AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89733

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89733.t1 MTR_0100s0160 97.203 286 8 0 1 286 1 286 0.0 582
MS.gene89733.t1 MTR_7g091810 65.505 287 78 2 1 285 1 268 2.49e-129 368
MS.gene89733.t1 MTR_6g008210 48.921 139 64 2 2 137 5 139 3.10e-38 133
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89733.t1 AT2G41835 63.066 287 96 3 1 286 1 278 1.81e-128 367
MS.gene89733.t1 AT3G57480 53.659 287 95 2 1 287 1 249 1.25e-106 310
MS.gene89733.t1 AT3G57480 53.659 287 95 2 1 287 1 249 1.25e-106 310
MS.gene89733.t1 AT3G28210 41.081 185 79 4 2 183 5 162 5.87e-38 132
MS.gene89733.t1 AT3G28210 41.081 185 79 4 2 183 5 162 5.87e-38 132
MS.gene89733.t1 AT5G48205 53.211 109 23 3 1 106 1 84 1.10e-28 108

Find 64 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTCATTAGATTCATAAA+AGG 0.234892 1.3:+34703903 None:intergenic
TTTCCTAGATCTGGAAATTC+TGG 0.237504 1.3:+34705681 None:intergenic
CAACTTCCTCTTCATCTAAA+TGG 0.241413 1.3:-34703845 MS.gene89733:CDS
TGATTCTCCCATGTTATGTT+TGG 0.327400 1.3:+34704122 None:intergenic
GTAACTTTCTCATAATTTGA+TGG 0.361749 1.3:+34704080 None:intergenic
CGCTTCTAATATTCGAGCTT+CGG 0.377494 1.3:-34703802 MS.gene89733:CDS
ATCTCTTTGCATCCAGCTGC+AGG 0.399699 1.3:+34704041 None:intergenic
GGTCCTGGACATTTGTGATC+AGG 0.415571 1.3:+34703948 None:intergenic
TATTCATTAGATTCATAAAA+GGG 0.437840 1.3:+34703904 None:intergenic
CACTTGCGATCGCTGCTACC+AGG 0.446006 1.3:-34705613 MS.gene89733:intron
ATTCGAGCTTCGGCTGAGGC+TGG 0.454635 1.3:-34703792 MS.gene89733:CDS
TAGACCATTGTTTGAAGCAT+AGG 0.457915 1.3:-34703977 MS.gene89733:CDS
AGTAGTGATCGAGGAAAACT+TGG 0.461509 1.3:+34703662 None:intergenic
ATATGTCCACTCTGCGCTAA+AGG 0.469963 1.3:-34704170 MS.gene89733:CDS
ACTCCAGAATTTCCAGATCT+AGG 0.478228 1.3:-34705684 MS.gene89733:CDS
TAACTTTCTCATAATTTGAT+GGG 0.483060 1.3:+34704081 None:intergenic
GTGGTGAAATTAACCAAGCC+TGG 0.484928 1.3:-34703755 MS.gene89733:CDS
TGTAGTCCATTTAGATGAAG+AGG 0.489078 1.3:+34703839 None:intergenic
GTTATGTTTGGATCCTGCTC+AGG 0.489244 1.3:+34704134 None:intergenic
TCTCAAACACAATTAAATGC+AGG 0.489246 1.3:-34704010 MS.gene89733:CDS
TTGGATCCTGCTCAGGAACT+AGG 0.495847 1.3:+34704141 None:intergenic
CTCAAACACAATTAAATGCA+GGG 0.496678 1.3:-34704009 MS.gene89733:CDS
CATTGTTTGAAGCATAGGTT+TGG 0.498039 1.3:-34703972 MS.gene89733:CDS
AGAGGAAGTTGAACTTGAGT+TGG 0.498928 1.3:+34703857 None:intergenic
AAAACTTGGCACCGCATTGA+GGG 0.499599 1.3:+34703676 None:intergenic
GAAATCAACGAGCTTGCAAT+CGG 0.515709 1.3:+34705644 None:intergenic
CACAGATCCCGTGTCCCTTG+TGG 0.520415 1.3:-34703544 MS.gene89733:CDS
