Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89845.t1 | GAU16599.1 | 74 | 208 | 49 | 3 | 7 | 214 | 1 | 203 | 2.50E-74 | 288.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89845.t1 | O23208 | 52.4 | 210 | 95 | 4 | 7 | 214 | 10 | 216 | 1.2e-45 | 184.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89845.t1 | A0A2Z6MKL3 | 74.0 | 208 | 49 | 3 | 7 | 214 | 1 | 203 | 1.8e-74 | 288.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene89845.t1 | TF | HB-other |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89845.t1 | MTR_5g019650 | 90.950 | 221 | 13 | 1 | 1 | 214 | 1 | 221 | 1.46e-138 | 387 |
MS.gene89845.t1 | MTR_5g019680 | 83.019 | 212 | 31 | 1 | 1 | 212 | 1 | 207 | 3.83e-121 | 342 |
MS.gene89845.t1 | MTR_4g107650 | 42.446 | 139 | 62 | 3 | 34 | 154 | 65 | 203 | 1.08e-24 | 99.4 |
MS.gene89845.t1 | MTR_6g007647 | 49.550 | 111 | 47 | 2 | 53 | 156 | 33 | 141 | 4.03e-24 | 96.3 |
MS.gene89845.t1 | MTR_6g007647 | 49.550 | 111 | 47 | 2 | 53 | 156 | 67 | 175 | 6.43e-24 | 96.7 |
MS.gene89845.t1 | MTR_7g103340 | 36.747 | 166 | 87 | 3 | 53 | 204 | 63 | 224 | 2.94e-23 | 93.6 |
MS.gene89845.t1 | MTR_3g086790 | 62.162 | 74 | 28 | 0 | 53 | 126 | 60 | 133 | 1.13e-22 | 93.6 |
MS.gene89845.t1 | MTR_8g089895 | 62.162 | 74 | 28 | 0 | 53 | 126 | 54 | 127 | 4.36e-22 | 92.0 |
MS.gene89845.t1 | MTR_8g469430 | 47.664 | 107 | 49 | 1 | 53 | 152 | 89 | 195 | 3.44e-21 | 89.4 |
MS.gene89845.t1 | MTR_5g038280 | 63.380 | 71 | 26 | 0 | 53 | 123 | 87 | 157 | 4.68e-21 | 89.4 |
MS.gene89845.t1 | MTR_6g011610 | 52.525 | 99 | 45 | 1 | 44 | 142 | 89 | 185 | 6.17e-21 | 88.2 |
MS.gene89845.t1 | MTR_6g011610 | 52.525 | 99 | 45 | 1 | 44 | 142 | 70 | 166 | 7.38e-21 | 87.8 |
MS.gene89845.t1 | MTR_5g039000 | 47.321 | 112 | 52 | 2 | 48 | 159 | 74 | 178 | 7.49e-21 | 88.2 |
MS.gene89845.t1 | MTR_3g092150 | 41.135 | 141 | 66 | 3 | 55 | 195 | 40 | 163 | 1.86e-20 | 86.7 |
MS.gene89845.t1 | MTR_8g468210 | 45.794 | 107 | 53 | 1 | 53 | 159 | 77 | 178 | 2.02e-20 | 87.0 |
MS.gene89845.t1 | MTR_1g061660 | 46.875 | 96 | 51 | 0 | 49 | 144 | 55 | 150 | 4.68e-20 | 85.1 |
MS.gene89845.t1 | MTR_3g080100 | 47.000 | 100 | 53 | 0 | 45 | 144 | 12 | 111 | 5.24e-19 | 82.0 |
MS.gene89845.t1 | MTR_3g080100 | 47.000 | 100 | 53 | 0 | 45 | 144 | 51 | 150 | 7.71e-19 | 82.4 |
MS.gene89845.t1 | MTR_8g026960 | 44.954 | 109 | 53 | 2 | 57 | 163 | 38 | 141 | 1.85e-18 | 80.9 |
MS.gene89845.t1 | MTR_7g010020 | 47.778 | 90 | 47 | 0 | 53 | 142 | 80 | 169 | 1.51e-15 | 73.6 |
