AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89580.t1 MTR_1g069725 98.504 468 7 0 15 482 1 468 0.0 961
MS.gene89580.t1 MTR_7g074650 53.803 355 156 5 126 476 441 791 3.59e-127 389
MS.gene89580.t1 MTR_4g076020 47.486 358 165 6 126 476 87 428 1.30e-105 322
MS.gene89580.t1 MTR_7g027190 34.359 390 227 9 113 478 290 674 2.01e-63 218
MS.gene89580.t1 MTR_3g065980 33.850 387 220 9 115 476 164 539 6.73e-60 206
MS.gene89580.t1 MTR_4g102790 35.696 381 223 10 116 477 285 662 1.41e-57 202
MS.gene89580.t1 MTR_4g077760 33.246 382 213 11 120 476 190 554 6.91e-49 176
MS.gene89580.t1 MTR_2g082090 30.787 432 261 14 68 476 162 578 1.11e-48 176
MS.gene89580.t1 MTR_5g058860 32.587 402 241 10 105 478 99 498 1.74e-47 171
MS.gene89580.t1 MTR_3g072710 31.910 398 233 12 116 481 113 504 1.11e-46 169
MS.gene89580.t1 MTR_1g029420 32.275 378 221 12 123 476 225 591 1.74e-46 170
MS.gene89580.t1 MTR_8g442410 32.821 390 222 12 115 476 147 524 2.38e-45 166
MS.gene89580.t1 MTR_3g089055 31.915 376 225 11 123 476 198 564 1.00e-44 165
MS.gene89580.t1 MTR_3g089055 31.915 376 225 11 123 476 203 569 1.15e-44 165
MS.gene89580.t1 MTR_1g096030 31.078 399 230 15 113 476 70 458 2.50e-43 159
MS.gene89580.t1 MTR_4g104020 29.070 430 262 13 72 478 112 521 1.90e-42 158
MS.gene89580.t1 MTR_4g133660 30.649 385 233 12 118 478 170 544 3.16e-42 157
MS.gene89580.t1 MTR_2g097410 27.865 384 247 11 117 477 365 741 1.59e-40 155
MS.gene89580.t1 MTR_3g056110 29.973 377 239 12 119 476 171 541 4.77e-40 152
MS.gene89580.t1 MTR_5g094450 28.935 432 278 14 69 476 105 531 7.31e-40 151
MS.gene89580.t1 MTR_5g097480 29.787 376 241 10 119 476 173 543 3.50e-39 149
MS.gene89580.t1 MTR_7g062120 27.751 418 262 14 79 476 342 739 2.09e-37 146
MS.gene89580.t1 MTR_2g034280 27.979 386 252 10 113 476 193 574 7.63e-36 140
MS.gene89580.t1 MTR_4g064150 26.492 419 272 13 87 476 321 732 8.58e-36 141
MS.gene89580.t1 MTR_4g076140 28.146 437 237 13 115 479 40 471 1.46e-35 138
MS.gene89580.t1 MTR_3g022830 26.353 425 246 10 117 479 19 438 2.02e-35 137
MS.gene89580.t1 MTR_4g064120 25.707 389 254 12 115 478 246 624 3.11e-35 139
MS.gene89580.t1 MTR_4g064180 25.714 385 254 11 115 474 246 623 7.01e-35 138
MS.gene89580.t1 MTR_2g097310 27.517 447 294 14 50 477 203 638 7.55e-35 138
MS.gene89580.t1 MTR_2g034260 28.093 388 251 11 113 476 200 583 9.65e-35 137
MS.gene89580.t1 MTR_7g109580 27.177 379 257 9 113 476 179 553 8.62e-34 134
MS.gene89580.t1 MTR_4g064160 28.609 381 244 13 118 477 311 684 1.35e-33 134
MS.gene89580.t1 MTR_4g064200 28.385 384 239 14 118 477 279 650 2.31e-33 134
MS.gene89580.t1 MTR_2g034250 26.478 389 257 11 113 476 200 584 2.41e-33 133
MS.gene89580.t1 MTR_2g026250 26.448 397 264 10 106 478 205 597 3.69e-32 130
MS.gene89580.t1 MTR_4g097080 27.056 377 245 12 123 476 133 502 6.57e-31 125
MS.gene89580.t1 MTR_2g097350 27.119 413 269 13 81 476 242 639 1.04e-30 125
MS.gene89580.t1 MTR_2g097467 25.984 381 251 12 117 476 283 653 1.28e-30 125
MS.gene89580.t1 MTR_2g097390 27.752 436 282 15 58 476 221 640 1.15e-29 122
MS.gene89580.t1 MTR_5g015490 27.154 383 243 14 123 476 114 489 1.06e-28 119
