AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89496

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89496.t1 MTR_1g058210 46.857 175 44 5 1 131 148 317 3.03e-36 130
MS.gene89496.t1 MTR_5g060780 43.678 174 50 4 3 131 144 314 1.13e-32 120
MS.gene89496.t1 MTR_5g061890 44.253 174 49 4 3 131 144 314 6.62e-32 118
MS.gene89496.t1 MTR_5g460920 43.678 174 50 4 3 131 144 314 1.07e-31 117
MS.gene89496.t1 MTR_5g062970 89.474 57 6 0 1 57 173 229 5.60e-31 112
MS.gene89496.t1 MTR_5g060630 43.182 176 55 4 1 131 174 349 2.69e-30 115
MS.gene89496.t1 MTR_5g460740 43.182 176 55 4 1 131 174 349 2.69e-30 115
MS.gene89496.t1 MTR_5g062960 66.279 86 20 3 74 150 29 114 1.86e-28 104
MS.gene89496.t1 MTR_5g061220 35.909 220 62 7 1 145 153 368 1.96e-27 107
MS.gene89496.t1 MTR_5g060770 46.667 135 58 5 3 131 92 218 6.02e-26 101
MS.gene89496.t1 MTR_2g024430 40.828 169 55 8 2 131 158 320 3.42e-24 98.2
MS.gene89496.t1 MTR_5g040880 36.310 168 63 7 2 131 149 310 1.15e-21 90.9
MS.gene89496.t1 MTR_5g040740 36.842 171 61 7 2 131 149 313 3.54e-19 83.6
MS.gene89496.t1 MTR_2g094570 53.226 62 29 0 2 63 200 261 6.28e-19 83.2
MS.gene89496.t1 MTR_2g094570 53.226 62 29 0 2 63 144 205 6.38e-19 83.2
MS.gene89496.t1 MTR_2g094570 53.226 62 29 0 2 63 144 205 6.57e-19 83.2
MS.gene89496.t1 MTR_3g073420 54.839 62 28 0 2 63 153 214 7.34e-19 82.8
MS.gene89496.t1 MTR_5g082140 34.536 194 73 10 1 145 149 337 2.18e-18 81.6
MS.gene89496.t1 MTR_4g058930 43.678 87 46 2 2 88 145 228 1.31e-17 79.3
MS.gene89496.t1 MTR_4g058930 43.678 87 46 2 2 88 145 228 1.55e-17 79.3
MS.gene89496.t1 MTR_7g101275 28.814 177 75 4 2 131 128 300 3.89e-17 77.8
MS.gene89496.t1 MTR_1g094960 48.387 62 32 0 2 63 154 215 2.18e-16 75.9
MS.gene89496.t1 MTR_4g088210 46.774 62 33 0 2 63 184 245 2.32e-16 75.9
MS.gene89496.t1 MTR_4g088210 46.774 62 33 0 2 63 184 245 2.47e-16 75.9
MS.gene89496.t1 MTR_2g014770 46.774 62 33 0 2 63 194 255 3.05e-16 75.5
MS.gene89496.t1 MTR_2g014770 46.774 62 33 0 2 63 194 255 3.30e-16 75.5
MS.gene89496.t1 MTR_2g006380 35.912 181 65 10 3 142 160 330 3.42e-16 75.1
MS.gene89496.t1 MTR_1g064430 36.170 94 57 2 2 94 165 256 5.35e-16 74.7
MS.gene89496.t1 MTR_1g064430 36.170 94 57 2 2 94 178 269 5.37e-16 74.7
MS.gene89496.t1 MTR_8g101360 41.935 62 36 0 2 63 171 232 4.77e-15 72.0
