AlfalfaGEDB | MS.gene89741

M. sativa cultivar XinJiangDaYe / MS.gene89741

KEGG: K13412
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005509 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00036.35 PF00069.28 PF13202.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89741.t1	PNY10031.1	62.7	488	71	6	1	397	1	468	7.90E-150	540.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89741.t1	Q38873	54.8	487	116	7	1	397	1	473	2.0e-133	477.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89741.t1	A0A2K3P414	62.7	488	71	6	1	397	1	468	5.7e-150	540.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89741.t1	MTR_1g052530	61.270	488	75	8	1	397	1	465	0.0	550
MS.gene89741.t1	MTR_7g091890	57.851	484	104	7	1	397	1	471	1.36e-180	515
MS.gene89741.t1	MTR_1g052530	62.470	421	84	8	1	386	1	382	1.06e-168	481
MS.gene89741.t1	MTR_7g091890	59.233	417	110	7	1	386	1	388	1.70e-157	452
MS.gene89741.t1	MTR_4g107490	49.505	505	123	11	1	393	1	485	4.49e-148	433
MS.gene89741.t1	MTR_7g068710	48.583	494	141	9	1	401	1	474	3.96e-145	425
MS.gene89741.t1	MTR_4g066660	46.966	445	145	5	29	395	52	483	3.86e-130	387
MS.gene89741.t1	MTR_0028s0170	45.966	409	129	5	63	386	79	480	2.68e-111	338
MS.gene89741.t1	MTR_5g089320	40.252	477	187	6	1	386	1	470	4.11e-110	335
MS.gene89741.t1	MTR_1g041150	44.279	402	144	6	63	385	119	519	1.37e-106	328

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89741.t1	AT5G12480	54.415	487	118	8	1	397	1	473	1.58e-171	493
MS.gene89741.t1	AT5G19450	53.512	484	125	7	1	397	1	471	3.44e-165	476
MS.gene89741.t1	AT5G19450	53.512	484	125	7	1	397	1	471	3.44e-165	476
MS.gene89741.t1	AT3G57530	51.205	498	122	9	1	398	1	477	2.88e-159	461
MS.gene89741.t1	AT3G57530	54.651	430	114	8	1	386	1	393	1.67e-147	427
MS.gene89741.t1	AT2G41860	57.213	409	119	8	1	382	1	380	5.93e-144	422
MS.gene89741.t1	AT2G41860	67.164	67	22	0	333	399	403	469	3.67e-22	99.8
MS.gene89741.t1	AT3G51850	46.328	531	150	9	1	421	1	506	6.47e-144	421
MS.gene89741.t1	AT2G41860	56.968	409	120	8	1	382	1	380	1.45e-143	421
MS.gene89741.t1	AT2G41860	67.164	67	22	0	333	399	403	469	3.60e-22	99.8

