AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89556

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89556.t1 MTR_4g094632 63.871 155 53 1 1 155 1 152 8.43e-63 190
MS.gene89556.t1 MTR_4g094638 65.190 158 52 1 1 155 1 158 7.49e-56 173
MS.gene89556.t1 MTR_8g079502 39.759 166 87 3 1 155 1 164 4.54e-30 107
MS.gene89556.t1 MTR_1g047550 37.349 166 91 4 1 155 1 164 1.42e-27 101
MS.gene89556.t1 MTR_8g046350 36.025 161 94 3 1 155 1 158 6.62e-27 99.4
MS.gene89556.t1 MTR_1g054265 38.690 168 86 5 1 155 1 164 5.05e-26 97.1
MS.gene89556.t1 MTR_1g063160 38.323 167 88 5 1 155 1 164 1.36e-25 96.3
MS.gene89556.t1 MTR_8g051580 35.976 164 96 2 1 155 1 164 1.49e-24 93.6
MS.gene89556.t1 MTR_3g080940 36.774 155 84 4 1 141 8 162 1.76e-24 94.4
MS.gene89556.t1 MTR_4g131030 34.783 184 88 5 1 155 1 181 9.53e-24 92.4
MS.gene89556.t1 MTR_1g108580 35.762 151 83 2 2 138 9 159 4.41e-22 88.6
MS.gene89556.t1 MTR_3g030770 35.099 151 84 3 2 138 9 159 3.02e-20 83.6
MS.gene89556.t1 MTR_1g106070 33.533 167 97 4 2 154 9 175 3.73e-20 82.4
MS.gene89556.t1 MTR_2g093190 34.437 151 85 2 2 138 9 159 1.14e-19 82.0
MS.gene89556.t1 MTR_1g108510 35.099 151 84 3 2 138 9 159 1.83e-19 81.6
MS.gene89556.t1 MTR_7g028448 33.594 128 83 2 17 142 27 154 6.23e-19 79.0
MS.gene89556.t1 MTR_4g036915 33.594 128 83 2 17 142 27 154 6.23e-19 79.0
MS.gene89556.t1 MTR_7g075870 34.783 138 81 3 1 135 1 132 8.64e-19 79.3
MS.gene89556.t1 MTR_2g009890 45.238 84 44 1 1 84 1 82 1.60e-18 80.1
MS.gene89556.t1 MTR_3g052920 31.737 167 100 3 2 154 9 175 1.80e-18 79.0
MS.gene89556.t1 MTR_5g066180 34.307 137 81 3 1 135 1 130 1.97e-18 79.0
MS.gene89556.t1 MTR_5g045560 32.051 156 84 3 1 138 8 159 2.03e-18 79.0
MS.gene89556.t1 MTR_8g043650 31.138 167 101 3 2 154 9 175 3.35e-18 78.6
MS.gene89556.t1 MTR_8g033220 34.247 146 88 2 1 143 1 141 6.52e-18 77.4
MS.gene89556.t1 MTR_3g052870 31.847 157 94 3 2 154 9 156 8.68e-18 77.0
MS.gene89556.t1 MTR_8g033220 34.247 146 88 2 1 143 1 141 8.70e-18 77.4
MS.gene89556.t1 MTR_2g105290 31.928 166 101 4 1 155 11 175 1.06e-17 75.9
MS.gene89556.t1 MTR_7g075870 34.532 139 81 4 1 135 1 133 1.61e-17 76.3
MS.gene89556.t1 MTR_3g452380 31.852 135 89 1 1 135 16 147 3.51e-17 75.9
MS.gene89556.t1 MTR_1g105920 33.803 142 85 3 2 134 9 150 4.23e-17 75.5
MS.gene89556.t1 MTR_3g005530 35.938 128 62 3 1 108 1 128 5.04e-17 75.1
MS.gene89556.t1 MTR_1g075600 42.308 78 45 0 2 79 9 86 9.22e-17 74.7
MS.gene89556.t1 MTR_1g012570 29.341 167 104 3 2 154 9 175 1.11e-16 74.3
MS.gene89556.t1 MTR_3g088615 42.529 87 45 2 1 82 1 87 1.12e-16 73.2
MS.gene89556.t1 MTR_1g105910 31.737 167 100 4 2 154 9 175 1.27e-16 74.3
