AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90102

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90102.t1 MTR_1g116790 88.952 353 17 7 1 341 1 343 1.04e-180 503
MS.gene90102.t1 MTR_1g052470 39.382 259 125 7 95 335 126 370 9.64e-41 147
MS.gene90102.t1 MTR_4g065870 62.617 107 39 1 234 339 325 431 1.29e-37 139
MS.gene90102.t1 MTR_2g098310 61.404 114 39 2 229 339 297 408 5.83e-37 137
MS.gene90102.t1 MTR_8g036235 33.247 385 167 12 16 335 29 388 1.42e-36 136
MS.gene90102.t1 MTR_4g033295 58.947 95 39 0 245 339 100 194 1.04e-33 123
MS.gene90102.t1 MTR_4g065870 66.304 92 30 1 234 324 325 416 2.65e-33 127
MS.gene90102.t1 MTR_2g098310 62.376 101 33 2 229 326 297 395 6.52e-33 126
MS.gene90102.t1 MTR_3g028520 38.521 257 115 10 96 336 166 395 2.75e-32 124
MS.gene90102.t1 MTR_3g027650 38.521 257 115 10 96 336 166 395 2.75e-32 124
MS.gene90102.t1 MTR_4g033295 62.651 83 31 0 245 327 100 182 5.37e-31 115
MS.gene90102.t1 MTR_3g027650 39.184 245 106 10 96 324 166 383 2.72e-30 119
MS.gene90102.t1 MTR_2g098310 46.980 149 39 3 229 339 297 443 6.93e-30 119
MS.gene90102.t1 MTR_8g036235 31.609 348 154 11 16 301 29 354 4.16e-25 105
MS.gene90102.t1 MTR_2g098310 63.158 76 23 2 229 301 297 370 1.73e-22 97.8
MS.gene90102.t1 MTR_4g033295 67.213 61 20 0 245 305 100 160 3.24e-22 92.8
MS.gene90102.t1 MTR_4g065870 65.217 69 23 1 234 301 325 393 7.06e-22 95.9
MS.gene90102.t1 MTR_3g027650 35.586 222 100 10 96 301 166 360 1.95e-18 85.5
MS.gene90102.t1 MTR_1g052470 33.498 203 103 7 95 279 126 314 5.00e-15 75.1
MS.gene90102.t1 MTR_4g131160 53.846 65 29 1 262 326 195 258 6.40e-14 72.4
MS.gene90102.t1 MTR_4g131160 53.846 65 29 1 262 326 198 261 6.85e-14 72.4
MS.gene90102.t1 MTR_6g052280 49.315 73 34 2 231 301 21 92 1.82e-12 64.3
MS.gene90102.t1 MTR_1g080890 50.769 65 31 1 262 326 192 255 3.96e-12 67.0
MS.gene90102.t1 MTR_3g498825 50.000 64 32 0 263 326 147 210 8.57e-12 65.9
MS.gene90102.t1 MTR_8g012290 47.059 68 36 0 263 330 291 358 1.98e-11 65.1
MS.gene90102.t1 MTR_8g012290 47.059 68 36 0 263 330 291 358 1.99e-11 65.1
MS.gene90102.t1 MTR_3g116770 47.059 68 36 0 263 330 191 258 2.50e-11 64.7
MS.gene90102.t1 MTR_3g116770 47.059 68 36 0 263 330 191 258 2.56e-11 64.7
MS.gene90102.t1 MTR_5g005110 50.000 68 33 1 262 329 223 289 3.08e-11 63.9
MS.gene90102.t1 MTR_8g062240 46.377 69 37 0 263 331 151 219 3.13e-11 63.5
MS.gene90102.t1 MTR_1g018090 50.000 68 33 1 262 329 273 339 3.18e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90102.t1 AT1G05805 43.360 369 122 13 27 339 22 359 9.97e-70 222
MS.gene90102.t1 AT2G43140 49.817 273 77 12 92 339 71 308 2.84e-62 201
MS.gene90102.t1 AT2G43140 54.673 214 62 8 134 339 25 211 5.77e-59 189
MS.gene90102.t1 AT1G51140 61.765 102 35 1 234 335 279 376 3.12e-36 135
MS.gene90102.t1 AT1G35460 61.290 93 36 0 247 339 165 257 6.52e-36 131
MS.gene90102.t1 AT2G42280 71.429 84 24 0 256 339 272 355 9.72e-35 130
MS.gene90102.t1 AT4G09180 60.870 92 36 0 248 339 169 260 1.06e-33 125
MS.gene90102.t1 AT2G42280 79.710 69 14 0 256 324 272 340 5.09e-31 120
