Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90044.t1 | XP_013447951.1 | 86.3 | 343 | 12 | 5 | 1 | 309 | 26 | 367 | 3.50E-157 | 564.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90044.t1 | Q49I57 | 54.2 | 107 | 41 | 2 | 47 | 153 | 124 | 222 | 1.0e-24 | 115.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90044.t1 | A0A072TYQ4 | 86.3 | 343 | 12 | 5 | 1 | 309 | 26 | 367 | 2.5e-157 | 564.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene90044.t1 | TF | SBP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90044.t1 | MTR_7g028740 | 85.423 | 343 | 15 | 5 | 1 | 309 | 26 | 367 | 0.0 | 573 |
| MS.gene90044.t1 | MTR_3g099080 | 35.793 | 271 | 153 | 7 | 48 | 309 | 118 | 376 | 1.67e-38 | 140 |
| MS.gene90044.t1 | MTR_8g096780 | 51.695 | 118 | 54 | 3 | 48 | 164 | 119 | 234 | 7.03e-33 | 125 |
| MS.gene90044.t1 | MTR_7g092930 | 63.514 | 74 | 27 | 0 | 37 | 110 | 77 | 150 | 2.86e-25 | 103 |
| MS.gene90044.t1 | MTR_1g053715 | 54.444 | 90 | 35 | 1 | 37 | 120 | 83 | 172 | 5.00e-24 | 100 |
| MS.gene90044.t1 | MTR_3g085180 | 66.667 | 60 | 20 | 0 | 48 | 107 | 185 | 244 | 9.19e-24 | 100 |
| MS.gene90044.t1 | MTR_4g109770 | 75.439 | 57 | 14 | 0 | 47 | 103 | 142 | 198 | 1.13e-23 | 100 |
| MS.gene90044.t1 | MTR_8g463140 | 70.000 | 60 | 18 | 0 | 47 | 106 | 84 | 143 | 1.30e-23 | 95.5 |
| MS.gene90044.t1 | MTR_2g461920 | 49.524 | 105 | 51 | 1 | 48 | 152 | 191 | 293 | 1.93e-23 | 100 |
| MS.gene90044.t1 | MTR_5g046670 | 55.000 | 80 | 36 | 0 | 47 | 126 | 263 | 342 | 1.20e-22 | 98.2 |
| MS.gene90044.t1 | MTR_4g088555 | 61.538 | 65 | 25 | 0 | 37 | 101 | 72 | 136 | 1.67e-21 | 89.0 |
| MS.gene90044.t1 | MTR_1g035010 | 47.619 | 105 | 43 | 1 | 3 | 107 | 91 | 183 | 3.87e-21 | 94.4 |
| MS.gene90044.t1 | MTR_2g078770 | 72.727 | 55 | 15 | 0 | 47 | 101 | 77 | 131 | 4.81e-21 | 88.6 |
| MS.gene90044.t1 | MTR_8g080690 | 66.102 | 59 | 20 | 0 | 48 | 106 | 171 | 229 | 7.09e-21 | 92.0 |
| MS.gene90044.t1 | MTR_2g014200 | 47.368 | 95 | 43 | 1 | 18 | 105 | 47 | 141 | 7.75e-21 | 87.0 |
| MS.gene90044.t1 | MTR_7g444860 | 56.944 | 72 | 31 | 0 | 36 | 107 | 157 | 228 | 1.86e-20 | 90.1 |
| MS.gene90044.t1 | MTR_1g086250 | 59.155 | 71 | 29 | 0 | 37 | 107 | 156 | 226 | 5.66e-20 | 90.9 |
| MS.gene90044.t1 | MTR_2g046550 | 67.797 | 59 | 19 | 0 | 48 | 106 | 159 | 217 | 8.04e-20 | 90.5 |
| MS.gene90044.t1 | MTR_7g110320 | 53.933 | 89 | 40 | 1 | 14 | 101 | 130 | 218 | 1.07e-19 | 90.1 |
| MS.gene90044.t1 | MTR_7g110320 | 53.933 | 89 | 40 | 1 | 14 | 101 | 130 | 218 | 1.38e-19 | 89.7 |
| MS.gene90044.t1 | MTR_8g005960 | 50.000 | 84 | 42 | 0 | 20 | 103 | 179 | 262 | 3.73e-19 | 86.7 |
| MS.gene90044.t1 | MTR_8g080680 | 58.333 | 60 | 25 | 0 | 48 | 107 | 152 | 211 | 3.52e-18 | 84.7 |
| MS.gene90044.t1 | MTR_8g080670 | 56.250 | 64 | 28 | 0 | 37 | 100 | 171 | 234 | 3.05e-17 | 82.0 |
| MS.gene90044.t1 | MTR_2g020620 | 50.000 | 54 | 27 | 0 | 48 | 101 | 110 | 163 | 1.16e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90044.t1 | AT5G50670 | 51.327 | 113 | 48 | 3 | 47 | 153 | 120 | 231 | 3.06e-29 | 115 |
| MS.gene90044.t1 | AT5G50670 | 51.327 | 113 | 48 | 3 | 47 | 153 | 120 | 231 | 3.06e-29 | 115 |
| MS.gene90044.t1 | AT5G50570 | 51.327 | 113 | 48 | 3 | 47 | 153 | 120 | 231 | 3.06e-29 | 115 |
