Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89624.t1 | XP_013446370.1 | 93.2 | 339 | 15 | 2 | 1 | 339 | 1 | 331 | 2.20E-136 | 495.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89624.t1 | Q9XGX0 | 43.2 | 373 | 136 | 14 | 1 | 339 | 1 | 331 | 1.1e-48 | 195.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89624.t1 | A0A072TSM8 | 93.2 | 339 | 15 | 2 | 1 | 339 | 1 | 331 | 1.6e-136 | 495.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene89624.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89624.t1 | MTR_8g076620 | 95.280 | 339 | 8 | 2 | 1 | 339 | 1 | 331 | 0.0 | 664 |
| MS.gene89624.t1 | MTR_5g021130 | 50.959 | 365 | 111 | 13 | 1 | 339 | 1 | 323 | 2.08e-88 | 268 |
| MS.gene89624.t1 | MTR_3g112510 | 43.353 | 346 | 126 | 15 | 1 | 334 | 1 | 288 | 3.54e-63 | 202 |
| MS.gene89624.t1 | MTR_5g089750 | 49.677 | 155 | 55 | 4 | 129 | 260 | 249 | 403 | 1.21e-40 | 148 |
| MS.gene89624.t1 | MTR_4g071110 | 47.887 | 142 | 65 | 2 | 125 | 266 | 13 | 145 | 8.39e-39 | 139 |
| MS.gene89624.t1 | MTR_3g014660 | 41.558 | 154 | 65 | 3 | 129 | 258 | 134 | 286 | 1.40e-33 | 126 |
| MS.gene89624.t1 | MTR_8g039110 | 39.884 | 173 | 73 | 3 | 116 | 258 | 111 | 282 | 5.71e-33 | 125 |
| MS.gene89624.t1 | MTR_1g023230 | 55.455 | 110 | 33 | 2 | 127 | 220 | 120 | 229 | 3.01e-27 | 107 |
| MS.gene89624.t1 | MTR_0363s0040 | 77.778 | 45 | 10 | 0 | 129 | 173 | 124 | 168 | 5.36e-20 | 88.2 |
| MS.gene89624.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 131 | 163 | 44 | 76 | 6.32e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89624.t1 | AT3G51060 | 43.766 | 393 | 144 | 10 | 1 | 339 | 1 | 370 | 1.07e-79 | 248 |
| MS.gene89624.t1 | AT5G66350 | 43.164 | 373 | 136 | 13 | 1 | 339 | 1 | 331 | 6.55e-74 | 231 |
| MS.gene89624.t1 | AT5G66350 | 42.818 | 362 | 133 | 12 | 1 | 328 | 1 | 322 | 1.17e-71 | 226 |
| MS.gene89624.t1 | AT5G66350 | 42.936 | 361 | 132 | 12 | 1 | 327 | 1 | 321 | 1.51e-71 | 226 |
| MS.gene89624.t1 | AT1G19790 | 41.600 | 375 | 151 | 14 | 1 | 338 | 1 | 344 | 4.81e-69 | 219 |
| MS.gene89624.t1 | AT1G19790 | 41.600 | 375 | 151 | 14 | 1 | 338 | 1 | 344 | 4.81e-69 | 219 |
| MS.gene89624.t1 | AT1G75520 | 41.270 | 378 | 151 | 15 | 1 | 339 | 1 | 346 | 1.31e-62 | 203 |
| MS.gene89624.t1 | AT4G36260 | 41.160 | 362 | 145 | 13 | 1 | 337 | 1 | 319 | 1.15e-54 | 182 |
| MS.gene89624.t1 | AT2G21400 | 48.555 | 173 | 83 | 3 | 126 | 295 | 7 | 176 | 2.90e-49 | 163 |
| MS.gene89624.t1 | AT2G21400 | 48.555 | 173 | 83 | 3 | 126 | 295 | 6 | 175 | 3.34e-49 | 163 |
| MS.gene89624.t1 | AT2G21400 | 47.059 | 170 | 75 | 2 | 126 | 295 | 7 | 161 | 2.66e-48 | 160 |
| MS.gene89624.t1 | AT2G21400 | 47.059 | 170 | 75 | 2 | 126 | 295 | 6 | 160 | 3.06e-48 | 160 |