MS.gene89580.t1 MTR_2g097473 26.247 381 250 13 117 476 283 653 1.49e-28 119
MS.gene89580.t1 MTR_5g009080 33.333 204 129 3 115 313 48 249 3.59e-28 117
MS.gene89580.t1 MTR_5g009080 34.483 145 91 4 337 479 338 480 7.21e-16 80.1
MS.gene89580.t1 MTR_2g089100 24.627 402 258 10 117 477 46 443 1.70e-27 115
MS.gene89580.t1 MTR_2g097380 28.532 361 215 15 130 477 231 561 2.08e-27 115
MS.gene89580.t1 MTR_2g097463 25.729 377 257 12 118 477 285 655 2.89e-27 115
MS.gene89580.t1 MTR_8g093070 26.542 373 249 11 119 477 135 496 9.71e-27 113
MS.gene89580.t1 MTR_2g099110 25.714 455 290 17 59 476 7 450 3.56e-26 111
MS.gene89580.t1 MTR_4g026485 24.725 364 235 11 133 478 283 625 2.00e-23 103
MS.gene89580.t1 MTR_7g057230 27.568 370 243 12 124 476 295 656 6.09e-22 99.8
MS.gene89580.t1 MTR_0092s0100 27.005 374 245 15 120 478 369 729 4.77e-21 97.1
MS.gene89580.t1 MTR_0092s0100 27.005 374 245 15 120 478 372 732 5.01e-21 97.1
MS.gene89580.t1 MTR_1g086970 24.927 341 233 11 156 476 140 477 1.36e-20 94.7
MS.gene89580.t1 MTR_6g047750 25.469 373 251 10 124 476 296 661 5.46e-20 93.6
MS.gene89580.t1 MTR_4g095500 23.923 418 245 14 123 476 59 467 1.18e-18 89.0
MS.gene89580.t1 MTR_5g015950 23.389 419 248 17 123 476 35 445 3.60e-18 87.0
MS.gene89580.t1 MTR_3g053270 23.389 419 248 17 123 476 35 445 3.60e-18 87.0
MS.gene89580.t1 MTR_8g020840 23.785 391 247 12 123 476 171 547 2.61e-15 79.0
MS.gene89580.t1 MTR_8g077940 24.161 298 204 10 193 478 255 542 3.89e-15 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89580.t1 AT3G54220 51.646 395 178 6 95 480 263 653 1.83e-129 390
MS.gene89580.t1 AT5G41920 47.453 373 179 7 117 479 37 402 2.08e-112 338
MS.gene89580.t1 AT1G14920 34.218 377 229 11 115 480 164 532 7.13e-58 200
MS.gene89580.t1 AT2G01570 34.392 378 229 10 115 481 216 585 4.48e-57 199
MS.gene89580.t1 AT1G66350 34.595 370 223 9 115 476 147 505 1.72e-56 196
MS.gene89580.t1 AT3G03450 33.600 375 231 11 115 476 175 544 2.26e-56 196
MS.gene89580.t1 AT5G17490 33.602 372 229 12 115 476 152 515 7.84e-53 186
MS.gene89580.t1 AT5G66770 33.690 374 224 13 120 476 217 583 3.76e-51 183
MS.gene89580.t1 AT1G63100 33.075 387 232 11 116 477 245 629 8.84e-51 183
MS.gene89580.t1 AT1G63100 33.075 387 232 11 116 477 270 654 1.60e-50 182
MS.gene89580.t1 AT3G50650 33.929 336 200 10 159 476 210 541 1.44e-44 164
MS.gene89580.t1 AT2G04890 30.541 370 239 10 119 476 49 412 1.77e-42 156
MS.gene89580.t1 AT1G55580 33.446 296 179 7 198 476 150 444 2.36e-42 156
MS.gene89580.t1 AT1G50600 30.024 413 256 12 86 476 124 525 1.24e-38 147
MS.gene89580.t1 AT1G21450 30.024 413 258 12 88 476 187 592 2.78e-38 147
MS.gene89580.t1 AT1G50600 30.024 413 256 12 86 476 199 600 5.07e-38 147
MS.gene89580.t1 AT1G50600 30.024 413 256 12 86 476 195 596 5.08e-38 147
MS.gene89580.t1 AT1G07530 29.219 397 253 13 105 481 381 769 5.67e-38 148
MS.gene89580.t1 AT5G48150 29.491 373 237 11 124 476 123 489 1.04e-37 144
MS.gene89580.t1 AT5G48150 29.491 373 237 11 124 476 123 489 1.04e-37 144
MS.gene89580.t1 AT5G48150 29.491 373 237 11 124 476 123 489 1.04e-37 144