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Find 82 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTACGGAAGGAATTA+GGG	0.342201	1.3:-34772797	MS.gene89741:CDS
AAAGCGCCGGCTTACTGCAC+AGG	0.477508	1.3:-34770952	MS.gene89741:CDS
AAATCCTCCTAATGTTTCAT+TGG	0.363649	1.3:-34770785	MS.gene89741:CDS
AACCTCTTCCCTCTTGGACT+TGG	0.419617	1.3:-34769487	MS.gene89741:CDS
AACTGTGTAGAAGAGAATTC+GGG	0.488187	1.3:-34772821	MS.gene89741:CDS
AACTTAAGAAAACAGCACTG+AGG	0.760635	1.3:-34770713	MS.gene89741:CDS
AAGCTCAATCTCTCGACCAG+TGG	0.601901	1.3:+34772863	None:intergenic
AATCCTCCTAATGTTTCATT+GGG	0.441297	1.3:-34770784	MS.gene89741:CDS
ACACTTCCTGTGCAGTAAGC+CGG	0.574215	1.3:+34770946	None:intergenic
ACTTAAGAAAACAGCACTGA+GGG	0.590032	1.3:-34770712	MS.gene89741:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCAGTGAAGGTTAATT+TGG	+	chr1.3:34772141-34772160	None:intergenic	30.0%
AAATCCTCCTAATGTTTCAT+TGG	-	chr1.3:34771540-34771559	MS.gene89741:intron	30.0%
AATCCTCCTAATGTTTCATT+GGG	-	chr1.3:34771541-34771560	MS.gene89741:intron	30.0%
AATGCATGCAAAATGAAATG+GGG	+	chr1.3:34772796-34772815	None:intergenic	30.0%
ACACAAAAAAGCTTGAAAAC+TGG	-	chr1.3:34771459-34771478	MS.gene89741:intron	30.0%
ACTAGTAAATAGCATTTACC+TGG	+	chr1.3:34770397-34770416	None:intergenic	30.0%
AGCGTGTAAATCAATTTCAA+AGG	-	chr1.3:34769607-34769626	MS.gene89741:intron	30.0%
ATCTGGTTATATTGAACTTG+AGG	-	chr1.3:34772495-34772514	MS.gene89741:CDS	30.0%
CAAAATATACACCACTAGAA+AGG	-	chr1.3:34772626-34772645	MS.gene89741:CDS	30.0%
CAAGTTCAATATAACCAGAT+TGG	+	chr1.3:34772495-34772514	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	34769344	34773003	34769344	ID=MS.gene89741
chr1.3	mRNA	34769344	34773003	34769344	ID=MS.gene89741.t1;Parent=MS.gene89741
chr1.3	exon	34772479	34773003	34772479	ID=MS.gene89741.t1.exon1;Parent=MS.gene89741.t1
chr1.3	CDS	34772479	34773003	34772479	ID=cds.MS.gene89741.t1;Parent=MS.gene89741.t1
chr1.3	exon	34772360	34772366	34772360	ID=MS.gene89741.t1.exon2;Parent=MS.gene89741.t1
chr1.3	CDS	34772360	34772366	34772360	ID=cds.MS.gene89741.t1;Parent=MS.gene89741.t1
chr1.3	exon	34771950	34772012	34771950	ID=MS.gene89741.t1.exon3;Parent=MS.gene89741.t1
chr1.3	CDS	34771950	34772012	34771950	ID=cds.MS.gene89741.t1;Parent=MS.gene89741.t1
chr1.3	exon	34771686	34771829	34771686	ID=MS.gene89741.t1.exon4;Parent=MS.gene89741.t1
chr1.3	CDS	34771686	34771829	34771686	ID=cds.MS.gene89741.t1;Parent=MS.gene89741.t1
chr1.3	exon	34770943	34771095	34770943	ID=MS.gene89741.t1.exon5;Parent=MS.gene89741.t1
chr1.3	CDS	34770943	34771095	34770943	ID=cds.MS.gene89741.t1;Parent=MS.gene89741.t1
chr1.3	exon	34770713	34770816	34770713	ID=MS.gene89741.t1.exon6;Parent=MS.gene89741.t1
chr1.3	CDS	34770713	34770816	34770713	ID=cds.MS.gene89741.t1;Parent=MS.gene89741.t1
chr1.3	exon	34769783	34769974	34769783	ID=MS.gene89741.t1.exon7;Parent=MS.gene89741.t1
chr1.3	CDS	34769783	34769974	34769783	ID=cds.MS.gene89741.t1;Parent=MS.gene89741.t1
chr1.3	exon	34769344	34769529	34769344	ID=MS.gene89741.t1.exon8;Parent=MS.gene89741.t1
chr1.3	CDS	34769344	34769529	34769344	ID=cds.MS.gene89741.t1;Parent=MS.gene89741.t1