| MS.gene89624.t1 | AT2G18120 | 52.258 | 155 | 59 | 3 | 118 | 263 | 61 | 209 | 1.80e-46 | 157 |
| MS.gene89624.t1 | AT2G18120 | 50.980 | 153 | 62 | 2 | 118 | 263 | 61 | 207 | 8.70e-46 | 155 |
| MS.gene89624.t1 | AT5G12330 | 47.826 | 161 | 54 | 5 | 129 | 260 | 112 | 271 | 4.93e-38 | 138 |
| MS.gene89624.t1 | AT5G12330 | 47.826 | 161 | 54 | 5 | 129 | 260 | 112 | 271 | 4.93e-38 | 138 |
| MS.gene89624.t1 | AT5G12330 | 47.826 | 161 | 54 | 5 | 129 | 260 | 199 | 358 | 8.98e-38 | 139 |
| MS.gene89624.t1 | AT5G33210 | 41.772 | 158 | 71 | 5 | 95 | 237 | 14 | 165 | 5.59e-29 | 110 |
| MS.gene89624.t1 | AT5G33210 | 61.176 | 85 | 23 | 2 | 127 | 201 | 15 | 99 | 4.24e-27 | 103 |
| MS.gene89624.t1 | AT3G54430 | 40.385 | 156 | 70 | 7 | 114 | 258 | 27 | 170 | 3.85e-26 | 103 |
| MS.gene89624.t1 | AT5G12330 | 82.609 | 46 | 8 | 0 | 129 | 174 | 112 | 157 | 3.77e-21 | 90.9 |
Find 85 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTGTTGGTACTACTTTC+TGG | 0.121760 | 8.3:+27466805 | None:intergenic |
| AAAGGAATTCTCTATGATTT+TGG | 0.200894 | 8.3:-27466829 | MS.gene89624:CDS |
| ACAGAGGTAATTTAGAATTA+TGG | 0.238498 | 8.3:-27468155 | MS.gene89624:CDS |
| CACCACAAGAGACACTATTT+TGG | 0.271662 | 8.3:-27468209 | MS.gene89624:CDS |
| TGATCCTTCTTCATTGTATT+CGG | 0.283339 | 8.3:-27466644 | MS.gene89624:CDS |
| AATAATAGTAATTACATGAT+TGG | 0.330195 | 8.3:-27466763 | MS.gene89624:CDS |
| ATAATAGTAATTACATGATT+GGG | 0.347728 | 8.3:-27466762 | MS.gene89624:CDS |
| GTTGCTGGTGGTGGTGTTGT+TGG | 0.369529 | 8.3:+27468109 | None:intergenic |
| GTTGTTGGTGTTGTTGTTGT+TGG | 0.378649 | 8.3:+27468124 | None:intergenic |
| ATGGCTGGTTTGTTCTCATT+AGG | 0.380675 | 8.3:-27468285 | MS.gene89624:CDS |
| TAAGCTCACCAGCGGAGTTC+AGG | 0.381652 | 8.3:-27466933 | MS.gene89624:CDS |
| CAGCGGAGTTCAGGTGTGTA+AGG | 0.390315 | 8.3:-27466924 | MS.gene89624:CDS |
| GTTGTTGTGATTCTTCTCCT+TGG | 0.392328 | 8.3:+27468244 | None:intergenic |
| TACATGATTGGGGAGACTTC+CGG | 0.393571 | 8.3:-27466751 | MS.gene89624:CDS |
| ATAACTGTTGTTGACGTTCA+CGG | 0.415997 | 8.3:+27467776 | None:intergenic |
| TACGGTCCAGGAGTTGGTTT+AGG | 0.417465 | 8.3:-27468033 | MS.gene89624:CDS |
| ACTATTGTTGCTGTTATTGT+TGG | 0.418687 | 8.3:+27466792 | None:intergenic |
| GGTGTTGTTGTTGTTGGTGT+TGG | 0.421652 | 8.3:+27468130 | None:intergenic |
| CCAGGAGTTGGTTTAGGTGT+TGG | 0.426741 | 8.3:-27468027 | MS.gene89624:CDS |
| GTTTAGGTGTTGGACCAAGC+AGG | 0.429835 | 8.3:-27468017 | MS.gene89624:CDS |
| TGGTATCAGAGTCGGTGATT+AGG | 0.442544 | 8.3:+27466695 | None:intergenic |
| GCCGTCATGAAGGCATTAAT+CGG | 0.448399 | 8.3:+27466619 | None:intergenic |
| ACTTCCGGTGGAGGCGGTGT+TGG | 0.448651 | 8.3:-27466736 | MS.gene89624:CDS |
| GTTGTTGTTGTTGCTGGTGG+TGG | 0.455548 | 8.3:+27468100 | None:intergenic |
| TACCACTGTTGTTACCTCCT+CGG | 0.458381 | 8.3:-27466677 | MS.gene89624:CDS |