MS.gene89556.t1 MTR_5g053390 36.207 116 65 1 2 117 9 115 1.72e-16 73.9
MS.gene89556.t1 MTR_4g109830 32.414 145 87 3 1 144 1 135 3.90e-16 72.8
MS.gene89556.t1 MTR_7g016630 32.117 137 83 4 1 136 1 128 4.23e-16 73.2
MS.gene89556.t1 MTR_5g031000 33.898 118 61 2 1 101 1 118 6.40e-16 72.4
MS.gene89556.t1 MTR_5g031000 33.898 118 61 2 1 101 1 118 6.77e-16 72.0
MS.gene89556.t1 MTR_3g030780 35.238 105 66 1 2 104 9 113 7.28e-16 70.1
MS.gene89556.t1 MTR_5g032520 31.655 139 84 2 1 135 1 132 8.58e-16 72.0
MS.gene89556.t1 MTR_5g032150 31.655 139 84 2 1 135 1 132 1.12e-15 71.6
MS.gene89556.t1 MTR_2g030740 42.391 92 44 2 2 93 9 91 1.65e-15 71.2
MS.gene89556.t1 MTR_3g113030 52.459 61 29 0 1 61 1 61 1.77e-15 71.2
MS.gene89556.t1 MTR_8g086290 43.056 72 41 0 2 73 12 83 1.95e-15 70.1
MS.gene89556.t1 MTR_4g093970 34.821 112 67 1 1 106 27 138 2.19e-15 70.9
MS.gene89556.t1 MTR_1g077360 43.056 72 41 0 2 73 9 80 2.24e-15 70.9
MS.gene89556.t1 MTR_5g066960 51.667 60 29 0 1 60 1 60 2.33e-15 66.6
MS.gene89556.t1 MTR_1g053070 46.377 69 37 0 1 69 1 69 2.55e-15 70.9
MS.gene89556.t1 MTR_0003s0590 44.872 78 43 0 1 78 1 78 2.69e-15 70.9
MS.gene89556.t1 MTR_4g102530 34.615 156 85 5 1 149 1 146 3.39e-15 69.7
MS.gene89556.t1 MTR_8g033270 45.070 71 39 0 1 71 1 71 4.19e-15 70.5
MS.gene89556.t1 MTR_5g046870 43.421 76 42 1 1 75 1 76 4.72e-15 67.4
MS.gene89556.t1 MTR_6g015975 43.421 76 42 1 1 75 1 76 4.92e-15 70.1
MS.gene89556.t1 MTR_2g085280 46.377 69 37 0 2 70 9 77 6.43e-15 69.7
MS.gene89556.t1 MTR_5g021270 43.662 71 38 1 1 69 1 71 6.44e-15 69.7
MS.gene89556.t1 MTR_5g021270 43.662 71 38 1 1 69 1 71 6.53e-15 69.7
MS.gene89556.t1 MTR_2g085250 46.377 69 37 0 2 70 9 77 6.70e-15 69.7
MS.gene89556.t1 MTR_0121s0100 34.234 111 71 1 2 110 9 119 6.99e-15 67.4
MS.gene89556.t1 MTR_6g464720 31.098 164 87 4 1 142 1 160 1.76e-14 68.6
MS.gene89556.t1 MTR_4g127140 31.250 176 99 4 1 155 11 185 2.14e-14 67.4
MS.gene89556.t1 MTR_0121s0080 34.821 112 71 1 2 111 9 120 2.35e-14 68.2
MS.gene89556.t1 MTR_1g038300 41.333 75 42 1 1 73 1 75 2.68e-14 67.8
MS.gene89556.t1 MTR_3g102570 42.683 82 46 1 1 81 1 82 2.86e-14 68.9
MS.gene89556.t1 MTR_5g055100 35.652 115 68 2 2 114 9 119 2.86e-14 67.8
MS.gene89556.t1 MTR_1g101970 42.029 69 40 0 1 69 1 69 3.35e-14 67.0
MS.gene89556.t1 MTR_1g029670 42.254 71 39 1 1 69 1 71 3.80e-14 66.6
MS.gene89556.t1 MTR_7g016600 42.105 76 43 1 1 75 1 76 4.31e-14 67.8
MS.gene89556.t1 MTR_5g046790 42.647 68 39 0 1 68 1 68 6.64e-14 66.6
MS.gene89556.t1 MTR_4g093030 37.624 101 45 3 1 85 1 99 7.53e-14 65.5
