Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89999.t1 | TKY57836.1 | 34.9 | 249 | 141 | 8 | 3 | 231 | 8 | 255 | 3.20E-22 | 115.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89999.t1 | Q9FFI5 | 30.2 | 139 | 76 | 7 | 4 | 132 | 6 | 133 | 2.7e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89999.t1 | A0A4D6MC66 | 33.0 | 264 | 143 | 7 | 2 | 231 | 7 | 270 | 3.7e-20 | 108.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene89999.t1 | TF | NAC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89999.t1 | MTR_2g080010 | 32.484 | 157 | 86 | 5 | 4 | 148 | 15 | 163 | 7.03e-14 | 70.1 |
| MS.gene89999.t1 | MTR_8g059170 | 33.108 | 148 | 80 | 6 | 4 | 143 | 14 | 150 | 9.32e-13 | 66.6 |
| MS.gene89999.t1 | MTR_4g094302 | 32.558 | 129 | 78 | 6 | 4 | 132 | 11 | 130 | 1.91e-12 | 64.3 |
| MS.gene89999.t1 | MTR_8g094580 | 35.507 | 138 | 71 | 6 | 4 | 134 | 7 | 133 | 2.71e-12 | 65.1 |
| MS.gene89999.t1 | MTR_4g134460 | 34.532 | 139 | 73 | 6 | 2 | 132 | 52 | 180 | 3.04e-12 | 65.5 |
| MS.gene89999.t1 | MTR_4g094302 | 32.558 | 129 | 78 | 6 | 4 | 132 | 11 | 130 | 3.62e-12 | 62.8 |
| MS.gene89999.t1 | MTR_3g096920 | 31.884 | 138 | 76 | 6 | 4 | 134 | 7 | 133 | 3.67e-12 | 64.7 |
| MS.gene89999.t1 | MTR_3g096920 | 31.884 | 138 | 76 | 6 | 4 | 134 | 7 | 133 | 6.79e-12 | 64.3 |
| MS.gene89999.t1 | MTR_2g079990 | 32.667 | 150 | 79 | 7 | 4 | 142 | 16 | 154 | 1.26e-11 | 63.5 |
| MS.gene89999.t1 | MTR_7g105170 | 29.286 | 140 | 89 | 5 | 1 | 133 | 1 | 137 | 2.08e-11 | 62.4 |
| MS.gene89999.t1 | MTR_2g079990 | 32.394 | 142 | 77 | 6 | 4 | 137 | 16 | 146 | 3.74e-11 | 62.4 |
| MS.gene89999.t1 | MTR_3g088110 | 32.609 | 138 | 75 | 5 | 4 | 134 | 7 | 133 | 4.68e-11 | 61.6 |
| MS.gene89999.t1 | MTR_4g101680 | 30.282 | 142 | 87 | 4 | 4 | 139 | 7 | 142 | 9.46e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89999.t1 | AT3G15500 | 33.571 | 140 | 70 | 6 | 4 | 133 | 14 | 140 | 5.33e-12 | 64.7 |
| MS.gene89999.t1 | AT4G27410 | 30.986 | 142 | 79 | 6 | 4 | 137 | 14 | 144 | 7.75e-12 | 63.9 |
| MS.gene89999.t1 | AT1G52890 | 33.571 | 140 | 70 | 6 | 4 | 133 | 14 | 140 | 9.76e-12 | 63.9 |
| MS.gene89999.t1 | AT1G01720 | 33.333 | 138 | 74 | 5 | 4 | 134 | 7 | 133 | 1.02e-11 | 63.5 |
| MS.gene89999.t1 | AT1G69490 | 30.282 | 142 | 82 | 5 | 4 | 138 | 9 | 140 | 2.03e-11 | 62.4 |
Find 54 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCATTGTAAAACTGGATTT+TGG | 0.171591 | 1.4:-40173012 | MS.gene89999:CDS |