MS.gene89496.t1 MTR_8g027440 43.548 62 35 0 2 63 167 228 4.78e-15 72.0
MS.gene89496.t1 MTR_2g006270 34.946 186 65 10 3 142 153 328 8.79e-15 71.2
MS.gene89496.t1 MTR_4g060460 45.161 62 34 0 2 63 202 263 1.13e-14 70.9
MS.gene89496.t1 MTR_4g060460 45.161 62 34 0 2 63 202 263 1.20e-14 70.9
MS.gene89496.t1 MTR_7g101280 43.548 62 35 0 2 63 167 228 1.39e-14 70.9
MS.gene89496.t1 MTR_0041s0110 43.548 62 35 0 2 63 167 228 1.39e-14 70.9
MS.gene89496.t1 MTR_4g021580 41.935 62 36 0 2 63 157 218 2.53e-14 70.1
MS.gene89496.t1 MTR_4g021580 41.935 62 36 0 2 63 157 218 2.69e-14 69.7
MS.gene89496.t1 MTR_2g005240 43.548 62 35 0 2 63 161 222 4.75e-14 69.3
MS.gene89496.t1 MTR_2g093740 43.548 62 35 0 2 63 217 278 5.72e-14 68.9
MS.gene89496.t1 MTR_2g093740 43.548 62 35 0 2 63 217 278 6.05e-14 68.9
MS.gene89496.t1 MTR_2g093740 43.548 62 35 0 2 63 204 265 6.11e-14 68.9
MS.gene89496.t1 MTR_2g093740 43.548 62 35 0 2 63 87 148 6.25e-14 68.9
MS.gene89496.t1 MTR_2g093740 43.548 62 35 0 2 63 204 265 6.38e-14 68.9
MS.gene89496.t1 MTR_2g093740 43.548 62 35 0 2 63 217 278 6.40e-14 68.9
MS.gene89496.t1 MTR_2g093740 43.548 62 35 0 2 63 204 265 6.58e-14 68.9
MS.gene89496.t1 MTR_2g093740 43.548 62 35 0 2 63 74 135 6.86e-14 68.6
MS.gene89496.t1 MTR_2g093740 43.548 62 35 0 2 63 87 148 7.31e-14 68.6
MS.gene89496.t1 MTR_2g093740 43.548 62 35 0 2 63 74 135 7.35e-14 68.6
MS.gene89496.t1 MTR_8g100050 40.323 62 37 0 2 63 198 259 8.41e-14 68.6
MS.gene89496.t1 MTR_8g100050 40.323 62 37 0 2 63 198 259 8.92e-14 68.6
MS.gene89496.t1 MTR_2g018690 43.548 62 35 0 2 63 163 224 1.07e-13 68.2
MS.gene89496.t1 MTR_8g079492 43.548 62 35 0 2 63 162 223 1.19e-13 68.2
MS.gene89496.t1 MTR_8g079492 43.548 62 35 0 2 63 162 223 1.20e-13 68.2
MS.gene89496.t1 MTR_8g079492 43.548 62 35 0 2 63 80 141 1.21e-13 68.2
MS.gene89496.t1 MTR_1g024025 43.548 62 35 0 2 63 182 243 1.23e-13 68.2
MS.gene89496.t1 MTR_7g062540 37.879 66 41 0 2 67 152 217 2.51e-13 67.0
MS.gene89496.t1 MTR_4g124900 38.710 62 38 0 2 63 162 223 3.67e-13 66.6
MS.gene89496.t1 MTR_4g124900 38.710 62 38 0 2 63 162 223 3.90e-13 66.6
MS.gene89496.t1 MTR_2g043250 38.710 62 38 0 2 63 162 223 7.07e-13 65.9
MS.gene89496.t1 MTR_5g460910 55.932 59 23 2 73 131 158 213 7.81e-13 65.1
MS.gene89496.t1 MTR_5g076270 41.935 62 36 0 2 63 164 225 3.23e-12 63.9