Gene Sequence

>MS.gene89741

ATGGGAAATTGCTGTGCAAATCCATCCAGTAGGAACAATAAACAAAACCGAAAGGAAAAGCCTGGAAAATATGAGCAAGTGAAAATAAACAACAAAATACTAGTGATATTAAAGGAACCCACTGGTCGAGAGATTGAGCTTAGATACGAGTTAGGGAGGGAACTGTGTAGAAGAGAATTCGGGAAAAATTTACGGAAGGAATTAGGGAGAGGAGAATTTGGAATAACATATCTATGCAAAGATAGAAATACTGGAGAAGAATTAGCGTGTAAATCAATTTCAAAGGATAAGCTAAGAACAGCGATTGATATTGAAGATGTTAGAAGAGAGGTTGAGATTATGAGGCATTTACCTAAACATGCAAATATTGTTTCATTGAAGGAGACATATGAGGATGATGATGATGTTCATCTTATTATGGAACACTGTGAAGGTCGTGAACTTGTTGATCGTATTGTCGCTAGAGGATACTACACCGAACACGCAGCCGCAAGTGTGGTTAAATCCATCGTCCAAATTGTTCAGGTCTCCCTCTCTTTTCTCATCTTTTTTTCTCAAAAGTTGTCGTTGTTGTCGTACGTAGTTGTTGTTGTTTTATAACTTAAAAGCTTGGTCGGATATATAATATGGATTTCAGTTGAAAAGTAAGTAAAATTTGAATTTTTTTTGCTTCACAAGCAATATATTATATATCACTTATCAAAGTTTTTGGTAAAAGAGCTGCTTTGAGGATCTCACTTATCAAATTTTTTGCAAATAAAATATATATCATGTTAACATTTGGAGTTAAAATGTTAGGACAAGGTATACTTTGTTTTCTGGCTGGTATGAAGATTCTTAGCTTTCGTTACGCTAATGTGCTTGTGTAAATTTTCCCTTCTGTTGGTTATGATATATTGGGATTTAATGTTTGATTATTTGTTATTTTAGATGTGCCACAAACATGGTGTGATGCATCGGGATCTCAAACCCGAGAACTTTTTGTTTGCAGACAAGAAGGAAACATCATCTTTGAAAGCAATTGACTTTGGTCTGTCAATTTTCTTTAAACCAGGTAAATGCTATTTACTAGTTATGTAATCACTTGATGTTGTTGCTTAATTCTCTTGTTCTTCATCATCATTTTGGTCCTGCCATCCATACACAGTTAACTAAAGTTTACAATTTTGTGTAGGTGAAAGATTTAACGAGATAGTTGGAAGTCCATATTACATGGCCCCTGAAGTATTAAAAAGAAATTATGGCCCTGAAATTGATATCTGGAGTGCTGGAGTTATTCTTTACATCTTACTTTCTGGTGTCAATCCTTTTTGGGCAGGTTGGTTTTTATCTTGCCAAAGCTATATTTGGCTTTTGAGTCGGAAATCTCAATAGACCAACCAAAATCCACATCTAGGATACAGGTTATGTAGCAAGGGTGAGGTTGAACCTTTTATAAGTGAGAGGACCCATAAACCTAACGCCTTAAGAATTTAGGTTAAAGTGTGATGCCCAACTCACTTGTATGGTTTCTCTGAGCCCAATGTGGACGATCCCCTGACCTCTCCTCGTGACCTAATAGAGGCGCACATATTTTTAGTTACTATATCCTACTCTTTTTTTAGAGTAGTTACTATAACCTACTTGAAAGGGTGTTGTAATTATCATAAAATAATTTACCATGATCTTTCTTATGTGGATGAAGATGGTATTTTTGTGCTTGTGGTATTTTTTATTTTTTATTTTGACAAATGTGCTTGTGGTATTTATATACCTTGTATTTACATTTGTATATTTAAATAATACTGATGATGATTAGTTTCTGTTTACTGATCATTGCACCATCACAATATTCATGACATCATAATTTCTTGCTTTCTTATGCGTGATAAATTTGATTTTCAAAATCGTCTCTTTCTTAAAATGCAGAAACTGAGCAGGGAGTTGCTCAAGCAATTTTAAGATCTTTTATTGACTTTACAAGGGTTCCATGGCCAAAGGTTTCTGATAATGCGAAAGACCTTGTTAAGAAGATGCTTGATCCTGACCCAAAGCGCCGGCTTACTGCACAGGAAGTGTTAGGTAATATGCAGTTCAAATAATAGAATTAGCTTAGCAATGAACAATGTTTTCTACACACAAAAAAGCTTGAAAACTGGGAACATTAACATTGCTTGATAACTAAATGCAGATCATCCATGGTTGCAGAATGCAAAGAAATCCTCCTAATGTTTCATTGGGAGAAACAGTCCGAGCCAGCAAGGCTCACACAATTTTCTGTAATGAACAAACTTAAGAAAACAGCACTGAGGGTAATGTTATCAGTAATACTTGAATATCTAATAAGAAATGTTTTCTGTAAATATTTTTCCATTTACGACCCTTTTATTTCGGTCTTTTTTATTTTATTTTCCTATATTGGACTTTTATGTGAGCAGGTGATTGCAGAGCATTTATCTGTAGAAGAAGTTGTTAGAATAAAAGAGGGATTCCGAGTGATATATACAGAAAATAAAGGCAAAATCAACATTGATGAACTACGAGTAGGGTTAAGCTAGGTCACCGAATTCCTGATGGAGATGTCCAAATACTAATGGAAGATGTGAGTATATTCCCATTATCTGGGATCTATTCTGTTTGTTCCACAGTCGATGGATGTGGAAATAAGTAGTTTGTCCAACTAACTGTCAACATGAGTATTTTTTTAATTTCATTAGTTCTATTTAACCGGTAATAGAAAGTCATCCATCTGGTCTTGAATATAAGCAATAAATAAATAAATTATACCACAAAATGAAAAAGATAAATGCATTCACCAAATTAACCTTCACTGGTTTTTGCTTCATGAAAATAAAAATTTATTGCAGTCTTGGGTTCAAAATGAAATTGATGGTATTTTAAGAATGATATCATTAAATAGGATAAAGTTAGTTTAGATTTGTTCATATCTCAAATCACTAAAATTGAATTTTTTTATGCTTATATTCGAGATATGAAGAAGCATTGTATTGATACACTATATGCCCTTTACAAGGTGTCTGCTTTTACAGGGTGAAGTCGACAAAGATGGTTACCTAGATTATGAAGAGTTTGTAGCCATTTATATTCATTTGAGAAAGATATCCTATGATGAACACTTCCTCAGAGCATTCCAATTTTTTGATAAAAACCAATCTGGTTATATTGAACTTGAGGAGTTGCATAATTCCTTAGCTGATGAGATTGATACAAACAGTGAAGAAGTCATTAATGCAATTATGCATGATATGGACAAAGATAAGATCAGTATATTTCACTTTTTGTCAAAATATACACCACTAGAAAGGCACATGTTAAGGAATCAAAATATAGAAATATTGTCTTGAAAGTGGTGTATTCAGTTCTTAGAAATTTTAAAAAATTGTTATTTTCAAAATAATATTCCTATATTTGATTCCTTAGCCTAAACCATAGTAGACTTGTTAGCGAGACCCCATTTCATTTTGCATGCATTAGGTAGATGAATTCTTTTACTCAACCTCTTCCCTCTTGGACTTGGAAAATCGTTCTTCATCTTTGAAACACTTATGTATGGTTTCTTTGTACTGGTGTTTTGTGGAGAACCCCCTGACGGACCGATCTATAAGAATTATTCTTGATCAAGATTATATTTTTAAAACAAAATTGCTTTTAGATGTTTAA

Protein sequence

>MS.gene89741.t1

MGNCCANPSSRNNKQNRKEKPGKYEQVKINNKILVILKEPTGREIELRYELGRELCRREFGKNLRKELGRGEFGITYLCKDRNTGEELACKSISKDKLRTAIDIEDVRREVEIMRHLPKHANIVSLKETYEDDDDVHLIMEHCEGRELVDRIVARGYYTEHAAASVVKSIVQIVQLKNKKETSSLKAIDFGLSIFFKPGERFNEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLSGVNPFWAETEQGVAQAILRSFIDFTRVPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLECKEILLMFHWEKQSEPARLTQFSVMNKLKKTALRGEVDKDGYLDYEEFVAIYIHLRKISYDEHFLRAFQFFDKNQSGYIELEELHNSLADEIDTNSEEVDEFFYSTSSLLDLENRSSSLKHLCMVSLYWCFVENPLTDRSIRIILDQDYIFKTKLLLDV