MS.gene89556.t1 MTR_8g066260 36.842 95 53 3 1 90 1 93 1.58e-13 65.9
MS.gene89556.t1 MTR_8g087860 43.478 69 39 0 1 69 17 85 1.99e-13 65.9
MS.gene89556.t1 MTR_3g109930 30.464 151 75 3 15 144 15 156 2.41e-13 64.3
MS.gene89556.t1 MTR_4g036050 40.789 76 44 1 1 75 1 76 2.98e-13 64.3
MS.gene89556.t1 MTR_4g036050 40.789 76 44 1 1 75 1 76 3.05e-13 64.7
MS.gene89556.t1 MTR_4g036050 40.789 76 44 1 1 75 1 76 3.18e-13 63.9
MS.gene89556.t1 MTR_2g461710 44.068 59 33 0 1 59 1 59 3.24e-13 61.2
MS.gene89556.t1 MTR_4g036050 40.789 76 44 1 1 75 1 76 3.49e-13 64.3
MS.gene89556.t1 MTR_6g081890 49.425 87 30 2 60 143 74 149 3.99e-13 63.5
MS.gene89556.t1 MTR_8g097090 42.857 70 39 1 1 69 1 70 4.53e-13 64.7
MS.gene89556.t1 MTR_3g084980 42.857 70 39 1 1 69 1 70 8.02e-13 64.3
MS.gene89556.t1 MTR_7g075850 47.541 61 32 0 1 61 1 61 1.07e-12 63.9
MS.gene89556.t1 MTR_2g017865 42.029 69 40 0 1 69 16 84 1.42e-12 63.5
MS.gene89556.t1 MTR_4g109810 37.662 77 47 1 1 76 1 77 2.38e-12 62.8
MS.gene89556.t1 MTR_1g105905 27.215 158 101 3 11 154 1 158 4.65e-12 61.6
MS.gene89556.t1 MTR_1g041615 57.447 47 20 0 13 59 17 63 6.32e-12 59.7
MS.gene89556.t1 MTR_5g041650 40.000 85 49 2 1 83 38 122 8.77e-12 62.0
MS.gene89556.t1 MTR_4g108720 50.000 54 27 0 1 54 1 54 2.11e-11 60.8
MS.gene89556.t1 MTR_4g084740 51.923 52 25 0 1 52 1 52 2.29e-11 60.8
MS.gene89556.t1 MTR_8g022970 30.769 156 93 3 3 144 19 173 5.52e-11 58.2
MS.gene89556.t1 MTR_3g067875 46.429 56 30 0 11 66 1 56 5.71e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89556.t1 AT2G34440 35.260 173 91 4 1 153 1 172 1.32e-26 99.0
MS.gene89556.t1 AT2G24840 34.615 156 87 5 1 141 62 217 1.85e-22 90.1
MS.gene89556.t1 AT3G57230 35.556 135 83 3 1 135 1 131 4.58e-21 84.0
MS.gene89556.t1 AT3G66656 47.674 86 45 0 1 86 1 86 9.72e-21 84.0
MS.gene89556.t1 AT2G45660 34.074 135 86 1 1 135 1 132 1.15e-20 83.2
MS.gene89556.t1 AT3G57230 35.556 135 83 3 1 135 1 131 2.98e-20 84.0
MS.gene89556.t1 AT3G57230 35.556 135 83 3 1 135 1 131 2.98e-20 84.0
MS.gene89556.t1 AT2G45660 34.074 135 86 1 1 135 1 132 4.30e-20 83.2
MS.gene89556.t1 AT1G28460 35.507 138 72 3 2 138 8 129 4.11e-19 79.7
MS.gene89556.t1 AT1G29962 46.377 69 37 0 2 70 8 76 9.92e-19 79.0
MS.gene89556.t1 AT1G47760 34.965 143 77 4 1 139 1 131 1.25e-18 78.6
MS.gene89556.t1 AT4G22950 34.868 152 89 4 1 149 1 145 4.22e-18 77.0
MS.gene89556.t1 AT4G09960 35.156 128 63 3 1 108 2 129 9.97e-18 77.0
MS.gene89556.t1 AT4G09960 35.156 128 63 3 1 108 1 128 1.02e-17 77.0
MS.gene89556.t1 AT4G22950 34.868 152 89 4 1 149 1 145 1.04e-17 77.0
MS.gene89556.t1 AT4G22950 34.868 152 89 4 1 149 1 145 1.04e-17 77.0