MS.gene89845.t1 | MTR_4g100550 | 40.367 | 109 | 60 | 1 | 39 | 142 | 106 | 214 | 1.77e-13 | 68.2 |
MS.gene89845.t1 | MTR_4g084750 | 52.239 | 67 | 32 | 0 | 53 | 119 | 65 | 131 | 2.80e-13 | 66.2 |
MS.gene89845.t1 | MTR_4g097600 | 41.748 | 103 | 55 | 1 | 45 | 142 | 119 | 221 | 1.40e-12 | 65.5 |
MS.gene89845.t1 | MTR_2g061030 | 37.302 | 126 | 73 | 2 | 53 | 172 | 200 | 325 | 1.40e-12 | 65.9 |
MS.gene89845.t1 | MTR_8g006705 | 43.158 | 95 | 49 | 1 | 53 | 142 | 146 | 240 | 2.73e-12 | 64.7 |
MS.gene89845.t1 | MTR_7g093430 | 37.500 | 112 | 65 | 1 | 34 | 140 | 141 | 252 | 1.08e-11 | 63.2 |
MS.gene89845.t1 | MTR_2g038625 | 35.385 | 130 | 63 | 2 | 53 | 182 | 82 | 190 | 3.32e-11 | 60.8 |
MS.gene89845.t1 | MTR_2g038580 | 35.385 | 130 | 63 | 2 | 53 | 182 | 82 | 190 | 3.32e-11 | 60.8 |
MS.gene89845.t1 | MTR_1g054285 | 41.237 | 97 | 52 | 1 | 49 | 140 | 150 | 246 | 4.49e-11 | 61.2 |
MS.gene89845.t1 | MTR_1g017090 | 47.887 | 71 | 37 | 0 | 53 | 123 | 130 | 200 | 6.88e-11 | 60.8 |
MS.gene89845.t1 | MTR_5g014890 | 42.000 | 100 | 53 | 1 | 48 | 142 | 118 | 217 | 8.18e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89845.t1 | AT4G36740 | 54.976 | 211 | 89 | 5 | 7 | 214 | 10 | 217 | 6.37e-67 | 205 |
MS.gene89845.t1 | AT4G36740 | 54.286 | 210 | 91 | 4 | 7 | 214 | 10 | 216 | 3.10e-66 | 203 |
MS.gene89845.t1 | AT2G18550 | 48.000 | 225 | 101 | 7 | 1 | 214 | 1 | 220 | 2.48e-63 | 196 |
MS.gene89845.t1 | AT5G66700 | 47.111 | 225 | 99 | 6 | 5 | 214 | 9 | 228 | 3.29e-48 | 158 |
MS.gene89845.t1 | AT3G01470 | 52.577 | 97 | 39 | 1 | 53 | 142 | 68 | 164 | 5.92e-25 | 99.0 |
MS.gene89845.t1 | AT1G69780 | 40.000 | 155 | 76 | 3 | 2 | 142 | 23 | 174 | 6.24e-23 | 94.0 |
MS.gene89845.t1 | AT4G40060 | 59.259 | 81 | 33 | 0 | 43 | 123 | 49 | 129 | 7.29e-23 | 94.0 |
MS.gene89845.t1 | AT2G22430 | 63.158 | 76 | 28 | 0 | 48 | 123 | 57 | 132 | 1.46e-22 | 93.6 |
MS.gene89845.t1 | AT5G65310 | 57.500 | 80 | 34 | 0 | 44 | 123 | 45 | 124 | 4.62e-22 | 91.7 |
MS.gene89845.t1 | AT5G65310 | 57.500 | 80 | 34 | 0 | 44 | 123 | 63 | 142 | 4.92e-22 | 92.0 |
MS.gene89845.t1 | AT5G03790 | 49.462 | 93 | 47 | 0 | 46 | 138 | 70 | 162 | 9.55e-22 | 89.7 |
MS.gene89845.t1 | AT5G03790 | 41.667 | 120 | 70 | 0 | 19 | 138 | 43 | 162 | 1.58e-21 | 88.2 |
MS.gene89845.t1 | AT2G46680 | 41.406 | 128 | 68 | 1 | 52 | 179 | 31 | 151 | 2.14e-21 | 89.4 |
MS.gene89845.t1 | AT2G46680 | 40.602 | 133 | 60 | 2 | 52 | 179 | 31 | 149 | 2.46e-20 | 86.3 |