MS.gene90102.t1 AT1G35460 57.500 80 26 2 234 305 144 223 2.55e-23 96.7
MS.gene90102.t1 AT2G24260 55.385 65 28 1 262 326 34 97 6.58e-14 70.9
MS.gene90102.t1 AT2G24260 55.385 65 28 1 262 326 137 200 1.19e-13 71.6
MS.gene90102.t1 AT5G58010 50.769 65 31 1 262 326 98 161 2.00e-13 70.5
MS.gene90102.t1 AT4G30980 53.846 65 29 1 262 326 129 192 2.22e-13 70.5
MS.gene90102.t1 AT4G30980 53.846 65 29 1 262 326 177 240 3.15e-13 70.1
MS.gene90102.t1 AT1G25330 45.833 72 37 1 255 326 98 167 2.42e-12 66.2
MS.gene90102.t1 AT4G34530 50.000 64 32 0 263 326 172 235 3.80e-12 67.0
MS.gene90102.t1 AT5G50915 44.737 76 40 1 255 330 130 203 6.46e-12 65.9
MS.gene90102.t1 AT5G50915 44.737 76 40 1 255 330 130 203 6.46e-12 65.9
MS.gene90102.t1 AT5G50915 44.737 76 40 1 255 330 130 203 7.44e-12 65.5
MS.gene90102.t1 AT5G50915 44.737 76 40 1 255 330 130 203 7.44e-12 65.5
MS.gene90102.t1 AT1G68920 44.737 76 41 1 255 330 295 369 1.07e-11 66.2
MS.gene90102.t1 AT1G68920 44.737 76 41 1 255 330 296 370 1.14e-11 65.9
MS.gene90102.t1 AT1G68920 44.737 76 41 1 255 330 296 370 1.14e-11 65.9
MS.gene90102.t1 AT1G68920 44.737 76 41 1 255 330 296 370 1.14e-11 65.9
MS.gene90102.t1 AT1G26260 45.333 75 38 1 255 326 190 264 1.45e-11 65.5
MS.gene90102.t1 AT1G26260 45.333 75 38 1 255 326 212 286 1.47e-11 65.5
MS.gene90102.t1 AT1G26260 45.333 75 38 1 255 326 212 286 1.47e-11 65.5
MS.gene90102.t1 AT1G26260 45.333 75 38 1 255 326 212 286 1.47e-11 65.5
MS.gene90102.t1 AT1G26260 45.333 75 38 1 255 326 212 286 1.47e-11 65.5
MS.gene90102.t1 AT1G26260 45.333 75 38 1 255 326 161 235 1.70e-11 65.1
MS.gene90102.t1 AT3G07340 47.059 68 36 0 263 330 258 325 3.87e-11 64.3
MS.gene90102.t1 AT3G07340 47.059 68 36 0 263 330 258 325 4.44e-11 64.3
MS.gene90102.t1 AT5G48560 43.421 76 41 1 255 330 295 368 5.28e-11 63.9
MS.gene90102.t1 AT4G36540 48.438 64 33 0 263 326 141 204 5.31e-11 63.2
MS.gene90102.t1 AT4G36540 48.438 64 33 0 263 326 141 204 5.34e-11 63.2
MS.gene90102.t1 AT5G48560 43.421 76 41 1 255 330 295 368 5.65e-11 63.9
MS.gene90102.t1 AT2G42300 41.892 74 42 1 254 326 175 248 7.15e-11 63.2
MS.gene90102.t1 AT2G42300 41.892 74 42 1 254 326 175 248 9.10e-11 62.0

Find 89 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGTTGTTGTTATTATTAT+CGG 0.271568 1.4:+88541131 None:intergenic
TTATTCAGACATGCTGGATT+TGG 0.325679 1.4:-88537975 MS.gene90102:CDS
GGAGGATCACGCCTTCTTCC+TGG 0.332014 1.4:-88541625 MS.gene90102:CDS
CCCAGGTATTGGTACTAGTA+TGG 0.340957 1.4:+88541163 None:intergenic
TCCTCGTAGCATTGCTGAAC+GGG 0.362115 1.4:-88540785 MS.gene90102:intron
GGTCAAGCTGGTGGCTTTGA+TGG 0.364612 1.4:-88541511 MS.gene90102:CDS
AAGATCTCTGCTGTTGTTGT+TGG 0.370571 1.4:+88541542 None:intergenic
TTGTTGTTGTTATTATTATC+GGG 0.382053 1.4:+88541132 None:intergenic
TTTACAAGGGACAGAATCTT+GGG 0.382108 1.4:+88540837 None:intergenic
AATTATACCTTATCCATGTT+AGG 0.394411 1.4:+88540605 None:intergenic
GCATCAGCAGCAGCTGGAAA+TGG 0.408966 1.4:-88541192 MS.gene90102:CDS
AAATAATGTTGTCCCGTTCC+AGG 0.410987 1.4:+88541607 None:intergenic
TTGAGAAGAAGAAAATACTA+TGG 0.436830 1.4:+88541101 None:intergenic