MS.gene89556.t1 AT4G09960 35.156 128 63 3 1 108 1 128 1.12e-17 76.6
MS.gene89556.t1 AT4G09960 35.156 128 63 3 1 108 11 138 1.57e-17 76.6
MS.gene89556.t1 AT4G24540 34.043 141 78 3 1 135 1 132 1.78e-17 76.3
MS.gene89556.t1 AT4G09960 35.156 128 63 3 1 108 27 154 2.51e-17 76.6
MS.gene89556.t1 AT4G09960 35.156 128 63 3 1 108 96 223 2.65e-17 77.4
MS.gene89556.t1 AT4G37940 47.826 69 36 0 1 69 1 69 3.43e-17 75.5
MS.gene89556.t1 AT4G37940 47.826 69 36 0 1 69 1 69 4.59e-17 75.1
MS.gene89556.t1 AT4G37940 47.826 69 36 0 1 69 1 69 9.65e-17 73.6
MS.gene89556.t1 AT3G57390 40.816 98 53 1 1 93 1 98 1.81e-16 73.6
MS.gene89556.t1 AT5G10140 44.286 70 38 1 1 69 1 70 1.85e-16 72.4
MS.gene89556.t1 AT3G54340 33.577 137 81 3 1 135 1 129 2.31e-16 73.6
MS.gene89556.t1 AT5G10140 44.286 70 38 1 1 69 1 70 2.85e-16 72.4
MS.gene89556.t1 AT3G57390 40.816 98 53 1 1 93 1 98 2.93e-16 73.6
MS.gene89556.t1 AT5G10140 44.286 70 38 1 1 69 1 70 3.09e-16 72.4
MS.gene89556.t1 AT2G22540 47.826 69 36 0 1 69 1 69 3.40e-16 73.2
MS.gene89556.t1 AT2G22540 47.826 69 36 0 1 69 1 69 3.40e-16 73.2
MS.gene89556.t1 AT1G28450 35.252 139 76 4 2 139 8 133 3.84e-16 72.0
MS.gene89556.t1 AT5G51870 46.377 69 37 0 1 69 1 69 4.08e-16 71.6
MS.gene89556.t1 AT5G10140 44.286 70 38 1 1 69 1 70 4.11e-16 72.0
MS.gene89556.t1 AT5G51870 46.377 69 37 0 1 69 1 69 4.17e-16 72.4
MS.gene89556.t1 AT2G45650 33.333 144 89 1 1 144 1 137 6.56e-16 72.8
MS.gene89556.t1 AT5G51870 46.377 69 37 0 1 69 24 92 6.90e-16 71.6
MS.gene89556.t1 AT5G51870 46.377 69 37 0 1 69 1 69 7.47e-16 72.0
MS.gene89556.t1 AT5G51870 46.377 69 37 0 1 69 11 79 1.03e-15 71.6
MS.gene89556.t1 AT1G71692 39.450 109 54 4 1 97 1 109 1.17e-15 71.2
MS.gene89556.t1 AT5G62165 42.466 73 42 0 1 73 1 73 1.89e-15 69.7
MS.gene89556.t1 AT5G62165 42.466 73 42 0 1 73 1 73 1.89e-15 69.7
MS.gene89556.t1 AT5G62165 42.466 73 42 0 1 73 1 73 1.89e-15 69.7
MS.gene89556.t1 AT2G14210 45.833 72 38 1 1 71 1 72 2.03e-15 70.9
MS.gene89556.t1 AT5G13790 46.377 69 37 0 1 69 1 69 2.10e-15 71.6
MS.gene89556.t1 AT5G13790 46.377 69 37 0 1 69 1 69 2.17e-15 71.6
MS.gene89556.t1 AT5G62165 42.466 73 42 0 1 73 1 73 2.36e-15 69.3
MS.gene89556.t1 AT5G62165 42.466 73 42 0 1 73 1 73 2.36e-15 69.3
MS.gene89556.t1 AT5G62165 42.466 73 42 0 1 73 1 73 2.36e-15 69.3
MS.gene89556.t1 AT5G62165 42.466 73 42 0 1 73 1 73 2.36e-15 69.3
MS.gene89556.t1 AT5G62165 42.466 73 42 0 1 73 1 73 2.36e-15 69.3
MS.gene89556.t1 AT2G14210 45.833 72 38 1 1 71 1 72 2.67e-15 70.9
MS.gene89556.t1 AT5G20240 45.070 71 37 1 1 69 1 71 2.68e-15 68.9
MS.gene89556.t1 AT5G65070 33.577 137 75 5 1 136 1 122 3.11e-15 68.9