| MS.gene90044.t1 | AT5G50570 | 51.327 | 113 | 48 | 3 | 47 | 153 | 120 | 231 | 3.06e-29 | 115 |
| MS.gene90044.t1 | AT2G42200 | 62.821 | 78 | 29 | 0 | 37 | 114 | 83 | 160 | 1.86e-25 | 104 |
| MS.gene90044.t1 | AT5G43270 | 43.269 | 104 | 59 | 0 | 37 | 140 | 178 | 281 | 8.67e-23 | 98.2 |
| MS.gene90044.t1 | AT5G43270 | 43.269 | 104 | 59 | 0 | 37 | 140 | 178 | 281 | 8.67e-23 | 98.2 |
| MS.gene90044.t1 | AT5G43270 | 43.269 | 104 | 59 | 0 | 37 | 140 | 178 | 281 | 8.67e-23 | 98.2 |
| MS.gene90044.t1 | AT1G69170 | 76.364 | 55 | 13 | 0 | 48 | 102 | 144 | 198 | 9.84e-23 | 97.8 |
| MS.gene90044.t1 | AT1G76580 | 70.000 | 60 | 18 | 0 | 48 | 107 | 134 | 193 | 1.74e-22 | 98.2 |
| MS.gene90044.t1 | AT1G76580 | 70.000 | 60 | 18 | 0 | 48 | 107 | 134 | 193 | 1.76e-22 | 98.2 |
| MS.gene90044.t1 | AT1G76580 | 70.000 | 60 | 18 | 0 | 48 | 107 | 134 | 193 | 1.78e-22 | 98.2 |
| MS.gene90044.t1 | AT2G33810 | 53.488 | 86 | 34 | 1 | 22 | 101 | 42 | 127 | 3.09e-22 | 90.5 |
| MS.gene90044.t1 | AT1G27370 | 73.214 | 56 | 15 | 0 | 48 | 103 | 196 | 251 | 6.61e-22 | 94.7 |
| MS.gene90044.t1 | AT1G27370 | 71.930 | 57 | 16 | 0 | 47 | 103 | 195 | 251 | 9.37e-22 | 94.7 |
| MS.gene90044.t1 | AT1G27370 | 71.930 | 57 | 16 | 0 | 47 | 103 | 195 | 251 | 9.37e-22 | 94.7 |
| MS.gene90044.t1 | AT1G27370 | 71.930 | 57 | 16 | 0 | 47 | 103 | 195 | 251 | 9.37e-22 | 94.7 |
| MS.gene90044.t1 | AT1G27370 | 71.930 | 57 | 16 | 0 | 47 | 103 | 195 | 251 | 9.37e-22 | 94.7 |
| MS.gene90044.t1 | AT1G27370 | 71.930 | 57 | 16 | 0 | 47 | 103 | 195 | 251 | 9.37e-22 | 94.7 |
| MS.gene90044.t1 | AT1G27370 | 71.930 | 57 | 16 | 0 | 47 | 103 | 195 | 251 | 9.37e-22 | 94.7 |
| MS.gene90044.t1 | AT3G60030 | 68.852 | 61 | 19 | 0 | 47 | 107 | 146 | 206 | 1.19e-21 | 95.9 |
| MS.gene90044.t1 | AT1G27360 | 71.930 | 57 | 16 | 0 | 47 | 103 | 194 | 250 | 2.12e-21 | 94.0 |
| MS.gene90044.t1 | AT1G27360 | 71.930 | 57 | 16 | 0 | 47 | 103 | 194 | 250 | 2.12e-21 | 94.0 |
| MS.gene90044.t1 | AT1G27360 | 71.930 | 57 | 16 | 0 | 47 | 103 | 194 | 250 | 2.12e-21 | 94.0 |
| MS.gene90044.t1 | AT1G27360 | 71.930 | 57 | 16 | 0 | 47 | 103 | 194 | 250 | 2.12e-21 | 94.0 |
| MS.gene90044.t1 | AT3G57920 | 48.387 | 93 | 43 | 2 | 37 | 129 | 68 | 155 | 1.08e-20 | 91.3 |
| MS.gene90044.t1 | AT1G53160 | 54.667 | 75 | 34 | 0 | 34 | 108 | 60 | 134 | 1.55e-20 | 87.0 |
| MS.gene90044.t1 | AT1G20980 | 45.000 | 120 | 53 | 2 | 1 | 107 | 81 | 200 | 2.51e-20 | 92.0 |
| MS.gene90044.t1 | AT1G53160 | 54.667 | 75 | 34 | 0 | 34 | 108 | 60 | 134 | 2.53e-20 | 86.7 |
| MS.gene90044.t1 | AT1G53160 | 54.667 | 75 | 34 | 0 | 34 | 108 | 60 | 134 | 2.53e-20 | 86.7 |
| MS.gene90044.t1 | AT2G47070 | 69.492 | 59 | 18 | 0 | 47 | 105 | 125 | 183 | 2.55e-20 | 92.0 |
| MS.gene90044.t1 | AT3G15270 | 60.294 | 68 | 27 | 0 | 34 | 101 | 69 | 136 | 2.80e-20 | 86.7 |
| MS.gene90044.t1 | AT1G02065 | 60.000 | 65 | 26 | 0 | 37 | 101 | 197 | 261 | 3.01e-18 | 84.3 |
| MS.gene90044.t1 | AT2G47070 | 71.698 | 53 | 15 | 0 | 53 | 105 | 2 | 54 | 9.37e-18 | 84.3 |
| MS.gene90044.t1 | AT5G18830 | 43.939 | 66 | 37 | 0 | 48 | 113 | 158 | 223 | 4.26e-12 | 67.0 |
| MS.gene90044.t1 | AT5G18830 | 43.939 | 66 | 37 | 0 | 48 | 113 | 158 | 223 | 4.58e-12 | 67.0 |