MS.gene89845.t1 | AT1G26960 | 41.007 | 139 | 72 | 2 | 53 | 186 | 71 | 204 | 3.13e-20 | 86.3 |
MS.gene89845.t1 | AT2G36610 | 45.192 | 104 | 49 | 2 | 49 | 144 | 67 | 170 | 2.75e-19 | 82.0 |
MS.gene89845.t1 | AT5G15150 | 42.373 | 118 | 68 | 0 | 53 | 170 | 115 | 232 | 1.07e-18 | 82.8 |
MS.gene89845.t1 | AT1G27045 | 41.221 | 131 | 64 | 2 | 50 | 167 | 14 | 144 | 9.85e-18 | 77.8 |
MS.gene89845.t1 | AT3G01220 | 53.247 | 77 | 34 | 1 | 43 | 119 | 79 | 153 | 1.00e-17 | 79.7 |
MS.gene89845.t1 | AT1G27045 | 41.221 | 131 | 64 | 2 | 50 | 167 | 65 | 195 | 1.17e-17 | 78.6 |
MS.gene89845.t1 | AT1G27045 | 41.221 | 131 | 64 | 2 | 50 | 167 | 22 | 152 | 1.24e-17 | 77.8 |
MS.gene89845.t1 | AT1G27045 | 41.221 | 131 | 64 | 2 | 50 | 167 | 22 | 152 | 1.24e-17 | 77.8 |
MS.gene89845.t1 | AT5G53980 | 37.063 | 143 | 71 | 3 | 52 | 194 | 10 | 133 | 1.40e-17 | 76.6 |
MS.gene89845.t1 | AT3G61890 | 43.434 | 99 | 56 | 0 | 56 | 154 | 33 | 131 | 1.98e-17 | 78.2 |
MS.gene89845.t1 | AT1G27045 | 46.237 | 93 | 43 | 1 | 50 | 135 | 65 | 157 | 4.71e-16 | 74.7 |
MS.gene89845.t1 | AT2G22800 | 45.161 | 93 | 46 | 2 | 53 | 140 | 113 | 205 | 4.70e-12 | 63.9 |
MS.gene89845.t1 | AT2G01430 | 34.559 | 136 | 74 | 2 | 45 | 179 | 131 | 252 | 6.62e-12 | 63.5 |
MS.gene89845.t1 | AT1G70920 | 46.835 | 79 | 42 | 0 | 41 | 119 | 27 | 105 | 1.15e-11 | 61.6 |
MS.gene89845.t1 | AT4G16780 | 40.385 | 104 | 53 | 2 | 44 | 142 | 124 | 223 | 1.19e-11 | 62.8 |
MS.gene89845.t1 | AT1G70920 | 46.835 | 79 | 42 | 0 | 41 | 119 | 57 | 135 | 1.56e-11 | 61.6 |
MS.gene89845.t1 | AT4G37790 | 43.011 | 93 | 48 | 1 | 53 | 140 | 126 | 218 | 3.39e-11 | 61.6 |
MS.gene89845.t1 | AT5G06710 | 39.796 | 98 | 59 | 0 | 41 | 138 | 178 | 275 | 7.68e-11 | 60.8 |
MS.gene89845.t1 | AT4G17460 | 39.535 | 129 | 70 | 4 | 45 | 165 | 126 | 254 | 8.04e-11 | 60.5 |
Find 42 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCACCTAGCCCTTCGATTC+TGG | 0.220585 | 5.3:-11279204 | None:intergenic |
TAAGCATCATTTGATCTTGA+TGG | 0.301728 | 5.3:-11278825 | None:intergenic |
GAACCAAACTGCAACTTGTC+TGG | 0.307826 | 5.3:-11279182 | None:intergenic |
CTACGCTTGCGTCTTGGCTT+TGG | 0.328958 | 5.3:-11279001 | None:intergenic |
TGATGAACAAGTGAATATTT+TGG | 0.337098 | 5.3:+11279084 | MS.gene89845:CDS |
TTGTAGTAACATGTTTCATT+AGG | 0.345702 | 5.3:-11279982 | None:intergenic |
AAGGAGACACTTCTCGAGTA+TGG | 0.353926 | 5.3:-11279281 | None:intergenic |
CTGCTTGTTACCCTTTCAAT+TGG | 0.372213 | 5.3:-11279853 | None:intergenic |