MS.gene89580.t1 AT5G48150 29.491 373 237 11 124 476 123 489 1.04e-37 144
MS.gene89580.t1 AT2G29065 27.877 391 246 11 116 477 245 628 1.04e-35 140
MS.gene89580.t1 AT1G07520 26.735 389 252 10 116 477 147 529 1.59e-35 139
MS.gene89580.t1 AT1G07520 26.735 389 252 10 116 477 147 529 1.59e-35 139
MS.gene89580.t1 AT4G08250 29.231 390 247 13 116 482 100 483 1.91e-35 138
MS.gene89580.t1 AT1G07520 26.735 389 252 10 116 477 312 694 2.51e-35 140
MS.gene89580.t1 AT1G07520 26.735 389 252 10 116 477 311 693 2.53e-35 140
MS.gene89580.t1 AT2G29060 26.913 379 252 11 119 476 280 654 8.68e-34 135
MS.gene89580.t1 AT2G29060 26.913 379 252 11 119 476 317 691 1.14e-33 135
MS.gene89580.t1 AT5G59450 25.840 387 248 13 118 476 222 597 2.31e-33 133
MS.gene89580.t1 AT4G17230 29.443 377 243 10 118 476 153 524 6.21e-33 131
MS.gene89580.t1 AT4G17230 29.443 377 243 10 118 476 153 524 6.21e-33 131
MS.gene89580.t1 AT3G46600 26.893 383 251 11 115 476 204 578 1.86e-31 127
MS.gene89580.t1 AT3G46600 26.893 383 251 11 115 476 172 546 2.67e-31 127
MS.gene89580.t1 AT3G46600 26.933 375 245 11 123 476 4 370 1.07e-30 122
MS.gene89580.t1 AT4G37650 25.831 391 247 14 122 476 145 528 1.70e-28 119
MS.gene89580.t1 AT2G37650 24.403 377 261 11 118 476 330 700 7.53e-27 114
MS.gene89580.t1 AT2G37650 24.403 377 261 11 118 476 342 712 1.04e-26 114
MS.gene89580.t1 AT5G52510 28.125 384 232 13 124 476 269 639 1.90e-26 113
MS.gene89580.t1 AT3G49950 25.191 393 258 12 114 476 21 407 7.62e-24 103
MS.gene89580.t1 AT1G50420 30.909 220 136 5 108 313 35 252 1.31e-23 103
MS.gene89580.t1 AT1G50420 33.793 145 92 4 337 479 339 481 1.58e-16 82.4
MS.gene89580.t1 AT2G45160 25.664 339 220 12 159 478 315 640 2.72e-20 94.7
MS.gene89580.t1 AT3G60630 26.797 306 195 10 192 478 328 623 5.41e-20 93.6
MS.gene89580.t1 AT4G00150 27.666 347 217 15 148 481 233 558 1.88e-19 91.7
MS.gene89580.t1 AT4G36710 23.709 426 286 15 79 476 70 484 7.60e-19 89.7
MS.gene89580.t1 AT3G13840 24.368 435 275 16 76 476 95 509 1.39e-18 89.0

Find 87 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAACCACTATTACTATTA+TGG 0.175209 1.1:+51649846 None:intergenic
TACCCTATAGCATGTAAATT+TGG 0.224828 1.1:-51649299 MS.gene89580:CDS
TATTCTGTCCTCCCAAGTTT+AGG 0.241115 1.1:+51650002 None:intergenic
CTTGGACTTGTAGAACTTCT+AGG 0.244624 1.1:-51648737 MS.gene89580:CDS
GTTTGTATACTGCTTCTTCT+TGG 0.256195 1.1:-51648755 MS.gene89580:CDS
TAGCATTCATATCATTGATT+TGG 0.267686 1.1:-51649492 MS.gene89580:CDS
ATGATCCAAGTGAATCAAAA+AGG 0.269992 1.1:+51649057 None:intergenic
TTTGAGACTTCTTGAAGAAT+TGG 0.271799 1.1:-51649171 MS.gene89580:CDS
ATTCTGTCCTCCCAAGTTTA+GGG 0.294515 1.1:+51650003 None:intergenic
ATGTTTCCATGTTACAAATT+AGG 0.299869 1.1:-51649265 MS.gene89580:CDS
CCACTGCACATTCCATTAGA+AGG 0.301310 1.1:+51649795 None:intergenic
GAATTTGATAACCCTTCTAA+TGG 0.332684 1.1:-51649807 MS.gene89580:CDS
TCACCAAATTTACATGCTAT+AGG 0.333976 1.1:+51649296 None:intergenic
CACCAAATTTACATGCTATA+GGG 0.337950 1.1:+51649297 None:intergenic
GTGAAGAAAAGTTTAGGCTT+TGG 0.358361 1.1:-51648935 MS.gene89580:CDS