TAGTCTCCCACAAACTTCTC+TGG 0.449517 1.4:-88540887 MS.gene90102:CDS
TTCAGACATGCTGGATTTGG+CGG 0.454145 1.4:-88537972 MS.gene90102:CDS
TCACGCCTTCTTCCTGGAAC+GGG 0.457043 1.4:-88541619 MS.gene90102:CDS
GTATCGTCCACCTTCCTCAT+CGG 0.462261 1.4:-88541770 MS.gene90102:CDS
TGGCAAGTTGAAGAAGTTGC+AGG 0.465868 1.4:-88540636 MS.gene90102:CDS
GAGAGAAGAACTAGAATAAG+TGG 0.469542 1.4:-88540656 MS.gene90102:CDS
TATGATTGAGAGTGGCTAGA+TGG 0.473699 1.4:+88541443 None:intergenic
AGGTCTTCAAACTCAAGTTC+AGG 0.476074 1.4:-88537936 MS.gene90102:intron
GGGGCCTCCACCCCAGGTAT+TGG 0.479871 1.4:+88541152 None:intergenic
ACAGAGCTCCATCAGTCAAA+CGG 0.480020 1.4:-88541716 MS.gene90102:CDS
TATCGTCCACCTTCCTCATC+GGG 0.481788 1.4:-88541769 MS.gene90102:CDS
CAGAGCTCCATCAGTCAAAC+GGG 0.487084 1.4:-88541715 MS.gene90102:CDS
CATAATAACAATAACAATAA+CGG 0.488709 1.4:-88541424 MS.gene90102:intron
ATTATCGGGGCCTCCACCCC+AGG 0.489981 1.4:+88541146 None:intergenic
ACCACTGTGGATGCCATCAT+AGG 0.495661 1.4:-88541652 MS.gene90102:CDS
ATGAGTGGCGCATCCACGCT+TGG 0.498051 1.4:+88540807 None:intergenic
AAGAAGGTCGGGATCATCAT+TGG 0.499212 1.4:+88541014 None:intergenic
AACAAGTTATTCAGACATGC+TGG 0.500068 1.4:-88537981 MS.gene90102:CDS
CCCACAAACTTCTCTGGAGA+TGG 0.503550 1.4:-88540881 MS.gene90102:CDS
AAGTCTGAATTGAGTTTCAC+TGG 0.510691 1.4:-88541264 MS.gene90102:CDS
CCTTGTACCTAACATGGATA+AGG 0.512854 1.4:-88540612 MS.gene90102:intron
CCTTATCCATGTTAGGTACA+AGG 0.519581 1.4:+88540612 None:intergenic
CAAACGGGTCTCACAAGGTA+TGG 0.525076 1.4:-88541700 MS.gene90102:CDS
AGGCAATGTAGAAGAAGGTC+GGG 0.527337 1.4:+88541003 None:intergenic
TCCATACTAGTACCAATACC+TGG 0.528579 1.4:-88541164 MS.gene90102:CDS
GTGGTGTTGAGGAGAGAGCT+AGG 0.530531 1.4:+88541670 None:intergenic
GATTATGCATCAGCAGCAGC+TGG 0.531366 1.4:-88541198 MS.gene90102:CDS
GGCTAGATGGTTGAGAAAGC+CGG 0.532966 1.4:+88541456 None:intergenic
TGTACTTTGTTTGCATCCGC+AGG 0.534587 1.4:+88537673 None:intergenic
GAATTGAGTTTCACTGGTGG+AGG 0.537805 1.4:-88541258 MS.gene90102:CDS
GTTGTCCCGTTCCAGGAAGA+AGG 0.539397 1.4:+88541614 None:intergenic
CCATCTCCAGAGAAGTTTGT+GGG 0.544047 1.4:+88540881 None:intergenic
TGTAAAATCCGTGCCAAGCG+TGG 0.544695 1.4:-88540820 MS.gene90102:CDS
GGGGAATATTATGCATAAGC+TGG 0.546019 1.4:+88540857 None:intergenic
TGGCGCATCCACGCTTGGCA+CGG 0.548021 1.4:+88540812 None:intergenic
CCTCAATGCCCTCGAAACTC+AGG 0.548042 1.4:-88540983 MS.gene90102:intron
ATCCTCGTAGCATTGCTGAA+CGG 0.552987 1.4:-88540786 MS.gene90102:CDS
TGTGAGACCCGTTTGACTGA+TGG 0.553828 1.4:+88541708 None:intergenic
AGTACCAATACCTGGGGTGG+AGG 0.556362 1.4:-88541156 MS.gene90102:CDS
TCCATCTCCAGAGAAGTTTG+TGG 0.557386 1.4:+88540880 None:intergenic
TGATCCTCCTACTCCTATGA+TGG 0.563521 1.4:+88541639 None:intergenic
GAGATAGTACCTGAGTTTCG+AGG 0.564156 1.4:+88540974 None:intergenic
TGTTGTTGTTATTATTATCG+GGG 0.564933 1.4:+88541133 None:intergenic
TCTTCTTACGAAGGTCAAGC+TGG 0.565420 1.4:-88541523 MS.gene90102:CDS
ATCACGCCTTCTTCCTGGAA+CGG 0.566174 1.4:-88541620 MS.gene90102:CDS
CATTGAGGCAATGTAGAAGA+AGG 0.573373 1.4:+88540998 None:intergenic