MS.gene89556.t1 AT1G69120 38.043 92 54 2 1 91 1 90 3.14e-15 70.5
MS.gene89556.t1 AT5G60440 32.203 177 89 4 2 154 7 176 3.56e-15 71.2
MS.gene89556.t1 AT1G65360 34.259 108 71 0 1 108 6 113 4.33e-15 70.1
MS.gene89556.t1 AT5G51860 31.159 138 87 2 1 135 1 133 4.77e-15 69.7
MS.gene89556.t1 AT5G20240 45.070 71 37 1 1 69 1 71 4.79e-15 69.7
MS.gene89556.t1 AT5G65070 42.424 66 38 0 1 66 1 66 4.81e-15 69.3
MS.gene89556.t1 AT5G51860 32.593 135 89 2 1 135 1 133 5.13e-15 69.3
MS.gene89556.t1 AT1G69120 38.043 92 54 2 1 91 1 90 5.48e-15 70.1
MS.gene89556.t1 AT5G62165 39.744 78 47 0 1 78 1 78 6.19e-15 67.0
MS.gene89556.t1 AT5G62165 39.744 78 47 0 1 78 1 78 6.90e-15 68.9
MS.gene89556.t1 AT5G62165 39.744 78 47 0 1 78 1 78 6.90e-15 68.9
MS.gene89556.t1 AT5G62165 39.744 78 47 0 1 78 1 78 7.27e-15 69.3
MS.gene89556.t1 AT5G62165 39.744 78 47 0 1 78 1 78 7.27e-15 69.3
MS.gene89556.t1 AT5G62165 39.744 78 47 0 1 78 1 78 7.27e-15 69.3
MS.gene89556.t1 AT5G23260 47.945 73 36 1 1 71 17 89 9.01e-15 69.7
MS.gene89556.t1 AT1G26310 31.061 132 86 3 1 131 1 128 9.13e-15 69.7
MS.gene89556.t1 AT5G23260 47.945 73 36 1 1 71 17 89 9.80e-15 69.7
MS.gene89556.t1 AT5G23260 47.945 73 36 1 1 71 1 73 1.02e-14 69.3
MS.gene89556.t1 AT5G23260 47.945 73 36 1 1 71 1 73 1.09e-14 69.3
MS.gene89556.t1 AT5G65050 41.429 70 40 1 1 69 1 70 1.23e-14 67.8
MS.gene89556.t1 AT4G11880 30.667 150 99 2 1 149 1 146 1.27e-14 67.8
MS.gene89556.t1 AT4G11880 30.667 150 99 2 1 149 1 146 1.27e-14 67.8
MS.gene89556.t1 AT1G01530 27.950 161 103 1 1 148 6 166 1.35e-14 68.9
MS.gene89556.t1 AT5G65070 42.424 66 38 0 1 66 1 66 1.67e-14 68.6
MS.gene89556.t1 AT2G03710 44.000 75 40 2 1 73 1 75 1.89e-14 67.8
MS.gene89556.t1 AT4G11880 30.667 150 99 2 1 149 1 146 2.23e-14 68.2
MS.gene89556.t1 AT4G11880 30.667 150 99 2 1 149 1 146 2.23e-14 68.2
MS.gene89556.t1 AT5G65070 45.763 59 32 0 1 59 1 59 2.45e-14 67.8
MS.gene89556.t1 AT3G30260 41.667 72 41 1 1 71 1 72 2.77e-14 68.2
MS.gene89556.t1 AT3G61120 43.662 71 40 0 1 71 1 71 2.95e-14 68.2
MS.gene89556.t1 AT5G60910 30.345 145 90 3 1 144 1 135 3.61e-14 67.8
MS.gene89556.t1 AT5G65070 45.763 59 32 0 1 59 1 59 3.64e-14 67.8
MS.gene89556.t1 AT5G65050 41.429 70 40 1 1 69 1 70 4.39e-14 66.6
MS.gene89556.t1 AT5G65050 41.429 70 40 1 1 69 1 70 4.57e-14 66.6
MS.gene89556.t1 AT5G65050 41.429 70 40 1 1 69 1 70 5.14e-14 66.2
MS.gene89556.t1 AT5G65060 40.000 70 41 1 1 69 1 70 5.63e-14 66.6
MS.gene89556.t1 AT1G72350 47.143 70 35 1 2 71 43 110 8.35e-14 66.6
MS.gene89556.t1 AT2G42830 27.632 152 107 1 1 152 16 164 8.50e-14 67.0
MS.gene89556.t1 AT5G15800 42.105 76 43 1 1 75 1 76 8.52e-14 67.0