GCCATTGAATTAGCACTCAT+TGG 0.370427 1.1:+51648873 None:intergenic
ATGAGACACTTGCAGTTCAT+TGG 0.379453 1.1:-51649238 MS.gene89580:CDS
TATAGTCTTGCTCAAGTTGA+TGG 0.384763 1.1:-51648807 MS.gene89580:CDS
TGCATAGTGATGATTCTAAC+AGG 0.385974 1.1:-51649031 MS.gene89580:CDS
CATTCTTTGTATGATTCAAC+TGG 0.386760 1.1:-51649209 MS.gene89580:CDS
CAAAACCATAATAGTAATAG+TGG 0.396327 1.1:-51649851 MS.gene89580:CDS
AGAATAATGAGGTGAGTGAT+TGG 0.398603 1.1:-51649985 MS.gene89580:CDS
CTCAAGTTGATGGCATGTTA+AGG 0.419170 1.1:-51648797 MS.gene89580:CDS
TAAGGATTTGTTTGGATTGG+AGG 0.422635 1.1:+51650052 None:intergenic
GGATAAGGATTTGTTTGGAT+TGG 0.427644 1.1:+51650049 None:intergenic
TTTGTTTCTATGATGAAAGT+AGG 0.430271 1.1:-51650169 None:intergenic
AATGTGAAAATTTGATGAAA+GGG 0.441329 1.1:+51649558 None:intergenic
ATCAACAATATATTAGCAAT+TGG 0.455848 1.1:-51648975 MS.gene89580:CDS
AGAAAATCACTCCCTAAACT+TGG 0.459534 1.1:-51650014 MS.gene89580:CDS
GAAGTGGTGAAGAAAAGTTT+AGG 0.462022 1.1:-51648941 MS.gene89580:CDS
GCAATTTCAGTTGAAAATCA+TGG 0.462156 1.1:-51649773 MS.gene89580:CDS
ATGATTCAACTGGACCTGAT+TGG 0.462834 1.1:-51649199 MS.gene89580:CDS
AATGCTATTACAACGGTTCA+CGG 0.473963 1.1:+51649508 None:intergenic
CGGCCTTCAGTTCGAATGAC+CGG 0.476526 1.1:-51649407 MS.gene89580:CDS
AGTGGTTATGAATGTGATCA+AGG 0.478735 1.1:-51649833 MS.gene89580:CDS
ATGGAACTTCTTGTTGAGAC+GGG 0.483246 1.1:-51649371 MS.gene89580:CDS
GACCGGGATGGGAGCATCGA+TGG 0.487077 1.1:-51649390 MS.gene89580:CDS
ATATCATGCAAGGGCTTCAA+TGG 0.488838 1.1:-51649469 MS.gene89580:CDS
ATGGCATGTTAAGGCTTGGT+TGG 0.496635 1.1:-51648788 MS.gene89580:CDS
TCACGGCTTCGAGAATTGCT+TGG 0.498738 1.1:+51649525 None:intergenic
GAATAATGAGGTGAGTGATT+GGG 0.510103 1.1:-51649984 MS.gene89580:CDS
ATGTGTGGATGAATCATGTT+TGG 0.512526 1.1:+51650124 None:intergenic
GGATTTGTTTGGATTGGAGG+TGG 0.513635 1.1:+51650055 None:intergenic
TCACATACTCGCGACTCGAA+TGG 0.516098 1.1:-51649435 MS.gene89580:CDS
TCCAATGAGTGCTAATTCAA+TGG 0.516236 1.1:-51648874 MS.gene89580:CDS
GTAGAACAAGATGTTAACAT+TGG 0.523714 1.1:-51649128 MS.gene89580:CDS
TGAACTGCAAGTGTCTCATT+AGG 0.524179 1.1:+51649242 None:intergenic
AACAATATATTAGCAATTGG+TGG 0.529310 1.1:-51648972 MS.gene89580:CDS
TCAGTTCGAATGACCGGGAT+GGG 0.530352 1.1:-51649401 MS.gene89580:CDS
CACTGCACATTCCATTAGAA+GGG 0.530702 1.1:+51649796 None:intergenic
GAACAAGATGTTAACATTGG+AGG 0.531900 1.1:-51649125 MS.gene89580:CDS
CATACTCGCGACTCGAATGG+AGG 0.534467 1.1:-51649432 MS.gene89580:CDS
ATCCCGGTCATTCGAACTGA+AGG 0.539893 1.1:+51649404 None:intergenic
ATTGATTTGGATATCATGCA+AGG 0.540452 1.1:-51649479 MS.gene89580:CDS
AGAGTGATGAATACATGGCT+TGG 0.543301 1.1:-51649647 MS.gene89580:CDS
ATCCACACATGCATGAAACA+TGG 0.543955 1.1:-51650111 MS.gene89580:CDS
TTCCATCGATGCTCCCATCC+CGG 0.545444 1.1:+51649388 None:intergenic
TCATGTTTGGATTTGCATGA+AGG 0.546629 1.1:+51650137 None:intergenic
AACATGTATTCACCAGCTCA+TGG 0.559958 1.1:-51648831 MS.gene89580:CDS
TGATATGAATGCTATTACAA+CGG 0.565293 1.1:+51649501 None:intergenic
AACAAGATGTTAACATTGGA+GGG 0.567098 1.1:-51649124 MS.gene89580:CDS
CACTTGTAGAGAAGAATGAA+TGG 0.567099 1.1:+51649595 None:intergenic
