Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89633.t1 | XP_003629365.1 | 93.5 | 291 | 17 | 1 | 1 | 289 | 1 | 291 | 2.70E-143 | 518.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89633.t1 | Q9FH57 | 44.9 | 316 | 135 | 6 | 7 | 284 | 3 | 317 | 2.9e-53 | 210.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89633.t1 | G7LD10 | 93.5 | 291 | 17 | 1 | 1 | 289 | 1 | 291 | 1.9e-143 | 518.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene89633.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89633.t1 | MTR_8g076340 | 93.471 | 291 | 17 | 1 | 1 | 289 | 1 | 291 | 0.0 | 516 |
MS.gene89633.t1 | MTR_5g021340 | 45.833 | 336 | 120 | 10 | 1 | 288 | 51 | 372 | 1.82e-69 | 220 |
MS.gene89633.t1 | MTR_4g071590 | 40.132 | 304 | 137 | 9 | 1 | 284 | 1 | 279 | 1.56e-55 | 181 |
MS.gene89633.t1 | MTR_4g471590 | 40.132 | 304 | 137 | 9 | 1 | 284 | 1 | 279 | 1.56e-55 | 181 |
MS.gene89633.t1 | MTR_3g117380 | 41.901 | 284 | 133 | 9 | 25 | 289 | 35 | 305 | 4.58e-53 | 176 |
MS.gene89633.t1 | MTR_8g013950 | 40.426 | 282 | 114 | 8 | 41 | 285 | 31 | 295 | 6.09e-53 | 176 |
MS.gene89633.t1 | MTR_3g109760 | 42.308 | 260 | 134 | 5 | 40 | 286 | 21 | 277 | 8.63e-50 | 167 |
MS.gene89633.t1 | MTR_1g006650 | 40.426 | 282 | 131 | 9 | 42 | 286 | 23 | 304 | 2.20e-47 | 162 |
MS.gene89633.t1 | MTR_6g032830 | 40.541 | 222 | 80 | 7 | 111 | 280 | 35 | 256 | 3.77e-40 | 140 |
MS.gene89633.t1 | MTR_1g116010 | 40.000 | 215 | 82 | 7 | 111 | 284 | 26 | 234 | 1.25e-36 | 131 |
MS.gene89633.t1 | MTR_7g085410 | 41.284 | 218 | 82 | 6 | 105 | 280 | 39 | 252 | 2.34e-36 | 130 |
MS.gene89633.t1 | MTR_1g046680 | 52.206 | 136 | 46 | 5 | 154 | 288 | 127 | 244 | 1.42e-35 | 128 |
MS.gene89633.t1 | MTR_2g094600 | 52.083 | 144 | 52 | 6 | 149 | 280 | 142 | 280 | 4.14e-34 | 126 |
MS.gene89633.t1 | MTR_1g094930 | 33.648 | 318 | 122 | 11 | 35 | 285 | 16 | 311 | 7.13e-34 | 126 |
MS.gene89633.t1 | MTR_1g094930 | 72.857 | 70 | 19 | 0 | 216 | 285 | 147 | 216 | 9.18e-33 | 120 |
MS.gene89633.t1 | MTR_5g007600 | 68.000 | 75 | 24 | 0 | 214 | 288 | 257 | 331 | 2.34e-32 | 122 |
MS.gene89633.t1 | MTR_5g007600 | 72.727 | 66 | 18 | 0 | 214 | 279 | 155 | 220 | 2.94e-30 | 116 |
MS.gene89633.t1 | MTR_4g058910 | 71.014 | 69 | 20 | 0 | 214 | 282 | 312 | 380 | 2.04e-31 | 120 |
MS.gene89633.t1 | MTR_7g445950 | 32.402 | 179 | 90 | 7 | 103 | 277 | 30 | 181 | 2.36e-20 | 86.7 |