ATCCCAGACAAGTTGCAGTT+TGG | 0.404850 | 5.3:+11279179 | MS.gene89845:CDS |
TTCTTACTACGCTTGCGTCT+TGG | 0.426044 | 5.3:-11279007 | None:intergenic |
AGAGGTATACCTTGGTTTCA+AGG | 0.439510 | 5.3:-11279300 | None:intergenic |
CCAAATTCACCAAGAAAAGT+AGG | 0.443141 | 5.3:-11279922 | None:intergenic |
GATAGGCTTGCAATGGAGCT+TGG | 0.487004 | 5.3:+11279151 | MS.gene89845:CDS |
TAAACTTGAGTCAGAGAAGA+AGG | 0.499532 | 5.3:+11279129 | MS.gene89845:CDS |
GTCTCAGTCAGTGGAAGTTG+TGG | 0.499926 | 5.3:+11279897 | MS.gene89845:CDS |
AACCAAACTGCAACTTGTCT+GGG | 0.501567 | 5.3:-11279181 | None:intergenic |
CAGTTTGGTTCCAGAATCGA+AGG | 0.504708 | 5.3:+11279194 | MS.gene89845:CDS |
GGTGAATTTGGTGTTGATAA+CGG | 0.514478 | 5.3:+11279934 | MS.gene89845:CDS |
GGTTCCAGAATCGAAGGGCT+AGG | 0.526167 | 5.3:+11279200 | MS.gene89845:CDS |
ATTTGTGTGTATTCACAAGC+GGG | 0.527508 | 5.3:-11278862 | None:intergenic |
TTGAGTCAGAGAAGAAGGAT+AGG | 0.537241 | 5.3:+11279134 | MS.gene89845:CDS |
GCTTCGAGAGCCAATTGAAA+GGG | 0.560533 | 5.3:+11279843 | MS.gene89845:CDS |
GTTACTACAATGGCATGGAA+TGG | 0.566673 | 5.3:+11279995 | MS.gene89845:CDS |
TTTGTAGGTGTTGAAGCTAA+CGG | 0.568585 | 5.3:+11279786 | MS.gene89845:intron |
GGCTTCGAGAGCCAATTGAA+AGG | 0.569118 | 5.3:+11279842 | MS.gene89845:CDS |
AATCTGAGAAAGAAAATCAA+AGG | 0.580369 | 5.3:+11279821 | MS.gene89845:CDS |
AACTTCCACTGACTGAGACA+TGG | 0.581765 | 5.3:-11279893 | None:intergenic |
TTCATCCATGTCTCAGTCAG+TGG | 0.582296 | 5.3:+11279888 | MS.gene89845:CDS |
GAAGAAGGATAGGCTTGCAA+TGG | 0.584642 | 5.3:+11279144 | MS.gene89845:CDS |
AATGAAACATGTTACTACAA+TGG | 0.596613 | 5.3:+11279985 | MS.gene89845:CDS |
CAAATTCACCAAGAAAAGTA+GGG | 0.602090 | 5.3:-11279921 | None:intergenic |
GATTTGTGTGTATTCACAAG+CGG | 0.602684 | 5.3:-11278863 | None:intergenic |
CGTAGTAAGAAGAACAAAGG+TGG | 0.606299 | 5.3:+11279019 | MS.gene89845:CDS |
AAAGGTGGAGAAAACAGTGC+TGG | 0.615811 | 5.3:+11279034 | MS.gene89845:CDS |
AACATGTTACTACAATGGCA+TGG | 0.616964 | 5.3:+11279990 | MS.gene89845:CDS |
GAGACACTTCTCGAGTATGG+TGG | 0.632339 | 5.3:-11279278 | None:intergenic |
GAAGTGTCTCCTTGAAACCA+AGG | 0.653831 | 5.3:+11279291 | MS.gene89845:CDS |
TCCAGAATCGAAGGGCTAGG+TGG | 0.655135 | 5.3:+11279203 | MS.gene89845:CDS |
ACACAAATCATTTCTCAACA+AGG | 0.663256 | 5.3:+11278877 | MS.gene89845:CDS |
AAGCGTAGTAAGAAGAACAA+AGG | 0.668285 | 5.3:+11279016 | MS.gene89845:CDS |
AGTTTGGTTCCAGAATCGAA+GGG | 0.690392 | 5.3:+11279195 | MS.gene89845:CDS |