AAATGTGAAAATTTGATGAA+AGG 0.571299 1.1:+51649557 None:intergenic
GATGGAACTTCTTGTTGAGA+CGG 0.571703 1.1:-51649372 MS.gene89580:CDS
ATTAGGCCTAATTTGTAACA+TGG 0.571929 1.1:+51649259 None:intergenic
AATGCAATGAACCAACAAAA+CGG 0.577957 1.1:+51649090 None:intergenic
GGCCTTCAGTTCGAATGACC+GGG 0.584830 1.1:-51649406 MS.gene89580:CDS
AACAGGAACATTGTTGAACA+TGG 0.588599 1.1:-51649014 MS.gene89580:CDS
TTCAGTTGAAAATCATGGTG+AGG 0.588959 1.1:-51649768 MS.gene89580:CDS
ATGTGAAAATTTGATGAAAG+GGG 0.589901 1.1:+51649559 None:intergenic
TTGATTTGGATATCATGCAA+GGG 0.592147 1.1:-51649478 MS.gene89580:CDS
TTCAGTTCGAATGACCGGGA+TGG 0.594862 1.1:-51649402 MS.gene89580:CDS
TCCACACATGCATGAAACAT+GGG 0.596875 1.1:-51650110 MS.gene89580:CDS
GTTGATGGCATGTTAAGGCT+TGG 0.599004 1.1:-51648792 MS.gene89580:CDS
GAAAATCACTCCCTAAACTT+GGG 0.607746 1.1:-51650013 MS.gene89580:CDS
TTAGTAGAGTGATGAATACA+TGG 0.620787 1.1:-51649652 MS.gene89580:CDS
ATGGTTCTATGATCAATCAA+AGG 0.621623 1.1:+51649614 None:intergenic
ATACTCGCGACTCGAATGGA+GGG 0.625698 1.1:-51649431 MS.gene89580:CDS
GCAAGACTATAACCATGAGC+TGG 0.626630 1.1:+51648819 None:intergenic
TCCCATGTTTCATGCATGTG+TGG 0.627315 1.1:+51650109 None:intergenic
ATTGGTGGACCTAAGAGAAG+TGG 0.635188 1.1:-51648957 MS.gene89580:CDS
CTTGGGAGGACAGAATAATG+AGG 0.642986 1.1:-51649996 MS.gene89580:CDS
CCTTCTAATGGAATGTGCAG+TGG 0.643323 1.1:-51649795 MS.gene89580:CDS
AATCACTCCCTAAACTTGGG+AGG 0.649390 1.1:-51650010 MS.gene89580:CDS
TGGAACTTCTTGTTGAGACG+GGG 0.658302 1.1:-51649370 MS.gene89580:CDS
GTGGTTATGAATGTGATCAA+GGG 0.672291 1.1:-51649832 MS.gene89580:CDS
TCGCGACTCGAATGGAGGGT+CGG 0.673281 1.1:-51649427 MS.gene89580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTGAAAATTTGATGAA+AGG + chr1.1:51649340-51649359 None:intergenic 20.0%
!! AATGTGAAAATTTGATGAAA+GGG + chr1.1:51649339-51649358 None:intergenic 20.0%
!! ATCAACAATATATTAGCAAT+TGG - chr1.1:51649919-51649938 MS.gene89580:CDS 20.0%
! AACAATATATTAGCAATTGG+TGG - chr1.1:51649922-51649941 MS.gene89580:CDS 25.0%
! ATGTGAAAATTTGATGAAAG+GGG + chr1.1:51649338-51649357 None:intergenic 25.0%
! ATGTTTCCATGTTACAAATT+AGG - chr1.1:51649629-51649648 MS.gene89580:CDS 25.0%
! CAAAACCATAATAGTAATAG+TGG - chr1.1:51649043-51649062 MS.gene89580:CDS 25.0%
! CATAACCACTATTACTATTA+TGG + chr1.1:51649051-51649070 None:intergenic 25.0%
! TGATATGAATGCTATTACAA+CGG + chr1.1:51649396-51649415 None:intergenic 25.0%
!! TAGCATTCATATCATTGATT+TGG - chr1.1:51649402-51649421 MS.gene89580:CDS 25.0%
!! TCTACCAAAGTTATGATTTT+TGG + chr1.1:51649751-51649770 None:intergenic 25.0%
!!! ATGGTTTTGAAATAAATCTG+AGG + chr1.1:51649032-51649051 None:intergenic 25.0%
!!! TTATTATCAGAAGTGTTTTG+TGG + chr1.1:51648974-51648993 None:intergenic 25.0%
AACAAGATGTTAACATTGGA+GGG - chr1.1:51649770-51649789 MS.gene89580:CDS 30.0%
AATGCAATGAACCAACAAAA+CGG + chr1.1:51649807-51649826 None:intergenic 30.0%
ATGATCCAAGTGAATCAAAA+AGG + chr1.1:51649840-51649859 None:intergenic 30.0%
CACCAAATTTACATGCTATA+GGG + chr1.1:51649600-51649619 None:intergenic 30.0%
CATTCTTTGTATGATTCAAC+TGG - chr1.1:51649685-51649704 MS.gene89580:CDS 30.0%