| ATGGATCTGGACTCTAAATT+TGG | 0.229648 | 1.4:-40172686 | MS.gene89999:CDS |
| GCAACTTAAGCATGCACTTC+TGG | 0.244759 | 1.4:-40171605 | MS.gene89999:CDS |
| CCATGGTTCTGACCTGATTA+AGG | 0.246294 | 1.4:-40173146 | MS.gene89999:CDS |
| AGCTCCAGTAGTAATGAATT+TGG | 0.250625 | 1.4:+40172973 | None:intergenic |
| CCTTCTCGGCTCATCAGTTT+TGG | 0.278275 | 1.4:+40173033 | None:intergenic |
| CAAGGAACTCAGCAACTTAA+TGG | 0.281782 | 1.4:-40172602 | MS.gene89999:CDS |
| CCGAGAAGGCATTGTAAAAC+TGG | 0.358344 | 1.4:-40173019 | MS.gene89999:CDS |
| CCTTGTGTCAGGGAAGAAAA+AGG | 0.365714 | 1.4:+40173075 | None:intergenic |
| CATCAGCAGCATCACCTTCA+TGG | 0.367615 | 1.4:+40172648 | None:intergenic |
| TGGATCTGGACTCTAAATTT+GGG | 0.368829 | 1.4:-40172685 | MS.gene89999:CDS |
| AAGGAACTCAGCAACTTAAT+GGG | 0.380650 | 1.4:-40172601 | MS.gene89999:CDS |
| CAGCAAAACTCCCTTGTGTC+AGG | 0.396056 | 1.4:+40173064 | None:intergenic |
| ACAGGTTCAGCTCCTTAATC+AGG | 0.411998 | 1.4:+40173134 | None:intergenic |
| AGGTGATGCATCACATTTCA+TGG | 0.429555 | 1.4:-40172546 | MS.gene89999:CDS |
| CTGCTCTAGAGGGATGGATC+TGG | 0.463977 | 1.4:-40172699 | MS.gene89999:intron |
| GCTGCCAAATTCATTACTAC+TGG | 0.474236 | 1.4:-40172977 | MS.gene89999:CDS |
| GTAATTCAAACAGATCATAT+TGG | 0.490433 | 1.4:+40173110 | None:intergenic |
| CAAACAGATCATATTGGTAC+AGG | 0.493545 | 1.4:+40173116 | None:intergenic |
| CTCAGCAACTTAATGGGGAT+GGG | 0.495888 | 1.4:-40172595 | MS.gene89999:CDS |
| CTAACAAGGATTTCAACAAA+AGG | 0.498510 | 1.4:+40173211 | None:intergenic |
| CCACATGGAAGCTATGACGC+CGG | 0.501975 | 1.4:-40171629 | MS.gene89999:CDS |
| TGTTTGAATTACATCTTGCT+CGG | 0.510719 | 1.4:-40173099 | MS.gene89999:CDS |
| TAACAAGGATTTCAACAAAA+GGG | 0.527161 | 1.4:+40173212 | None:intergenic |
| GATTTGATTCCACCTGGTGT+TGG | 0.528465 | 1.4:-40173241 | MS.gene89999:CDS |
| GAAGAGCTTCAGAATTTCCA+TGG | 0.531405 | 1.4:-40173163 | MS.gene89999:CDS |
| TCTAATGACAAGGCAGATCA+AGG | 0.532940 | 1.4:-40172620 | MS.gene89999:CDS |
| GACTATGTACGAGTACACTT+TGG | 0.539045 | 1.4:-40172870 | MS.gene89999:CDS |
| GGCTACTCAAGCCACCCCTC+CGG | 0.542119 | 1.4:-40172525 | MS.gene89999:intron |
| CGGCGTCATAGCTTCCATGT+GGG | 0.542219 | 1.4:+40171630 | None:intergenic |
| TGGCAAGGTAGTGGCTAACA+AGG | 0.543695 | 1.4:+40173197 | None:intergenic |
| TCAGCAACTTAATGGGGATG+GGG | 0.547556 | 1.4:-40172594 | MS.gene89999:CDS |
| ACTCAGCAACTTAATGGGGA+TGG | 0.550313 | 1.4:-40172596 | MS.gene89999:CDS |
| ACCTTCATGGACATCAGATA+AGG | 0.550820 | 1.4:+40172661 | None:intergenic |