MS.gene89496.t1 MTR_3g064050 41.935 62 36 0 2 63 166 227 3.50e-12 63.9
MS.gene89496.t1 MTR_0041s0120 48.077 52 27 0 2 53 128 179 4.73e-12 63.2
MS.gene89496.t1 MTR_8g446900 43.548 62 35 0 2 63 98 159 7.66e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89496.t1 AT1G77850 53.731 67 31 0 2 68 155 221 1.91e-19 84.7
MS.gene89496.t1 AT1G77850 53.731 67 31 0 2 68 155 221 2.01e-19 84.7
MS.gene89496.t1 AT2G28350 48.387 62 32 0 2 63 151 212 6.32e-17 77.4
MS.gene89496.t1 AT2G28350 48.387 62 32 0 2 63 151 212 7.01e-17 77.4
MS.gene89496.t1 AT4G30080 50.000 62 31 0 2 63 156 217 1.33e-16 76.6
MS.gene89496.t1 AT2G33860 48.387 62 32 0 2 63 195 256 1.63e-16 76.3
MS.gene89496.t1 AT2G33860 48.387 62 32 0 2 63 38 99 5.93e-16 74.7
MS.gene89496.t1 AT1G34390 44.444 63 35 0 1 63 159 221 1.03e-14 71.2
MS.gene89496.t1 AT4G23980 41.935 62 36 0 2 63 152 213 1.33e-14 70.9
MS.gene89496.t1 AT4G23980 41.935 62 36 0 2 63 152 213 1.36e-14 70.9
MS.gene89496.t1 AT5G60450 43.548 62 35 0 2 63 189 250 1.44e-14 70.9
MS.gene89496.t1 AT5G60450 43.548 62 35 0 2 63 213 274 1.52e-14 70.9
MS.gene89496.t1 AT1G35540 42.857 63 36 0 1 63 161 223 1.78e-14 70.5
MS.gene89496.t1 AT2G46530 41.935 62 36 0 2 63 181 242 2.30e-14 70.1
MS.gene89496.t1 AT2G46530 41.935 62 36 0 2 63 160 221 2.39e-14 70.1
MS.gene89496.t1 AT5G37020 43.548 62 35 0 2 63 162 223 2.49e-14 70.1
MS.gene89496.t1 AT5G37020 43.548 62 35 0 2 63 162 223 2.50e-14 70.1
MS.gene89496.t1 AT2G46530 41.935 62 36 0 2 63 73 134 3.08e-14 69.7
MS.gene89496.t1 AT5G37020 43.548 62 35 0 2 63 67 128 3.36e-14 69.7
MS.gene89496.t1 AT1G34310 42.857 63 36 0 1 63 161 223 5.67e-14 68.9
MS.gene89496.t1 AT1G19850 43.548 62 35 0 2 63 194 255 7.08e-14 68.9
MS.gene89496.t1 AT1G19850 43.548 62 35 0 2 63 183 244 7.27e-14 68.9
MS.gene89496.t1 AT3G61830 41.935 62 36 0 2 63 164 225 1.21e-13 68.2
MS.gene89496.t1 AT3G61830 41.935 62 36 0 2 63 113 174 1.42e-13 67.8
MS.gene89496.t1 AT5G20730 41.935 62 36 0 2 63 163 224 1.57e-13 67.8
MS.gene89496.t1 AT5G20730 41.935 62 36 0 2 63 163 224 1.61e-13 67.8
MS.gene89496.t1 AT5G20730 41.935 62 36 0 2 63 163 224 1.65e-13 67.8
MS.gene89496.t1 AT1G35520 42.857 63 36 0 1 63 161 223 1.68e-13 67.8
MS.gene89496.t1 AT1G19220 40.323 62 37 0 2 63 162 223 4.40e-13 66.6
MS.gene89496.t1 AT5G62000 38.710 62 38 0 2 63 200 261 5.87e-13 66.2