| MS.gene90044.t1 | AT5G18830 | 43.939 | 66 | 37 | 0 | 48 | 113 | 158 | 223 | 4.89e-12 | 67.0 |
Find 75 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCTTATCTTTCGCCTTTC+CGG | 0.146373 | 7.4:+73321335 | None:intergenic |
| CAGTGACTCTTCCATTCTTC+TGG | 0.209211 | 7.4:-73321215 | MS.gene90044:CDS |
| TGTTAACATCGCCGGACTTC+GGG | 0.274713 | 7.4:+73321612 | None:intergenic |
| GAGAAATCAGTTCATGATTC+AGG | 0.275617 | 7.4:-73323660 | MS.gene90044:CDS |
| AACCAACACAACAGGAGTTT+TGG | 0.287936 | 7.4:+73323469 | None:intergenic |
| CTACCAAAGTGCAGGATTCT+AGG | 0.315434 | 7.4:+73321785 | None:intergenic |
| GGCCAAATGTTTCTCATAAT+AGG | 0.321028 | 7.4:+73321743 | None:intergenic |
| GGATTTGAGGCTTGGTGATC+AGG | 0.330157 | 7.4:-73323697 | MS.gene90044:CDS |
| ATGAGGTTAAGAGGAGTTGC+AGG | 0.333125 | 7.4:-73323010 | MS.gene90044:CDS |
| GGTTCATCCGCAGGTGAAAA+AGG | 0.348606 | 7.4:-73321542 | MS.gene90044:intron |
| GGACCGGTATTTGTTCTAGA+TGG | 0.361540 | 7.4:-73321309 | MS.gene90044:CDS |
| TCATATACCTGCTGCATTGT+TGG | 0.372382 | 7.4:+73323423 | None:intergenic |
| GCTTCAGTTATGGAAGTTGC+AGG | 0.374630 | 7.4:+73321722 | None:intergenic |
| CGACAAACATAAACAGGATA+AGG | 0.380487 | 7.4:-73321660 | MS.gene90044:CDS |
| AGAGTATCATAAGCGTCAAT+AGG | 0.383548 | 7.4:-73323508 | MS.gene90044:CDS |
| TGATCAGGCTTCTGATTCAT+TGG | 0.384148 | 7.4:-73323682 | MS.gene90044:CDS |
| TCCATAACTGAAGCTGAATC+TGG | 0.398324 | 7.4:-73321713 | MS.gene90044:CDS |
| GCAGCATCCCATTGCAATGA+AGG | 0.401478 | 7.4:+73321274 | None:intergenic |
| ACCAGATTCAGCTTCAGTTA+TGG | 0.414958 | 7.4:+73321712 | None:intergenic |
| TCGAATCGACAAACATAAAC+AGG | 0.415548 | 7.4:-73321666 | MS.gene90044:CDS |
| AGTGACTCTTCCATTCTTCT+GGG | 0.418501 | 7.4:-73321214 | MS.gene90044:CDS |
| CGGAGTTTGATGAGGTTAAG+AGG | 0.427340 | 7.4:-73323019 | MS.gene90044:CDS |
| TTGTTAACATCGCCGGACTT+CGG | 0.433916 | 7.4:+73321611 | None:intergenic |
| AAAACTCCTGTTGTGTTGGT+TGG | 0.434108 | 7.4:-73323467 | MS.gene90044:CDS |
| GGATGGCTGATAGGAGTTCC+AGG | 0.442493 | 7.4:+73321581 | None:intergenic |
| GATTCAATGGATTTGAGGCT+TGG | 0.443840 | 7.4:-73323705 | None:intergenic |
| ATGCTGCAAATGGGTCCTAA+TGG | 0.447508 | 7.4:-73321258 | MS.gene90044:CDS |
| CAACAAACCTTCATTGCAAT+GGG | 0.452275 | 7.4:-73321281 | MS.gene90044:CDS |
| ATCCTATTATGAGAAACATT+TGG | 0.453663 | 7.4:-73321745 | MS.gene90044:CDS |
| GAGTATCATAAGCGTCAATA+GGG | 0.458694 | 7.4:-73323507 | MS.gene90044:CDS |
| AAGGAGATTCAATGGATTTG+AGG | 0.461624 | 7.4:-73323710 | None:intergenic |
| TTGCAATGGGATGCTGCAAA+TGG | 0.467365 | 7.4:-73321268 | MS.gene90044:CDS |
| GACAAACATAAACAGGATAA+GGG | 0.477832 | 7.4:-73321659 | MS.gene90044:CDS |
| TGCTGCTTTGTTAACATCGC+CGG | 0.478377 | 7.4:+73321604 | None:intergenic |
| ACGAAGGAGTACTCGTACTC+CGG | 0.480410 | 7.4:-73321354 | MS.gene90044:CDS |
| CATCCTATCCGCGGTGCCGT+TGG | 0.484865 | 7.4:-73321563 | MS.gene90044:CDS |
| AGTTGCAGGAAACGTCTTGA+TGG | 0.488371 | 7.4:-73322996 | MS.gene90044:CDS |
| AGAACAAATACCGGTCCATT+CGG | 0.494466 | 7.4:+73321315 | None:intergenic |
| AGGATAAGGGACATCCTCAT+TGG | 0.499189 | 7.4:-73321646 | MS.gene90044:CDS |
| CAAGAAATTCTCCCGAAGTC+CGG | 0.500018 | 7.4:-73321623 | MS.gene90044:CDS |
| CCGCGGATAGGATGGCTGAT+AGG | 0.503089 | 7.4:+73321572 | None:intergenic |