| AAAACGCGATCAAAACAAGC+TGG | 0.553402 | 1.4:-40172892 | MS.gene89999:CDS |
| AGTGCATGCTTAAGTTGCTC+CGG | 0.554035 | 1.4:+40171610 | None:intergenic |
| GATGGGGCTAGTTCTAATGC+TGG | 0.555011 | 1.4:-40172578 | MS.gene89999:CDS |
| CCAAAACTGATGAGCCGAGA+AGG | 0.561587 | 1.4:-40173033 | MS.gene89999:CDS |
| AGCAAAACTCCCTTGTGTCA+GGG | 0.570346 | 1.4:+40173065 | None:intergenic |
| AAAGGGACGAAGCCAACACC+AGG | 0.571395 | 1.4:+40173229 | None:intergenic |
| TGACTGTGTTGTGCCCCACA+TGG | 0.586101 | 1.4:-40171644 | MS.gene89999:CDS |
| TCTAATGCTGGTGCTGAGCA+AGG | 0.591618 | 1.4:-40172566 | MS.gene89999:CDS |
| GGCGTCATAGCTTCCATGTG+GGG | 0.598723 | 1.4:+40171631 | None:intergenic |
| TACTGGAGCTGAAGACGTGT+TGG | 0.598882 | 1.4:-40172960 | MS.gene89999:CDS |
| CCGGCGTCATAGCTTCCATG+TGG | 0.599225 | 1.4:+40171629 | None:intergenic |
| TGGAGCTGAAGACGTGTTGG+TGG | 0.601995 | 1.4:-40172957 | MS.gene89999:CDS |
| CCTTAATCAGGTCAGAACCA+TGG | 0.626777 | 1.4:+40173146 | None:intergenic |
| GCCTTATCTGATGTCCATGA+AGG | 0.635410 | 1.4:-40172662 | MS.gene89999:CDS |
| AGGAACTCAGCAACTTAATG+GGG | 0.654737 | 1.4:-40172600 | MS.gene89999:CDS |
| GCAATGGATTTGATTCCACC+TGG | 0.660002 | 1.4:-40173247 | MS.gene89999:CDS |
| GGGACGAAGCCAACACCAGG+TGG | 0.664124 | 1.4:+40173232 | None:intergenic |
| GGATCTGGACTCTAAATTTG+GGG | 0.668923 | 1.4:-40172684 | MS.gene89999:CDS |
| TGATGACGACTCTAATGACA+AGG | 0.686779 | 1.4:-40172630 | MS.gene89999:CDS |
| GGAGCTGAAGACGTGTTGGT+GGG | 0.708570 | 1.4:-40172956 | MS.gene89999:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGCTTAAAGAAATATAAAA+AGG | + | chr1.4:40172928-40172947 | None:intergenic | 15.0% |
| !! | TTTAATATAAATAATTGTGC+AGG | - | chr1.4:40172082-40172101 | MS.gene89999:intron | 15.0% |
| !! | AAAATATTTCCATCATATGT+GGG | - | chr1.4:40172485-40172504 | MS.gene89999:intron | 20.0% |
| !! | TAAAATATTTCCATCATATG+TGG | - | chr1.4:40172484-40172503 | MS.gene89999:intron | 20.0% |
| !! | TATTCAAAACCTTTATGTAT+TGG | - | chr1.4:40172533-40172552 | MS.gene89999:CDS | 20.0% |
| !! | TCGATGATTAATTTATGTAT+TGG | - | chr1.4:40172043-40172062 | MS.gene89999:intron | 20.0% |
| !!! | ATATTTCTTTAAGCTTTTTG+TGG | - | chr1.4:40172932-40172951 | MS.gene89999:CDS | 20.0% |
| !!! | CAAACTGAAATATATTTTAC+CGG | + | chr1.4:40172329-40172348 | None:intergenic | 20.0% |
| !!! | CATAATTTTTGATACAATTG+TGG | + | chr1.4:40172648-40172667 | None:intergenic | 20.0% |
| !!! | TTTTTCATGTAATTTTATGC+TGG | - | chr1.4:40173087-40173106 | MS.gene89999:CDS | 20.0% |