MS.gene89496.t1 AT5G62000 38.710 62 38 0 2 63 200 261 5.93e-13 66.2
MS.gene89496.t1 AT5G62000 38.710 62 38 0 2 63 200 261 5.93e-13 66.2
MS.gene89496.t1 AT5G62000 38.710 62 38 0 2 63 200 261 5.93e-13 66.2
MS.gene89496.t1 AT5G62000 38.710 62 38 0 2 63 200 261 5.93e-13 66.2
MS.gene89496.t1 AT1G35240 41.270 63 37 0 1 63 161 223 9.54e-13 65.5
MS.gene89496.t1 AT1G30330 41.935 62 36 0 2 63 163 224 1.03e-12 65.5
MS.gene89496.t1 AT1G30330 41.935 62 36 0 2 63 165 226 1.09e-12 65.5
MS.gene89496.t1 AT1G30330 41.935 62 36 0 2 63 165 226 1.09e-12 65.5
MS.gene89496.t1 AT1G59750 40.323 62 37 0 2 63 160 221 7.16e-12 62.8
MS.gene89496.t1 AT1G59750 40.323 62 37 0 2 63 160 221 7.44e-12 62.8
MS.gene89496.t1 AT1G59750 40.323 62 37 0 2 63 160 221 7.74e-12 62.8
MS.gene89496.t1 AT1G59750 40.323 62 37 0 2 63 160 221 7.74e-12 62.8
MS.gene89496.t1 AT1G34410 38.095 63 39 0 1 63 161 223 1.23e-11 62.4

Find 33 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTAATTGGCGCATGCTTC+AGG 0.281500 5.4:-49165368 MS.gene89496:intron
CTCCTTCTAATGTCCCTAAT+TGG 0.322348 5.4:-49165381 MS.gene89496:CDS
ACCTGAAGCATGCGCCAATT+AGG 0.352249 5.4:+49165367 None:intergenic
CCTGAAGCATGCGCCAATTA+GGG 0.377642 5.4:+49165368 None:intergenic
AGTGCAATTTAATAAGCGTT+TGG 0.399679 5.4:-49164753 MS.gene89496:CDS
CTGACATTCAAGGCCGAGTC+TGG 0.403843 5.4:-49165814 MS.gene89496:CDS
GGAAGATATTCGTTGGAACT+TGG 0.410564 5.4:-49165667 MS.gene89496:CDS
CTTTATGCGATGAGAAATAC+TGG 0.421919 5.4:+49164673 None:intergenic
ATGAAGATTAGTTGGACATC+TGG 0.423644 5.4:-49165499 MS.gene89496:CDS
CGCCAATTAGGGACATTAGA+AGG 0.425529 5.4:+49165379 None:intergenic
AGATGTCCAACTAATCTTCA+TGG 0.435291 5.4:+49165501 None:intergenic
CAGTATTTCTCATCGCATAA+AGG 0.451139 5.4:-49164672 None:intergenic
CTCTCCGTCACTGACATTCA+AGG 0.461163 5.4:-49165824 MS.gene89496:CDS
ATGATGCCATGAAGATTAGT+TGG 0.464606 5.4:-49165507 MS.gene89496:CDS
GAAGATTCTTCTTTCTTCAA+AGG 0.471685 5.4:+49165460 None:intergenic
CCTACTGAAAAGGTGTCTCT+TGG 0.480185 5.4:+49165763 None:intergenic
AAGTCCATCCCCTACTGAAA+AGG 0.489646 5.4:+49165753 None:intergenic
CGTTGGAACTTGGAATATGC+CGG 0.508373 5.4:-49165657 MS.gene89496:CDS
GATGAGATTGTATCAGCCTC+GGG 0.518035 5.4:-49165428 MS.gene89496:CDS
GAGAAATACTGGTCGATCGA+AGG 0.525335 5.4:+49164684 None:intergenic
CTTGGAATATGCCGGAAAAG+TGG 0.525958 5.4:-49165649 MS.gene89496:CDS
