AlfalfaGEDB | MS.gene89580

M. sativa cultivar XinJiangDaYe / MS.gene89580

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89580.t1	XP_013468460.2	94.4	482	27	0	1	482	1	482	4.30E-263	916.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89580.t1	Q9M384	51.6	395	178	6	95	480	263	653	7.5e-107	389.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89580.t1	A0A396JRA5	94.4	482	27	0	1	482	1	482	3.1e-263	916.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene89580.t1	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89580.t1	MTR_1g069725	98.504	468	7	0	15	482	1	468	0.0	961
MS.gene89580.t1	MTR_7g074650	53.803	355	156	5	126	476	441	791	3.59e-127	389
MS.gene89580.t1	MTR_4g076020	47.486	358	165	6	126	476	87	428	1.30e-105	322
MS.gene89580.t1	MTR_7g027190	34.359	390	227	9	113	478	290	674	2.01e-63	218
MS.gene89580.t1	MTR_3g065980	33.850	387	220	9	115	476	164	539	6.73e-60	206
MS.gene89580.t1	MTR_4g102790	35.696	381	223	10	116	477	285	662	1.41e-57	202
MS.gene89580.t1	MTR_4g077760	33.246	382	213	11	120	476	190	554	6.91e-49	176
MS.gene89580.t1	MTR_2g082090	30.787	432	261	14	68	476	162	578	1.11e-48	176
MS.gene89580.t1	MTR_5g058860	32.587	402	241	10	105	478	99	498	1.74e-47	171
MS.gene89580.t1	MTR_3g072710	31.910	398	233	12	116	481	113	504	1.11e-46	169

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89580.t1	AT3G54220	51.646	395	178	6	95	480	263	653	1.83e-129	390
MS.gene89580.t1	AT5G41920	47.453	373	179	7	117	479	37	402	2.08e-112	338
MS.gene89580.t1	AT1G14920	34.218	377	229	11	115	480	164	532	7.13e-58	200
MS.gene89580.t1	AT2G01570	34.392	378	229	10	115	481	216	585	4.48e-57	199
MS.gene89580.t1	AT1G66350	34.595	370	223	9	115	476	147	505	1.72e-56	196
MS.gene89580.t1	AT3G03450	33.600	375	231	11	115	476	175	544	2.26e-56	196
MS.gene89580.t1	AT5G17490	33.602	372	229	12	115	476	152	515	7.84e-53	186
MS.gene89580.t1	AT5G66770	33.690	374	224	13	120	476	217	583	3.76e-51	183
MS.gene89580.t1	AT1G63100	33.075	387	232	11	116	477	245	629	8.84e-51	183
MS.gene89580.t1	AT1G63100	33.075	387	232	11	116	477	270	654	1.60e-50	182

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Find 87 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGAAAATTTGATGAA+AGG	0.571299	1.1:+51649557	None:intergenic
AACAAGATGTTAACATTGGA+GGG	0.567098	1.1:-51649124	MS.gene89580:CDS
AACAATATATTAGCAATTGG+TGG	0.529310	1.1:-51648972	MS.gene89580:CDS
AACAGGAACATTGTTGAACA+TGG	0.588599	1.1:-51649014	MS.gene89580:CDS
AACATGTATTCACCAGCTCA+TGG	0.559958	1.1:-51648831	MS.gene89580:CDS
AATCACTCCCTAAACTTGGG+AGG	0.649390	1.1:-51650010	MS.gene89580:CDS
AATGCAATGAACCAACAAAA+CGG	0.577957	1.1:+51649090	None:intergenic
AATGCTATTACAACGGTTCA+CGG	0.473963	1.1:+51649508	None:intergenic
AATGTGAAAATTTGATGAAA+GGG	0.441329	1.1:+51649558	None:intergenic
AGAAAATCACTCCCTAAACT+TGG	0.459534	1.1:-51650014	MS.gene89580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGATGTTAACATTGGA+GGG	-	chr1.1:51649770-51649789	MS.gene89580:CDS	30.0%
AATGCAATGAACCAACAAAA+CGG	+	chr1.1:51649807-51649826	None:intergenic	30.0%
ATGATCCAAGTGAATCAAAA+AGG	+	chr1.1:51649840-51649859	None:intergenic	30.0%
CACCAAATTTACATGCTATA+GGG	+	chr1.1:51649600-51649619	None:intergenic	30.0%
CATTCTTTGTATGATTCAAC+TGG	-	chr1.1:51649685-51649704	MS.gene89580:CDS	30.0%
GCAATTTCAGTTGAAAATCA+TGG	-	chr1.1:51649121-51649140	MS.gene89580:CDS	30.0%
GGAACCAAAAATCATAACTT+TGG	-	chr1.1:51649744-51649763	MS.gene89580:CDS	30.0%
GTAGAACAAGATGTTAACAT+TGG	-	chr1.1:51649766-51649785	MS.gene89580:CDS	30.0%
TACCCTATAGCATGTAAATT+TGG	-	chr1.1:51649595-51649614	MS.gene89580:CDS	30.0%
TCACCAAATTTACATGCTAT+AGG	+	chr1.1:51649601-51649620	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	51648734	51650182	51648734	ID=MS.gene89580
chr1.1	mRNA	51648734	51650182	51648734	ID=MS.gene89580.t1;Parent=MS.gene89580
chr1.1	exon	51648734	51650182	51648734	ID=MS.gene89580.t1.exon1;Parent=MS.gene89580.t1
chr1.1	CDS	51648734	51650182	51648734	ID=cds.MS.gene89580.t1;Parent=MS.gene89580.t1