| ! | ATCGATAAAATAACGAACAT+AGG | + | chr1.4:40172028-40172047 | None:intergenic | 25.0% |
| ! | CATAAATAATCCAAACACAA+TGG | + | chr1.4:40172594-40172613 | None:intergenic | 25.0% |
| ! | CCAAAATTACCAATACATAA+AGG | + | chr1.4:40172545-40172564 | None:intergenic | 25.0% |
| ! | GTAATTCAAACAGATCATAT+TGG | + | chr1.4:40171725-40171744 | None:intergenic | 25.0% |
| ! | TAACAAGGATTTCAACAAAA+GGG | + | chr1.4:40171623-40171642 | None:intergenic | 25.0% |
| ! | TCGATAAAATAACGAACATA+GGG | + | chr1.4:40172027-40172046 | None:intergenic | 25.0% |
| ! | TGTAAAATTCAGTTTCAAAG+AGG | + | chr1.4:40172720-40172739 | None:intergenic | 25.0% |
| !! | TATAAAAAGGACATGTTTTG+AGG | + | chr1.4:40172915-40172934 | None:intergenic | 25.0% |
| !! | TCTCTCTTCTTTTTCTATAT+AGG | - | chr1.4:40171906-40171925 | MS.gene89999:intron | 25.0% |
| !!! | AAGCTCTTCATTATTTTTGT+TGG | + | chr1.4:40171658-40171677 | None:intergenic | 25.0% |
| !!! | CCTTTATGTATTGGTAATTT+TGG | - | chr1.4:40172542-40172561 | MS.gene89999:CDS | 25.0% |
| !!! | CTCGATATTTATTTTGTCAT+CGG | - | chr1.4:40172353-40172372 | MS.gene89999:intron | 25.0% |
| !!! | GTTTCATATTGTTGTTTATC+AGG | - | chr1.4:40173146-40173165 | MS.gene89999:CDS | 25.0% |
| !!! | TACATAAAGGTTTTGAATAG+CGG | + | chr1.4:40172532-40172551 | None:intergenic | 25.0% |
| !!! | TTATGTATTGGTAATTTTGG+TGG | - | chr1.4:40172545-40172564 | MS.gene89999:CDS | 25.0% |
| CTAACAAGGATTTCAACAAA+AGG | + | chr1.4:40171624-40171643 | None:intergenic | 30.0% | |
| TGTTTGAATTACATCTTGCT+CGG | - | chr1.4:40171733-40171752 | MS.gene89999:intron | 30.0% | |
| TTAAGTACGAAAGCCAATAT+TGG | - | chr1.4:40172669-40172688 | MS.gene89999:CDS | 30.0% | |
| ! | ACTGAAATATATTTTACCGG+AGG | + | chr1.4:40172326-40172345 | None:intergenic | 30.0% |
| ! | CTGAAATATATTTTACCGGA+GGG | + | chr1.4:40172325-40172344 | None:intergenic | 30.0% |
| ! | TGAAATATATTTTACCGGAG+GGG | + | chr1.4:40172324-40172343 | None:intergenic | 30.0% |
| !! | AACTTGTTAACTGCCAATAT+TGG | + | chr1.4:40172685-40172704 | None:intergenic | 30.0% |
| !!! | CTTCATTATTTTTGTTGGCA+AGG | + | chr1.4:40171653-40171672 | None:intergenic | 30.0% |
| AACTCAATTCATTCACGTGA+TGG | - | chr1.4:40172739-40172758 | MS.gene89999:intron | 35.0% | |
| AAGGAACTCAGCAACTTAAT+GGG | - | chr1.4:40172231-40172250 | MS.gene89999:intron | 35.0% | |
| ACAACCTCAAGTATGTCATT+TGG | - | chr1.4:40171988-40172007 | MS.gene89999:intron | 35.0% | |
| AGCTCCAGTAGTAATGAATT+TGG | + | chr1.4:40171862-40171881 | None:intergenic | 35.0% | |