MS.gene89633.t1 | MTR_7g446110 | 56.452 | 62 | 27 | 0 | 216 | 277 | 187 | 248 | 1.22e-19 | 86.3 |
MS.gene89633.t1 | MTR_7g446070 | 30.508 | 177 | 108 | 4 | 103 | 277 | 30 | 193 | 1.31e-17 | 79.3 |
MS.gene89633.t1 | MTR_7g445980 | 53.030 | 66 | 30 | 1 | 214 | 278 | 31 | 96 | 2.00e-17 | 76.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89633.t1 | AT5G66320 | 45.079 | 315 | 136 | 5 | 7 | 284 | 3 | 317 | 1.06e-67 | 214 |
MS.gene89633.t1 | AT5G66320 | 45.079 | 315 | 136 | 5 | 7 | 284 | 3 | 317 | 1.06e-67 | 214 |
MS.gene89633.t1 | AT3G51080 | 46.125 | 271 | 118 | 8 | 43 | 288 | 26 | 293 | 8.92e-60 | 193 |
MS.gene89633.t1 | AT4G32890 | 40.727 | 275 | 107 | 8 | 43 | 285 | 16 | 266 | 1.56e-53 | 177 |
MS.gene89633.t1 | AT4G36240 | 42.213 | 244 | 123 | 3 | 40 | 283 | 6 | 231 | 3.44e-53 | 174 |
MS.gene89633.t1 | AT4G34680 | 39.655 | 290 | 129 | 10 | 1 | 285 | 1 | 249 | 3.09e-47 | 159 |
MS.gene89633.t1 | AT4G34680 | 39.655 | 290 | 129 | 10 | 1 | 285 | 1 | 249 | 3.09e-47 | 159 |
MS.gene89633.t1 | AT3G60530 | 49.206 | 189 | 68 | 7 | 98 | 284 | 64 | 226 | 1.27e-45 | 154 |
MS.gene89633.t1 | AT5G25830 | 38.489 | 278 | 133 | 9 | 44 | 285 | 13 | 288 | 2.28e-44 | 154 |
MS.gene89633.t1 | AT2G45050 | 42.009 | 219 | 106 | 6 | 74 | 286 | 46 | 249 | 3.00e-44 | 151 |
MS.gene89633.t1 | AT3G24050 | 66.667 | 81 | 27 | 0 | 202 | 282 | 180 | 260 | 1.78e-35 | 129 |
MS.gene89633.t1 | AT1G08010 | 59.048 | 105 | 31 | 2 | 192 | 284 | 184 | 288 | 1.26e-33 | 125 |
MS.gene89633.t1 | AT1G08010 | 59.048 | 105 | 31 | 2 | 192 | 284 | 184 | 288 | 1.26e-33 | 125 |
MS.gene89633.t1 | AT1G08010 | 59.048 | 105 | 31 | 2 | 192 | 284 | 184 | 288 | 1.26e-33 | 125 |
MS.gene89633.t1 | AT3G54810 | 76.471 | 68 | 16 | 0 | 216 | 283 | 229 | 296 | 4.64e-32 | 121 |
MS.gene89633.t1 | AT3G54810 | 76.471 | 68 | 16 | 0 | 216 | 283 | 229 | 296 | 4.64e-32 | 121 |
MS.gene89633.t1 | AT1G08000 | 69.444 | 72 | 22 | 0 | 213 | 284 | 215 | 286 | 3.20e-31 | 118 |
MS.gene89633.t1 | AT1G08000 | 69.444 | 72 | 22 | 0 | 213 | 284 | 215 | 286 | 3.20e-31 | 118 |
MS.gene89633.t1 | AT3G45170 | 65.714 | 70 | 24 | 0 | 218 | 287 | 117 | 186 | 2.79e-29 | 110 |
MS.gene89633.t1 | AT2G28340 | 64.615 | 65 | 23 | 0 | 218 | 282 | 193 | 257 | 3.16e-25 | 102 |
MS.gene89633.t1 | AT2G18380 | 31.429 | 140 | 74 | 4 | 114 | 248 | 2 | 124 | 2.17e-12 | 65.5 |
MS.gene89633.t1 | AT5G26930 | 57.143 | 42 | 18 | 0 | 210 | 251 | 20 | 61 | 9.19e-11 | 58.9 |