GCGTGTCCTAAGTGTAGTAA+AGG 0.526636 1.3:-34703570 MS.gene89733:CDS
CCCTCTCAACATGCTCCACA+AGG 0.529390 1.3:+34703529 None:intergenic
GTGAATCCTTTACTACACTT+AGG 0.538962 1.3:+34703564 None:intergenic
ACACTTAGGACACGCATCAA+TGG 0.539521 1.3:+34703578 None:intergenic
AGCAGGATCCAAACATAACA+TGG 0.545450 1.3:-34704130 MS.gene89733:CDS
GGTCCTGATCACAAATGTCC+AGG 0.548572 1.3:-34703951 MS.gene89733:CDS
AGTCCGCCTAGTTCCTGAGC+AGG 0.549923 1.3:-34704147 MS.gene89733:CDS
GAAAACTTGGCACCGCATTG+AGG 0.550498 1.3:+34703675 None:intergenic
TGGTGAAATTAACCAAGCCT+GGG 0.551641 1.3:-34703754 MS.gene89733:CDS
TAATATTCGAGCTTCGGCTG+AGG 0.559139 1.3:-34703796 MS.gene89733:CDS
GGGAGAAAGAGCAACGGCAG+TGG 0.567326 1.3:-34703714 MS.gene89733:CDS
CAAACCTATGCTTCAAACAA+TGG 0.573057 1.3:+34703973 None:intergenic
AACATGCTCCACAAGGGACA+CGG 0.573079 1.3:+34703536 None:intergenic
GAGCAACGGCAGTGGTCAAG+TGG 0.573351 1.3:-34703706 MS.gene89733:CDS
ACCGATGTTTGATATAACTT+CGG 0.574169 1.3:+34704228 None:intergenic
TGGTGGCACTTCTAGAACAT+AGG 0.575559 1.3:-34703502 None:intergenic
TAGCAGCGATCGCAAGTGAA+AGG 0.598354 1.3:+34705618 None:intergenic
ACATGCTCCACAAGGGACAC+GGG 0.604172 1.3:+34703537 None:intergenic
TGGTAACATTCGCAACAGAT+CGG 0.605303 1.3:+34703598 None:intergenic
ATAATTTGATGGGTCGCAGT+CGG 0.619214 1.3:+34704091 None:intergenic
TCTCTTTGCATCCAGCTGCA+GGG 0.624481 1.3:+34704042 None:intergenic
GAGCATGTTGAGAGGGAACA+TGG 0.625868 1.3:-34703522 MS.gene89733:CDS
CCCTTGTGGAGCATGTTGAG+AGG 0.626858 1.3:-34703530 MS.gene89733:CDS
ATCGATTAAAGTAGTGATCG+AGG 0.631399 1.3:+34703653 None:intergenic
CGAAGCTCGAATATTAGAAG+CGG 0.637300 1.3:+34703803 None:intergenic
CCTTGTGGAGCATGTTGAGA+GGG 0.637426 1.3:-34703529 MS.gene89733:CDS
CGGACTCCTTTAGCGCAGAG+TGG 0.642605 1.3:+34704164 None:intergenic
ACCGAAGTTATATCAAACAT+CGG 0.669814 1.3:-34704229 MS.gene89733:CDS
GCAGGATCCAAACATAACAT+GGG 0.682580 1.3:-34704129 MS.gene89733:CDS
CCTCTCAACATGCTCCACAA+GGG 0.702395 1.3:+34703530 None:intergenic
GGTGAAATTAACCAAGCCTG+GGG 0.712063 1.3:-34703753 MS.gene89733:CDS
AATGGTGGGAGAAAGAGCAA+CGG 0.715605 1.3:-34703720 MS.gene89733:CDS
GCTGGAATGTCAAAGTTGAG+TGG 0.723894 1.3:-34703774 MS.gene89733:CDS
GATCCTGCTCAGGAACTAGG+CGG 0.744993 1.3:+34704144 None:intergenic
GTGAAATTAACCAAGCCTGG+GGG 0.745657 1.3:-34703752 MS.gene89733:CDS
GTGGAGCAATGCCCTCAATG+CGG 0.747142 1.3:-34703687 MS.gene89733:CDS
CATGTTGAGAGGGAACATGG+TGG 0.749762 1.3:-34703519 MS.gene89733:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATTAAGAATGCAAAA+TGG + chr1.3:34703684-34703703 None:intergenic 15.0%