GCAATTTCAGTTGAAAATCA+TGG - chr1.1:51649121-51649140 MS.gene89580:CDS 30.0%
GGAACCAAAAATCATAACTT+TGG - chr1.1:51649744-51649763 MS.gene89580:CDS 30.0%
GTAGAACAAGATGTTAACAT+TGG - chr1.1:51649766-51649785 MS.gene89580:CDS 30.0%
TACCCTATAGCATGTAAATT+TGG - chr1.1:51649595-51649614 MS.gene89580:CDS 30.0%
TCACCAAATTTACATGCTAT+AGG + chr1.1:51649601-51649620 None:intergenic 30.0%
TGATCCAAGTGAATCAAAAA+GGG + chr1.1:51649839-51649858 None:intergenic 30.0%
TTAGTAGAGTGATGAATACA+TGG - chr1.1:51649242-51649261 MS.gene89580:CDS 30.0%
! ATCTTTCGAATTTTGCAAGA+AGG - chr1.1:51649551-51649570 MS.gene89580:CDS 30.0%
! ATGGTTCTATGATCAATCAA+AGG + chr1.1:51649283-51649302 None:intergenic 30.0%
! ATTAGGCCTAATTTGTAACA+TGG + chr1.1:51649638-51649657 None:intergenic 30.0%
! GAATTTGATAACCCTTCTAA+TGG - chr1.1:51649087-51649106 MS.gene89580:CDS 30.0%
! TTTGAGACTTCTTGAAGAAT+TGG - chr1.1:51649723-51649742 MS.gene89580:CDS 30.0%
!! ATTGATTTGGATATCATGCA+AGG - chr1.1:51649415-51649434 MS.gene89580:CDS 30.0%
!! GTTTTGGATAAGGATTTGTT+TGG + chr1.1:51648853-51648872 None:intergenic 30.0%
!! TTGATTTGGATATCATGCAA+GGG - chr1.1:51649416-51649435 MS.gene89580:CDS 30.0%
AACAGGAACATTGTTGAACA+TGG - chr1.1:51649880-51649899 MS.gene89580:CDS 35.0%
AATGCTATTACAACGGTTCA+CGG + chr1.1:51649389-51649408 None:intergenic 35.0%
AGAAAATCACTCCCTAAACT+TGG - chr1.1:51648880-51648899 MS.gene89580:CDS 35.0%
AGAATAATGAGGTGAGTGAT+TGG - chr1.1:51648909-51648928 MS.gene89580:CDS 35.0%
AGTGGTTATGAATGTGATCA+AGG - chr1.1:51649061-51649080 MS.gene89580:CDS 35.0%
ATGTGTGGATGAATCATGTT+TGG + chr1.1:51648773-51648792 None:intergenic 35.0%
CACTTGTAGAGAAGAATGAA+TGG + chr1.1:51649302-51649321 None:intergenic 35.0%
GAAAATCACTCCCTAAACTT+GGG - chr1.1:51648881-51648900 MS.gene89580:CDS 35.0%
GAACAAGATGTTAACATTGG+AGG - chr1.1:51649769-51649788 MS.gene89580:CDS 35.0%
GAAGTGGTGAAGAAAAGTTT+AGG - chr1.1:51649953-51649972 MS.gene89580:CDS 35.0%
GAATAATGAGGTGAGTGATT+GGG - chr1.1:51648910-51648929 MS.gene89580:CDS 35.0%
GTGAAGAAAAGTTTAGGCTT+TGG - chr1.1:51649959-51649978 MS.gene89580:CDS 35.0%
GTGGTTATGAATGTGATCAA+GGG - chr1.1:51649062-51649081 MS.gene89580:CDS 35.0%
GTTTGTATACTGCTTCTTCT+TGG - chr1.1:51650139-51650158 MS.gene89580:CDS 35.0%
TCATGTTTGGATTTGCATGA+AGG + chr1.1:51648760-51648779 None:intergenic 35.0%
TCCAATGAGTGCTAATTCAA+TGG - chr1.1:51650020-51650039 MS.gene89580:CDS 35.0%
TGCATAGTGATGATTCTAAC+AGG - chr1.1:51649863-51649882 MS.gene89580:CDS 35.0%
TTCAGTTGAAAATCATGGTG+AGG - chr1.1:51649126-51649145 MS.gene89580:CDS 35.0%
! AGTCTCAAAGTTTTCCAATC+AGG + chr1.1:51649712-51649731 None:intergenic 35.0%
! GGATAAGGATTTGTTTGGAT+TGG + chr1.1:51648848-51648867 None:intergenic 35.0%
! TAAGGATTTGTTTGGATTGG+AGG + chr1.1:51648845-51648864 None:intergenic 35.0%
! TCAGCACATGATGTTTTGTA+AGG + chr1.1:51649190-51649209 None:intergenic 35.0%
! TTTAGGGAGTGATTTTCTGT+TGG + chr1.1:51648878-51648897 None:intergenic 35.0%
! TTTTCTTCACCACTTCTCTT+AGG + chr1.1:51649949-51649968 None:intergenic 35.0%
!! TAACATTGGAGGGTCATTTT+TGG - chr1.1:51649780-51649799 MS.gene89580:CDS 35.0%