Find 57 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCGCATCTCAATAACTTTC+CGG | 0.265019 | 8.3:-27609332 | None:intergenic |
CGGAAGAAGGAGTTTGTTCC+CGG | 0.320773 | 8.3:+27609354 | MS.gene89633:CDS |
GATGAATTGGCTAATGAAAT+TGG | 0.328161 | 8.3:-27609021 | None:intergenic |
AACAAACTGGTTGTTGAGTA+TGG | 0.356636 | 8.3:-27608655 | None:intergenic |
TTGTGGGGTTCGTTATAAAT+CGG | 0.359488 | 8.3:+27609239 | MS.gene89633:CDS |
TTCATGTTCTTGTTCTTCGT+TGG | 0.402622 | 8.3:-27608556 | None:intergenic |
AGAAGCAAGAGAACAAGAAC+TGG | 0.418838 | 8.3:+27608985 | MS.gene89633:CDS |
TGGAGTGTGAAATTTCGTTT+TGG | 0.430031 | 8.3:-27608635 | None:intergenic |
GAGTACCGGGACGGTGAGTT+CGG | 0.438646 | 8.3:-27608691 | None:intergenic |
GCTTGAGGTTGAAGATGAAT+TGG | 0.445209 | 8.3:-27609034 | None:intergenic |
AAATCTTCTAACAACGTTTG+TGG | 0.458911 | 8.3:-27608465 | None:intergenic |
ACACCTCTTGCTTCTCCGTC+CGG | 0.459870 | 8.3:-27609132 | None:intergenic |
TAAATCGGGTCGGTTGTTAC+CGG | 0.468838 | 8.3:+27609254 | MS.gene89633:CDS |
TGTGGGGTTCGTTATAAATC+GGG | 0.473414 | 8.3:+27609240 | MS.gene89633:CDS |
AAACACTTTGTAATGCTTGT+GGG | 0.474975 | 8.3:+27609223 | MS.gene89633:CDS |
AAGACTCCTCAGTGGCGAAC+CGG | 0.476546 | 8.3:+27609186 | MS.gene89633:CDS |
GGTGTTGAAAACGTGGGTTT+TGG | 0.479696 | 8.3:-27608931 | None:intergenic |
AGAAAGTGTAGTTGAGCTTG+AGG | 0.482506 | 8.3:-27609049 | None:intergenic |
CTACAAGCCGGTCTATATTC+CGG | 0.483189 | 8.3:-27609273 | None:intergenic |
CATCTACAGGAGCTATGTCT+TGG | 0.484747 | 8.3:-27608503 | None:intergenic |
AAGAAGCTGCTGATTTAGAA+TGG | 0.493576 | 8.3:+27608830 | MS.gene89633:CDS |
AAGTAGGTAATGAAACAAAC+TGG | 0.494133 | 8.3:-27608668 | None:intergenic |
CCTCAGTGGCGAACCGGACC+AGG | 0.495788 | 8.3:+27609192 | MS.gene89633:CDS |
CAAGAACTGGAGTTCGTGTA+TGG | 0.500167 | 8.3:+27608998 | MS.gene89633:CDS |
TATTGAGATGCGGCGGAAGA+AGG | 0.503721 | 8.3:+27609341 | MS.gene89633:CDS |
AGCGAAAAGGATGGTTTCAC+CGG | 0.517663 | 8.3:+27609113 | MS.gene89633:CDS |
AAGCAAGAGGTGTGCCGCGA+CGG | 0.518041 | 8.3:+27609142 | MS.gene89633:CDS |
AAAACACTTTGTAATGCTTG+TGG | 0.520445 | 8.3:+27609222 | MS.gene89633:CDS |
AACACCATGTTTCAAGACTC+CGG | 0.523388 | 8.3:+27608948 | MS.gene89633:CDS |
TCGACAAAGAAATCATCTAC+AGG | 0.546740 | 8.3:-27608516 | None:intergenic |
ATGTTTCAAGACTCCGGTAC+CGG | 0.555861 | 8.3:+27608954 | MS.gene89633:CDS |