!! AATTATTAAGAATGCAAAAT+GGG + chr1.3:34703683-34703702 None:intergenic 15.0%
!! TAGTTTAATTAAGTGTTTAT+TGG + chr1.3:34704049-34704068 None:intergenic 15.0%
!! TATTCATTAGATTCATAAAA+GGG + chr1.3:34705292-34705311 None:intergenic 15.0%
!!! AATCATATAAGCTATTTTTT+GGG + chr1.3:34703862-34703881 None:intergenic 15.0%
!!! ACATTGTATTTTTATTTTTG+AGG - chr1.3:34704757-34704776 MS.gene89733:intron 15.0%
!!! TAATCATATAAGCTATTTTT+TGG + chr1.3:34703863-34703882 None:intergenic 15.0%
!! AAGAAAAAGAAAAGAGAAAT+TGG + chr1.3:34703616-34703635 None:intergenic 20.0%
!! AATGAATAGAAGTAGAAAAA+AGG - chr1.3:34705304-34705323 MS.gene89733:intron 20.0%
!! CTATTCATTAGATTCATAAA+AGG + chr1.3:34705293-34705312 None:intergenic 20.0%
!! TAACTTTCTCATAATTTGAT+GGG + chr1.3:34705115-34705134 None:intergenic 20.0%
!!! AAATTTGTTTCCACTTTTTT+AGG + chr1.3:34705269-34705288 None:intergenic 20.0%
!!! ATCATATAAGCTATTTTTTG+GGG + chr1.3:34703861-34703880 None:intergenic 20.0%
!!! TGACGATATTTTTATTTTGA+GGG + chr1.3:34704426-34704445 None:intergenic 20.0%
!!! TTGACGATATTTTTATTTTG+AGG + chr1.3:34704427-34704446 None:intergenic 20.0%
! AAAAATGAAAATCGTTTAGG+AGG + chr1.3:34704724-34704743 None:intergenic 25.0%
! AAACTATCATGTGAACAAAT+TGG - chr1.3:34704445-34704464 MS.gene89733:intron 25.0%
! ACCAAAAATGAAAATCGTTT+AGG + chr1.3:34704727-34704746 None:intergenic 25.0%
! AGTTATATTATGGCCTTTAT+AGG - chr1.3:34704315-34704334 MS.gene89733:intron 25.0%
! CAAACGGTTTATCAAAATTA+CGG - chr1.3:34704560-34704579 MS.gene89733:intron 25.0%
! GACTATAACATAGCATAATT+TGG + chr1.3:34704610-34704629 None:intergenic 25.0%
! GAGTTTGAAGGAAAAAAAAT+CGG - chr1.3:34704265-34704284 MS.gene89733:intron 25.0%
! GTAACTTTCTCATAATTTGA+TGG + chr1.3:34705116-34705135 None:intergenic 25.0%
! TTAATTAAACAGAAACAACG+TGG + chr1.3:34703657-34703676 None:intergenic 25.0%
! TTATTGGATAAGCTGTTATA+GGG + chr1.3:34704033-34704052 None:intergenic 25.0%
! TTTATTGGATAAGCTGTTAT+AGG + chr1.3:34704034-34704053 None:intergenic 25.0%
!! CTAGATTTTATTAGGGTTTT+GGG - chr1.3:34703736-34703755 MS.gene89733:CDS 25.0%
!! TCCTAAACGATTTTCATTTT+TGG - chr1.3:34704723-34704742 MS.gene89733:intron 25.0%
!! TTTTGGCCTAGATTTTATTA+GGG - chr1.3:34703729-34703748 MS.gene89733:CDS 25.0%
!!! CATCTAATTGAAAGTACTTT+TGG - chr1.3:34703712-34703731 MS.gene89733:CDS 25.0%
!!! CTTTATTTGGATTTTATCTC+AGG - chr1.3:34703799-34703818 MS.gene89733:CDS 25.0%
!!! TATAACTTGTTGCTTTGAAT+TGG - chr1.3:34703954-34703973 MS.gene89733:CDS 25.0%
!!! TTTTATTTTGAGGGTTTTGA+AGG + chr1.3:34704417-34704436 None:intergenic 25.0%
AAATCGAAACTACGCTTAAA+TGG + chr1.3:34703772-34703791 None:intergenic 30.0%