| AGACGCTACTCCCAGAAGAA+TGG | 0.507419 | 7.4:+73321204 | None:intergenic |
| TTACCTCCAACCAACACAAC+AGG | 0.509843 | 7.4:+73323461 | None:intergenic |
| GAAAGATAAGCCGAATGGAC+CGG | 0.517456 | 7.4:-73321325 | MS.gene90044:CDS |
| CAACGGCACCGCGGATAGGA+TGG | 0.519767 | 7.4:+73321564 | None:intergenic |
| ACAACAAACCTTCATTGCAA+TGG | 0.522232 | 7.4:-73321282 | MS.gene90044:CDS |
| AGTCCAACACAATCTTCGTC+TGG | 0.529463 | 7.4:-73321396 | MS.gene90044:CDS |
| ACTCCTGTTGTGTTGGTTGG+AGG | 0.530507 | 7.4:-73323464 | MS.gene90044:CDS |
| ATGAAAAGAGACTGTGGCTG+AGG | 0.533136 | 7.4:+73322951 | None:intergenic |
| TTCACCTGCGGATGAACCAA+CGG | 0.533214 | 7.4:+73321547 | None:intergenic |
| ACAACCCGAGTCAAAAGATC+CGG | 0.534984 | 7.4:+73321491 | None:intergenic |
| GAACCAACGGCACCGCGGAT+AGG | 0.537355 | 7.4:+73321560 | None:intergenic |
| GGTGCCGTTGGTTCATCCGC+AGG | 0.539865 | 7.4:-73321551 | MS.gene90044:CDS |
| GGACCTAGAATCCTGCACTT+TGG | 0.540161 | 7.4:-73321788 | MS.gene90044:CDS |
| TTCCAAAACTCCTGTTGTGT+TGG | 0.540226 | 7.4:-73323471 | MS.gene90044:CDS |
| GGGAGAATTTCTTGCCAATG+AGG | 0.548549 | 7.4:+73321632 | None:intergenic |
| TGCAATGGGATGCTGCAAAT+GGG | 0.554526 | 7.4:-73321267 | MS.gene90044:CDS |
| GGTTCTGCCAACAATGCAGC+AGG | 0.557731 | 7.4:-73323430 | MS.gene90044:intron |
| TCTGAGGGCTACCAAAGTGC+AGG | 0.563556 | 7.4:+73321777 | None:intergenic |
| ATGTAGGTTTCATTCACTTG+CGG | 0.564106 | 7.4:-73323039 | MS.gene90044:intron |
| GATGTTAACAAAGCAGCACC+TGG | 0.566098 | 7.4:-73321599 | MS.gene90044:CDS |
| GGAGTACTCGTACTCCGGAA+AGG | 0.575335 | 7.4:-73321349 | MS.gene90044:CDS |
| TTTCCATCTAGAACAAATAC+CGG | 0.581750 | 7.4:+73321306 | None:intergenic |
| ATCAGTTCATGATTCAGGAA+AGG | 0.585059 | 7.4:-73323655 | MS.gene90044:CDS |
| ATGGACATAATAAGCGCAGA+AGG | 0.585971 | 7.4:-73322977 | MS.gene90044:CDS |
| TTCACTTGCGGAGTTTGATG+AGG | 0.591231 | 7.4:-73323027 | MS.gene90044:CDS |
| TGGTTGGAGGTAAGCAGCAG+AGG | 0.595809 | 7.4:-73323451 | MS.gene90044:CDS |
| ATAGGATTCACATATGTCTG+AGG | 0.596972 | 7.4:+73321761 | None:intergenic |
| TAGGATTCACATATGTCTGA+GGG | 0.610035 | 7.4:+73321762 | None:intergenic |
| GTTCCAGACGAAGATTGTGT+TGG | 0.619281 | 7.4:+73321393 | None:intergenic |
| AAGTTCATGTACAATTACAA+AGG | 0.619439 | 7.4:-73322918 | MS.gene90044:intron |
| AAGGCGAAAGATAAGCCGAA+TGG | 0.638149 | 7.4:-73321330 | MS.gene90044:CDS |
| GCAGCCATGAAAAGAGACTG+TGG | 0.673886 | 7.4:+73322945 | None:intergenic |
| CCTATCAGCCATCCTATCCG+CGG | 0.675251 | 7.4:-73321572 | MS.gene90044:CDS |
| CGGATGAACCAACGGCACCG+CGG | 0.749670 | 7.4:+73321555 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATCTTTGTACAATTTT+AGG | - | chr7.4:73323099-73323118 | MS.gene90044:intron | 15.0% |
| !!! | CTATCTGAATATTCTAAAAA+TGG | - | chr7.4:73321760-73321779 | MS.gene90044:CDS | 20.0% |
| !!! | TAATTAAGTTGTATATCCAA+AGG | + | chr7.4:73322313-73322332 | None:intergenic | 20.0% |
| ! | AAGTTCATGTACAATTACAA+AGG | - | chr7.4:73321990-73322009 | MS.gene90044:intron | 25.0% |
| ! | ACATATACATACAATCCATA+AGG | - | chr7.4:73322180-73322199 | MS.gene90044:intron | 25.0% |
| ! | ATATTCAGATAGCTTCTATA+TGG | + | chr7.4:73321752-73321771 | None:intergenic | 25.0% |
| ! | ATCCTATTATGAGAAACATT+TGG | - | chr7.4:73323163-73323182 | MS.gene90044:intron | 25.0% |