| ATTGGGGAGACTTCCGGTGG+AGG | 0.461874 | 8.3:-27466745 | MS.gene89624:CDS |
| GAGGACAATCTTTCTTAGCT+TGG | 0.464592 | 8.3:+27467884 | None:intergenic |
| TTCTTCTTCAAAGAAATGGC+TGG | 0.464677 | 8.3:-27468300 | None:intergenic |
| TTGTTCTCATTAGGAGGTGG+TGG | 0.466253 | 8.3:-27468276 | MS.gene89624:CDS |
| TTTGAAATATCTCTTTGTAA+AGG | 0.469835 | 8.3:+27467745 | None:intergenic |
| GGGGAGACTTCCGGTGGAGG+CGG | 0.470323 | 8.3:-27466742 | MS.gene89624:CDS |
| GAGATCGGCAGCGTTTACTA+TGG | 0.472056 | 8.3:-27467959 | MS.gene89624:CDS |
| ACCACTGTTGTTACCTCCTC+GGG | 0.476598 | 8.3:-27466676 | MS.gene89624:CDS |
| AGCGCCAACACCGCCTCCAC+CGG | 0.479358 | 8.3:+27466732 | None:intergenic |
| TCATTAGGAGGTGGTGGAAG+AGG | 0.483659 | 8.3:-27468270 | MS.gene89624:CDS |
| CAATTGATGATGCAGATGAT+AGG | 0.486383 | 8.3:-27466894 | MS.gene89624:CDS |
| AAACTCATGTTAAAAGCACT+TGG | 0.502171 | 8.3:-27467816 | MS.gene89624:CDS |
| ACATCAATCGTCGTCGAGAT+CGG | 0.503948 | 8.3:-27467974 | MS.gene89624:CDS |
| GGTTTGTTCTCATTAGGAGG+TGG | 0.504419 | 8.3:-27468279 | MS.gene89624:CDS |
| GCTGGTGAGCTTACCACAGC+AGG | 0.505962 | 8.3:+27466943 | None:intergenic |
| CGTTCACGGCGTCTAGAAGC+AGG | 0.507852 | 8.3:+27467790 | None:intergenic |
| GATCTCTACGGTCCAGGAGT+TGG | 0.516227 | 8.3:-27468039 | MS.gene89624:CDS |
| GCTGGTTTGTTCTCATTAGG+AGG | 0.517479 | 8.3:-27468282 | MS.gene89624:CDS |
| ATTGGAGGACATTTGTTCAA+AGG | 0.517913 | 8.3:-27466847 | MS.gene89624:CDS |
| CCGCGAGATCTCTACGGTCC+AGG | 0.520475 | 8.3:-27468045 | MS.gene89624:CDS |
| AGAGCATTTGAACCATCTCT+AGG | 0.524317 | 8.3:+27467718 | None:intergenic |
| TTTAGGTGTTGGACCAAGCA+GGG | 0.533902 | 8.3:-27468016 | MS.gene89624:CDS |
| AGGTCTTCTACTTCAGCTGA+AGG | 0.535426 | 8.3:-27467931 | MS.gene89624:CDS |
| TTCTTTCCGCGAGATCTCTA+CGG | 0.539130 | 8.3:-27468051 | MS.gene89624:CDS |
| CATTAGGAGGTGGTGGAAGA+GGG | 0.546315 | 8.3:-27468269 | MS.gene89624:CDS |
| GGGATAAGTTGTCAAGATTG+TGG | 0.548229 | 8.3:-27467910 | MS.gene89624:CDS |
| GGTGGTGGAAGAGGGAACCA+AGG | 0.550985 | 8.3:-27468261 | MS.gene89624:CDS |
| CCAACACCTAAACCAACTCC+TGG | 0.554565 | 8.3:+27468027 | None:intergenic |
| CAAAATAGTGTCTCTTGTGG+TGG | 0.555466 | 8.3:+27468210 | None:intergenic |
| TATCAAACGGCTGTTAACAT+TGG | 0.556930 | 8.3:-27466865 | MS.gene89624:CDS |
| TGATAGGTATGCATATCAAA+CGG | 0.559733 | 8.3:-27466878 | MS.gene89624:CDS |
| CAAACGGCTGTTAACATTGG+AGG | 0.566332 | 8.3:-27466862 | MS.gene89624:CDS |
| TAGAGATCTCGCGGAAAGAA+CGG | 0.567226 | 8.3:+27468054 | None:intergenic |
| CGTACCACTAGCCGTCATGA+AGG | 0.569674 | 8.3:+27466609 | None:intergenic |
| ATTTCAAAACGCCCTAGAGA+TGG | 0.570524 | 8.3:-27467730 | MS.gene89624:CDS |
| TCATCTGATGAAACCCTGCT+TGG | 0.577114 | 8.3:+27468003 | None:intergenic |