AATAAACCTGAAGCTTCAAT+TGG + chr1.3:34704382-34704401 None:intergenic 30.0%
ACCGAAGTTATATCAAACAT+CGG - chr1.3:34704964-34704983 MS.gene89733:intron 30.0%
ACCGATGTTTGATATAACTT+CGG + chr1.3:34704968-34704987 None:intergenic 30.0%
CAAAAAGTTCATGAAAGAAG+TGG - chr1.3:34705569-34705588 MS.gene89733:intron 30.0%
CCAAAACCCTAATAAAATCT+AGG + chr1.3:34703738-34703757 None:intergenic 30.0%
CCAAACAATACACCTAAAAT+GGG + chr1.3:34704941-34704960 None:intergenic 30.0%
CTCAAACACAATTAAATGCA+GGG - chr1.3:34705184-34705203 MS.gene89733:intron 30.0%
GCTATTTGACAACATTGAAA+GGG - chr1.3:34704639-34704658 MS.gene89733:intron 30.0%
TAAACTACTTAACTCACCTT+CGG - chr1.3:34704062-34704081 MS.gene89733:CDS 30.0%
TATCATGTGAACAAATTGGA+AGG - chr1.3:34704449-34704468 MS.gene89733:intron 30.0%
TATTATGGCCTTTATAGGAT+AGG - chr1.3:34704320-34704339 MS.gene89733:intron 30.0%
TCCAAACAATACACCTAAAA+TGG + chr1.3:34704942-34704961 None:intergenic 30.0%
TCTCAAACACAATTAAATGC+AGG - chr1.3:34705183-34705202 MS.gene89733:intron 30.0%
TTAAGTGCTTAGACTATGTT+AGG - chr1.3:34703880-34703899 MS.gene89733:CDS 30.0%
TTATAGCTTCTCAAAAGTCA+TGG + chr1.3:34703939-34703958 None:intergenic 30.0%
! CCTAGATTTTATTAGGGTTT+TGG - chr1.3:34703735-34703754 MS.gene89733:CDS 30.0%
! CGATTTTCGAAGACTTTATT+TGG - chr1.3:34703786-34703805 MS.gene89733:CDS 30.0%
! CTTTTGGCCTAGATTTTATT+AGG - chr1.3:34703728-34703747 MS.gene89733:CDS 30.0%
! TGCATGAACTTTAGAAGTTA+AGG + chr1.3:34704787-34704806 None:intergenic 30.0%
! TGCTATTTGACAACATTGAA+AGG - chr1.3:34704638-34704657 MS.gene89733:intron 30.0%
! TGTGGTGACAAAAATTTGTT+AGG - chr1.3:34704137-34704156 MS.gene89733:CDS 30.0%
!! ATTTTGCTTGATGACATTCT+GGG - chr1.3:34704829-34704848 MS.gene89733:intron 30.0%
!! GTGGTGACAAAAATTTGTTA+GGG - chr1.3:34704138-34704157 MS.gene89733:CDS 30.0%
!! TATTTTGCTTGATGACATTC+TGG - chr1.3:34704828-34704847 MS.gene89733:intron 30.0%
!!! TTATTAGGGTTTTGGGTTTA+CGG - chr1.3:34703743-34703762 MS.gene89733:CDS 30.0%
ACGGTAATGCAGAACAATAA+CGG - chr1.3:34704579-34704598 MS.gene89733:intron 35.0%
ATATGGAAGGAAAGAGAAAG+TGG + chr1.3:34704239-34704258 None:intergenic 35.0%
ATCACTCTCCTATCCTATAA+AGG + chr1.3:34704331-34704350 None:intergenic 35.0%
ATCGATTAAAGTAGTGATCG+AGG + chr1.3:34705543-34705562 None:intergenic 35.0%
ATCGCAGATTCAGAAAATAG+AGG - chr1.3:34704486-34704505 MS.gene89733:intron 35.0%
ATGCATGTGTATAGAAGTTG+TGG - chr1.3:34704119-34704138 MS.gene89733:CDS 35.0%
CAAAAAACAAACAGGCTCTT+AGG - chr1.3:34704001-34704020 MS.gene89733:CDS 35.0%
CAAACCTATGCTTCAAACAA+TGG + chr1.3:34705223-34705242 None:intergenic 35.0%