AGATGAGATTGTATCAGCCT+CGG 0.541379 5.4:-49165429 MS.gene89496:CDS
AACAACAAGAAACTCGTCAC+TGG 0.545833 5.4:-49165722 MS.gene89496:CDS
TTGGAATATGCCGGAAAAGT+GGG 0.561394 5.4:-49165648 MS.gene89496:CDS
TATGCGTGTACTGCCAGACT+CGG 0.574777 5.4:+49165801 None:intergenic
TCAGCTGGGAAGATATTCGT+TGG 0.583376 5.4:-49165674 MS.gene89496:CDS
GTGACGGAGAGTGTCTGAGA+TGG 0.649352 5.4:+49165836 None:intergenic
TCGGCCTTGAATGTCAGTGA+CGG 0.654538 5.4:+49165820 None:intergenic
ATGAGATTGTATCAGCCTCG+GGG 0.686243 5.4:-49165427 MS.gene89496:CDS
GGTGTCTCTTGGATTTACCG+CGG 0.703682 5.4:+49165774 None:intergenic
TGAGATTGTATCAGCCTCGG+GGG 0.706802 5.4:-49165426 MS.gene89496:CDS
AATATGCCGGAAAAGTGGGA+AGG 0.715565 5.4:-49165644 MS.gene89496:intron
CAGTACACGCATATTTACCG+CGG 0.765088 5.4:-49165791 MS.gene89496:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTGTTAAAGAAAAAAAGTT+TGG + chr5.4:49165735-49165754 None:intergenic 20.0%
!! TTGAAACTATAATTAGATGA+TGG - chr5.4:49165350-49165369 MS.gene89496:intron 20.0%
!!! AAACTTTTTTTCTTTAACAG+TGG - chr5.4:49165734-49165753 MS.gene89496:CDS 20.0%
!!! TAATTCTAAAATTAAGAGAC+AGG - chr5.4:49165441-49165460 MS.gene89496:CDS 20.0%
!!! TTTATTTTTGCTTTTCACAA+GGG + chr5.4:49165677-49165696 None:intergenic 20.0%
!!! TTTTATTTTTGCTTTTCACA+AGG + chr5.4:49165678-49165697 None:intergenic 20.0%
! ACATTTGAATCTTATCCTAT+AGG + chr5.4:49165422-49165441 None:intergenic 25.0%
! AGGGAAAGAGATTAAAAAAA+AGG + chr5.4:49165658-49165677 None:intergenic 25.0%
! CATTTGAATCTTATCCTATA+GGG + chr5.4:49165421-49165440 None:intergenic 25.0%
! GAAAGAGATTAAAAAAAAGG+TGG + chr5.4:49165655-49165674 None:intergenic 25.0%
! TGATGATCCTTATAAACTAA+TGG - chr5.4:49165556-49165575 MS.gene89496:intron 25.0%
!! TTACAGTTCAAGTTTATAGT+TGG - chr5.4:49165250-49165269 MS.gene89496:intron 25.0%
!!! AAATTGGTTTGATTTTGTAG+TGG - chr5.4:49164972-49164991 MS.gene89496:intron 25.0%
!!! TTTTAGTTAAAAACTCAGCT+GGG - chr5.4:49164826-49164845 MS.gene89496:intron 25.0%
AGTGCAATTTAATAAGCGTT+TGG - chr5.4:49165761-49165780 MS.gene89496:CDS 30.0%
CAGATACAACTTATTGGATT+TGG + chr5.4:49165514-49165533 None:intergenic 30.0%
GAAGATTCTTCTTTCTTCAA+AGG + chr5.4:49165057-49165076 None:intergenic 30.0%
TATCTGCAAACATGTTGAAT+GGG - chr5.4:49165528-49165547 MS.gene89496:intron 30.0%