TTTGTGTGTATTCACAAGCG+GGG | 0.712271 | 5.3:-11278861 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTAAAATTTAAAATCAG+TGG | + | chr5.3:11279403-11279422 | MS.gene89845:intron | 10.0% |
!!! | TTATTTTATTCACATATTTT+GGG | + | chr5.3:11279588-11279607 | MS.gene89845:intron | 10.0% |
!!! | TTTATTTTATTCACATATTT+TGG | + | chr5.3:11279587-11279606 | MS.gene89845:intron | 10.0% |
!! | GAACATTAAATAATATTGTA+CGG | - | chr5.3:11279757-11279776 | None:intergenic | 15.0% |
!!! | ATTTTTGGTATGTTTTTTTA+GGG | + | chr5.3:11278969-11278988 | MS.gene89845:intron | 15.0% |
!!! | TATTTTTGGTATGTTTTTTT+AGG | + | chr5.3:11278968-11278987 | MS.gene89845:intron | 15.0% |
!! | ATATTGTACGGAAATATATA+TGG | - | chr5.3:11279745-11279764 | None:intergenic | 20.0% |
!!! | AAAATTTAAAATCAGTGGAT+TGG | + | chr5.3:11279408-11279427 | MS.gene89845:intron | 20.0% |
!!! | AATATATATGGTGACATTTT+TGG | - | chr5.3:11279733-11279752 | None:intergenic | 20.0% |
!!! | ATATAGTCTTGTAATATTGT+TGG | - | chr5.3:11279478-11279497 | None:intergenic | 20.0% |
!!! | TTTTTGGTATGTTTTTTTAG+GGG | + | chr5.3:11278970-11278989 | MS.gene89845:intron | 20.0% |
! | AATATAAAAGAGGAAGAAAG+AGG | - | chr5.3:11279321-11279340 | None:intergenic | 25.0% |
! | AATCTGAGAAAGAAAATCAA+AGG | + | chr5.3:11279821-11279840 | MS.gene89845:CDS | 25.0% |
! | AATGAAACATGTTACTACAA+TGG | + | chr5.3:11279985-11280004 | MS.gene89845:CDS | 25.0% |
! | CATCATGGTGAATAAAATAA+TGG | - | chr5.3:11279654-11279673 | None:intergenic | 25.0% |
! | TATAAGCATTTACAACATCA+TGG | - | chr5.3:11279669-11279688 | None:intergenic | 25.0% |
! | TTGTAGTAACATGTTTCATT+AGG | - | chr5.3:11279985-11280004 | None:intergenic | 25.0% |
!! | TGATGAACAAGTGAATATTT+TGG | + | chr5.3:11279084-11279103 | MS.gene89845:CDS | 25.0% |
!! | TTTAATCAAAAGCACAAACA+AGG | + | chr5.3:11279703-11279722 | MS.gene89845:intron | 25.0% |
!!! | AATATTTTGGAGCAAAACTT+TGG | + | chr5.3:11279097-11279116 | MS.gene89845:CDS | 25.0% |
AACACTAGTAACGTCAATTT+AGG | + | chr5.3:11279524-11279543 | MS.gene89845:intron | 30.0% | |
ACACAAATCATTTCTCAACA+AGG | + | chr5.3:11278877-11278896 | MS.gene89845:CDS | 30.0% | |
ACACTAGTAACGTCAATTTA+GGG | + | chr5.3:11279525-11279544 | MS.gene89845:intron | 30.0% | |
ATGTTCCATACATTGTTTGT+AGG | + | chr5.3:11279771-11279790 | MS.gene89845:intron | 30.0% | |
CAAATTCACCAAGAAAAGTA+GGG | - | chr5.3:11279924-11279943 | None:intergenic | 30.0% | |
CTGGTGAATTAAACAAAAAG+AGG | + | chr5.3:11279053-11279072 | MS.gene89845:CDS | 30.0% | |