CAAACTCAGTTTGATATGGA+AGG + chr1.3:34704252-34704271 None:intergenic 35.0%
CAACTTCCTCTTCATCTAAA+TGG - chr1.3:34705348-34705367 MS.gene89733:intron 35.0%
CCATATCAAACTGAGTTTGA+AGG - chr1.3:34704253-34704272 MS.gene89733:intron 35.0%
CCTTCAAACTCAGTTTGATA+TGG + chr1.3:34704256-34704275 None:intergenic 35.0%
GCTCTGTGCAAAAATTATCT+TGG + chr1.3:34704295-34704314 None:intergenic 35.0%
GTGAATCCTTTACTACACTT+AGG + chr1.3:34705632-34705651 None:intergenic 35.0%
TATAACACTGCAGAGTCAAA+CGG - chr1.3:34704544-34704563 MS.gene89733:intron 35.0%
TCAAAACCAATTGAAGCTTC+AGG - chr1.3:34704373-34704392 MS.gene89733:intron 35.0%
TGATTCTCCCATGTTATGTT+TGG + chr1.3:34705074-34705093 None:intergenic 35.0%
TGCACAGAGCAGTTATATTA+TGG - chr1.3:34704305-34704324 MS.gene89733:intron 35.0%
TGTAGTCCATTTAGATGAAG+AGG + chr1.3:34705357-34705376 None:intergenic 35.0%
TTTATAGGATAGGAGAGTGA+TGG - chr1.3:34704330-34704349 MS.gene89733:intron 35.0%
TTTCCTAGATCTGGAAATTC+TGG + chr1.3:34703515-34703534 None:intergenic 35.0%
! ATTTGTTAGGGTTGCATGTT+TGG - chr1.3:34704150-34704169 MS.gene89733:CDS 35.0%
! CAATACACCTAAAATGGGTT+TGG + chr1.3:34704936-34704955 None:intergenic 35.0%
! CATTGTTTGAAGCATAGGTT+TGG - chr1.3:34705221-34705240 MS.gene89733:intron 35.0%
! TAGACCATTGTTTGAAGCAT+AGG - chr1.3:34705216-34705235 MS.gene89733:intron 35.0%
!! CCCATTTTAGGTGTATTGTT+TGG - chr1.3:34704938-34704957 MS.gene89733:intron 35.0%
!! TTTTGCTTGATGACATTCTG+GGG - chr1.3:34704830-34704849 MS.gene89733:intron 35.0%
!!! AGCCTGTTTGTTTTTTGAGT+GGG + chr1.3:34703998-34704017 None:intergenic 35.0%
ACTCCAGAATTTCCAGATCT+AGG - chr1.3:34703509-34703528 MS.gene89733:CDS 40.0%
AGAGGAAGTTGAACTTGAGT+TGG + chr1.3:34705339-34705358 None:intergenic 40.0%
AGCAGGATCCAAACATAACA+TGG - chr1.3:34705063-34705082 MS.gene89733:intron 40.0%
AGTAGTGATCGAGGAAAACT+TGG + chr1.3:34705534-34705553 None:intergenic 40.0%
ATACCACTTCCAATGCAAGT+TGG - chr1.3:34703913-34703932 MS.gene89733:CDS 40.0%
ATGTCCAGGACCTAAAAAAG+TGG - chr1.3:34705256-34705275 MS.gene89733:intron 40.0%
CGAAGCTCGAATATTAGAAG+CGG + chr1.3:34705393-34705412 None:intergenic 40.0%
CGCTTCTAATATTCGAGCTT+CGG - chr1.3:34705391-34705410 MS.gene89733:intron 40.0%
CGTGGACACATAAAAGTTGA+AGG + chr1.3:34703639-34703658 None:intergenic 40.0%
GAAATCAACGAGCTTGCAAT+CGG + chr1.3:34703552-34703571 None:intergenic 40.0%
GAAATTGGTTAGTACGAACC+TGG + chr1.3:34703601-34703620 None:intergenic 40.0%
GCAGGATCCAAACATAACAT+GGG - chr1.3:34705064-34705083 MS.gene89733:intron 40.0%
TGGTAACATTCGCAACAGAT+CGG + chr1.3:34705598-34705617 None:intergenic 40.0%
TGGTGAAATTAACCAAGCCT+GGG - chr1.3:34705439-34705458 MS.gene89733:intron 40.0%