| AACTCATGTTAAAAGCACTT+GGG | 0.578823 | 8.3:-27467815 | MS.gene89624:CDS |
| CTTACACACCTGAACTCCGC+TGG | 0.583863 | 8.3:+27466925 | None:intergenic |
| TAATAGTAATTACATGATTG+GGG | 0.584644 | 8.3:-27466761 | MS.gene89624:CDS |
| GAGCATTTGAACCATCTCTA+GGG | 0.600057 | 8.3:+27467719 | None:intergenic |
| AGCGGAGTTCAGGTGTGTAA+GGG | 0.600996 | 8.3:-27466923 | MS.gene89624:CDS |
| AGGATCAACAAGTGCGCCCG+AGG | 0.604938 | 8.3:+27466660 | None:intergenic |
| GGAGCCGAATACAATGAAGA+AGG | 0.606433 | 8.3:+27466640 | None:intergenic |
| GAGTCGGTGATTAGGTTCAA+CGG | 0.611827 | 8.3:+27466703 | None:intergenic |
| AATGCCTTCATGACGGCTAG+TGG | 0.616126 | 8.3:-27466613 | MS.gene89624:CDS |
| AACAACAGTGGTATCAGAGT+CGG | 0.622301 | 8.3:+27466687 | None:intergenic |
| AGAACTTGTTGTAAGAGTCG+TGG | 0.626794 | 8.3:-27467850 | MS.gene89624:CDS |
| ATCAACAAGTGCGCCCGAGG+AGG | 0.628386 | 8.3:+27466663 | None:intergenic |
| TCCGATTAATGCCTTCATGA+CGG | 0.631102 | 8.3:-27466620 | MS.gene89624:CDS |
| GGTCTTCTACTTCAGCTGAA+GGG | 0.636893 | 8.3:-27467930 | MS.gene89624:CDS |
| TGCTGTGGTAAGCTCACCAG+CGG | 0.638941 | 8.3:-27466941 | MS.gene89624:CDS |
| GATGTTTCATCTTACAACAG+AGG | 0.641152 | 8.3:-27468171 | MS.gene89624:CDS |
| CAGCGTTTACTATGGCTATG+AGG | 0.650670 | 8.3:-27467951 | MS.gene89624:CDS |
| TACCAAAATAGTGTCTCTTG+TGG | 0.654055 | 8.3:+27468207 | None:intergenic |
| ATGATTGGGGAGACTTCCGG+TGG | 0.658081 | 8.3:-27466748 | MS.gene89624:CDS |
| AAGATGATATGCATGCTGCA+CGG | 0.670001 | 8.3:-27468077 | MS.gene89624:CDS |
| CCTGGACCGTAGAGATCTCG+CGG | 0.671044 | 8.3:+27468045 | None:intergenic |
| CAAGTTCTACATCTCATGTG+AGG | 0.701177 | 8.3:+27467865 | None:intergenic |
| GCCCGAGGAGGTAACAACAG+TGG | 0.722030 | 8.3:+27466675 | None:intergenic |
| GGAGAAGAATCACAACAACA+AGG | 0.732085 | 8.3:-27468240 | MS.gene89624:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTGTTAAAAAATAAA+GGG | - | chr8.3:27467883-27467902 | MS.gene89624:CDS | 10.0% |
| !!! | TTTGTTTTGTTAAAAAATAA+AGG | - | chr8.3:27467882-27467901 | MS.gene89624:CDS | 10.0% |
| !! | AATAATAGTAATTACATGAT+TGG | - | chr8.3:27468104-27468123 | MS.gene89624:CDS | 15.0% |
| !! | ATAATAGTAATTACATGATT+GGG | - | chr8.3:27468105-27468124 | MS.gene89624:CDS | 15.0% |
| !! | TAATAAAAAAAAAAAGCTGA+TGG | + | chr8.3:27467534-27467553 | None:intergenic | 15.0% |
| !! | TAATAGTAATTACATGATTG+GGG | - | chr8.3:27468106-27468125 | MS.gene89624:CDS | 20.0% |
| !!! | ATGTTTTTCACAAAAGAAAA+AGG | + | chr8.3:27467591-27467610 | None:intergenic | 20.0% |
| !!! | TGTTTTTCACAAAAGAAAAA+GGG | + | chr8.3:27467590-27467609 | None:intergenic | 20.0% |
| !!! | TTGCTTTTGTTTTTTAGTTA+AGG | - | chr8.3:27467233-27467252 | MS.gene89624:intron | 20.0% |
| !!! | TTTGAAATATCTCTTTGTAA+AGG | + | chr8.3:27467125-27467144 | None:intergenic | 20.0% |