| ! | ATTCTATTGTCAAAACCTTA+TGG | + | chr7.4:73322198-73322217 | None:intergenic | 25.0% |
| ! | CATTAAATTTGATTAGAGAG+AGG | + | chr7.4:73322638-73322657 | None:intergenic | 25.0% |
| ! | CTTTCTTGTGAAAATAAAGA+CGG | + | chr7.4:73322678-73322697 | None:intergenic | 25.0% |
| ! | TGGATTTCAATTGCTAAAAA+TGG | - | chr7.4:73322735-73322754 | MS.gene90044:intron | 25.0% |
| !! | TTTTAGCAATTGAAATCCAT+GGG | + | chr7.4:73322734-73322753 | None:intergenic | 25.0% |
| !!! | CGAAGATATAACGTTTTTTA+TGG | - | chr7.4:73322124-73322143 | MS.gene90044:intron | 25.0% |
| !!! | CTTTATTTTCACAAGAAAGA+TGG | - | chr7.4:73322679-73322698 | MS.gene90044:intron | 25.0% |
| !!! | TGAATTCAAGTTGTTTGTTT+CGG | - | chr7.4:73321505-73321524 | MS.gene90044:intron | 25.0% |
| !!! | TTTTTAGCAATTGAAATCCA+TGG | + | chr7.4:73322735-73322754 | None:intergenic | 25.0% |
| AACTTTGCTAATATTTCCCA+TGG | - | chr7.4:73322715-73322734 | MS.gene90044:intron | 30.0% | |
| AATTTGATTAGAGAGAGGAT+TGG | + | chr7.4:73322633-73322652 | None:intergenic | 30.0% | |
| AGTAACTGTTGGATTTAGAT+CGG | - | chr7.4:73322787-73322806 | MS.gene90044:intron | 30.0% | |
| ATTAGTGCTTTAGTAACTGT+TGG | - | chr7.4:73322776-73322795 | MS.gene90044:intron | 30.0% | |
| GACAAACATAAACAGGATAA+GGG | - | chr7.4:73323249-73323268 | MS.gene90044:intron | 30.0% | |
| TATAGTTACTTAGCAACCTT+TGG | - | chr7.4:73322294-73322313 | MS.gene90044:intron | 30.0% | |
| TGAACTAATATGATTACTGC+TGG | - | chr7.4:73322975-73322994 | MS.gene90044:CDS | 30.0% | |
| ! | GAATCTTGATCCTTGATTTT+CGG | - | chr7.4:73322941-73322960 | MS.gene90044:CDS | 30.0% |
| ! | TATTTTCACAAGAAAGATGG+TGG | - | chr7.4:73322682-73322701 | MS.gene90044:intron | 30.0% |
| ! | TCATTTTCGATCAATCCATT+AGG | + | chr7.4:73323668-73323687 | None:intergenic | 30.0% |
| ! | TTTCCATCTAGAACAAATAC+CGG | + | chr7.4:73323605-73323624 | None:intergenic | 30.0% |
| !! | GAATTCAAGTTGTTTGTTTC+GGG | - | chr7.4:73321506-73321525 | MS.gene90044:intron | 30.0% |
| !! | TCTCATGATTCTAAGATAGA+TGG | - | chr7.4:73322028-73322047 | MS.gene90044:intron | 30.0% |
| !! | TTGAGGTTGTTTTGTAACAT+GGG | - | chr7.4:73321832-73321851 | MS.gene90044:intron | 30.0% |
| !! | TTTGAGGTTGTTTTGTAACA+TGG | - | chr7.4:73321831-73321850 | MS.gene90044:intron | 30.0% |
| ACAACAAACCTTCATTGCAA+TGG | - | chr7.4:73323626-73323645 | MS.gene90044:CDS | 35.0% | |
| ACCTCAAAACATGATGTGTT+TGG | + | chr7.4:73321819-73321838 | None:intergenic | 35.0% | |
| AGCTTGTGCAATAAGTTTCT+AGG | - | chr7.4:73322429-73322448 | MS.gene90044:intron | 35.0% | |
| ATAATTCCCTCTTTCATCTC+AGG | + | chr7.4:73322102-73322121 | None:intergenic | 35.0% | |
| ATAGGATTCACATATGTCTG+AGG | + | chr7.4:73323150-73323169 | None:intergenic | 35.0% | |
| ATCAGTTCATGATTCAGGAA+AGG | - | chr7.4:73321253-73321272 | MS.gene90044:CDS | 35.0% | |
| ATGTAGGTTTCATTCACTTG+CGG | - | chr7.4:73321869-73321888 | MS.gene90044:intron | 35.0% | |
| ATTCATAGTATTCCAACTGC+AGG | - | chr7.4:73322918-73322937 | MS.gene90044:intron | 35.0% | |
| CAACAAACCTTCATTGCAAT+GGG | - | chr7.4:73323627-73323646 | MS.gene90044:CDS | 35.0% | |
| CGACAAACATAAACAGGATA+AGG | - | chr7.4:73323248-73323267 | MS.gene90044:intron | 35.0% | |
| CTTGTGAAAATAAAGACGGA+AGG | + | chr7.4:73322674-73322693 | None:intergenic | 35.0% | |