TTGGATAAGCTGTTATAGGG+AGG + chr1.3:34704030-34704049 None:intergenic 40.0%
! ACTCGTTTTGCAAGCAAATG+AGG + chr1.3:34704207-34704226 None:intergenic 40.0%
! ATAATTTGATGGGTCGCAGT+CGG + chr1.3:34705105-34705124 None:intergenic 40.0%
! ATTCTGGGGATTTGTGTTTG+TGG - chr1.3:34704844-34704863 MS.gene89733:intron 40.0%
! GCATAAGCCAAACCCATTTT+AGG - chr1.3:34704926-34704945 MS.gene89733:intron 40.0%
! GTTTTGCAAGCAAATGAGGT+TGG + chr1.3:34704203-34704222 None:intergenic 40.0%
!!! CCTGTTTGTTTTTTGAGTGG+GGG + chr1.3:34703996-34704015 None:intergenic 40.0%
!!! GAGCCTGTTTGTTTTTTGAG+TGG + chr1.3:34703999-34704018 None:intergenic 40.0%
!!! GCCTGTTTGTTTTTTGAGTG+GGG + chr1.3:34703997-34704016 None:intergenic 40.0%
!!! GTTTCCACTTTTTTAGGTCC+TGG + chr1.3:34705263-34705282 None:intergenic 40.0%
!!! TTTTGCTTAGCAAGTACCGA+AGG + chr1.3:34704081-34704100 None:intergenic 40.0%
AAAACTTGGCACCGCATTGA+GGG + chr1.3:34705520-34705539 None:intergenic 45.0%
AAGTCATGGCCAACTTGCAT+TGG + chr1.3:34703925-34703944 None:intergenic 45.0%
ACACTTAGGACACGCATCAA+TGG + chr1.3:34705618-34705637 None:intergenic 45.0%
ATATGTCCACTCTGCGCTAA+AGG - chr1.3:34705023-34705042 MS.gene89733:intron 45.0%
CCCCCACTCAAAAAACAAAC+AGG - chr1.3:34703993-34704012 MS.gene89733:CDS 45.0%
GCATTGTAGCTGTAACGTAG+CGG + chr1.3:34704524-34704543 None:intergenic 45.0%
GCGTGTCCTAAGTGTAGTAA+AGG - chr1.3:34705623-34705642 MS.gene89733:CDS 45.0%
GCTGGAATGTCAAAGTTGAG+TGG - chr1.3:34705419-34705438 MS.gene89733:intron 45.0%
GGTGAAATTAACCAAGCCTG+GGG - chr1.3:34705440-34705459 MS.gene89733:intron 45.0%
GTGAAATTAACCAAGCCTGG+GGG - chr1.3:34705441-34705460 MS.gene89733:intron 45.0%
GTGGTGAAATTAACCAAGCC+TGG - chr1.3:34705438-34705457 MS.gene89733:intron 45.0%
GTTATGTTTGGATCCTGCTC+AGG + chr1.3:34705062-34705081 None:intergenic 45.0%
TAATATTCGAGCTTCGGCTG+AGG - chr1.3:34705397-34705416 MS.gene89733:intron 45.0%
! AATGGTGGGAGAAAGAGCAA+CGG - chr1.3:34705473-34705492 MS.gene89733:intron 45.0%
! GAGCAGTGTTTTCCTAGATC+TGG + chr1.3:34703524-34703543 None:intergenic 45.0%
! TGATGGTGAAGCGTAGAACT+GGG - chr1.3:34704347-34704366 MS.gene89733:intron 45.0%
! TGGGTTTGGCTTATGCAGTT+AGG + chr1.3:34704922-34704941 None:intergenic 45.0%
AACATGCTCCACAAGGGACA+CGG + chr1.3:34705660-34705679 None:intergenic 50.0%
ATCTCTTTGCATCCAGCTGC+AGG + chr1.3:34705155-34705174 None:intergenic 50.0%
CATGTTGAGAGGGAACATGG+TGG - chr1.3:34705674-34705693 MS.gene89733:CDS 50.0%
CCTCTCAACATGCTCCACAA+GGG + chr1.3:34705666-34705685 None:intergenic 50.0%
CCTTGTGGAGCATGTTGAGA+GGG - chr1.3:34705664-34705683 MS.gene89733:CDS 50.0%