CCTGAGTTTCGAGGGCATTG+AGG 0.579102 1.4:+88540983 None:intergenic
AGATGGTTGAGAAAGCCGGC+TGG 0.579941 1.4:+88541460 None:intergenic
ATTGTTATTATGATTGAGAG+TGG 0.580253 1.4:+88541435 None:intergenic
GAGGCAATGTAGAAGAAGGT+CGG 0.583589 1.4:+88541002 None:intergenic
GTGGATGCCATCATAGGAGT+AGG 0.587569 1.4:-88541646 MS.gene90102:CDS
CTGTTGTTGCTGAGACGAAG+AGG 0.588667 1.4:+88541735 None:intergenic
TTGGCGGTTCAACATATCAA+AGG 0.593157 1.4:-88537956 MS.gene90102:CDS
CCATACTAGTACCAATACCT+GGG 0.597961 1.4:-88541163 MS.gene90102:CDS
AGATAGTACCTGAGTTTCGA+GGG 0.598370 1.4:+88540975 None:intergenic
CGTCAGAAAAGCTCTCCAGC+CGG 0.607974 1.4:-88541475 MS.gene90102:CDS
AGCAATGCTACGAGGATGAG+TGG 0.612328 1.4:+88540792 None:intergenic
GATGCCATCATAGGAGTAGG+AGG 0.612834 1.4:-88541643 MS.gene90102:CDS
GAAGAAGAACCCGATGAGGA+AGG 0.617996 1.4:+88541760 None:intergenic
GAAGAACCCGATGAGGAAGG+TGG 0.619178 1.4:+88541763 None:intergenic
TTGATTGAATTGCAGCTGGG+GGG 0.621095 1.4:-88541317 MS.gene90102:intron
ATCCGCAGGTACAATTCTCA+AGG 0.622189 1.4:+88537687 None:intergenic
TCAGTCAAACGGGTCTCACA+AGG 0.625307 1.4:-88541705 MS.gene90102:CDS
ACTAGTACCAATACCTGGGG+TGG 0.626810 1.4:-88541159 MS.gene90102:CDS
TGGCATCCACAGTGGTGTTG+AGG 0.637238 1.4:+88541659 None:intergenic
TCTTACGAAGGTCAAGCTGG+TGG 0.649831 1.4:-88541520 MS.gene90102:CDS
GACCTTGAGAATTGTACCTG+CGG 0.654912 1.4:-88537689 MS.gene90102:CDS
GCAGGACCTTGTACCTAACA+TGG 0.655399 1.4:-88540618 MS.gene90102:CDS
TTACAAGGGACAGAATCTTG+GGG 0.662437 1.4:+88540838 None:intergenic
TCTGAATTGAGTTTCACTGG+TGG 0.663147 1.4:-88541261 MS.gene90102:CDS
GGAAGAAGAAGAACCCGATG+AGG 0.673921 1.4:+88541756 None:intergenic
TCCTATGATGGCATCCACAG+TGG 0.685277 1.4:+88541651 None:intergenic
CAGCAGAGATCTTCTTACGA+AGG 0.692275 1.4:-88541532 MS.gene90102:CDS
CTCTCTCCTCAACACCACTG+TGG 0.695914 1.4:-88541665 MS.gene90102:CDS
ACCCGTTCAGCAATGCTACG+AGG 0.708822 1.4:+88540784 None:intergenic
CATACTAGTACCAATACCTG+GGG 0.722107 1.4:-88541162 MS.gene90102:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAATATTTCATTGAT+AGG - chr1.4:88541626-88541645 MS.gene90102:CDS 10.0%
!! TTGAATTATTTATGTATTTA+AGG + chr1.4:88540077-88540096 None:intergenic 10.0%
!! AAATGAATTAATAATAGGTA+AGG + chr1.4:88538895-88538914 None:intergenic 15.0%
!! AATTATGAACTAATTTAACT+TGG + chr1.4:88541249-88541268 None:intergenic 15.0%
!! CATAATAACAATAACAATAA+CGG - chr1.4:88538018-88538037 MS.gene90102:intron 15.0%
!! TCTATTAGAAACTTAATTAA+GGG + chr1.4:88539135-88539154 None:intergenic 15.0%
!!! ATATTTTCTACAATAAGTAT+TGG - chr1.4:88541320-88541339 MS.gene90102:intron 15.0%
!!! ATTTATGTATGATAGTTTTT+AGG + chr1.4:88539995-88540014 None:intergenic 15.0%
!!! CTTTTAGATATATACTTTTA+TGG + chr1.4:88539755-88539774 None:intergenic 15.0%
!!! TCTTACTTTGAAAAATAAAA+AGG + chr1.4:88541174-88541193 None:intergenic 15.0%
!!! TTCGTTTTTTTATAAAACTA+TGG - chr1.4:88539489-88539508 MS.gene90102:intron 15.0%
!!! TTTATGTATGATAGTTTTTA+GGG + chr1.4:88539994-88540013 None:intergenic 15.0%
!! AAAATAAGATAAAGGAAAAG+GGG + chr1.4:88539398-88539417 None:intergenic 20.0%
