AlfalfaGEDB | MS.gene89680

M. sativa cultivar XinJiangDaYe / MS.gene89680

KEGG: K08829
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89680.t1	XP_003612616.1	94.3	88	4	1	1	87	1	88	8.40E-37	162.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89680.t1	Q6Z8C8	78.4	88	18	1	1	87	1	88	2.8e-33	142.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89680.t1	G7K6V4	94.3	88	4	1	1	87	1	88	6.0e-37	162.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89680.t1	MTR_5g026960	94.318	88	4	1	1	87	1	88	2.88e-53	172
MS.gene89680.t1	MTR_8g071230	85.227	88	12	1	1	87	1	88	1.79e-48	160
MS.gene89680.t1	MTR_8g012450	54.545	88	39	1	1	87	1	88	6.37e-29	107
MS.gene89680.t1	MTR_8g012450	54.545	88	39	1	1	87	1	88	8.39e-29	107
MS.gene89680.t1	MTR_3g054080	41.860	86	47	1	2	84	12	97	1.69e-14	68.2
MS.gene89680.t1	MTR_8g461040	41.304	92	48	2	3	88	25	116	4.43e-13	64.3
MS.gene89680.t1	MTR_6g013030	38.095	84	49	2	2	82	108	191	1.61e-12	62.8
MS.gene89680.t1	MTR_1g098300	36.782	87	50	3	2	84	124	209	4.31e-12	61.2
MS.gene89680.t1	MTR_4g094430	34.940	83	53	1	1	82	1	83	1.00e-11	60.1
MS.gene89680.t1	MTR_5g013550	42.500	80	44	2	2	81	4	81	1.22e-11	60.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89680.t1	AT4G19110	86.364	88	11	1	1	87	1	88	1.05e-50	166
MS.gene89680.t1	AT4G19110	86.364	88	11	1	1	87	1	88	1.12e-50	166
MS.gene89680.t1	AT5G45430	80.682	88	16	1	1	87	1	88	1.76e-46	155
MS.gene89680.t1	AT5G45430	80.682	88	16	1	1	87	1	88	1.80e-46	155
MS.gene89680.t1	AT4G13020	64.634	82	29	0	1	82	1	82	7.28e-36	126
MS.gene89680.t1	AT4G13020	64.634	82	29	0	1	82	1	82	8.72e-36	126
MS.gene89680.t1	AT4G13020	64.634	82	29	0	1	82	1	82	1.28e-35	125
MS.gene89680.t1	AT4G13020	64.634	82	29	0	1	82	1	82	1.34e-35	126
MS.gene89680.t1	AT4G13020	63.415	82	30	0	1	82	9	90	3.77e-34	122
MS.gene89680.t1	AT4G13020	63.415	82	30	0	1	82	9	90	3.82e-34	122