| GAGAAATCAGTTCATGATTC+AGG | - | chr7.4:73321248-73321267 | MS.gene90044:CDS | 35.0% | |
| GAGTATCATAAGCGTCAATA+GGG | - | chr7.4:73321401-73321420 | MS.gene90044:CDS | 35.0% | |
| GGCCAAATGTTTCTCATAAT+AGG | + | chr7.4:73323168-73323187 | None:intergenic | 35.0% | |
| TAGGATTCACATATGTCTGA+GGG | + | chr7.4:73323149-73323168 | None:intergenic | 35.0% | |
| TCGAAATTCAAATAGTGAGC+TGG | - | chr7.4:73322841-73322860 | MS.gene90044:intron | 35.0% | |
| TCGAATCGACAAACATAAAC+AGG | - | chr7.4:73323242-73323261 | MS.gene90044:intron | 35.0% | |
| TTAGCTCAGAATTCAGTTCA+TGG | + | chr7.4:73322260-73322279 | None:intergenic | 35.0% | |
| TTCATAGTATTCCAACTGCA+GGG | - | chr7.4:73322919-73322938 | MS.gene90044:CDS | 35.0% | |
| TTCCACAAGCACAAGTAATA+TGG | - | chr7.4:73323063-73323082 | MS.gene90044:intron | 35.0% | |
| ! | AGAGTATCATAAGCGTCAAT+AGG | - | chr7.4:73321400-73321419 | MS.gene90044:CDS | 35.0% |
| ! | AGCTGATTCTACTATTGAAG+AGG | - | chr7.4:73322375-73322394 | MS.gene90044:intron | 35.0% |
| ! | TCCAAACACATCATGTTTTG+AGG | - | chr7.4:73321815-73321834 | MS.gene90044:intron | 35.0% |
| !! | AATATGATTTGCTCGGTTGA+TGG | - | chr7.4:73321350-73321369 | MS.gene90044:CDS | 35.0% |
| !! | ATCGCAGAATATGATTTGCT+CGG | - | chr7.4:73321343-73321362 | MS.gene90044:CDS | 35.0% |
| !! | TGAGGTTGTTTTGTAACATG+GGG | - | chr7.4:73321833-73321852 | MS.gene90044:intron | 35.0% |
| ACCAGATTCAGCTTCAGTTA+TGG | + | chr7.4:73323199-73323218 | None:intergenic | 40.0% | |
| AGAACAAATACCGGTCCATT+CGG | + | chr7.4:73323596-73323615 | None:intergenic | 40.0% | |
| AGCACTAATCGTGTAAATGC+AGG | + | chr7.4:73322765-73322784 | None:intergenic | 40.0% | |
| AGTGACTCTTCCATTCTTCT+GGG | - | chr7.4:73323694-73323713 | MS.gene90044:CDS | 40.0% | |
| AGTGACTGTTGGATCAAGAT+TGG | + | chr7.4:73322880-73322899 | None:intergenic | 40.0% | |
| ATGGACATAATAAGCGCAGA+AGG | - | chr7.4:73321931-73321950 | MS.gene90044:intron | 40.0% | |
| CTCCATATTACTTGTGCTTG+TGG | + | chr7.4:73323068-73323087 | None:intergenic | 40.0% | |
| GCACTAATCGTGTAAATGCA+GGG | + | chr7.4:73322764-73322783 | None:intergenic | 40.0% | |
| GGGTGATGTCAATTTGATGT+AGG | - | chr7.4:73321853-73321872 | MS.gene90044:intron | 40.0% | |
| GTCAAACCTGAGATGAAAGA+GGG | - | chr7.4:73322093-73322112 | MS.gene90044:intron | 40.0% | |
| TCATATACCTGCTGCATTGT+TGG | + | chr7.4:73321488-73321507 | None:intergenic | 40.0% | |
| TCCATAACTGAAGCTGAATC+TGG | - | chr7.4:73323195-73323214 | MS.gene90044:intron | 40.0% | |
| TGATCAGGCTTCTGATTCAT+TGG | - | chr7.4:73321226-73321245 | MS.gene90044:CDS | 40.0% | |
| TGTCAAACCTGAGATGAAAG+AGG | - | chr7.4:73322092-73322111 | MS.gene90044:intron | 40.0% | |
| TTCCAAAACTCCTGTTGTGT+TGG | - | chr7.4:73321437-73321456 | MS.gene90044:CDS | 40.0% | |
| TTTGAGCATGCCGAAAATCA+AGG | + | chr7.4:73322954-73322973 | None:intergenic | 40.0% | |
| ! | AAAACTCCTGTTGTGTTGGT+TGG | - | chr7.4:73321441-73321460 | MS.gene90044:CDS | 40.0% |
| ! | AAAAGAGCGCGTTTGCAAAA+TGG | - | chr7.4:73321320-73321339 | MS.gene90044:CDS | 40.0% |
| ! | AACCAACACAACAGGAGTTT+TGG | + | chr7.4:73321442-73321461 | None:intergenic | 40.0% |
| ! | GCTCTTTTCAACGATCTAGT+AGG | + | chr7.4:73321308-73321327 | None:intergenic | 40.0% |