AACACTTTGTAATGCTTGTG+GGG | 0.570684 | 8.3:+27609224 | MS.gene89633:CDS |
AATTGCATTCAAATCATCAC+CGG | 0.574316 | 8.3:+27609313 | MS.gene89633:CDS |
CAGTGGCGAACCGGACCAGG+TGG | 0.582968 | 8.3:+27609195 | MS.gene89633:CDS |
TACTTCCGAACTCACCGTCC+CGG | 0.584243 | 8.3:+27608686 | MS.gene89633:CDS |
ACTTTCTTCTTCAAACCTTG+AGG | 0.584582 | 8.3:+27609065 | MS.gene89633:CDS |
GTTGTTACCGGAATATAGAC+CGG | 0.588332 | 8.3:+27609266 | MS.gene89633:CDS |
TGAGGAATGTTCAAAGCCAT+CGG | 0.593169 | 8.3:+27609083 | MS.gene89633:CDS |
GCAATTCACTCGAAAACGTA+GGG | 0.597483 | 8.3:-27609296 | None:intergenic |
AAAAGGATGGTTTCACCGGA+CGG | 0.600457 | 8.3:+27609117 | MS.gene89633:CDS |
GGGACGGTGAGTTCGGAAGT+AGG | 0.604743 | 8.3:-27608684 | None:intergenic |
GGGTTCGTTATAAATCGGGT+CGG | 0.607157 | 8.3:+27609244 | MS.gene89633:CDS |
ATGGCTTTGAACATTCCTCA+AGG | 0.610559 | 8.3:-27609080 | None:intergenic |
CCTGGTCCGGTTCGCCACTG+AGG | 0.639950 | 8.3:-27609192 | None:intergenic |
ACCGGAAAGTTATTGAGATG+CGG | 0.641146 | 8.3:+27609331 | MS.gene89633:CDS |
CCGCGACGGTGTAGTCATTG+TGG | 0.642726 | 8.3:+27609156 | MS.gene89633:CDS |
GAAACATGGTGTTGAAAACG+TGG | 0.645919 | 8.3:-27608938 | None:intergenic |
AGTGGCGAACCGGACCAGGT+GGG | 0.650608 | 8.3:+27609196 | MS.gene89633:CDS |
GAATAGAGAGAGTACCGGGA+CGG | 0.659768 | 8.3:-27608700 | None:intergenic |
TGCAATTCACTCGAAAACGT+AGG | 0.661564 | 8.3:-27609297 | None:intergenic |
TCACCGGACGGAGAAGCAAG+AGG | 0.663782 | 8.3:+27609129 | MS.gene89633:CDS |
GAAAACGTAGGGCTACAAGC+CGG | 0.674003 | 8.3:-27609285 | None:intergenic |
GGTACCGGAGTCTTGAAACA+TGG | 0.677835 | 8.3:-27608952 | None:intergenic |
AAACATGGTGTTGAAAACGT+GGG | 0.683900 | 8.3:-27608937 | None:intergenic |
GGAAAGTTATTGAGATGCGG+CGG | 0.689583 | 8.3:+27609334 | MS.gene89633:CDS |
CCACAATGACTACACCGTCG+CGG | 0.747757 | 8.3:-27609156 | None:intergenic |
GAGTTCAGAAGACTCCTCAG+TGG | 0.757380 | 8.3:+27609178 | MS.gene89633:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAAGATTGTTTTTTTTTTA+AGG | + | chr8.3:27608764-27608783 | MS.gene89633:intron | 10.0% |
!!! | CTTTCTTTTTTTAATGTAAG+AGG | - | chr8.3:27608725-27608744 | None:intergenic | 20.0% |
!! | AACATTCACAATTTTCATGT+AGG | + | chr8.3:27608804-27608823 | MS.gene89633:intron | 25.0% |
!!! | TGAAATTTCGTTTTGGTTTT+GGG | - | chr8.3:27608631-27608650 | None:intergenic | 25.0% |
AAAACACTTTGTAATGCTTG+TGG | + | chr8.3:27609222-27609241 | MS.gene89633:CDS | 30.0% | |