!! AGCTATTACGTATAATATAA+AGG - chr1.4:88539679-88539698 MS.gene90102:intron 20.0%
!! AGTATATATCTAAAAGAACA+AGG - chr1.4:88539759-88539778 MS.gene90102:intron 20.0%
!! CAAAATAAGATAAAGGAAAA+GGG + chr1.4:88539399-88539418 None:intergenic 20.0%
!! CTAGCAAATGAATTAATAAT+AGG + chr1.4:88538900-88538919 None:intergenic 20.0%
!! GTAGAAAATATTTGAATTAC+TGG + chr1.4:88541311-88541330 None:intergenic 20.0%
!! GTCTATTAGAAACTTAATTA+AGG + chr1.4:88539136-88539155 None:intergenic 20.0%
!! TACCTTAATGATGATAAATT+AGG + chr1.4:88538934-88538953 None:intergenic 20.0%
!! TCTTTGTTAATGATAACTAA+CGG - chr1.4:88539877-88539896 MS.gene90102:intron 20.0%
!! TTCCTAATTTATCATCATTA+AGG - chr1.4:88538929-88538948 MS.gene90102:intron 20.0%
!!! CTTTTCCTTTATCTTATTTT+GGG - chr1.4:88539398-88539417 MS.gene90102:intron 20.0%
!!! GTTGTTGTTGTTATTATTAT+CGG + chr1.4:88538314-88538333 None:intergenic 20.0%
!!! TACTTTGATTTGTTAATCAA+TGG - chr1.4:88540696-88540715 MS.gene90102:intron 20.0%
!!! TTATGTATGATAGTTTTTAG+GGG + chr1.4:88539993-88540012 None:intergenic 20.0%
!!! TTGTTGTTGTTATTATTATC+GGG + chr1.4:88538313-88538332 None:intergenic 20.0%
!!! TTTTCCTTTATCTTATTTTG+GGG - chr1.4:88539399-88539418 MS.gene90102:intron 20.0%
! AAACAGTGTTAAACAAAAAG+GGG + chr1.4:88539167-88539186 None:intergenic 25.0%
! AAAGTAGCTTGAACATTATA+TGG - chr1.4:88541125-88541144 MS.gene90102:CDS 25.0%
! AATAAATTCCCAACTCAATA+AGG + chr1.4:88539441-88539460 None:intergenic 25.0%
! AATAATAGGTAAGGAAAGTT+AGG + chr1.4:88538886-88538905 None:intergenic 25.0%
! AATTATACCTTATCCATGTT+AGG + chr1.4:88538840-88538859 None:intergenic 25.0%
! ACTACTAAGGATAAAAACTA+GGG - chr1.4:88539032-88539051 MS.gene90102:intron 25.0%
! AGTGTTTAACTGTGTATTAT+AGG - chr1.4:88541404-88541423 MS.gene90102:intron 25.0%
! ATAAATTCCCAACTCAATAA+GGG + chr1.4:88539440-88539459 None:intergenic 25.0%
! ATATTCATTTATGAATCTCG+CGG - chr1.4:88539329-88539348 MS.gene90102:intron 25.0%
! CAAACAGTGTTAAACAAAAA+GGG + chr1.4:88539168-88539187 None:intergenic 25.0%
! CCAAAATAAGATAAAGGAAA+AGG + chr1.4:88539400-88539419 None:intergenic 25.0%
! GACATTCAATGAAAACTTAA+GGG + chr1.4:88539074-88539093 None:intergenic 25.0%
! GCATCTTCAATTGAATTTAT+AGG - chr1.4:88541344-88541363 MS.gene90102:intron 25.0%
! TACTACTAAGGATAAAAACT+AGG - chr1.4:88539031-88539050 MS.gene90102:intron 25.0%
! TGACATTCAATGAAAACTTA+AGG + chr1.4:88539075-88539094 None:intergenic 25.0%
! TGTAGTCAAAAATACTACTA+AGG - chr1.4:88539019-88539038 MS.gene90102:intron 25.0%
! TTAGTTCATAATTACAGAGT+AGG - chr1.4:88541256-88541275 MS.gene90102:CDS 25.0%
! TTATTGTCAGTATTGTGTTT+GGG - chr1.4:88539456-88539475 MS.gene90102:intron 25.0%
! TTGAGAAGAAGAAAATACTA+TGG + chr1.4:88538344-88538363 None:intergenic 25.0%
! TTTATGTATTTAAGGACTGA+TGG + chr1.4:88540069-88540088 None:intergenic 25.0%
! TTTATTGTCAGTATTGTGTT+TGG - chr1.4:88539455-88539474 MS.gene90102:intron 25.0%
!! ACAACTTTTGTTAGTGTTAT+TGG + chr1.4:88541047-88541066 None:intergenic 25.0%
!! ATTGTTATTATGATTGAGAG+TGG + chr1.4:88538010-88538029 None:intergenic 25.0%