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Find 24 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTGTCCGACACAAACA+TGG	0.557828	3.4:-45739424	None:intergenic
AAGTTGGTGATGGAACATTT+GGG	0.510987	3.4:+45738863	MS.gene89680:CDS
AATCATACTTACAACTTCAC+CGG	0.516771	3.4:-45738914	None:intergenic
AATCCCAACCATGTTTGTGT+CGG	0.642986	3.4:+45739416	MS.gene89680:CDS
ACAAAAGACAGAATATCTAC+AGG	0.563192	3.4:+45739278	MS.gene89680:CDS
AGAGCTATTAGTAAGCAAAC+CGG	0.583714	3.4:+45738895	MS.gene89680:CDS
ATAATCAAGGAAGTTGGTGA+TGG	0.578661	3.4:+45738853	MS.gene89680:CDS
ATGGAACATTTGGGAGTGTC+TGG	0.443342	3.4:+45738872	MS.gene89680:CDS
CCCAAATATTGTGAAGCTGA+AGG	0.606272	3.4:+45739194	MS.gene89680:CDS
CCTTCAGCTTCACAATATTT+GGG	0.345373	3.4:-45739194	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCATACTTACAACTTCAC+CGG	-	chr3.4:45738917-45738936	None:intergenic	30.0%
ACAAAAGACAGAATATCTAC+AGG	+	chr3.4:45739278-45739297	MS.gene89680:CDS	30.0%
ATAACGCATAACAACAACAA+AGG	-	chr3.4:45739105-45739124	None:intergenic	30.0%
CTACAGGTACAAAATAATCA+AGG	+	chr3.4:45738840-45738859	MS.gene89680:intron	30.0%
GAAGAAGAAATATTACTCCT+GGG	+	chr3.4:45739022-45739041	MS.gene89680:CDS	30.0%
TGAAGAAGAAATATTACTCC+TGG	+	chr3.4:45739021-45739040	MS.gene89680:CDS	30.0%
AGAGCTATTAGTAAGCAAAC+CGG	+	chr3.4:45738895-45738914	MS.gene89680:CDS	35.0%
CCTTCAGCTTCACAATATTT+GGG	-	chr3.4:45739197-45739216	None:intergenic	35.0%
GTAATACCTTGACTACTCTT+AGG	-	chr3.4:45739061-45739080	None:intergenic	35.0%
TCCTTCAGCTTCACAATATT+TGG	-	chr3.4:45739198-45739217	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	45738759	45739448	45738759	ID=MS.gene89680
chr3.4	mRNA	45738759	45739448	45738759	ID=MS.gene89680.t1;Parent=MS.gene89680
chr3.4	exon	45738759	45738766	45738759	ID=MS.gene89680.t1.exon1;Parent=MS.gene89680.t1
chr3.4	CDS	45738759	45738766	45738759	ID=cds.MS.gene89680.t1;Parent=MS.gene89680.t1
chr3.4	exon	45738846	45738924	45738846	ID=MS.gene89680.t1.exon2;Parent=MS.gene89680.t1
chr3.4	CDS	45738846	45738924	45738846	ID=cds.MS.gene89680.t1;Parent=MS.gene89680.t1
chr3.4	exon	45739005	45739073	45739005	ID=MS.gene89680.t1.exon3;Parent=MS.gene89680.t1
chr3.4	CDS	45739005	45739073	45739005	ID=cds.MS.gene89680.t1;Parent=MS.gene89680.t1
chr3.4	exon	45739174	45739299	45739174	ID=MS.gene89680.t1.exon4;Parent=MS.gene89680.t1
chr3.4	CDS	45739174	45739299	45739174	ID=cds.MS.gene89680.t1;Parent=MS.gene89680.t1
chr3.4	exon	45739395	45739448	45739395	ID=MS.gene89680.t1.exon5;Parent=MS.gene89680.t1
chr3.4	CDS	45739395	45739448	45739395	ID=cds.MS.gene89680.t1;Parent=MS.gene89680.t1

Gene Sequence

>MS.gene89680

ATGGAGAGGTGATTCATTTTCTGAAGAAATTACTAATTTTCTCATTTACTGTGTGGACTATTTTAACATTTTTCCTTGACACTACAGGTACAAAATAATCAAGGAAGTTGGTGATGGAACATTTGGGAGTGTCTGGAGAGCTATTAGTAAGCAAACCGGTGAAGTTGTAAGTATGATTTACTGGTATGTTGAAGTTTTCTCTATTTGAAGTGACATTTTTCTCCTAATCAGTTACAAAATTTGCAGGCTGCGATCAAGAAAATGAAGAAGAAATATTACTCCTGGGAGGAGTGCGTAAACCTAAGAGTAGTCAAGGTATTACTTCATACTTATCTTTCTGGAGCCTTTGTTGTTGTTATGCGTTATTATATTCTTTTGTATTTAGTCTCTGATCTCTTGTTTCCCTTGCTGGCAGTCTTTACGAAAAATGAACCACCCAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGACATTTTGTACTTTGTTTTTGAGTACATGGTGACATTGTACCAACAAAAGACAGAATATCTACAGGTGTGTATGTGTATACAACTCTTTATTAGGAAGGTGACATTGTATTTCATGATTCAAGTCGAGTCACTCATGTTATTTCATTATGTTTGTGTCAGATATGTTGTGGAATGCTGCTGAATCCCAACCATGTTTGTGTCGGACAATGTTAA

Protein sequence

>MS.gene89680.t1

MERYKIIKEVGDGTFGSVWRAISKQTGEVAAIKKMKKKYYSWEECVNLRVVKSLRKMNHPNIVKLKEVIRESDILYFVFEYMVTLYQQKTEYLQICCGMLLNPNHVCVGQC