AAACACTTTGTAATGCTTGT+GGG | + | chr8.3:27609223-27609242 | MS.gene89633:CDS | 30.0% | |
AAATCTTCTAACAACGTTTG+TGG | - | chr8.3:27608468-27608487 | None:intergenic | 30.0% | |
AAGTAGGTAATGAAACAAAC+TGG | - | chr8.3:27608671-27608690 | None:intergenic | 30.0% | |
AATTGCATTCAAATCATCAC+CGG | + | chr8.3:27609313-27609332 | MS.gene89633:CDS | 30.0% | |
GATGAATTGGCTAATGAAAT+TGG | - | chr8.3:27609024-27609043 | None:intergenic | 30.0% | |
! | AGTTGGAGATTTTCTGTTTT+TGG | - | chr8.3:27608892-27608911 | None:intergenic | 30.0% |
!! | CAAGCATTACAAAGTGTTTT+CGG | - | chr8.3:27609222-27609241 | None:intergenic | 30.0% |
!!! | GTGAAATTTCGTTTTGGTTT+TGG | - | chr8.3:27608632-27608651 | None:intergenic | 30.0% |
AACAAACTGGTTGTTGAGTA+TGG | - | chr8.3:27608658-27608677 | None:intergenic | 35.0% | |
AACACTTTGTAATGCTTGTG+GGG | + | chr8.3:27609224-27609243 | MS.gene89633:CDS | 35.0% | |
ACTTTCTTCTTCAAACCTTG+AGG | + | chr8.3:27609065-27609084 | MS.gene89633:CDS | 35.0% | |
TCGACAAAGAAATCATCTAC+AGG | - | chr8.3:27608519-27608538 | None:intergenic | 35.0% | |
TTCATGTTCTTGTTCTTCGT+TGG | - | chr8.3:27608559-27608578 | None:intergenic | 35.0% | |
TTGTGGGGTTCGTTATAAAT+CGG | + | chr8.3:27609239-27609258 | MS.gene89633:CDS | 35.0% | |
! | AAACATGGTGTTGAAAACGT+GGG | - | chr8.3:27608940-27608959 | None:intergenic | 35.0% |
! | CATGAGCTTTTTGTTGAAGT+TGG | - | chr8.3:27608909-27608928 | None:intergenic | 35.0% |
! | TGGAGTGTGAAATTTCGTTT+TGG | - | chr8.3:27608638-27608657 | None:intergenic | 35.0% |
!! | AAGAAGCTGCTGATTTAGAA+TGG | + | chr8.3:27608830-27608849 | MS.gene89633:CDS | 35.0% |
!!! | TGTTTTTGGAAACTCTGAGA+AGG | - | chr8.3:27608878-27608897 | None:intergenic | 35.0% |
AACACCATGTTTCAAGACTC+CGG | + | chr8.3:27608948-27608967 | MS.gene89633:CDS | 40.0% | |
ACCGGAAAGTTATTGAGATG+CGG | + | chr8.3:27609331-27609350 | MS.gene89633:CDS | 40.0% | |
AGAAGCAAGAGAACAAGAAC+TGG | + | chr8.3:27608985-27609004 | MS.gene89633:CDS | 40.0% | |
CATCGGAGAAAAAAGCGAAA+AGG | + | chr8.3:27609100-27609119 | MS.gene89633:CDS | 40.0% | |
GCAATTCACTCGAAAACGTA+GGG | - | chr8.3:27609299-27609318 | None:intergenic | 40.0% | |
GCTTGAGGTTGAAGATGAAT+TGG | - | chr8.3:27609037-27609056 | None:intergenic | 40.0% | |
GGAGAAAAAAGCGAAAAGGA+TGG | + | chr8.3:27609104-27609123 | MS.gene89633:CDS | 40.0% | |
GTTGTTACCGGAATATAGAC+CGG | + | chr8.3:27609266-27609285 | MS.gene89633:CDS | 40.0% | |