| ! | AAAACTTTGTCATCAGTATT+TGG | + | chr8.3:27467430-27467449 | None:intergenic | 25.0% |
| ! | AAGAATCACAAAGAAAATGA+TGG | + | chr8.3:27467725-27467744 | None:intergenic | 25.0% |
| ! | GTTAAAAAATAAAGGGTTAG+AGG | - | chr8.3:27467890-27467909 | MS.gene89624:CDS | 25.0% |
| !! | AAAACAAAGAGAGAATCTTT+TGG | - | chr8.3:27467377-27467396 | MS.gene89624:intron | 25.0% |
| !! | AAAGGAATTCTCTATGATTT+TGG | - | chr8.3:27468038-27468057 | MS.gene89624:CDS | 25.0% |
| !! | AAATACTGATGACAAAGTTT+TGG | - | chr8.3:27467429-27467448 | MS.gene89624:intron | 25.0% |
| !! | ACAGAGGTAATTTAGAATTA+TGG | - | chr8.3:27466712-27466731 | MS.gene89624:CDS | 25.0% |
| !!! | ATTCTAGAATAATCTACACA+TGG | + | chr8.3:27467753-27467772 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTAGTTAAGGAC+TGG | - | chr8.3:27467238-27467257 | MS.gene89624:intron | 25.0% |
| AGGAAAAACAGTTTCTTTCT+TGG | + | chr8.3:27467636-27467655 | None:intergenic | 30.0% | |
| CTTAACCATAACACTGAAAA+GGG | + | chr8.3:27467328-27467347 | None:intergenic | 30.0% | |
| TCTTAACCATAACACTGAAA+AGG | + | chr8.3:27467329-27467348 | None:intergenic | 30.0% | |
| TGATAGGTATGCATATCAAA+CGG | - | chr8.3:27467989-27468008 | MS.gene89624:CDS | 30.0% | |
| TGATCCTTCTTCATTGTATT+CGG | - | chr8.3:27468223-27468242 | MS.gene89624:CDS | 30.0% | |
| TTATTGTTGGTACTACTTTC+TGG | + | chr8.3:27468065-27468084 | None:intergenic | 30.0% | |
| ! | AAGCTGATGGATATGAAATA+TGG | + | chr8.3:27467521-27467540 | None:intergenic | 30.0% |
| ! | ACTATTGTTGCTGTTATTGT+TGG | + | chr8.3:27468078-27468097 | None:intergenic | 30.0% |
| ! | TCAACTCGTAATTTTCAAAC+AGG | - | chr8.3:27467176-27467195 | MS.gene89624:intron | 30.0% |
| !! | AAACTCATGTTAAAAGCACT+TGG | - | chr8.3:27467051-27467070 | MS.gene89624:intron | 30.0% |
| !! | AACTCATGTTAAAAGCACTT+GGG | - | chr8.3:27467052-27467071 | MS.gene89624:intron | 30.0% |
| AAACAGTTTCTTTCTTGGTC+AGG | + | chr8.3:27467631-27467650 | None:intergenic | 35.0% | |
| AACAGTTTCTTTCTTGGTCA+GGG | + | chr8.3:27467630-27467649 | None:intergenic | 35.0% | |
| ATAAACACACGCAATCGATA+CGG | + | chr8.3:27467478-27467497 | None:intergenic | 35.0% | |
| ATAACTGTTGTTGACGTTCA+CGG | + | chr8.3:27467094-27467113 | None:intergenic | 35.0% | |
| ATTGGAGGACATTTGTTCAA+AGG | - | chr8.3:27468020-27468039 | MS.gene89624:CDS | 35.0% | |
| GATGTTTCATCTTACAACAG+AGG | - | chr8.3:27466696-27466715 | MS.gene89624:CDS | 35.0% | |
| TACCAAAATAGTGTCTCTTG+TGG | + | chr8.3:27466663-27466682 | None:intergenic | 35.0% | |
| TATCAAACGGCTGTTAACAT+TGG | - | chr8.3:27468002-27468021 | MS.gene89624:CDS | 35.0% | |
| ! | ATTGACCCTTTTCAGTGTTA+TGG | - | chr8.3:27467320-27467339 | MS.gene89624:intron | 35.0% |
| ! | CTGATGGATATGAAATATGG+TGG | + | chr8.3:27467518-27467537 | None:intergenic | 35.0% |