| ATGGATCTGGACTCTAAATT+TGG | - | chr1.4:40172146-40172165 | MS.gene89999:intron | 35.0% | |
| CAAACAGATCATATTGGTAC+AGG | + | chr1.4:40171719-40171738 | None:intergenic | 35.0% | |
| TGGATCTGGACTCTAAATTT+GGG | - | chr1.4:40172147-40172166 | MS.gene89999:intron | 35.0% | |
| TTTCCCAAATGACATACTTG+AGG | + | chr1.4:40171995-40172014 | None:intergenic | 35.0% | |
| ! | CAACCTCAAGTATGTCATTT+GGG | - | chr1.4:40171989-40172008 | MS.gene89999:intron | 35.0% |
| ! | CATCGGCAACAATTTTACAA+TGG | - | chr1.4:40172370-40172389 | MS.gene89999:intron | 35.0% |
| ! | GGCATTGTAAAACTGGATTT+TGG | - | chr1.4:40171820-40171839 | MS.gene89999:intron | 35.0% |
| !! | TATTTTTGTTGGCAAGGTAG+TGG | + | chr1.4:40171647-40171666 | None:intergenic | 35.0% |
| !!! | TTGTTTTGATCGCGTTTTGA+GGG | + | chr1.4:40171938-40171957 | None:intergenic | 35.0% |
| AAAACGCGATCAAAACAAGC+TGG | - | chr1.4:40171940-40171959 | MS.gene89999:intron | 40.0% | |
| ACCTTCATGGACATCAGATA+AGG | + | chr1.4:40172174-40172193 | None:intergenic | 40.0% | |
| AGGAACTCAGCAACTTAATG+GGG | - | chr1.4:40172232-40172251 | MS.gene89999:intron | 40.0% | |
| AGGTGATGCATCACATTTCA+TGG | - | chr1.4:40172286-40172305 | MS.gene89999:intron | 40.0% | |
| ATATTGTGGCCCACATATGA+TGG | + | chr1.4:40172497-40172516 | None:intergenic | 40.0% | |
| CAAGGAACTCAGCAACTTAA+TGG | - | chr1.4:40172230-40172249 | MS.gene89999:intron | 40.0% | |
| CCAAACACAATGGAGCTATT+TGG | + | chr1.4:40172584-40172603 | None:intergenic | 40.0% | |
| CCAAATAGCTCCATTGTGTT+TGG | - | chr1.4:40172581-40172600 | MS.gene89999:CDS | 40.0% | |
| GAAGAGCTTCAGAATTTCCA+TGG | - | chr1.4:40171669-40171688 | MS.gene89999:intron | 40.0% | |
| GACTATGTACGAGTACACTT+TGG | - | chr1.4:40171962-40171981 | MS.gene89999:intron | 40.0% | |
| GCTGCCAAATTCATTACTAC+TGG | - | chr1.4:40171855-40171874 | MS.gene89999:intron | 40.0% | |
| GGATCTGGACTCTAAATTTG+GGG | - | chr1.4:40172148-40172167 | MS.gene89999:intron | 40.0% | |
| GGCCACAATATCAATGATAG+GGG | - | chr1.4:40172506-40172525 | MS.gene89999:intron | 40.0% | |
| GGGCCACAATATCAATGATA+GGG | - | chr1.4:40172505-40172524 | MS.gene89999:intron | 40.0% | |
| TCTAATGACAAGGCAGATCA+AGG | - | chr1.4:40172212-40172231 | MS.gene89999:intron | 40.0% | |
| TGGGCCACAATATCAATGAT+AGG | - | chr1.4:40172504-40172523 | MS.gene89999:intron | 40.0% | |
| ! | AACTGGATTTTGGATGCAGA+AGG | - | chr1.4:40171830-40171849 | MS.gene89999:intron | 40.0% |