TAAGCATCATTTGATCTTGA+TGG | - | chr5.3:11278828-11278847 | None:intergenic | 30.0% | |
AACATGTTACTACAATGGCA+TGG | + | chr5.3:11279990-11280009 | MS.gene89845:CDS | 35.0% | |
AAGCGTAGTAAGAAGAACAA+AGG | + | chr5.3:11279016-11279035 | MS.gene89845:CDS | 35.0% | |
ATTTGTGTGTATTCACAAGC+GGG | - | chr5.3:11278865-11278884 | None:intergenic | 35.0% | |
CAACACCTACAAACAATGTA+TGG | - | chr5.3:11279779-11279798 | None:intergenic | 35.0% | |
CCAAATTCACCAAGAAAAGT+AGG | - | chr5.3:11279925-11279944 | None:intergenic | 35.0% | |
GATTTGTGTGTATTCACAAG+CGG | - | chr5.3:11278866-11278885 | None:intergenic | 35.0% | |
TAAACTTGAGTCAGAGAAGA+AGG | + | chr5.3:11279129-11279148 | MS.gene89845:CDS | 35.0% | |
!! | CCTACTTTTCTTGGTGAATT+TGG | + | chr5.3:11279922-11279941 | MS.gene89845:CDS | 35.0% |
!! | GGTGAATTTGGTGTTGATAA+CGG | + | chr5.3:11279934-11279953 | MS.gene89845:CDS | 35.0% |
!! | TGTTACTTTAGCTCTACATG+TGG | + | chr5.3:11279622-11279641 | MS.gene89845:intron | 35.0% |
!! | TTTGTAGGTGTTGAAGCTAA+CGG | + | chr5.3:11279786-11279805 | MS.gene89845:intron | 35.0% |
AACCAAACTGCAACTTGTCT+GGG | - | chr5.3:11279184-11279203 | None:intergenic | 40.0% | |
ATGCTACCATGTTTCTTCTC+TGG | + | chr5.3:11279553-11279572 | MS.gene89845:intron | 40.0% | |
CGTAGTAAGAAGAACAAAGG+TGG | + | chr5.3:11279019-11279038 | MS.gene89845:CDS | 40.0% | |
GTTACTACAATGGCATGGAA+TGG | + | chr5.3:11279995-11280014 | MS.gene89845:CDS | 40.0% | |
TTGAGTCAGAGAAGAAGGAT+AGG | + | chr5.3:11279134-11279153 | MS.gene89845:CDS | 40.0% | |
TTTGTGTGTATTCACAAGCG+GGG | - | chr5.3:11278864-11278883 | None:intergenic | 40.0% | |
! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5.3:11279303-11279322 | None:intergenic | 40.0% |
! | AGGAAGAAAGAGGTATACCT+TGG | - | chr5.3:11279311-11279330 | None:intergenic | 40.0% |
! | AGTTTGGTTCCAGAATCGAA+GGG | + | chr5.3:11279195-11279214 | MS.gene89845:CDS | 40.0% |
! | CTGCTTGTTACCCTTTCAAT+TGG | - | chr5.3:11279856-11279875 | None:intergenic | 40.0% |
AAAGGTGGAGAAAACAGTGC+TGG | + | chr5.3:11279034-11279053 | MS.gene89845:CDS | 45.0% | |
AAGGAGACACTTCTCGAGTA+TGG | - | chr5.3:11279284-11279303 | None:intergenic | 45.0% | |
AGACCACCAGAGAAGAAACA+TGG | - | chr5.3:11279562-11279581 | None:intergenic | 45.0% | |
ATCCCAGACAAGTTGCAGTT+TGG | + | chr5.3:11279179-11279198 | MS.gene89845:CDS | 45.0% | |
CTACCATGTTTCTTCTCTGG+TGG | + | chr5.3:11279556-11279575 | MS.gene89845:intron | 45.0% | |