TGAGGAATGTTCAAAGCCAT+CGG | + | chr8.3:27609083-27609102 | MS.gene89633:CDS | 40.0% | |
TGCAATTCACTCGAAAACGT+AGG | - | chr8.3:27609300-27609319 | None:intergenic | 40.0% | |
TGTGGGGTTCGTTATAAATC+GGG | + | chr8.3:27609240-27609259 | MS.gene89633:CDS | 40.0% | |
! | AAGAGGAATAGAGAGAGTAC+CGG | - | chr8.3:27608708-27608727 | None:intergenic | 40.0% |
! | AGAAAGTGTAGTTGAGCTTG+AGG | - | chr8.3:27609052-27609071 | None:intergenic | 40.0% |
! | GAAACATGGTGTTGAAAACG+TGG | - | chr8.3:27608941-27608960 | None:intergenic | 40.0% |
!! | ATGGCTTTGAACATTCCTCA+AGG | - | chr8.3:27609083-27609102 | None:intergenic | 40.0% |
!!! | CTTTTCGCTTTTTTCTCCGA+TGG | - | chr8.3:27609102-27609121 | None:intergenic | 40.0% |
!!! | GGTTTTGGGTGTTGTTTTGA+GGG | - | chr8.3:27608617-27608636 | None:intergenic | 40.0% |
!!! | GTTTTGGGTGTTGTTTTGAG+GGG | - | chr8.3:27608616-27608635 | None:intergenic | 40.0% |
!!! | TGGTTTTGGGTGTTGTTTTG+AGG | - | chr8.3:27608618-27608637 | None:intergenic | 40.0% |
AAAAGGATGGTTTCACCGGA+CGG | + | chr8.3:27609117-27609136 | MS.gene89633:CDS | 45.0% | |
AGCGAAAAGGATGGTTTCAC+CGG | + | chr8.3:27609113-27609132 | MS.gene89633:CDS | 45.0% | |
ATGTTTCAAGACTCCGGTAC+CGG | + | chr8.3:27608954-27608973 | MS.gene89633:CDS | 45.0% | |
CAAGAACTGGAGTTCGTGTA+TGG | + | chr8.3:27608998-27609017 | MS.gene89633:CDS | 45.0% | |
CATCTACAGGAGCTATGTCT+TGG | - | chr8.3:27608506-27608525 | None:intergenic | 45.0% | |
CTACAAGCCGGTCTATATTC+CGG | - | chr8.3:27609276-27609295 | None:intergenic | 45.0% | |
GCCGCATCTCAATAACTTTC+CGG | - | chr8.3:27609335-27609354 | None:intergenic | 45.0% | |
GGAAAGTTATTGAGATGCGG+CGG | + | chr8.3:27609334-27609353 | MS.gene89633:CDS | 45.0% | |
GGGTTCGTTATAAATCGGGT+CGG | + | chr8.3:27609244-27609263 | MS.gene89633:CDS | 45.0% | |
TAAATCGGGTCGGTTGTTAC+CGG | + | chr8.3:27609254-27609273 | MS.gene89633:CDS | 45.0% | |
!! | AGAGGAATAGAGAGAGTACC+GGG | - | chr8.3:27608707-27608726 | None:intergenic | 45.0% |
!! | CTCTTGCTTCTTGCTTTTGC+CGG | - | chr8.3:27608976-27608995 | None:intergenic | 45.0% |
!! | GGTGTTGAAAACGTGGGTTT+TGG | - | chr8.3:27608934-27608953 | None:intergenic | 45.0% |
GAAAACGTAGGGCTACAAGC+CGG | - | chr8.3:27609288-27609307 | None:intergenic | 50.0% | |
GAGTTCAGAAGACTCCTCAG+TGG | + | chr8.3:27609178-27609197 | MS.gene89633:CDS | 50.0% | |
TATTGAGATGCGGCGGAAGA+AGG | + | chr8.3:27609341-27609360 | MS.gene89633:CDS | 50.0% | |