MS.gene89556.t1 AT5G65060 40.000 70 41 1 1 69 1 70 8.67e-14 65.9
MS.gene89556.t1 AT2G03710 44.000 75 40 2 1 73 1 75 9.36e-14 67.0
MS.gene89556.t1 AT2G03710 44.000 75 40 2 1 73 1 75 9.46e-14 67.0
MS.gene89556.t1 AT2G42830 27.632 152 107 1 1 152 16 164 9.69e-14 66.6
MS.gene89556.t1 AT2G22540 54.545 55 25 0 1 55 1 55 1.00e-13 66.6
MS.gene89556.t1 AT5G65060 40.000 70 41 1 1 69 1 70 1.04e-13 65.9
MS.gene89556.t1 AT4G37435 33.562 146 82 7 1 142 1 135 1.06e-13 65.5
MS.gene89556.t1 AT3G58780 30.337 178 93 6 1 155 16 185 1.23e-13 67.0
MS.gene89556.t1 AT5G15800 42.105 76 43 1 1 75 1 76 1.28e-13 66.6
MS.gene89556.t1 AT3G58780 30.387 181 88 7 1 147 16 192 1.85e-13 65.9
MS.gene89556.t1 AT3G02310 40.789 76 44 1 1 75 1 76 1.88e-13 65.1
MS.gene89556.t1 AT3G58780 31.609 174 88 7 1 147 16 185 1.99e-13 65.9
MS.gene89556.t1 AT3G58780 45.588 68 37 0 1 68 16 83 2.19e-13 66.2
MS.gene89556.t1 AT3G58780 30.387 181 88 7 1 147 22 198 2.24e-13 65.9
MS.gene89556.t1 AT3G04100 42.424 66 38 0 2 67 14 79 4.59e-13 64.3
MS.gene89556.t1 AT3G02310 40.789 76 44 1 1 75 1 76 5.95e-13 64.7
MS.gene89556.t1 AT2G22630 31.250 128 69 2 1 109 1 128 6.06e-13 64.3
MS.gene89556.t1 AT2G22630 31.250 128 69 2 1 109 1 128 6.06e-13 64.3
MS.gene89556.t1 AT1G24260 42.857 70 39 1 1 69 1 70 9.11e-13 63.9
MS.gene89556.t1 AT1G24260 42.857 70 39 1 1 69 1 70 9.11e-13 63.9
MS.gene89556.t1 AT4G18960 42.647 68 39 0 2 69 18 85 1.11e-12 63.9
MS.gene89556.t1 AT1G24260 42.857 70 39 1 1 69 1 70 1.15e-12 63.5
MS.gene89556.t1 AT1G22130 30.323 155 96 3 1 153 1 145 1.47e-12 64.3
MS.gene89556.t1 AT1G77980 29.936 157 98 3 1 155 1 147 4.53e-12 62.8
MS.gene89556.t1 AT4G36590 42.647 68 39 0 2 69 7 74 5.75e-12 62.0
MS.gene89556.t1 AT2G03060 53.846 52 24 0 1 52 1 52 1.05e-11 62.0
MS.gene89556.t1 AT2G03060 53.846 52 24 0 1 52 1 52 1.08e-11 62.0
MS.gene89556.t1 AT2G03060 53.846 52 24 0 1 52 1 52 1.08e-11 62.0
MS.gene89556.t1 AT2G03060 53.846 52 24 0 1 52 1 52 1.08e-11 62.0
MS.gene89556.t1 AT1G18750 38.824 85 50 1 1 83 1 85 1.18e-11 61.6
MS.gene89556.t1 AT1G18750 38.824 85 50 1 1 83 1 85 1.21e-11 61.6
MS.gene89556.t1 AT1G18750 38.824 85 50 1 1 83 1 85 1.23e-11 61.6
MS.gene89556.t1 AT5G65080 39.394 66 40 0 1 66 8 73 1.91e-11 59.7
MS.gene89556.t1 AT1G77080 44.286 70 38 1 1 69 1 70 1.95e-11 59.3
MS.gene89556.t1 AT1G69540 30.088 113 73 2 1 112 1 108 2.05e-11 60.8
MS.gene89556.t1 AT1G77080 44.286 70 38 1 1 69 1 70 2.11e-11 59.3
MS.gene89556.t1 AT1G69540 30.088 113 73 2 1 112 1 108 2.37e-11 60.8
MS.gene89556.t1 AT1G77080 64.103 39 14 0 1 39 1 39 8.17e-11 57.0