GAAAACTTGGCACCGCATTG+AGG + chr1.3:34705521-34705540 None:intergenic 50.0%
GAGCATGTTGAGAGGGAACA+TGG - chr1.3:34705671-34705690 MS.gene89733:CDS 50.0%
GGTCCTGATCACAAATGTCC+AGG - chr1.3:34705242-34705261 MS.gene89733:intron 50.0%
GGTCCTGGACATTTGTGATC+AGG + chr1.3:34705248-34705267 None:intergenic 50.0%
TAGCAGCGATCGCAAGTGAA+AGG + chr1.3:34703578-34703597 None:intergenic 50.0%
TCTCTTTGCATCCAGCTGCA+GGG + chr1.3:34705154-34705173 None:intergenic 50.0%
TGGCCAACTTGCATTGGAAG+TGG + chr1.3:34703919-34703938 None:intergenic 50.0%
TTGGATCCTGCTCAGGAACT+AGG + chr1.3:34705055-34705074 None:intergenic 50.0%
! GTGATGGTGAAGCGTAGAAC+TGG - chr1.3:34704346-34704365 MS.gene89733:intron 50.0%
!! AAGAAAAAGTGCCCTGCAGC+TGG - chr1.3:34705140-34705159 MS.gene89733:intron 50.0%
ACATGCTCCACAAGGGACAC+GGG + chr1.3:34705659-34705678 None:intergenic 55.0%
ACCATTGCTTGATGTCCCCC+AGG + chr1.3:34705459-34705478 None:intergenic 55.0%
CCCTCTCAACATGCTCCACA+AGG + chr1.3:34705667-34705686 None:intergenic 55.0%
CCCTTGTGGAGCATGTTGAG+AGG - chr1.3:34705663-34705682 MS.gene89733:CDS 55.0%
GATCCTGCTCAGGAACTAGG+CGG + chr1.3:34705052-34705071 None:intergenic 55.0%
GGGGGACATCAAGCAATGGT+GGG - chr1.3:34705459-34705478 MS.gene89733:intron 55.0%
GTGGAGCAATGCCCTCAATG+CGG - chr1.3:34705506-34705525 MS.gene89733:intron 55.0%
TGGGGGACATCAAGCAATGG+TGG - chr1.3:34705458-34705477 MS.gene89733:intron 55.0%
AGTCCGCCTAGTTCCTGAGC+AGG - chr1.3:34705046-34705065 MS.gene89733:intron 60.0%
ATTCGAGCTTCGGCTGAGGC+TGG - chr1.3:34705401-34705420 MS.gene89733:intron 60.0%
CACAGATCCCGTGTCCCTTG+TGG - chr1.3:34705649-34705668 MS.gene89733:CDS 60.0%
CACTTGCGATCGCTGCTACC+AGG - chr1.3:34703580-34703599 MS.gene89733:CDS 60.0%
CGGACTCCTTTAGCGCAGAG+TGG + chr1.3:34705032-34705051 None:intergenic 60.0%
GAGCAACGGCAGTGGTCAAG+TGG - chr1.3:34705487-34705506 MS.gene89733:intron 60.0%
GCCTGGGGGACATCAAGCAA+TGG - chr1.3:34705455-34705474 MS.gene89733:intron 60.0%
GGGAGAAAGAGCAACGGCAG+TGG - chr1.3:34705479-34705498 MS.gene89733:intron 60.0%
TGCTTGATGTCCCCCAGGCT+TGG + chr1.3:34705454-34705473 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 34703503 34705712 34703503 ID=MS.gene89733
chr1.3 mRNA 34703503 34705712 34703503 ID=MS.gene89733.t1;Parent=MS.gene89733
chr1.3 exon 34705614 34705712 34705614 ID=MS.gene89733.t1.exon1;Parent=MS.gene89733.t1
chr1.3 CDS 34705614 34705712 34705614 ID=cds.MS.gene89733.t1;Parent=MS.gene89733.t1
chr1.3 exon 34703503 34704267 34703503 ID=MS.gene89733.t1.exon2;Parent=MS.gene89733.t1
chr1.3 CDS 34703503 34704267 34703503 ID=cds.MS.gene89733.t1;Parent=MS.gene89733.t1
Gene Sequence