TCAAAGAAATCATCGAATTG+TGG + chr5.4:49165289-49165308 None:intergenic 30.0%
TGTTTGCAGATACAACTTAT+TGG + chr5.4:49165520-49165539 None:intergenic 30.0%
! AAATCAAACCAATTTGCTCT+CGG + chr5.4:49164967-49164986 None:intergenic 30.0%
! CCTTATAAACTAATGGATCA+CGG - chr5.4:49165563-49165582 MS.gene89496:intron 30.0%
!! TTAGATGATGGATCATGAAA+TGG - chr5.4:49165362-49165381 MS.gene89496:intron 30.0%
!!! GTTTTAGTTAAAAACTCAGC+TGG - chr5.4:49164825-49164844 MS.gene89496:intron 30.0%
AAGAGACAGGAAATCAATCA+AGG - chr5.4:49165454-49165473 MS.gene89496:CDS 35.0%
AGAGACAGGAAATCAATCAA+GGG - chr5.4:49165455-49165474 MS.gene89496:CDS 35.0%
AGATGTCCAACTAATCTTCA+TGG + chr5.4:49165016-49165035 None:intergenic 35.0%
ATGATGCCATGAAGATTAGT+TGG - chr5.4:49165007-49165026 MS.gene89496:intron 35.0%
GTATCTGCAAACATGTTGAA+TGG - chr5.4:49165527-49165546 MS.gene89496:intron 35.0%
TAGTCTCTTGCTCTATTGAT+TGG + chr5.4:49165710-49165729 None:intergenic 35.0%
TGTATTATCCGAGAGCAAAT+TGG - chr5.4:49164956-49164975 MS.gene89496:intron 35.0%
! ATGAAGATTAGTTGGACATC+TGG - chr5.4:49165015-49165034 MS.gene89496:intron 35.0%
! CCGTGATCCATTAGTTTATA+AGG + chr5.4:49165566-49165585 None:intergenic 35.0%
AACAACAAGAAACTCGTCAC+TGG - chr5.4:49164792-49164811 MS.gene89496:intron 40.0%
AGATGAGATTGTATCAGCCT+CGG - chr5.4:49165085-49165104 MS.gene89496:intron 40.0%
CTCCTTCTAATGTCCCTAAT+TGG - chr5.4:49165133-49165152 MS.gene89496:intron 40.0%
GATCACGGAACATAATTCAG+TGG - chr5.4:49165578-49165597 MS.gene89496:intron 40.0%
GGAAGATATTCGTTGGAACT+TGG - chr5.4:49164847-49164866 MS.gene89496:intron 40.0%
GTACATACGCTTTCTTCTGT+TGG - chr5.4:49165168-49165187 MS.gene89496:intron 40.0%
TTGAGAGATTAAGTCCAGTC+AGG + chr5.4:49165619-49165638 None:intergenic 40.0%
TTGGAATATGCCGGAAAAGT+GGG - chr5.4:49164866-49164885 MS.gene89496:intron 40.0%
! AAGAGACACCTTTTCAGTAG+GGG - chr5.4:49164753-49164772 MS.gene89496:CDS 40.0%
! AGTTGATGCGTGATTGACTT+AGG - chr5.4:49165325-49165344 MS.gene89496:intron 40.0%
! CAAGAGACACCTTTTCAGTA+GGG - chr5.4:49164752-49164771 MS.gene89496:CDS 40.0%
!! TGTATAGCTTTGTGCCCTAT+AGG - chr5.4:49165404-49165423 MS.gene89496:CDS 40.0%
AAGTCCATCCCCTACTGAAA+AGG + chr5.4:49164764-49164783 None:intergenic 45.0%
AAGTGGGAAGGTAACAGAGA+AGG - chr5.4:49164882-49164901 MS.gene89496:intron 45.0%
AATATGCCGGAAAAGTGGGA+AGG - chr5.4:49164870-49164889 MS.gene89496:intron 45.0%