MS.gene89556.t1 AT1G77080 44.286 70 38 1 1 69 1 70 8.36e-11 58.2

Find 26 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGCTTGGCAAAGAACTTA+TGG 0.243174 1.1:-51299931 MS.gene89556:CDS
GCTGGTAACCCATTTGCTTT+TGG 0.256960 1.1:-51300053 MS.gene89556:CDS
AATCTTGAGCCTTCAGGAAA+TGG 0.364643 1.1:-51299963 MS.gene89556:CDS
AGGCAAAATCTTGAGCCTTC+AGG 0.379855 1.1:-51299969 MS.gene89556:CDS
AATGCTAGAGTTGGTATAGT+TGG 0.416121 1.1:-51300086 MS.gene89556:CDS
GTTGGAGAACCAAAAGCAAA+TGG 0.436448 1.1:+51300044 None:intergenic
GTGCTTGGCAAAGAACTTAT+GGG 0.464747 1.1:-51299930 MS.gene89556:CDS
ATCACATAGGTTTCTTTGCA+AGG 0.474087 1.1:+51299757 None:intergenic
AAAGCAAATGGGTTACCAGC+AGG 0.484877 1.1:+51300056 None:intergenic
TCGACCACAGCTAGAAAAGT+TGG 0.499893 1.1:+51300026 None:intergenic
GTCTACATCAAGATCATCAT+AGG 0.528285 1.1:+51299851 None:intergenic
TTGATATTTCCATTTCCTGA+AGG 0.537216 1.1:+51299954 None:intergenic
TTGGAGAACCAAAAGCAAAT+GGG 0.538265 1.1:+51300045 None:intergenic
AATGGAAATATCAACGTGCT+TGG 0.540412 1.1:-51299945 MS.gene89556:CDS
AAGCAAATGGGTTACCAGCA+GGG 0.559264 1.1:+51300057 None:intergenic
TGCGGATATTGATGCAGCAT+CGG 0.580037 1.1:-51299790 MS.gene89556:CDS
AGCAAATGGGTTACCAGCAG+GGG 0.580138 1.1:+51300058 None:intergenic
ATTCTCTGTAATGCTAGAGT+TGG 0.585032 1.1:-51300095 MS.gene89556:CDS
TATGATGATCTTGATGTAGA+CGG 0.634624 1.1:-51299849 MS.gene89556:CDS
GAGTACCTTCGTGAAACACA+AGG 0.667967 1.1:-51300002 MS.gene89556:CDS
TTGTTGAGAACAGAGATGCA+AGG 0.674744 1.1:-51300175 MS.gene89556:CDS
ATTCACCTTGTGTTTCACGA+AGG 0.677540 1.1:+51299997 None:intergenic
AAGACAGAGACAATTGACAA+AGG 0.688522 1.1:-51299888 MS.gene89556:CDS
ATGCTGCATCAATATCCGCA+CGG 0.688839 1.1:+51299793 None:intergenic
TTCTTTGGAAGAGCTCCGTG+CGG 0.705364 1.1:-51299808 MS.gene89556:CDS
AAACACAAGGTGAATCATCG+AGG 0.729840 1.1:-51299989 MS.gene89556:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTTTCTAAGAGAAAGAA+TGG - chr1.1:51299815-51299834 MS.gene89556:CDS 25.0%
TAAAAAAGTGAAGGCTTCTT+TGG - chr1.1:51300138-51300157 MS.gene89556:CDS 30.0%
TATGATGATCTTGATGTAGA+CGG - chr1.1:51300112-51300131 MS.gene89556:CDS 30.0%
TTGATATTTCCATTTCCTGA+AGG + chr1.1:51300010-51300029 None:intergenic 30.0%
AAGACAGAGACAATTGACAA+AGG - chr1.1:51300073-51300092 MS.gene89556:CDS 35.0%
AATGGAAATATCAACGTGCT+TGG - chr1.1:51300016-51300035 MS.gene89556:CDS 35.0%
ATTCTCTGTAATGCTAGAGT+TGG - chr1.1:51299866-51299885 MS.gene89556:CDS 35.0%
GTCTACATCAAGATCATCAT+AGG + chr1.1:51300113-51300132 None:intergenic 35.0%
TTGGAGAACCAAAAGCAAAT+GGG + chr1.1:51299919-51299938 None:intergenic 35.0%
! AGACGGACTTAAAAAAGTGA+AGG - chr1.1:51300129-51300148 MS.gene89556:CDS 35.0%