| ! | AATATATTTTACCGGAGGGG+TGG | + | chr1.4:40172321-40172340 | None:intergenic | 40.0% |
| ! | ACTGGATTTTGGATGCAGAA+GGG | - | chr1.4:40171831-40171850 | MS.gene89999:intron | 40.0% |
| ! | CCAGTTTTACAATGCCTTCT+CGG | + | chr1.4:40171816-40171835 | None:intergenic | 40.0% |
| ! | CTTTTTCTTCCCTGACACAA+GGG | - | chr1.4:40171758-40171777 | MS.gene89999:intron | 40.0% |
| ! | TGATGACGACTCTAATGACA+AGG | - | chr1.4:40172202-40172221 | MS.gene89999:intron | 40.0% |
| !! | GTGTTTTTGACTGCTCTAGA+GGG | - | chr1.4:40172123-40172142 | MS.gene89999:intron | 40.0% |
| !!! | AGGACATGTTTTGAGGAATC+TGG | + | chr1.4:40172908-40172927 | None:intergenic | 40.0% |
| !!! | CTTGTTTTGATCGCGTTTTG+AGG | + | chr1.4:40171939-40171958 | None:intergenic | 40.0% |
| !!! | TGTTTTGATCGCGTTTTGAG+GGG | + | chr1.4:40171937-40171956 | None:intergenic | 40.0% |
| ACAGGTTCAGCTCCTTAATC+AGG | + | chr1.4:40171701-40171720 | None:intergenic | 45.0% | |
| ACTCAGCAACTTAATGGGGA+TGG | - | chr1.4:40172236-40172255 | MS.gene89999:intron | 45.0% | |
| AGCAAAACTCCCTTGTGTCA+GGG | + | chr1.4:40171770-40171789 | None:intergenic | 45.0% | |
| CCTTAATCAGGTCAGAACCA+TGG | + | chr1.4:40171689-40171708 | None:intergenic | 45.0% | |
| CCTTGTGTCAGGGAAGAAAA+AGG | + | chr1.4:40171760-40171779 | None:intergenic | 45.0% | |
| CTCAGCAACTTAATGGGGAT+GGG | - | chr1.4:40172237-40172256 | MS.gene89999:intron | 45.0% | |
| GATTTGATTCCACCTGGTGT+TGG | - | chr1.4:40171591-40171610 | MS.gene89999:CDS | 45.0% | |
| GCAACTTAAGCATGCACTTC+TGG | - | chr1.4:40173227-40173246 | MS.gene89999:CDS | 45.0% | |
| GCCTTATCTGATGTCCATGA+AGG | - | chr1.4:40172170-40172189 | MS.gene89999:intron | 45.0% | |
| GGCCCCTATCATTGATATTG+TGG | + | chr1.4:40172511-40172530 | None:intergenic | 45.0% | |
| TCAGCAACTTAATGGGGATG+GGG | - | chr1.4:40172238-40172257 | MS.gene89999:intron | 45.0% | |
| ! | AGTGCATGCTTAAGTTGCTC+CGG | + | chr1.4:40173225-40173244 | None:intergenic | 45.0% |
| ! | CCTTTTTCTTCCCTGACACA+AGG | - | chr1.4:40171757-40171776 | MS.gene89999:intron | 45.0% |
| !! | CCATGGTTCTGACCTGATTA+AGG | - | chr1.4:40171686-40171705 | MS.gene89999:intron | 45.0% |
| !! | CCGAGAAGGCATTGTAAAAC+TGG | - | chr1.4:40171813-40171832 | MS.gene89999:intron | 45.0% |
| !! | CGTGTTTTTGACTGCTCTAG+AGG | - | chr1.4:40172122-40172141 | MS.gene89999:intron | 45.0% |
| !!! | TTTTGACTGCTCTAGAGGGA+TGG | - | chr1.4:40172127-40172146 | MS.gene89999:intron | 45.0% |
| CAGCAAAACTCCCTTGTGTC+AGG | + | chr1.4:40171771-40171790 | None:intergenic | 50.0% | |