!! CAAGCTACTTTAAGTTTAAA+TGG + chr1.4:88541116-88541135 None:intergenic 25.0%
!! TGCATAATCAACAACATTTT+CGG + chr1.4:88538233-88538252 None:intergenic 25.0%
!! TGTTGTTGTTATTATTATCG+GGG + chr1.4:88538312-88538331 None:intergenic 25.0%
!!! AGTAGCTTTTTTTCTTTCAT+TGG + chr1.4:88539219-88539238 None:intergenic 25.0%
!!! ATGTGAAGCTCTTTTTAATT+TGG + chr1.4:88541590-88541609 None:intergenic 25.0%
!!! ATTGCTTTGTTTAAAACTAG+AGG - chr1.4:88539919-88539938 MS.gene90102:intron 25.0%
!!! CCTTTTCCTTTATCTTATTT+TGG - chr1.4:88539397-88539416 MS.gene90102:intron 25.0%
!!! TGTGAAGCTCTTTTTAATTT+GGG + chr1.4:88541589-88541608 None:intergenic 25.0%
!!! TTGCTTTGTTTAAAACTAGA+GGG - chr1.4:88539920-88539939 MS.gene90102:intron 25.0%
AAACAGAAGCAGAAAGAAAA+AGG + chr1.4:88538712-88538731 None:intergenic 30.0%
AACAGTGTTAAACAAAAAGG+GGG + chr1.4:88539166-88539185 None:intergenic 30.0%
AAGGGGATGAAATTAAATAC+CGG + chr1.4:88539381-88539400 None:intergenic 30.0%
AAGGTAATGCACACATTAAT+TGG - chr1.4:88538948-88538967 MS.gene90102:intron 30.0%
AATTACTGGTAATACTCTCA+TGG + chr1.4:88541297-88541316 None:intergenic 30.0%
AGAACCCCAAAATAAGATAA+AGG + chr1.4:88539406-88539425 None:intergenic 30.0%
AGTTGTAGAAATAGTTTCAG+TGG - chr1.4:88541061-88541080 MS.gene90102:CDS 30.0%
ATAATTACAGAGTAGGTAGA+TGG - chr1.4:88541263-88541282 MS.gene90102:CDS 30.0%
ATGATAATAGTAAATGAGCC+AGG - chr1.4:88539704-88539723 MS.gene90102:intron 30.0%
ATTCAACTATACAAAGAGTC+AGG - chr1.4:88541215-88541234 MS.gene90102:CDS 30.0%
CTTGTAGTAATGAAGTAGTT+AGG - chr1.4:88538991-88539010 MS.gene90102:intron 30.0%
GAAGCTCATTTACACTAAAA+TGG + chr1.4:88540873-88540892 None:intergenic 30.0%
GCAAACAGTGTTAAACAAAA+AGG + chr1.4:88539169-88539188 None:intergenic 30.0%
GTAGTGAAAAGATATAGTCA+AGG + chr1.4:88541714-88541733 None:intergenic 30.0%
TAAGACAAAGTCAAAGTCAA+TGG - chr1.4:88538058-88538077 MS.gene90102:intron 30.0%
TAGAAATAGTTTCAGTGGAA+TGG - chr1.4:88541066-88541085 MS.gene90102:CDS 30.0%
TAGCAGATAATACAGAGAAT+GGG - chr1.4:88540954-88540973 MS.gene90102:intron 30.0%
TGAGGTTTCACTAAATAACA+TGG + chr1.4:88539951-88539970 None:intergenic 30.0%
TTCAAATCCCTTATTGAGTT+GGG - chr1.4:88539430-88539449 MS.gene90102:intron 30.0%
TTTCAAATCCCTTATTGAGT+TGG - chr1.4:88539429-88539448 MS.gene90102:intron 30.0%
! AAAACTATGGTTGTTTCAAG+TGG - chr1.4:88539502-88539521 MS.gene90102:intron 30.0%
! ATAGCTTTACTTCATGTTGT+TGG + chr1.4:88539665-88539684 None:intergenic 30.0%
! ATGTTATTTAGTGAAACCTC+AGG - chr1.4:88539950-88539969 MS.gene90102:intron 30.0%
! CTTTAAAAAACCAGAAACAG+CGG - chr1.4:88540169-88540188 MS.gene90102:intron 30.0%
! TGTTATTTAGTGAAACCTCA+GGG - chr1.4:88539951-88539970 MS.gene90102:intron 30.0%
!! ATTTTTGATTGAATTGCAGC+TGG - chr1.4:88538121-88538140 MS.gene90102:intron 30.0%
!! TGCTTTGTTTAAAACTAGAG+GGG - chr1.4:88539921-88539940 MS.gene90102:intron 30.0%
!! TTTTTGATTGAATTGCAGCT+GGG - chr1.4:88538122-88538141 MS.gene90102:intron 30.0%
!!! TCCTTTTTTTCGTCTATAAC+CGG - chr1.4:88539359-88539378 MS.gene90102:intron 30.0%
AACAAGTTATTCAGACATGC+TGG - chr1.4:88541461-88541480 MS.gene90102:CDS 35.0%