!! AATGCTAGAGTTGGTATAGT+TGG - chr1.1:51299875-51299894 MS.gene89556:CDS 35.0%
AAACACAAGGTGAATCATCG+AGG - chr1.1:51299972-51299991 MS.gene89556:CDS 40.0%
AATCTTGAGCCTTCAGGAAA+TGG - chr1.1:51299998-51300017 MS.gene89556:CDS 40.0%
ATTCACCTTGTGTTTCACGA+AGG + chr1.1:51299967-51299986 None:intergenic 40.0%
GTGCTTGGCAAAGAACTTAT+GGG - chr1.1:51300031-51300050 MS.gene89556:CDS 40.0%
GTTGGAGAACCAAAAGCAAA+TGG + chr1.1:51299920-51299939 None:intergenic 40.0%
TTGTTGAGAACAGAGATGCA+AGG - chr1.1:51299786-51299805 MS.gene89556:CDS 40.0%
!!! TTCTCCAACTTTTCTAGCTG+TGG - chr1.1:51299931-51299950 MS.gene89556:CDS 40.0%
AGGCAAAATCTTGAGCCTTC+AGG - chr1.1:51299992-51300011 MS.gene89556:CDS 45.0%
ATGCTGCATCAATATCCGCA+CGG + chr1.1:51300171-51300190 None:intergenic 45.0%
CGTGCTTGGCAAAGAACTTA+TGG - chr1.1:51300030-51300049 MS.gene89556:CDS 45.0%
GAGTACCTTCGTGAAACACA+AGG - chr1.1:51299959-51299978 MS.gene89556:CDS 45.0%
TCGACCACAGCTAGAAAAGT+TGG + chr1.1:51299938-51299957 None:intergenic 45.0%
TGCGGATATTGATGCAGCAT+CGG - chr1.1:51300171-51300190 MS.gene89556:CDS 45.0%
! GCTGGTAACCCATTTGCTTT+TGG - chr1.1:51299908-51299927 MS.gene89556:CDS 45.0%
!! AAAGCAAATGGGTTACCAGC+AGG + chr1.1:51299908-51299927 None:intergenic 45.0%
!! AAGCAAATGGGTTACCAGCA+GGG + chr1.1:51299907-51299926 None:intergenic 45.0%
!!! ATAGTTGGTTTTACCCCTGC+TGG - chr1.1:51299890-51299909 MS.gene89556:CDS 45.0%
! TTCTTTGGAAGAGCTCCGTG+CGG - chr1.1:51300153-51300172 MS.gene89556:CDS 50.0%
!! AGCAAATGGGTTACCAGCAG+GGG + chr1.1:51299906-51299925 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 51299758 51300225 51299758 ID=MS.gene89556
chr1.1 mRNA 51299758 51300225 51299758 ID=MS.gene89556.t1;Parent=MS.gene89556
chr1.1 exon 51299758 51300225 51299758 ID=MS.gene89556.t1.exon1;Parent=MS.gene89556.t1
chr1.1 CDS 51299758 51300225 51299758 ID=cds.MS.gene89556.t1;Parent=MS.gene89556.t1
Gene Sequence

>MS.gene89556

ATGGGTCGTAAAAAAATAGGTATTGAATTTGTTGAGAACAGAGATGCAAGGTATGTCACATTTTCTAAGAGAAAGAATGGTCTTTTCAAGAAAGCAAATGAGTTATCAATTCTCTGTAATGCTAGAGTTGGTATAGTTGGTTTTACCCCTGCTGGTAACCCATTTGCTTTTGGTTCTCCAACTTTTCTAGCTGTGGTCGATGAGTACCTTCGTGAAACACAAGGTGAATCATCGAGGCAAAATCTTGAGCCTTCAGGAAATGGAAATATCAACGTGCTTGGCAAAGAACTTATGGGTGTGACGAAAGAGCTGAAGAAGACAGAGACAATTGACAAAGGTAAACTACTTATTGCCTATGATGATCTTGATGTAGACGGACTTAAAAAAGTGAAGGCTTCTTTGGAAGAGCTCCGTGCGGATATTGATGCAGCATCGGCTTTGCTTCTCCTTGCAAAGAAACCTATGTGA
Protein sequence

>MS.gene89556.t1

MGRKKIGIEFVENRDARYVTFSKRKNGLFKKANELSILCNARVGIVGFTPAGNPFAFGSPTFLAVVDEYLRETQGESSRQNLEPSGNGNINVLGKELMGVTKELKKTETIDKGKLLIAYDDLDVDGLKKVKASLEELRADIDAASALLLLAKKPM