| !! | GTTGCATTTTGATGCTACGA+AGG | - | chr7.4:73323538-73323557 | MS.gene90044:intron | 40.0% |
| AAGGCGAAAGATAAGCCGAA+TGG | - | chr7.4:73323578-73323597 | MS.gene90044:intron | 45.0% | |
| ACAACCCGAGTCAAAAGATC+CGG | + | chr7.4:73323420-73323439 | None:intergenic | 45.0% | |
| AGGATAAGGGACATCCTCAT+TGG | - | chr7.4:73323262-73323281 | MS.gene90044:intron | 45.0% | |
| AGTCCAACACAATCTTCGTC+TGG | - | chr7.4:73323512-73323531 | MS.gene90044:intron | 45.0% | |
| AGTTGCAGGAAACGTCTTGA+TGG | - | chr7.4:73321912-73321931 | MS.gene90044:intron | 45.0% | |
| ATGAAAAGAGACTGTGGCTG+AGG | + | chr7.4:73321960-73321979 | None:intergenic | 45.0% | |
| ATGAGGTTAAGAGGAGTTGC+AGG | - | chr7.4:73321898-73321917 | MS.gene90044:intron | 45.0% | |
| ATGCTGCAAATGGGTCCTAA+TGG | - | chr7.4:73323650-73323669 | MS.gene90044:CDS | 45.0% | |
| CAAGAAATTCTCCCGAAGTC+CGG | - | chr7.4:73323285-73323304 | MS.gene90044:intron | 45.0% | |
| CAGTGACTCTTCCATTCTTC+TGG | - | chr7.4:73323693-73323712 | MS.gene90044:CDS | 45.0% | |
| CGGAGTTTGATGAGGTTAAG+AGG | - | chr7.4:73321889-73321908 | MS.gene90044:intron | 45.0% | |
| CTACCAAAGTGCAGGATTCT+AGG | + | chr7.4:73323126-73323145 | None:intergenic | 45.0% | |
| GAAAGATAAGCCGAATGGAC+CGG | - | chr7.4:73323583-73323602 | MS.gene90044:intron | 45.0% | |
| GATGTTAACAAAGCAGCACC+TGG | - | chr7.4:73323309-73323328 | MS.gene90044:intron | 45.0% | |
| GCTTCAGTTATGGAAGTTGC+AGG | + | chr7.4:73323189-73323208 | None:intergenic | 45.0% | |
| GGGAGAATTTCTTGCCAATG+AGG | + | chr7.4:73323279-73323298 | None:intergenic | 45.0% | |
| GTCAACACATCAGTGACTGT+TGG | + | chr7.4:73322891-73322910 | None:intergenic | 45.0% | |
| GTTCCAGACGAAGATTGTGT+TGG | + | chr7.4:73323518-73323537 | None:intergenic | 45.0% | |
| TGCAATGGGATGCTGCAAAT+GGG | - | chr7.4:73323641-73323660 | MS.gene90044:CDS | 45.0% | |
| TTACCTCCAACCAACACAAC+AGG | + | chr7.4:73321450-73321469 | None:intergenic | 45.0% | |
| TTCACTTGCGGAGTTTGATG+AGG | - | chr7.4:73321881-73321900 | MS.gene90044:intron | 45.0% | |
| TTGCAATGGGATGCTGCAAA+TGG | - | chr7.4:73323640-73323659 | MS.gene90044:CDS | 45.0% | |
| TTGTTAACATCGCCGGACTT+CGG | + | chr7.4:73323300-73323319 | None:intergenic | 45.0% | |
| ! | GGACCGGTATTTGTTCTAGA+TGG | - | chr7.4:73323599-73323618 | MS.gene90044:intron | 45.0% |
| ! | TCAGCCACAGTCTCTTTTCA+TGG | - | chr7.4:73321959-73321978 | MS.gene90044:intron | 45.0% |
| !! | TGCTGCTTTGTTAACATCGC+CGG | + | chr7.4:73323307-73323326 | None:intergenic | 45.0% |
| CGGCTTATCTTTCGCCTTTC+CGG | + | chr7.4:73323576-73323595 | None:intergenic | 50.0% | |
| GCAGCATCCCATTGCAATGA+AGG | + | chr7.4:73323637-73323656 | None:intergenic | 50.0% | |
| GCAGCCATGAAAAGAGACTG+TGG | + | chr7.4:73321966-73321985 | None:intergenic | 50.0% | |
| GGACCTAGAATCCTGCACTT+TGG | - | chr7.4:73323120-73323139 | MS.gene90044:intron | 50.0% | |
| GGATCAAGATTCCCTGCAGT+TGG | + | chr7.4:73322933-73322952 | None:intergenic | 50.0% | |
| GGTAGGAAGCTCTCTTCTGA+TGG | - | chr7.4:73323390-73323409 | MS.gene90044:intron | 50.0% | |
| GGTTCATCCGCAGGTGAAAA+AGG | - | chr7.4:73323366-73323385 | MS.gene90044:intron | 50.0% | |
| TCATCCGCAGGTGAAAAAGG+TGG | - | chr7.4:73323369-73323388 | MS.gene90044:intron | 50.0% | |