| ! | TGCATTCTGTTGTGTTGTTA+AGG | - | chr8.3:27467805-27467824 | MS.gene89624:CDS | 35.0% |
| !! | CAATTGATGATGCAGATGAT+AGG | - | chr8.3:27467973-27467992 | MS.gene89624:CDS | 35.0% |
| !!! | GAGAGAATCTTTTGGTTTAG+AGG | - | chr8.3:27467385-27467404 | MS.gene89624:intron | 35.0% |
| AACAACAGTGGTATCAGAGT+CGG | + | chr8.3:27468183-27468202 | None:intergenic | 40.0% | |
| AAGATGATATGCATGCTGCA+CGG | - | chr8.3:27466790-27466809 | MS.gene89624:CDS | 40.0% | |
| ACACTGAAAAGGGTCAATCA+CGG | + | chr8.3:27467318-27467337 | None:intergenic | 40.0% | |
| ATGATGGTAGCTAGTGATTG+AGG | + | chr8.3:27467709-27467728 | None:intergenic | 40.0% | |
| ATTTCAAAACGCCCTAGAGA+TGG | - | chr8.3:27467137-27467156 | MS.gene89624:intron | 40.0% | |
| CAAAATAGTGTCTCTTGTGG+TGG | + | chr8.3:27466660-27466679 | None:intergenic | 40.0% | |
| CAAGTTCTACATCTCATGTG+AGG | + | chr8.3:27467005-27467024 | None:intergenic | 40.0% | |
| GAGAGTGAGTGGTGAAATAA+AGG | - | chr8.3:27467347-27467366 | MS.gene89624:intron | 40.0% | |
| GAGCATTTGAACCATCTCTA+GGG | + | chr8.3:27467151-27467170 | None:intergenic | 40.0% | |
| GAGGACAATCTTTCTTAGCT+TGG | + | chr8.3:27466986-27467005 | None:intergenic | 40.0% | |
| GATTGAGGTGAGAATATGTG+TGG | + | chr8.3:27467694-27467713 | None:intergenic | 40.0% | |
| GGAGAAGAATCACAACAACA+AGG | - | chr8.3:27466627-27466646 | MS.gene89624:CDS | 40.0% | |
| GGGATAAGTTGTCAAGATTG+TGG | - | chr8.3:27466957-27466976 | MS.gene89624:CDS | 40.0% | |
| GTACTGTGACATAAGGTGTA+AGG | - | chr8.3:27467265-27467284 | MS.gene89624:intron | 40.0% | |
| GTTATGGTTAAGAGAGTGAG+TGG | - | chr8.3:27467336-27467355 | MS.gene89624:intron | 40.0% | |
| GTTGTTGTGATTCTTCTCCT+TGG | + | chr8.3:27466626-27466645 | None:intergenic | 40.0% | |
| TCCGATTAATGCCTTCATGA+CGG | - | chr8.3:27468247-27468266 | MS.gene89624:CDS | 40.0% | |
| TGGACTTGTACTGTGACATA+AGG | - | chr8.3:27467258-27467277 | MS.gene89624:intron | 40.0% | |
| ! | AGAGCATTTGAACCATCTCT+AGG | + | chr8.3:27467152-27467171 | None:intergenic | 40.0% |
| ! | CACCACAAGAGACACTATTT+TGG | - | chr8.3:27466658-27466677 | MS.gene89624:CDS | 40.0% |
| !! | AGAACTTGTTGTAAGAGTCG+TGG | - | chr8.3:27467017-27467036 | MS.gene89624:intron | 40.0% |
| !! | ATGGCTGGTTTGTTCTCATT+AGG | - | chr8.3:27466582-27466601 | MS.gene89624:CDS | 40.0% |
| !! | CATCTTGTTGTTGTTGTTGC+TGG | + | chr8.3:27466776-27466795 | None:intergenic | 40.0% |
| !! | GTTGTTGGTGTTGTTGTTGT+TGG | + | chr8.3:27466746-27466765 | None:intergenic | 40.0% |
| ACATCAATCGTCGTCGAGAT+CGG | - | chr8.3:27466893-27466912 | MS.gene89624:CDS | 45.0% | |
| AGGTCTTCTACTTCAGCTGA+AGG | - | chr8.3:27466936-27466955 | MS.gene89624:CDS | 45.0% | |
| CAAACGGCTGTTAACATTGG+AGG | - | chr8.3:27468005-27468024 | MS.gene89624:CDS | 45.0% | |
