AlfalfaGEDB | MS.gene90006

M. sativa cultivar XinJiangDaYe / MS.gene90006

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90006.t1	KEH41670.1	60.4	270	74	6	1	261	1	246	1.10E-66	263.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90006.t1	A0A072VU80	60.4	270	74	6	1	261	1	246	8.3e-67	263.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene90006.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90006.t1	MTR_1g053530	72.112	251	41	5	20	261	16	246	2.30e-117	337
MS.gene90006.t1	MTR_1g046810	35.235	298	133	9	29	278	30	315	8.15e-42	146
MS.gene90006.t1	MTR_1g052185	31.884	276	134	12	29	273	23	275	2.64e-25	102
MS.gene90006.t1	MTR_4g073310	31.746	252	124	9	28	277	22	227	3.03e-20	87.0
MS.gene90006.t1	MTR_1g085590	31.472	197	96	9	88	273	73	241	2.89e-11	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 51 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATGAAAAGAACAGGT+TGG	0.620052	1.4:+40282386	MS.gene90006:CDS
AAAGACAAACATGCTGATGA+TGG	0.542758	1.4:+40281997	MS.gene90006:CDS
ACAACTGGTAATGCCCTCGG+CGG	0.704742	1.4:+40281925	MS.gene90006:CDS
ACATTGTCATCATTGGAGGC+AGG	0.544139	1.4:-40282468	None:intergenic
ACGAGACCAAGAAACGGAGC+TGG	0.539882	1.4:+40282199	MS.gene90006:CDS
ACGGTGATTCACATTAAGAT+TGG	0.473501	1.4:-40282292	None:intergenic
AGCACCAACAACTTTCTTAA+AGG	0.236987	1.4:+40281964	MS.gene90006:CDS
AGCCAAAATGGTTCGAAGAA+GGG	0.561339	1.4:+40282108	MS.gene90006:CDS
ATAATCCCAGCTCCGTTTCT+TGG	0.287583	1.4:-40282205	None:intergenic
ATCCGTTTCATCACCTTCAT+CGG	0.483860	1.4:-40282502	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAATGAAAAGAACAGGT+TGG	+	chr1.4:40282386-40282405	MS.gene90006:CDS	30.0%
CAAATACTTTGTCAGATCAA+TGG	-	chr1.4:40282166-40282185	None:intergenic	30.0%
GAAAATGAGAAACATCAACA+AGG	+	chr1.4:40281862-40281881	MS.gene90006:CDS	30.0%
GTGAGATTAAAGATTCCAAA+AGG	+	chr1.4:40282411-40282430	MS.gene90006:CDS	30.0%
TGAATAGAATGATGAGAAGA+AGG	-	chr1.4:40281811-40281830	None:intergenic	30.0%
TGTTAACATTGCTGAAACAA+TGG	+	chr1.4:40282245-40282264	MS.gene90006:CDS	30.0%
AAAGACAAACATGCTGATGA+TGG	+	chr1.4:40281997-40282016	MS.gene90006:CDS	35.0%
ACGGTGATTCACATTAAGAT+TGG	-	chr1.4:40282295-40282314	None:intergenic	35.0%
AGCACCAACAACTTTCTTAA+AGG	+	chr1.4:40281964-40281983	MS.gene90006:CDS	35.0%
CTTTGAATGGACACATGAAA+TGG	+	chr1.4:40282082-40282101	MS.gene90006:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	40281778	40282620	40281778	ID=MS.gene90006
chr1.4	mRNA	40281778	40282620	40281778	ID=MS.gene90006.t1;Parent=MS.gene90006
chr1.4	exon	40281778	40282620	40281778	ID=MS.gene90006.t1.exon1;Parent=MS.gene90006.t1
chr1.4	CDS	40281778	40282620	40281778	ID=cds.MS.gene90006.t1;Parent=MS.gene90006.t1

Gene Sequence

>MS.gene90006

ATGATGAAGAATTCTTTTTCTTCTTCTTCACCTTCTTCTCATCATTCTATTCATCATAAGCCAAAAACCAATGTTGTTGATCATGAAAATGAGAAACATCAACAAGGTGCAAGACTTCACAAATGTGATTTGTGTGCTAGAGAATTCACAACTGGTAATGCCCTCGGCGGCCACAAACAATTCCATAGCACCAACAACTTTCTTAAAGGTAAAATCAACAAAGACAAACATGCTGATGATGGTATTAAGATCGGAACCAACCATTCATGTGTTCTTTGCAACAAGGCTTTTTCATCGAAAAAAGCTTTGAATGGACACATGAAATGGCACAGCCAAAATGGTTCGAAGAAGGGTAGTAACAATTACGACCTAGATCAGTTTCCATCCATTGATCTGACAAAGTATTTGCCACCAATAAGATACGAGACCAAGAAACGGAGCTGGGATTATATTCTTGATGTTGAAACTGTTAACATTGCTGAAACAATGGTGGAAATGTCTCAGCTATCATCTGCCAATCTTAATGTGAATCACCGTGACTGTAAAAGGATGAAACTTTGCAGCAATGTTGATGATGATGATGTGAAGATCAATGAACAAGGTGGTAAAAACAATGAAAAGAACAGGTTGGTGGTGAGATTAAAGATTCCAAAAGGACTTATTACTCAAACATCTCAAGCTAGCAAGCAACCTGCCTCCAATGATGACAATGTAGAGAACAATACCGATGAAGGTGATGAAACGGATGGGGAATCAACTCTTGAATTCGAGTCAAACATTTTTCAGGATTTTGATTTGAATGAGCTACCGGCAAATGATGTTGTAGATGAAACCACTATTTAG

Protein sequence

>MS.gene90006.t1

MMKNSFSSSSPSSHHSIHHKPKTNVVDHENEKHQQGARLHKCDLCAREFTTGNALGGHKQFHSTNNFLKGKINKDKHADDGIKIGTNHSCVLCNKAFSSKKALNGHMKWHSQNGSKKGSNNYDLDQFPSIDLTKYLPPIRYETKKRSWDYILDVETVNIAETMVEMSQLSSANLNVNHRDCKRMKLCSNVDDDDVKINEQGGKNNEKNRLVVRLKIPKGLITQTSQASKQPASNDDNVENNTDEGDETDGESTLEFESNIFQDFDLNELPANDVVDETTI