AAGTCTGAATTGAGTTTCAC+TGG - chr1.4:88538178-88538197 MS.gene90102:intron 35.0%
ACAATAATACTCTCAAGTCC+AGG + chr1.4:88540639-88540658 None:intergenic 35.0%
ACAGTGTTAAACAAAAAGGG+GGG + chr1.4:88539165-88539184 None:intergenic 35.0%
ACCGGTTATAGACGAAAAAA+AGG + chr1.4:88539363-88539382 None:intergenic 35.0%
AGAAAGAAGAATGCTAGACA+TGG - chr1.4:88539801-88539820 MS.gene90102:intron 35.0%
ATTCTACTCAGTAGAAGCTA+CGG + chr1.4:88541544-88541563 None:intergenic 35.0%
CTATTGCAATACATGTATGC+AGG - chr1.4:88538764-88538783 MS.gene90102:intron 35.0%
GAAAGTTAGGAAGCAAAAGT+TGG + chr1.4:88538873-88538892 None:intergenic 35.0%
GAGAGAAGAACTAGAATAAG+TGG - chr1.4:88538786-88538805 MS.gene90102:intron 35.0%
GTAGCAGATAATACAGAGAA+TGG - chr1.4:88540953-88540972 MS.gene90102:intron 35.0%
GTAGTAATGAAGTAGTTAGG+TGG - chr1.4:88538994-88539013 MS.gene90102:intron 35.0%
GTATTGTGTTTGGGAAGATA+TGG - chr1.4:88539465-88539484 MS.gene90102:intron 35.0%
GTGTAACTGAAAGAAAACCT+GGG - chr1.4:88540205-88540224 MS.gene90102:intron 35.0%
GTTATTTAGTGAAACCTCAG+GGG - chr1.4:88539952-88539971 MS.gene90102:intron 35.0%
TAGAATCGTCTGATACTACT+CGG - chr1.4:88540583-88540602 MS.gene90102:intron 35.0%
TCACAGTAAAACATACTCTC+CGG + chr1.4:88540745-88540764 None:intergenic 35.0%
TGTGTAACTGAAAGAAAACC+TGG - chr1.4:88540204-88540223 MS.gene90102:intron 35.0%
TTATTCAGACATGCTGGATT+TGG - chr1.4:88541467-88541486 MS.gene90102:CDS 35.0%
TTTACAAGGGACAGAATCTT+GGG + chr1.4:88538608-88538627 None:intergenic 35.0%
! AACAGTGAGACAGTGATTTT+GGG + chr1.4:88539537-88539556 None:intergenic 35.0%
! GGTTTTCTTTCAGTTACACA+TGG + chr1.4:88540204-88540223 None:intergenic 35.0%
! GTCGAGTTTAAAACTAGAGA+GGG + chr1.4:88539104-88539123 None:intergenic 35.0%
! TGTCGAGTTTAAAACTAGAG+AGG + chr1.4:88539105-88539124 None:intergenic 35.0%
! TTTTACAAGGGACAGAATCT+TGG + chr1.4:88538609-88538628 None:intergenic 35.0%
!! ATGACATTTCCAGCTTGTTA+TGG + chr1.4:88539850-88539869 None:intergenic 35.0%
!! TTTTGATTGAATTGCAGCTG+GGG - chr1.4:88538123-88538142 MS.gene90102:intron 35.0%
!!! CGCTGTTTCTGGTTTTTTAA+AGG + chr1.4:88540171-88540190 None:intergenic 35.0%
AAATAATGTTGTCCCGTTCC+AGG + chr1.4:88537838-88537857 None:intergenic 40.0%
AACTGAAAGAAAACCTGGGT+AGG - chr1.4:88540209-88540228 MS.gene90102:intron 40.0%
AAGATCTCTGCTGTTGTTGT+TGG + chr1.4:88537903-88537922 None:intergenic 40.0%
ACAAATGAACCCCTCAATGA+AGG - chr1.4:88539245-88539264 MS.gene90102:intron 40.0%
ACACTTCCTTTGCTGAAACA+CGG + chr1.4:88540385-88540404 None:intergenic 40.0%
ACATGGATGGAATTGGCATA+AGG - chr1.4:88539818-88539837 MS.gene90102:intron 40.0%
AGAAGAATGCTAGACATGGA+TGG - chr1.4:88539805-88539824 MS.gene90102:intron 40.0%
AGATAGTACCTGAGTTTCGA+GGG + chr1.4:88538470-88538489 None:intergenic 40.0%
AGGAGAATACCATAACAAGC+TGG - chr1.4:88539838-88539857 MS.gene90102:intron 40.0%
AGGTCTTCAAACTCAAGTTC+AGG - chr1.4:88541506-88541525 MS.gene90102:CDS 40.0%
AGTAGCCTCTTAACTTAACG+TGG + chr1.4:88539192-88539211 None:intergenic 40.0%
ATGCTAGACATGGATGGAAT+TGG - chr1.4:88539811-88539830 MS.gene90102:intron 40.0%