ATGAGATTGTATCAGCCTCG+GGG - chr5.4:49165087-49165106 MS.gene89496:intron 45.0%
CAGTACACGCATATTTACCG+CGG - chr5.4:49164723-49164742 MS.gene89496:CDS 45.0%
CGCCAATTAGGGACATTAGA+AGG + chr5.4:49165138-49165157 None:intergenic 45.0%
CGTTGGAACTTGGAATATGC+CGG - chr5.4:49164857-49164876 MS.gene89496:intron 45.0%
CTTGGAATATGCCGGAAAAG+TGG - chr5.4:49164865-49164884 MS.gene89496:intron 45.0%
GAGAAATACTGGTCGATCGA+AGG + chr5.4:49165833-49165852 None:intergenic 45.0%
GATGAGATTGTATCAGCCTC+GGG - chr5.4:49165086-49165105 MS.gene89496:intron 45.0%
GGAATTGGCGGTGAAAAACA+TGG - chr5.4:49164921-49164940 MS.gene89496:intron 45.0%
GTCGATCACTTTCACAATCG+AGG + chr5.4:49165492-49165511 None:intergenic 45.0%
TCAGCTGGGAAGATATTCGT+TGG - chr5.4:49164840-49164859 MS.gene89496:intron 45.0%
! CCAAGAGACACCTTTTCAGT+AGG - chr5.4:49164751-49164770 MS.gene89496:CDS 45.0%
!! CCTACTGAAAAGGTGTCTCT+TGG + chr5.4:49164754-49164773 None:intergenic 45.0%
!! CTGTTACCTTCCCACTTTTC+CGG + chr5.4:49164879-49164898 None:intergenic 45.0%
ACCTGAAGCATGCGCCAATT+AGG + chr5.4:49165150-49165169 None:intergenic 50.0%
ACTGTTGTCAGTGACCTGAC+TGG - chr5.4:49165602-49165621 MS.gene89496:intron 50.0%
AGAGAAGGCGGTTATGGATG+CGG - chr5.4:49164897-49164916 MS.gene89496:intron 50.0%
CCTGAAGCATGCGCCAATTA+GGG + chr5.4:49165149-49165168 None:intergenic 50.0%
CTCTCCGTCACTGACATTCA+AGG - chr5.4:49164690-49164709 MS.gene89496:CDS 50.0%
GGTAACAGAGAAGGCGGTTA+TGG - chr5.4:49164891-49164910 MS.gene89496:intron 50.0%
GGTGTCTCTTGGATTTACCG+CGG + chr5.4:49164743-49164762 None:intergenic 50.0%
GGTTATGGATGCGGTGGAAT+TGG - chr5.4:49164906-49164925 MS.gene89496:intron 50.0%
TATGCGTGTACTGCCAGACT+CGG + chr5.4:49164716-49164735 None:intergenic 50.0%
TATGGATGCGGTGGAATTGG+CGG - chr5.4:49164909-49164928 MS.gene89496:intron 50.0%
TCGGCCTTGAATGTCAGTGA+CGG + chr5.4:49164697-49164716 None:intergenic 50.0%
TGAGATTGTATCAGCCTCGG+GGG - chr5.4:49165088-49165107 MS.gene89496:intron 50.0%
TGGGAAGGTAACAGAGAAGG+CGG - chr5.4:49164885-49164904 MS.gene89496:intron 50.0%
! GACACCTTTTCAGTAGGGGA+TGG - chr5.4:49164757-49164776 MS.gene89496:CDS 50.0%
CCCTAATTGGCGCATGCTTC+AGG - chr5.4:49165146-49165165 MS.gene89496:intron 55.0%
CTGACATTCAAGGCCGAGTC+TGG - chr5.4:49164700-49164719 MS.gene89496:CDS 55.0%
! ACATCTGAGATTGTCCCCCG+AGG + chr5.4:49165105-49165124 None:intergenic 55.0%