| TGTTAACATCGCCGGACTTC+GGG | + | chr7.4:73323299-73323318 | None:intergenic | 50.0% | |
| TTCACCTGCGGATGAACCAA+CGG | + | chr7.4:73323364-73323383 | None:intergenic | 50.0% | |
| !! | ACGAAGGAGTACTCGTACTC+CGG | - | chr7.4:73323554-73323573 | MS.gene90044:intron | 50.0% |
| !! | ACTCCTGTTGTGTTGGTTGG+AGG | - | chr7.4:73321444-73321463 | MS.gene90044:CDS | 50.0% |
| !! | CAAGCCGGATCTTTTGACTC+GGG | - | chr7.4:73323413-73323432 | MS.gene90044:intron | 50.0% |
| !! | CCTACCACCTTTTTCACCTG+CGG | + | chr7.4:73323376-73323395 | None:intergenic | 50.0% |
| !! | GCAAGCCGGATCTTTTGACT+CGG | - | chr7.4:73323412-73323431 | MS.gene90044:intron | 50.0% |
| !! | GGATTTGAGGCTTGGTGATC+AGG | - | chr7.4:73321211-73321230 | MS.gene90044:CDS | 50.0% |
| CCGCAGGTGAAAAAGGTGGT+AGG | - | chr7.4:73323373-73323392 | MS.gene90044:intron | 55.0% | |
| CCTATCAGCCATCCTATCCG+CGG | - | chr7.4:73323336-73323355 | MS.gene90044:intron | 55.0% | |
| GCTCTCTTCTGATGGCAAGC+CGG | - | chr7.4:73323398-73323417 | MS.gene90044:intron | 55.0% | |
| GGATGGCTGATAGGAGTTCC+AGG | + | chr7.4:73323330-73323349 | None:intergenic | 55.0% | |
| GGTTCTGCCAACAATGCAGC+AGG | - | chr7.4:73321478-73321497 | MS.gene90044:CDS | 55.0% | |
| TCTGAGGGCTACCAAAGTGC+AGG | + | chr7.4:73323134-73323153 | None:intergenic | 55.0% | |
| TGGTTGGAGGTAAGCAGCAG+AGG | - | chr7.4:73321457-73321476 | MS.gene90044:CDS | 55.0% | |
| ! | GGAGTACTCGTACTCCGGAA+AGG | - | chr7.4:73323559-73323578 | MS.gene90044:intron | 55.0% |
| CCGCGGATAGGATGGCTGAT+AGG | + | chr7.4:73323339-73323358 | None:intergenic | 60.0% | |
| CAACGGCACCGCGGATAGGA+TGG | + | chr7.4:73323347-73323366 | None:intergenic | 65.0% | |
| CGGATGAACCAACGGCACCG+CGG | + | chr7.4:73323356-73323375 | None:intergenic | 65.0% | |
| GAACCAACGGCACCGCGGAT+AGG | + | chr7.4:73323351-73323370 | None:intergenic | 65.0% | |
| !! | CATCCTATCCGCGGTGCCGT+TGG | - | chr7.4:73323345-73323364 | MS.gene90044:intron | 65.0% |
| !! | GGTGCCGTTGGTTCATCCGC+AGG | - | chr7.4:73323357-73323376 | MS.gene90044:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 73321209 | 73323721 | 73321209 | ID=MS.gene90044 |
| chr7.4 | mRNA | 73321209 | 73323721 | 73321209 | ID=MS.gene90044.t1;Parent=MS.gene90044 |
| chr7.4 | exon | 73323601 | 73323721 | 73323601 | ID=MS.gene90044.t1.exon1;Parent=MS.gene90044.t1 |
| chr7.4 | CDS | 73323601 | 73323721 | 73323601 | ID=cds.MS.gene90044.t1;Parent=MS.gene90044.t1 |
| chr7.4 | exon | 73323431 | 73323530 | 73323431 | ID=MS.gene90044.t1.exon2;Parent=MS.gene90044.t1 |
| chr7.4 | CDS | 73323431 | 73323530 | 73323431 | ID=cds.MS.gene90044.t1;Parent=MS.gene90044.t1 |
| chr7.4 | exon | 73322919 | 73323055 | 73322919 | ID=MS.gene90044.t1.exon3;Parent=MS.gene90044.t1 |
| chr7.4 | CDS | 73322919 | 73323055 | 73322919 | ID=cds.MS.gene90044.t1;Parent=MS.gene90044.t1 |
| chr7.4 | exon | 73321543 | 73321809 | 73321543 | ID=MS.gene90044.t1.exon4;Parent=MS.gene90044.t1 |
| chr7.4 | CDS | 73321543 | 73321809 | 73321543 | ID=cds.MS.gene90044.t1;Parent=MS.gene90044.t1 |
| chr7.4 | exon | 73321209 | 73321513 | 73321209 | ID=MS.gene90044.t1.exon5;Parent=MS.gene90044.t1 |
| chr7.4 | CDS | 73321209 | 73321513 | 73321209 | ID=cds.MS.gene90044.t1;Parent=MS.gene90044.t1 |
| Gene Sequence |
| Protein sequence |
