chr5.4:55814817-55814836 | None:intergenic | 50.0% | |
| ! | CATGGCTTCTTTGCATTGGC+AGG | - | chr5.4:55815214-55815233 | None:intergenic | 50.0% |
| ! | GGAGCTTTTCCACCATTGAC+AGG | - | chr5.4:55815848-55815867 | None:intergenic | 50.0% |
| !! | TCCTCAAAGTGTTGCTGCCA+AGG | + | chr5.4:55815282-55815301 | MS.gene89222:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 55814301 | 55815922 | 55814301 | ID=MS.gene89222 |
| chr5.4 | mRNA | 55814301 | 55815922 | 55814301 | ID=MS.gene89222.t1;Parent=MS.gene89222 |
| chr5.4 | exon | 55814301 | 55814897 | 55814301 | ID=MS.gene89222.t1.exon1;Parent=MS.gene89222.t1 |
| chr5.4 | CDS | 55814301 | 55814897 | 55814301 | ID=cds.MS.gene89222.t1;Parent=MS.gene89222.t1 |
| chr5.4 | exon | 55815196 | 55815303 | 55815196 | ID=MS.gene89222.t1.exon2;Parent=MS.gene89222.t1 |
| chr5.4 | CDS | 55815196 | 55815303 | 55815196 | ID=cds.MS.gene89222.t1;Parent=MS.gene89222.t1 |
| chr5.4 | exon | 55815397 | 55815462 | 55815397 | ID=MS.gene89222.t1.exon3;Parent=MS.gene89222.t1 |
| chr5.4 | CDS | 55815397 | 55815462 | 55815397 | ID=cds.MS.gene89222.t1;Parent=MS.gene89222.t1 |
| chr5.4 | exon | 55815626 | 55815691 | 55815626 | ID=MS.gene89222.t1.exon4;Parent=MS.gene89222.t1 |
| chr5.4 | CDS | 55815626 | 55815691 | 55815626 | ID=cds.MS.gene89222.t1;Parent=MS.gene89222.t1 |
| chr5.4 | exon | 55815821 | 55815922 | 55815821 | ID=MS.gene89222.t1.exon5;Parent=MS.gene89222.t1 |
| chr5.4 | CDS | 55815821 | 55815922 | 55815821 | ID=cds.MS.gene89222.t1;Parent=MS.gene89222.t1 |
| Gene Sequence |
| Protein sequence |