!! GTGACGGAGAGTGTCTGAGA+TGG + chr5.4:49164681-49164700 None:intergenic 55.0%
GAAGGCGGTTATGGATGCGG+TGG - chr5.4:49164900-49164919 MS.gene89496:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 49164675 49165861 49164675 ID=MS.gene89496
chr5.4 mRNA 49164675 49165861 49164675 ID=MS.gene89496.t1;Parent=MS.gene89496
chr5.4 exon 49165645 49165861 49165645 ID=MS.gene89496.t1.exon1;Parent=MS.gene89496.t1
chr5.4 CDS 49165645 49165861 49165645 ID=cds.MS.gene89496.t1;Parent=MS.gene89496.t1
chr5.4 exon 49165369 49165544 49165369 ID=MS.gene89496.t1.exon2;Parent=MS.gene89496.t1
chr5.4 CDS 49165369 49165544 49165369 ID=cds.MS.gene89496.t1;Parent=MS.gene89496.t1
chr5.4 exon 49164675 49164782 49164675 ID=MS.gene89496.t1.exon3;Parent=MS.gene89496.t1
chr5.4 CDS 49164675 49164782 49164675 ID=cds.MS.gene89496.t1;Parent=MS.gene89496.t1
Gene Sequence

>MS.gene89496

ATGCCATCTCAGACACTCTCCGTCACTGACATTCAAGGCCGAGTCTGGCAGTACACGCATATTTACCGCGGTAAATCCAAGAGACACCTTTTCAGTAGGGGATGGACTTCATTTGTCAACAACAAGAAACTCGTCACTGGTGATTCAGTTGTTTTAGTTAAAAACTCAGCTGGGAAGATATTCGTTGGAACTTGGAATATGCCGGAAAAGTGGGAAGGTAACAGAGAAGGCGGTTATGGATGCGGTGGAATTGGCGGTGAAAAACATGGCATTTGAAGTTTTGTATTATCCGAGAGCAAATTGGTTTGATTTTGTAGTGGATGCAAATGTTGATGATGCCATGAAGATTAGTTGGACATCTGGAATTCAAGTCAAGCTTCCTTTGAAGAAAGAAGAATCTTCAAATTCAAAGATGAGATTGTATCAGCCTCGGGGGACAATCTCAGATGTTTATAATGCTCCTTCTAATGTCCCTAATTGGCGCATGCTTCAGGTACATACGCTTTCTTCTGTTGGTCTTATTATATTTCAAGTGCATAACGTTATCTAGTACTACTTTTGTTTGATAATAAATATTACAGTTCAAGTTTATAGTTGGTACAAAGTTGAATCCACAATTCGATGATTTCTTTGATAAATATTAGTGTTGAAGTTGATGCGTGATTGACTTAGGTGTTGAAACTATAATTAGATGATGGATCATGAAATGGAATACTAAAATTGTTGTGATGTATAGCTTTGTGCCCTATAGGATAAGATTCAAATGTAATTCTAAAATTAAGAGACAGGAAATCAATCAAGGGAACGATACAAGCCTCGATTGTGAAAGTGATCGACCAAATCCAATAAGTTGTATCTGCAAACATGTTGAATGGGTTAACTGATGATCCTTATAAACTAATGGATCACGGAACATAATTCAGTGGTACTGTTGTCAGTGACCTGACTGGACTTAATCTCTCAAAACAAGACTTAAACCACCTTTTTTTTAATCTCTTTCCCTTGTGAAAAGCAAAAATAAAATGAAAATGACCAATCAATAGAGCAAGAGACTATACCAAACTTTTTTTCTTTAACAGTGGTGTGAGTGCAATTTAATAAGCGTTTGGAGAATCGCACTAGCTGTCACAAAACATAATGCTCTGATATTAAAAGCCTTCGATCGACCAGTATTTCTCATCGCATAA
Protein sequence

>MS.gene89496.t1

MPSQTLSVTDIQGRVWQYTHIYRGKSKRHLFSRGWTSFVNNKKLVTGDSVVLVKNSAGKIFVGTWNMPEKWEVDANVDDAMKISWTSGIQVKLPLKKEESSNSKMRLYQPRGTISDVYNAPSNVPNWRMLQWCECNLISVWRIALAVTKHNALILKAFDRPVFLIA