!! TATAGTCTTGCTCAAGTTGA+TGG - chr1.1:51650087-51650106 MS.gene89580:CDS 35.0%
!! TCATTTTTGGACCGTTTTGT+TGG - chr1.1:51649793-51649812 MS.gene89580:CDS 35.0%
!!! TGATTTTCTGTTGGTGGTTT+TGG + chr1.1:51648869-51648888 None:intergenic 35.0%
!!! TGCAAGAAATAGTTTTGAGC+AGG - chr1.1:51649996-51650015 MS.gene89580:CDS 35.0%
AACATGTATTCACCAGCTCA+TGG - chr1.1:51650063-51650082 MS.gene89580:CDS 40.0%
AGAGTGATGAATACATGGCT+TGG - chr1.1:51649247-51649266 MS.gene89580:CDS 40.0%
ATATCATGCAAGGGCTTCAA+TGG - chr1.1:51649425-51649444 MS.gene89580:CDS 40.0%
ATCCACACATGCATGAAACA+TGG - chr1.1:51648783-51648802 MS.gene89580:CDS 40.0%
ATGAGACACTTGCAGTTCAT+TGG - chr1.1:51649656-51649675 MS.gene89580:CDS 40.0%
ATGATTCAACTGGACCTGAT+TGG - chr1.1:51649695-51649714 MS.gene89580:CDS 40.0%
ATGGAACTTCTTGTTGAGAC+GGG - chr1.1:51649523-51649542 MS.gene89580:CDS 40.0%
ATTCTGTCCTCCCAAGTTTA+GGG + chr1.1:51648894-51648913 None:intergenic 40.0%
CACTGCACATTCCATTAGAA+GGG + chr1.1:51649101-51649120 None:intergenic 40.0%
CTTGGACTTGTAGAACTTCT+AGG - chr1.1:51650157-51650176 MS.gene89580:CDS 40.0%
GATGGAACTTCTTGTTGAGA+CGG - chr1.1:51649522-51649541 MS.gene89580:CDS 40.0%
GCCATTGAATTAGCACTCAT+TGG + chr1.1:51650024-51650043 None:intergenic 40.0%
GCGAGTATGTGAAAAAAAGC+AGG + chr1.1:51649451-51649470 None:intergenic 40.0%
TATTCTGTCCTCCCAAGTTT+AGG + chr1.1:51648895-51648914 None:intergenic 40.0%
TCCAAGTGAATCAAAAAGGG+TGG + chr1.1:51649836-51649855 None:intergenic 40.0%
TCCACACATGCATGAAACAT+GGG - chr1.1:51648784-51648803 MS.gene89580:CDS 40.0%
TGAACTGCAAGTGTCTCATT+AGG + chr1.1:51649655-51649674 None:intergenic 40.0%
! TCGAATTTTGCAAGAAGGCT+CGG - chr1.1:51649556-51649575 MS.gene89580:CDS 40.0%
!! CTCAAGTTGATGGCATGTTA+AGG - chr1.1:51650097-51650116 MS.gene89580:CDS 40.0%
!! TCCACCCTTTTTGATTCACT+TGG - chr1.1:51649832-51649851 MS.gene89580:CDS 40.0%
!!! TCTGTTGGTGGTTTTGGATA+AGG + chr1.1:51648863-51648882 None:intergenic 40.0%
AATCACTCCCTAAACTTGGG+AGG - chr1.1:51648884-51648903 MS.gene89580:CDS 45.0%
CCACTGCACATTCCATTAGA+AGG + chr1.1:51649102-51649121 None:intergenic 45.0%
CCTTCTAATGGAATGTGCAG+TGG - chr1.1:51649099-51649118 MS.gene89580:CDS 45.0%
CTTGGGAGGACAGAATAATG+AGG - chr1.1:51648898-51648917 MS.gene89580:CDS 45.0%
GCAAGACTATAACCATGAGC+TGG + chr1.1:51650078-51650097 None:intergenic 45.0%
TCCCATGTTTCATGCATGTG+TGG + chr1.1:51648788-51648807 None:intergenic 45.0%
TGGAACTTCTTGTTGAGACG+GGG - chr1.1:51649524-51649543 MS.gene89580:CDS 45.0%
! AGGGAGTGATTTTCTGTTGG+TGG + chr1.1:51648875-51648894 None:intergenic 45.0%
! ATGGCATGTTAAGGCTTGGT+TGG - chr1.1:51650106-51650125 MS.gene89580:CDS 45.0%
! ATTGGTGGACCTAAGAGAAG+TGG - chr1.1:51649937-51649956 MS.gene89580:CDS 45.0%
! GGATTTGTTTGGATTGGAGG+TGG + chr1.1:51648842-51648861 None:intergenic 45.0%
!! GTTGATGGCATGTTAAGGCT+TGG - chr1.1:51650102-51650121 MS.gene89580:CDS 45.0%
ATACTCGCGACTCGAATGGA+GGG - chr1.1:51649463-51649482 MS.gene89580:CDS 50.0%
ATCCCGGTCATTCGAACTGA+AGG + chr1.1:51649493-51649512 None:intergenic 50.0%
TCACATACTCGCGACTCGAA+TGG - chr1.1:51649459-51649478 MS.gene89580:CDS 50.0%