! | CGGAAGAAGGAGTTTGTTCC+CGG | + | chr8.3:27609354-27609373 | MS.gene89633:CDS | 50.0% |
! | GGTACCGGAGTCTTGAAACA+TGG | - | chr8.3:27608955-27608974 | None:intergenic | 50.0% |
!! | CTTCTTGCTTTTGCCGGTAC+CGG | - | chr8.3:27608970-27608989 | None:intergenic | 50.0% |
!! | GAATAGAGAGAGTACCGGGA+CGG | - | chr8.3:27608703-27608722 | None:intergenic | 50.0% |
!!! | GGGTGTTGTTTTGAGGGGTA+TGG | - | chr8.3:27608611-27608630 | None:intergenic | 50.0% |
AAGACTCCTCAGTGGCGAAC+CGG | + | chr8.3:27609186-27609205 | MS.gene89633:CDS | 55.0% | |
ACACCTCTTGCTTCTCCGTC+CGG | - | chr8.3:27609135-27609154 | None:intergenic | 55.0% | |
CCACAATGACTACACCGTCG+CGG | - | chr8.3:27609159-27609178 | None:intergenic | 55.0% | |
TACTTCCGAACTCACCGTCC+CGG | + | chr8.3:27608686-27608705 | MS.gene89633:CDS | 55.0% | |
!! | CAAAGTGTTTTCGGCCCACC+TGG | - | chr8.3:27609213-27609232 | None:intergenic | 55.0% |
CCGCGACGGTGTAGTCATTG+TGG | + | chr8.3:27609156-27609175 | MS.gene89633:CDS | 60.0% | |
GGGACGGTGAGTTCGGAAGT+AGG | - | chr8.3:27608687-27608706 | None:intergenic | 60.0% | |
TCACCGGACGGAGAAGCAAG+AGG | + | chr8.3:27609129-27609148 | MS.gene89633:CDS | 60.0% | |
! | AAGCAAGAGGTGTGCCGCGA+CGG | + | chr8.3:27609142-27609161 | MS.gene89633:CDS | 60.0% |
! | TGTTTTCGGCCCACCTGGTC+CGG | - | chr8.3:27609208-27609227 | None:intergenic | 60.0% |
!! | GAGTACCGGGACGGTGAGTT+CGG | - | chr8.3:27608694-27608713 | None:intergenic | 60.0% |
AGTGGCGAACCGGACCAGGT+GGG | + | chr8.3:27609196-27609215 | MS.gene89633:CDS | 65.0% | |
CAGTGGCGAACCGGACCAGG+TGG | + | chr8.3:27609195-27609214 | MS.gene89633:CDS | 70.0% | |
CCTCAGTGGCGAACCGGACC+AGG | + | chr8.3:27609192-27609211 | MS.gene89633:CDS | 70.0% | |
! | CCTGGTCCGGTTCGCCACTG+AGG | - | chr8.3:27609195-27609214 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 27608396 | 27609383 | 27608396 | ID=MS.gene89633 |
chr8.3 | mRNA | 27608396 | 27609383 | 27608396 | ID=MS.gene89633.t1;Parent=MS.gene89633 |
chr8.3 | exon | 27608396 | 27608707 | 27608396 | ID=MS.gene89633.t1.exon1;Parent=MS.gene89633.t1 |
chr8.3 | CDS | 27608396 | 27608707 | 27608396 | ID=cds.MS.gene89633.t1;Parent=MS.gene89633.t1 |
chr8.3 | exon | 27608826 | 27609383 | 27608826 | ID=MS.gene89633.t1.exon2;Parent=MS.gene89633.t1 |
chr8.3 | CDS | 27608826 | 27609383 | 27608826 | ID=cds.MS.gene89633.t1;Parent=MS.gene89633.t1 |
Gene Sequence |
Protein sequence |