| CAGCGTTTACTATGGCTATG+AGG | - | chr8.3:27466916-27466935 | MS.gene89624:CDS | 45.0% | |
| GAGGGAATGTGCTAAGAAAG+AGG | + | chr8.3:27467659-27467678 | None:intergenic | 45.0% | |
| GAGTCGGTGATTAGGTTCAA+CGG | + | chr8.3:27468167-27468186 | None:intergenic | 45.0% | |
| GGAATGTGCTAAGAAAGAGG+AGG | + | chr8.3:27467656-27467675 | None:intergenic | 45.0% | |
| GGAGCCGAATACAATGAAGA+AGG | + | chr8.3:27468230-27468249 | None:intergenic | 45.0% | |
| GGTCTTCTACTTCAGCTGAA+GGG | - | chr8.3:27466937-27466956 | MS.gene89624:CDS | 45.0% | |
| GTGTGGATGTGAAAGAGAGA+GGG | + | chr8.3:27467677-27467696 | None:intergenic | 45.0% | |
| TACATGATTGGGGAGACTTC+CGG | - | chr8.3:27468116-27468135 | MS.gene89624:CDS | 45.0% | |
| TACCACTGTTGTTACCTCCT+CGG | - | chr8.3:27468190-27468209 | MS.gene89624:CDS | 45.0% | |
| TAGAGATCTCGCGGAAAGAA+CGG | + | chr8.3:27466816-27466835 | None:intergenic | 45.0% | |
| TCATCTGATGAAACCCTGCT+TGG | + | chr8.3:27466867-27466886 | None:intergenic | 45.0% | |
| TGGTATCAGAGTCGGTGATT+AGG | + | chr8.3:27468175-27468194 | None:intergenic | 45.0% | |
| TGTGTGGATGTGAAAGAGAG+AGG | + | chr8.3:27467678-27467697 | None:intergenic | 45.0% | |
| TTCTTTCCGCGAGATCTCTA+CGG | - | chr8.3:27466816-27466835 | MS.gene89624:CDS | 45.0% | |
| TTGTTCTCATTAGGAGGTGG+TGG | - | chr8.3:27466591-27466610 | MS.gene89624:CDS | 45.0% | |
| ! | GGAAGCAAATTTTCCTGCTG+TGG | - | chr8.3:27467911-27467930 | MS.gene89624:CDS | 45.0% |
| ! | GGTTTGTTCTCATTAGGAGG+TGG | - | chr8.3:27466588-27466607 | MS.gene89624:CDS | 45.0% |
| !! | CTTGTTGTTGTTGTTGCTGG+TGG | + | chr8.3:27466773-27466792 | None:intergenic | 45.0% |
| !! | GCCGTCATGAAGGCATTAAT+CGG | + | chr8.3:27468251-27468270 | None:intergenic | 45.0% |
| !! | GCTGGTTTGTTCTCATTAGG+AGG | - | chr8.3:27466585-27466604 | MS.gene89624:CDS | 45.0% |
| !! | GGTGTTGTTGTTGTTGGTGT+TGG | + | chr8.3:27466740-27466759 | None:intergenic | 45.0% |
| !! | TTTAGGTGTTGGACCAAGCA+GGG | - | chr8.3:27466851-27466870 | MS.gene89624:CDS | 45.0% |
| AATGCCTTCATGACGGCTAG+TGG | - | chr8.3:27468254-27468273 | MS.gene89624:CDS | 50.0% | |
| ACACACGCAATCGATACGGT+TGG | + | chr8.3:27467474-27467493 | None:intergenic | 50.0% | |
| ACCACTGTTGTTACCTCCTC+GGG | - | chr8.3:27468191-27468210 | MS.gene89624:CDS | 50.0% | |
| AGCGGAGTTCAGGTGTGTAA+GGG | - | chr8.3:27467944-27467963 | MS.gene89624:CDS | 50.0% | |
| CCAACACCTAAACCAACTCC+TGG | + | chr8.3:27466843-27466862 | None:intergenic | 50.0% | |
| GAGATCGGCAGCGTTTACTA+TGG | - | chr8.3:27466908-27466927 | MS.gene89624:CDS | 50.0% | |
| ! | CCAGGAGTTGGTTTAGGTGT+TGG | - | chr8.3:27466840-27466859 | MS.gene89624:CDS | 50.0% |
| ! | GTTGTTGTTGTTGCTGGTGG+TGG | + | chr8.3:27466770-27466789 | None:intergenic | 50.0% |