>MS.gene89733

ATGGGGACTCCAGAATTTCCAGATCTAGGAAAACACTGCTCTGACTCCGATTGCAAGCTCGTTGATTTCTTGCCTTTCACTTGCGATCGCTGCTACCAGGTTCGTACTAACCAATTTCTCTTTTCTTTTTCTTCCTTCAACTTTTATGTGTCCACGTTGTTTCTGTTTAATTAATTTCCCATTTTGCATTCTTAATAATTTGTTAAAAACATCTAATTGAAAGTACTTTTGGCCTAGATTTTATTAGGGTTTTGGGTTTACGGTATCCATTTAAGCGTAGTTTCGATTTTCGAAGACTTTATTTGGATTTTATCTCAGGTTATATAATAAGTTGTTTTCAACTCATTTTAGTTTGCCCCAAAAAATAGCTTATATGATTAAGTGCTTAGACTATGTTAGGATAAACTTCAATACCACTTCCAATGCAAGTTGGCCATGACTTTTGAGAAGCTATAACTTGTTGCTTTGAATTGGACGCAAGTTTGAAGCTCCCCCACTCAAAAAACAAACAGGCTCTTAGGTTACCTCCCTATAACAGCTTATCCAATAAACACTTAATTAAACTACTTAACTCACCTTCGGTACTTGCTAAGCAAAACATTGCTCTACTTAGTTGATGCATGTGTATAGAAGTTGTGGTGACAAAAATTTGTTAGGGTTGCATGTTTGGATTAAAGATTGCAAACTGAAGTTTGAACCAACCTCATTTGCTTGCAAAACGAGTTTGCAAACACCACTTTCTCTTTCCTTCCATATCAAACTGAGTTTGAAGGAAAAAAAATCGGTTTTCCAAGATAATTTTTGCACAGAGCAGTTATATTATGGCCTTTATAGGATAGGAGAGTGATGGTGAAGCGTAGAACTGGGAAATCAAAACCAATTGAAGCTTCAGGTTTATTTTATTTTAATAACCTTCAAAACCCTCAAAATAAAAATATCGTCAAACTATCATGTGAACAAATTGGAAGGAATCAGTGTTGTCAATCGCAGATTCAGAAAATAGAGGTTTGTTCAAGTTCCGCTACGTTACAGCTACAATGCTATAACACTGCAGAGTCAAACGGTTTATCAAAATTACGGTAATGCAGAACAATAACGGTTTGTCCAAATTATGCTATGTTATAGTCACTATGTATGCTATTTGACAACATTGAAAGGGATGCTGTAACTTTTTAAATTTAAAAATTCTAAACGACGAAACTTGACTAAATCTCTTTTCCTCCTAAACGATTTTCATTTTTGGTTACATATTAGACATTGTATTTTTATTTTTGAGGTGTGCCTTAACTTCTAAAGTTCATGCAATCAACAATGTTTTTACTTATTATTTTGCTTGATGACATTCTGGGGATTTGTGTTTGTGGAATTAAGTATTATTATTCTTTCTCTGTTCAGTTTGAAGAGCTCTTTGTTTGACCTAACTGCATAAGCCAAACCCATTTTAGGTGTATTGTTTGGAACACCGAAGTTATATCAAACATCGGTGTACAAAAGCTGACAAGCAAGATGTCACTGTAGTAATATGTCCACTCTGCGCTAAAGGAGTCCGCCTAGTTCCTGAGCAGGATCCAAACATAACATGGGAGAATCATGTCAACACCGACTGCGACCCATCAAATTATGAGAAAGTTACAAAGAAGAAAAAGTGCCCTGCAGCTGGATGCAAAGAGATCTTAGTATTCTCAAACACAATTAAATGCAGGGATTGCATGATAGACCATTGTTTGAAGCATAGGTTTGGTCCTGATCACAAATGTCCAGGACCTAAAAAAGTGGAAACAAATTTCCCTTTTATGAATCTAATGAATAGAAGTAGAAAAAAGGAGTCTAAAACCAACTCAAGTTCAACTTCCTCTTCATCTAAATGGACTACAAGCTTTCTTAATGCCGCTTCTAATATTCGAGCTTCGGCTGAGGCTGGAATGTCAAAGTTGAGTGGTGAAATTAACCAAGCCTGGGGGACATCAAGCAATGGTGGGAGAAAGAGCAACGGCAGTGGTCAAGTGGAGCAATGCCCTCAATGCGGTGCCAAGTTTTCCTCGATCACTACTTTAATCGATCATGTGCAAAAAGTTCATGAAAGAAGTGGCAGCCGATCTGTTGCGAATGTTACCATTGATGCGTGTCCTAAGTGTAGTAAAGGATTCACAGATCCCGTGTCCCTTGTGGAGCATGTTGAGAGGGAACATGGTGGCACTTCTAGAACATAG
Protein sequence

>MS.gene89733.t1

MGTPEFPDLGKHCSDSDCKLVDFLPFTCDRCYQVYCLEHRSYIKHRCTKADKQDVTVVICPLCAKGVRLVPEQDPNITWENHVNTDCDPSNYEKVTKKKKCPAAGCKEILVFSNTIKCRDCMIDHCLKHRFGPDHKCPGPKKVETNFPFMNLMNRSRKKESKTNSSSTSSSSKWTTSFLNAASNIRASAEAGMSKLSGEINQAWGTSSNGGRKSNGSGQVEQCPQCGAKFSSITTLIDHVQKVHERSGSRSVANVTIDACPKCSKGFTDPVSLVEHVEREHGGTSRT