AlfalfaGEDB | MS.gene90005

M. sativa cultivar XinJiangDaYe / MS.gene90005

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90005.t1	RHN79225.1	78.9	303	45	4	1	301	1	286	5.90E-85	324.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90005.t1	A0A396JSM8	78.9	303	45	4	1	301	1	286	4.2e-85	324.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene90005.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90005.t1	MTR_1g053530	53.252	246	85	8	18	258	16	236	8.79e-68	212
MS.gene90005.t1	MTR_1g046810	32.588	313	137	11	27	299	37	315	7.01e-33	123
MS.gene90005.t1	MTR_1g052185	33.451	284	140	15	28	297	30	278	1.64e-23	97.4
MS.gene90005.t1	MTR_4g073310	28.028	289	130	8	11	298	16	227	3.43e-12	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 58 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACAAGTTGGTGGTG+AGG	0.597114	1.4:+40275940	MS.gene90005:CDS
AAAAGGAGTGTTGTTGATCA+TGG	0.562216	1.4:+40275360	MS.gene90005:CDS
AAACAATGAAAAGAACAAGT+TGG	0.564169	1.4:+40275932	MS.gene90005:CDS
AAACTTTGCAGAAATGTGGG+TGG	0.635743	1.4:+40275828	MS.gene90005:CDS
AAATACTTTCTCAAATCAAT+TGG	0.400225	1.4:-40275663	None:intergenic
AACTTTGCAGAAATGTGGGT+GGG	0.561670	1.4:+40275829	MS.gene90005:CDS
AAGATGAAGATCAGAGAGCA+AGG	0.598147	1.4:+40275858	MS.gene90005:CDS
AATGAAGAGAACAACAACAC+TGG	0.663304	1.4:+40276032	MS.gene90005:CDS
ACCACTGGTAACGCCCTCGG+CGG	0.680554	1.4:+40275423	MS.gene90005:CDS
ACTCTCATCACAAACCAAAA+AGG	0.357704	1.4:+40275343	MS.gene90005:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAGAAAAACATGCTGA+TGG	+	chr1.4:40275492-40275511	MS.gene90005:CDS	30.0%
ATCAAACTTTGCAGAAATGT+GGG	+	chr1.4:40275825-40275844	MS.gene90005:CDS	30.0%
GTTCTCTTCATTATCATCAT+TGG	-	chr1.4:40276024-40276043	None:intergenic	30.0%
TACTTTCTCAAATCAATTGG+TGG	-	chr1.4:40275663-40275682	None:intergenic	30.0%
AATGAAGAGAACAACAACAC+TGG	+	chr1.4:40276032-40276051	MS.gene90005:CDS	35.0%
ACTCTCATCACAAACCAAAA+AGG	+	chr1.4:40275343-40275362	MS.gene90005:CDS	35.0%
ATCATTGGAAGCAGATTGAT+TGG	-	chr1.4:40276009-40276028	None:intergenic	35.0%
GATCAAACTTTGCAGAAATG+TGG	+	chr1.4:40275824-40275843	MS.gene90005:CDS	35.0%
TCTTCGAAGTCAAACCATAT+TGG	-	chr1.4:40275608-40275627	None:intergenic	35.0%
TGAGTTATGTGACCAAGAAA+CGG	+	chr1.4:40275694-40275713	MS.gene90005:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	40275303	40276208	40275303	ID=MS.gene90005
chr1.4	mRNA	40275303	40276208	40275303	ID=MS.gene90005.t1;Parent=MS.gene90005
chr1.4	exon	40275303	40276208	40275303	ID=MS.gene90005.t1.exon1;Parent=MS.gene90005.t1
chr1.4	CDS	40275303	40276208	40275303	ID=cds.MS.gene90005.t1;Parent=MS.gene90005.t1

Gene Sequence

>MS.gene90005

ATGAAGCATTTTTTTTCTTCTGCTTCTTCTTCTTCATCTCACTCTCATCACAAACCAAAAAGGAGTGTTGTTGATCATGGTGCAAAACTTCACAAATGTGATTTGTGTGACAGAGAATTCACCACTGGTAACGCCCTCGGCGGCCACAAAGCATTCCATAGAGGCAACAACTTTCTTCTAGGAAAAATCAACAAAGAAAAACATGCTGATGGTATCAAGATCGAAACCAACCATTCATGTGTTCGTTGCAGCAAGACTTTTTCATCTGTCAATGCACTGAATGGACACATGAAATCGCACAGCCAATATGGTTTGACTTCGAAGAAGGGTAGTAAGATTTATGACCTGGATCAATTTCCACCAATTGATTTGAGAAAGTATTTGCCACCAATGAGTTATGTGACCAAGAAACGGAGCTGGAATTATGTTATTAATGTTGAATCTCATGTTGCAAAAGCAATGCTGGATATGTCACAGCGATCACCTAACAACCTTGATGGGAATCACCGTGTCACGAAAAGGATCAAACTTTGCAGAAATGTGGGTGGGATTGGGAAGATGAAGATCAGAGAGCAAGGTATTGTGATAAAACATTGTGTTGATGAAACAATTGTGAGAGAGAATGATAAAAACAATGAAAAGAACAAGTTGGTGGTGAGGTTAAAGATTCCGAATAGCCTTGTCATTCAAAAATCACAAGCTTCCAATCAATCTGCTTCCAATGATGATAATGAAGAGAACAACAACACTGGTGAAGATGATGAAGCAGGTGAGGAACCAAACAACACTGGTGAAGTTGATGAAGCATATGAGGAACCAACTCATGAATTGGGGTTAAATGTTGTTCGAGATTTCGATTTGAATGAGCTGCCAGTGGATGATGATGCAGATGAAACCGCCCATTAG

Protein sequence

>MS.gene90005.t1

MKHFFSSASSSSSHSHHKPKRSVVDHGAKLHKCDLCDREFTTGNALGGHKAFHRGNNFLLGKINKEKHADGIKIETNHSCVRCSKTFSSVNALNGHMKSHSQYGLTSKKGSKIYDLDQFPPIDLRKYLPPMSYVTKKRSWNYVINVESHVAKAMLDMSQRSPNNLDGNHRVTKRIKLCRNVGGIGKMKIREQGIVIKHCVDETIVRENDKNNEKNKLVVRLKIPNSLVIQKSQASNQSASNDDNEENNNTGEDDEAGEEPNNTGEVDEAYEEPTHELGLNVVRDFDLNELPVDDDADETAH