TCACGGCTTCGAGAATTGCT+TGG + chr1.1:51649372-51649391 None:intergenic 50.0%
TCAGTTCGAATGACCGGGAT+GGG - chr1.1:51649493-51649512 MS.gene89580:CDS 50.0%
TTCAGTTCGAATGACCGGGA+TGG - chr1.1:51649492-51649511 MS.gene89580:CDS 50.0%
CATACTCGCGACTCGAATGG+AGG - chr1.1:51649462-51649481 MS.gene89580:CDS 55.0%
CGGCCTTCAGTTCGAATGAC+CGG - chr1.1:51649487-51649506 MS.gene89580:CDS 55.0%
GGCCTTCAGTTCGAATGACC+GGG - chr1.1:51649488-51649507 MS.gene89580:CDS 55.0%
TTCCATCGATGCTCCCATCC+CGG + chr1.1:51649509-51649528 None:intergenic 55.0%
TCGCGACTCGAATGGAGGGT+CGG - chr1.1:51649467-51649486 MS.gene89580:CDS 60.0%
!! GACCGGGATGGGAGCATCGA+TGG - chr1.1:51649504-51649523 MS.gene89580:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 51648734 51650182 51648734 ID=MS.gene89580
chr1.1 mRNA 51648734 51650182 51648734 ID=MS.gene89580.t1;Parent=MS.gene89580
chr1.1 exon 51648734 51650182 51648734 ID=MS.gene89580.t1.exon1;Parent=MS.gene89580.t1
chr1.1 CDS 51648734 51650182 51648734 ID=cds.MS.gene89580.t1;Parent=MS.gene89580.t1
Gene Sequence

>MS.gene89580

ATGATGAAAGTAGGATTTGAAGTCCTTCATGCAAATCCAAACATGATTCATCCACACATGCATGAAACATGGGACTATACAATCATTGCAAATGACTTATTATTGCCACCTCCAATCCAAACAAATCCTTATCCAAAACCACCAACAGAAAATCACTCCCTAAACTTGGGAGGACAGAATAATGAGGTGAGTGATTGGGTTGAACACATTACTAAACACTTTGTTGAAGATCAATTACCACAAAACACTTCTGATAATAATAGTTACAATAATCTTCAACAAATTCAAACAAACACCTCAGATTTATTTCAAAACCATAATAGTAATAGTGGTTATGAATGTGATCAAGGGTTGAATTTGATAACCCTTCTAATGGAATGTGCAGTGGCAATTTCAGTTGAAAATCATGGTGAGGCTCATAGAATGTTACTAGAGTTAACACAATTAGCTTCACCTTACAAAACATCATGTGCTGAACGTGTTGTTGCTTATTTTGCAAAAGCTATGATTAGTAGAGTGATGAATACATGGCTTGGAGCATGTTCTCCTTTGATTGATCATAGAACCATTCATTCTTCTCTACAAGTGTTCAACAATATTTCCCCTTTCATCAAATTTTCACATTTCACTTCAAACCAAGCAATTCTCGAAGCCGTGAACCGTTGTAATAGCATTCATATCATTGATTTGGATATCATGCAAGGGCTTCAATGGCCTGCTTTTTTTCACATACTCGCGACTCGAATGGAGGGTCGGCCTTCAGTTCGAATGACCGGGATGGGAGCATCGATGGAACTTCTTGTTGAGACGGGGAAAAATCTTTCGAATTTTGCAAGAAGGCTCGGTTTGTGTTTAGAGTTTTACCCTATAGCATGTAAATTTGGTGAAGTTGTTGATGTTTCCATGTTACAAATTAGGCCTAATGAGACACTTGCAGTTCATTGGTTGCAACATTCTTTGTATGATTCAACTGGACCTGATTGGAAAACTTTGAGACTTCTTGAAGAATTGGAACCAAAAATCATAACTTTGGTAGAACAAGATGTTAACATTGGAGGGTCATTTTTGGACCGTTTTGTTGGTTCATTGCATTACTATTCCACCCTTTTTGATTCACTTGGATCATATTTGCATAGTGATGATTCTAACAGGAACATTGTTGAACATGGTCTTCTATCTAAAGAGATCAACAATATATTAGCAATTGGTGGACCTAAGAGAAGTGGTGAAGAAAAGTTTAGGCTTTGGAGAAGTGAACTTGTTGCAAGAAATAGTTTTGAGCAGGTTCCAATGAGTGCTAATTCAATGGCTCAAGCACAGTTGATATTGAACATGTATTCACCAGCTCATGGTTATAGTCTTGCTCAAGTTGATGGCATGTTAAGGCTTGGTTGGAAAGATACTAGTTTGTATACTGCTTCTTCTTGGACTTGTAGAACTTCTAGGTAG
Protein sequence

>MS.gene89580.t1

MMKVGFEVLHANPNMIHPHMHETWDYTIIANDLLLPPPIQTNPYPKPPTENHSLNLGGQNNEVSDWVEHITKHFVEDQLPQNTSDNNSYNNLQQIQTNTSDLFQNHNSNSGYECDQGLNLITLLMECAVAISVENHGEAHRMLLELTQLASPYKTSCAERVVAYFAKAMISRVMNTWLGACSPLIDHRTIHSSLQVFNNISPFIKFSHFTSNQAILEAVNRCNSIHIIDLDIMQGLQWPAFFHILATRMEGRPSVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDVSMLQIRPNETLAVHWLQHSLYDSTGPDWKTLRLLEELEPKIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDSNRNIVEHGLLSKEINNILAIGGPKRSGEEKFRLWRSELVARNSFEQVPMSANSMAQAQLILNMYSPAHGYSLAQVDGMLRLGWKDTSLYTASSWTCRTSR