GAACCAAACTGCAACTTGTC+TGG | - | chr5.3:11279185-11279204 | None:intergenic | 45.0% | |
GAAGAAGGATAGGCTTGCAA+TGG | + | chr5.3:11279144-11279163 | MS.gene89845:CDS | 45.0% | |
GCTTCGAGAGCCAATTGAAA+GGG | + | chr5.3:11279843-11279862 | MS.gene89845:CDS | 45.0% | |
TTCATCCATGTCTCAGTCAG+TGG | + | chr5.3:11279888-11279907 | MS.gene89845:CDS | 45.0% | |
TTCTTACTACGCTTGCGTCT+TGG | - | chr5.3:11279010-11279029 | None:intergenic | 45.0% | |
! | AACTTCCACTGACTGAGACA+TGG | - | chr5.3:11279896-11279915 | None:intergenic | 45.0% |
! | CAGTTTGGTTCCAGAATCGA+AGG | + | chr5.3:11279194-11279213 | MS.gene89845:CDS | 45.0% |
! | GAAGTGTCTCCTTGAAACCA+AGG | + | chr5.3:11279291-11279310 | MS.gene89845:CDS | 45.0% |
!! | GTTGTGGACCCTACTTTTCT+TGG | + | chr5.3:11279913-11279932 | MS.gene89845:CDS | 45.0% |
!! | AATAATAAATAATATAAAAG+AGG | - | chr5.3:11279331-11279350 | None:intergenic | 5.0% |
!!! | ATAGTTAATTATAATATTTT+TGG | + | chr5.3:11278954-11278973 | MS.gene89845:intron | 5.0% |
GAGACACTTCTCGAGTATGG+TGG | - | chr5.3:11279281-11279300 | None:intergenic | 50.0% | |
GATAGGCTTGCAATGGAGCT+TGG | + | chr5.3:11279151-11279170 | MS.gene89845:CDS | 50.0% | |
GGCTTCGAGAGCCAATTGAA+AGG | + | chr5.3:11279842-11279861 | MS.gene89845:CDS | 50.0% | |
GTCTCAGTCAGTGGAAGTTG+TGG | + | chr5.3:11279897-11279916 | MS.gene89845:CDS | 50.0% | |
CTACGCTTGCGTCTTGGCTT+TGG | - | chr5.3:11279004-11279023 | None:intergenic | 55.0% | |
GGTTCCAGAATCGAAGGGCT+AGG | + | chr5.3:11279200-11279219 | MS.gene89845:CDS | 55.0% | |
TCCACCTAGCCCTTCGATTC+TGG | - | chr5.3:11279207-11279226 | None:intergenic | 55.0% | |
TCCAGAATCGAAGGGCTAGG+TGG | + | chr5.3:11279203-11279222 | MS.gene89845:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 11278820 | 11280035 | 11278820 | ID=MS.gene89845 |
chr5.3 | mRNA | 11278820 | 11280035 | 11278820 | ID=MS.gene89845.t1;Parent=MS.gene89845 |
chr5.3 | exon | 11278820 | 11278898 | 11278820 | ID=MS.gene89845.t1.exon1;Parent=MS.gene89845.t1 |
chr5.3 | CDS | 11278820 | 11278898 | 11278820 | ID=cds.MS.gene89845.t1;Parent=MS.gene89845.t1 |
chr5.3 | exon | 11278990 | 11279312 | 11278990 | ID=MS.gene89845.t1.exon2;Parent=MS.gene89845.t1 |
chr5.3 | CDS | 11278990 | 11279312 | 11278990 | ID=cds.MS.gene89845.t1;Parent=MS.gene89845.t1 |
chr5.3 | exon | 11279793 | 11280035 | 11279793 | ID=MS.gene89845.t1.exon3;Parent=MS.gene89845.t1 |
chr5.3 | CDS | 11279793 | 11280035 | 11279793 | ID=cds.MS.gene89845.t1;Parent=MS.gene89845.t1 |
Gene Sequence |
Protein sequence |