| CATCAGCAGCATCACCTTCA+TGG | + | chr1.4:40172187-40172206 | None:intergenic | 50.0% | |
| CCAAAACTGATGAGCCGAGA+AGG | - | chr1.4:40171799-40171818 | MS.gene89999:intron | 50.0% | |
| TACTGGAGCTGAAGACGTGT+TGG | - | chr1.4:40171872-40171891 | MS.gene89999:intron | 50.0% | |
| ! | CCTTCTCGGCTCATCAGTTT+TGG | + | chr1.4:40171802-40171821 | None:intergenic | 50.0% |
| ! | TCTAATGCTGGTGCTGAGCA+AGG | - | chr1.4:40172266-40172285 | MS.gene89999:intron | 50.0% |
| ! | TGGCAAGGTAGTGGCTAACA+AGG | + | chr1.4:40171638-40171657 | None:intergenic | 50.0% |
| !! | GATGGGGCTAGTTCTAATGC+TGG | - | chr1.4:40172254-40172273 | MS.gene89999:intron | 50.0% |
| AAAGGGACGAAGCCAACACC+AGG | + | chr1.4:40171606-40171625 | None:intergenic | 55.0% | |
| CCACATGGAAGCTATGACGC+CGG | - | chr1.4:40173203-40173222 | MS.gene89999:CDS | 55.0% | |
| CGGCGTCATAGCTTCCATGT+GGG | + | chr1.4:40173205-40173224 | None:intergenic | 55.0% | |
| GGCGTCATAGCTTCCATGTG+GGG | + | chr1.4:40173204-40173223 | None:intergenic | 55.0% | |
| TGACTGTGTTGTGCCCCACA+TGG | - | chr1.4:40173188-40173207 | MS.gene89999:CDS | 55.0% | |
| TGGAGCTGAAGACGTGTTGG+TGG | - | chr1.4:40171875-40171894 | MS.gene89999:intron | 55.0% | |
| ! | GGAGCTGAAGACGTGTTGGT+GGG | - | chr1.4:40171876-40171895 | MS.gene89999:intron | 55.0% |
| !! | CTGCTCTAGAGGGATGGATC+TGG | - | chr1.4:40172133-40172152 | MS.gene89999:intron | 55.0% |
| CCGGCGTCATAGCTTCCATG+TGG | + | chr1.4:40173206-40173225 | None:intergenic | 60.0% | |
| GGCTACTCAAGCCACCCCTC+CGG | - | chr1.4:40172307-40172326 | MS.gene89999:intron | 65.0% | |
| GGGACGAAGCCAACACCAGG+TGG | + | chr1.4:40171603-40171622 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 40171588 | 40173266 | 40171588 | ID=MS.gene89999 |
| chr1.4 | mRNA | 40171588 | 40173266 | 40171588 | ID=MS.gene89999.t1;Parent=MS.gene89999 |
| chr1.4 | exon | 40172857 | 40173266 | 40172857 | ID=MS.gene89999.t1.exon1;Parent=MS.gene89999.t1 |
| chr1.4 | CDS | 40172857 | 40173266 | 40172857 | ID=cds.MS.gene89999.t1;Parent=MS.gene89999.t1 |
| chr1.4 | exon | 40172526 | 40172712 | 40172526 | ID=MS.gene89999.t1.exon2;Parent=MS.gene89999.t1 |
| chr1.4 | CDS | 40172526 | 40172712 | 40172526 | ID=cds.MS.gene89999.t1;Parent=MS.gene89999.t1 |
| chr1.4 | exon | 40171588 | 40171686 | 40171588 | ID=MS.gene89999.t1.exon3;Parent=MS.gene89999.t1 |
| chr1.4 | CDS | 40171588 | 40171686 | 40171588 | ID=cds.MS.gene89999.t1;Parent=MS.gene89999.t1 |
| Gene Sequence |
| Protein sequence |