| ! | TACGGTCCAGGAGTTGGTTT+AGG | - | chr8.3:27466834-27466853 | MS.gene89624:CDS | 50.0% |
| !! | CATTAGGAGGTGGTGGAAGA+GGG | - | chr8.3:27466598-27466617 | MS.gene89624:CDS | 50.0% |
| !! | GTTTAGGTGTTGGACCAAGC+AGG | - | chr8.3:27466850-27466869 | MS.gene89624:CDS | 50.0% |
| !! | TCATTAGGAGGTGGTGGAAG+AGG | - | chr8.3:27466597-27466616 | MS.gene89624:CDS | 50.0% |
| ATGATTGGGGAGACTTCCGG+TGG | - | chr8.3:27468119-27468138 | MS.gene89624:CDS | 55.0% | |
| CAGCGGAGTTCAGGTGTGTA+AGG | - | chr8.3:27467943-27467962 | MS.gene89624:CDS | 55.0% | |
| CGTACCACTAGCCGTCATGA+AGG | + | chr8.3:27468261-27468280 | None:intergenic | 55.0% | |
| CTTACACACCTGAACTCCGC+TGG | + | chr8.3:27467945-27467964 | None:intergenic | 55.0% | |
| GATCTCTACGGTCCAGGAGT+TGG | - | chr8.3:27466828-27466847 | MS.gene89624:CDS | 55.0% | |
| TAAGCTCACCAGCGGAGTTC+AGG | - | chr8.3:27467934-27467953 | MS.gene89624:CDS | 55.0% | |
| TGCTGTGGTAAGCTCACCAG+CGG | - | chr8.3:27467926-27467945 | MS.gene89624:CDS | 55.0% | |
| !! | GTTGCTGGTGGTGGTGTTGT+TGG | + | chr8.3:27466761-27466780 | None:intergenic | 55.0% |
| AGGATCAACAAGTGCGCCCG+AGG | + | chr8.3:27468210-27468229 | None:intergenic | 60.0% | |
| ATCAACAAGTGCGCCCGAGG+AGG | + | chr8.3:27468207-27468226 | None:intergenic | 60.0% | |
| ATTGGGGAGACTTCCGGTGG+AGG | - | chr8.3:27468122-27468141 | MS.gene89624:CDS | 60.0% | |
| CCTGGACCGTAGAGATCTCG+CGG | + | chr8.3:27466825-27466844 | None:intergenic | 60.0% | |
| CGTTCACGGCGTCTAGAAGC+AGG | + | chr8.3:27467080-27467099 | None:intergenic | 60.0% | |
| GCCCGAGGAGGTAACAACAG+TGG | + | chr8.3:27468195-27468214 | None:intergenic | 60.0% | |
| GCTGGTGAGCTTACCACAGC+AGG | + | chr8.3:27467927-27467946 | None:intergenic | 60.0% | |
| !! | GGTGGTGGAAGAGGGAACCA+AGG | - | chr8.3:27466606-27466625 | MS.gene89624:CDS | 60.0% |
| ACTTCCGGTGGAGGCGGTGT+TGG | - | chr8.3:27468131-27468150 | MS.gene89624:CDS | 65.0% | |
| CCGCGAGATCTCTACGGTCC+AGG | - | chr8.3:27466822-27466841 | MS.gene89624:CDS | 65.0% | |
| AGCGCCAACACCGCCTCCAC+CGG | + | chr8.3:27468138-27468157 | None:intergenic | 70.0% | |
| GGGGAGACTTCCGGTGGAGG+CGG | - | chr8.3:27468125-27468144 | MS.gene89624:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 27466582 | 27468307 | 27466582 | ID=MS.gene89624 |
| chr8.3 | mRNA | 27466582 | 27468307 | 27466582 | ID=MS.gene89624.t1;Parent=MS.gene89624 |
| chr8.3 | exon | 27467692 | 27468307 | 27467692 | ID=MS.gene89624.t1.exon1;Parent=MS.gene89624.t1 |
| chr8.3 | CDS | 27467692 | 27468307 | 27467692 | ID=cds.MS.gene89624.t1;Parent=MS.gene89624.t1 |
| chr8.3 | exon | 27466582 | 27466985 | 27466582 | ID=MS.gene89624.t1.exon2;Parent=MS.gene89624.t1 |
| chr8.3 | CDS | 27466582 | 27466985 | 27466582 | ID=cds.MS.gene89624.t1;Parent=MS.gene89624.t1 |
| Gene Sequence |
| Protein sequence |