Gene Sequence

>MS.gene89580

ATGATGAAAGTAGGATTTGAAGTCCTTCATGCAAATCCAAACATGATTCATCCACACATGCATGAAACATGGGACTATACAATCATTGCAAATGACTTATTATTGCCACCTCCAATCCAAACAAATCCTTATCCAAAACCACCAACAGAAAATCACTCCCTAAACTTGGGAGGACAGAATAATGAGGTGAGTGATTGGGTTGAACACATTACTAAACACTTTGTTGAAGATCAATTACCACAAAACACTTCTGATAATAATAGTTACAATAATCTTCAACAAATTCAAACAAACACCTCAGATTTATTTCAAAACCATAATAGTAATAGTGGTTATGAATGTGATCAAGGGTTGAATTTGATAACCCTTCTAATGGAATGTGCAGTGGCAATTTCAGTTGAAAATCATGGTGAGGCTCATAGAATGTTACTAGAGTTAACACAATTAGCTTCACCTTACAAAACATCATGTGCTGAACGTGTTGTTGCTTATTTTGCAAAAGCTATGATTAGTAGAGTGATGAATACATGGCTTGGAGCATGTTCTCCTTTGATTGATCATAGAACCATTCATTCTTCTCTACAAGTGTTCAACAATATTTCCCCTTTCATCAAATTTTCACATTTCACTTCAAACCAAGCAATTCTCGAAGCCGTGAACCGTTGTAATAGCATTCATATCATTGATTTGGATATCATGCAAGGGCTTCAATGGCCTGCTTTTTTTCACATACTCGCGACTCGAATGGAGGGTCGGCCTTCAGTTCGAATGACCGGGATGGGAGCATCGATGGAACTTCTTGTTGAGACGGGGAAAAATCTTTCGAATTTTGCAAGAAGGCTCGGTTTGTGTTTAGAGTTTTACCCTATAGCATGTAAATTTGGTGAAGTTGTTGATGTTTCCATGTTACAAATTAGGCCTAATGAGACACTTGCAGTTCATTGGTTGCAACATTCTTTGTATGATTCAACTGGACCTGATTGGAAAACTTTGAGACTTCTTGAAGAATTGGAACCAAAAATCATAACTTTGGTAGAACAAGATGTTAACATTGGAGGGTCATTTTTGGACCGTTTTGTTGGTTCATTGCATTACTATTCCACCCTTTTTGATTCACTTGGATCATATTTGCATAGTGATGATTCTAACAGGAACATTGTTGAACATGGTCTTCTATCTAAAGAGATCAACAATATATTAGCAATTGGTGGACCTAAGAGAAGTGGTGAAGAAAAGTTTAGGCTTTGGAGAAGTGAACTTGTTGCAAGAAATAGTTTTGAGCAGGTTCCAATGAGTGCTAATTCAATGGCTCAAGCACAGTTGATATTGAACATGTATTCACCAGCTCATGGTTATAGTCTTGCTCAAGTTGATGGCATGTTAAGGCTTGGTTGGAAAGATACTAGTTTGTATACTGCTTCTTCTTGGACTTGTAGAACTTCTAGGTAG

Protein sequence

>MS.gene89580.t1

MMKVGFEVLHANPNMIHPHMHETWDYTIIANDLLLPPPIQTNPYPKPPTENHSLNLGGQNNEVSDWVEHITKHFVEDQLPQNTSDNNSYNNLQQIQTNTSDLFQNHNSNSGYECDQGLNLITLLMECAVAISVENHGEAHRMLLELTQLASPYKTSCAERVVAYFAKAMISRVMNTWLGACSPLIDHRTIHSSLQVFNNISPFIKFSHFTSNQAILEAVNRCNSIHIIDLDIMQGLQWPAFFHILATRMEGRPSVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDVSMLQIRPNETLAVHWLQHSLYDSTGPDWKTLRLLEELEPKIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDSNRNIVEHGLLSKEINNILAIGGPKRSGEEKFRLWRSELVARNSFEQVPMSANSMAQAQLILNMYSPAHGYSLAQVDGMLRLGWKDTSLYTASSWTCRTSR