CAAAATCACTGTCTCACTGT+TGG - chr1.4:88539536-88539555 MS.gene90102:intron 40.0%
CAGTGTTAAACAAAAAGGGG+GGG + chr1.4:88539164-88539183 None:intergenic 40.0%
CATACTAGTACCAATACCTG+GGG - chr1.4:88538280-88538299 MS.gene90102:intron 40.0%
CATAGAGAAGAAGGACAAGA+AGG - chr1.4:88539298-88539317 MS.gene90102:intron 40.0%
CATCTATGTTCAAAGCAAGC+AGG + chr1.4:88540830-88540849 None:intergenic 40.0%
CATTGAGGCAATGTAGAAGA+AGG + chr1.4:88538447-88538466 None:intergenic 40.0%
CCATACTAGTACCAATACCT+GGG - chr1.4:88538279-88538298 MS.gene90102:intron 40.0%
CCTTATCCATGTTAGGTACA+AGG + chr1.4:88538833-88538852 None:intergenic 40.0%
CCTTGTACCTAACATGGATA+AGG - chr1.4:88538830-88538849 MS.gene90102:intron 40.0%
CTTCTTGTCCTTCTTCTCTA+TGG + chr1.4:88539300-88539319 None:intergenic 40.0%
GGGGAATATTATGCATAAGC+TGG + chr1.4:88538588-88538607 None:intergenic 40.0%
GGTGAATTGTTTCCCTTTAG+AGG - chr1.4:88540717-88540736 MS.gene90102:intron 40.0%
GGTTCAACAACCTTCATTGA+GGG + chr1.4:88539258-88539277 None:intergenic 40.0%
GTAACTCAAGTCACTCTCTT+TGG + chr1.4:88540797-88540816 None:intergenic 40.0%
GTAGCCTCTTAACTTAACGT+GGG + chr1.4:88539191-88539210 None:intergenic 40.0%
GTGGGAGACTATACTGAATT+AGG + chr1.4:88538546-88538565 None:intergenic 40.0%
GTTCAACAACCTTCATTGAG+GGG + chr1.4:88539257-88539276 None:intergenic 40.0%
GTTGTTCTCCATAGAGAAGA+AGG - chr1.4:88539289-88539308 MS.gene90102:intron 40.0%
GTTGTTGAACCACTCAGTAA+AGG - chr1.4:88539267-88539286 MS.gene90102:intron 40.0%
GTTTGCGATCATGACTACAT+TGG - chr1.4:88540608-88540627 MS.gene90102:intron 40.0%
TAAGCTTCTACCGTCAACTT+TGG - chr1.4:88540921-88540940 MS.gene90102:intron 40.0%
TATGATTGAGAGTGGCTAGA+TGG + chr1.4:88538002-88538021 None:intergenic 40.0%
TCCATACTAGTACCAATACC+TGG - chr1.4:88538278-88538297 MS.gene90102:intron 40.0%
TCTGAATTGAGTTTCACTGG+TGG - chr1.4:88538181-88538200 MS.gene90102:intron 40.0%
TGGTTCAACAACCTTCATTG+AGG + chr1.4:88539259-88539278 None:intergenic 40.0%
TTACAAGGGACAGAATCTTG+GGG + chr1.4:88538607-88538626 None:intergenic 40.0%
TTGGCGGTTCAACATATCAA+AGG - chr1.4:88541486-88541505 MS.gene90102:CDS 40.0%
TTTGAGAACCGTAGTTCAGT+TGG - chr1.4:88540271-88540290 MS.gene90102:intron 40.0%
TTTGATTGAATTGCAGCTGG+GGG - chr1.4:88538124-88538143 MS.gene90102:intron 40.0%
TTTGCCCACGTTAAGTTAAG+AGG - chr1.4:88539184-88539203 MS.gene90102:intron 40.0%
! AACTAACGGTGTTAACCCAA+GGG - chr1.4:88539891-88539910 MS.gene90102:intron 40.0%
! CAACAGTGAGACAGTGATTT+TGG + chr1.4:88539538-88539557 None:intergenic 40.0%
! CGATCATGACTACATTGGTT+AGG - chr1.4:88540613-88540632 MS.gene90102:CDS 40.0%
! TAACTAACGGTGTTAACCCA+AGG - chr1.4:88539890-88539909 MS.gene90102:intron 40.0%
! TTGACCACTGTAGTTTGTCT+CGG - chr1.4:88539584-88539603 MS.gene90102:intron 40.0%
!! GAAGCAAAAGTTGGTAGCAT+GGG + chr1.4:88538864-88538883 None:intergenic 40.0%
AAATGAGCCAGGAAAGTTGC+AGG - chr1.4:88539715-88539734 MS.gene90102:intron 45.0%
AACAAAGCAATCACCTCCCT+TGG + chr1.4:88539910-88539929 None:intergenic 45.0%
AACCAGAAACAGCGGAAGTA+AGG - chr1.4:88540177-88540196 MS.gene90102:intron 45.0%
AACGACATCACAGAGAAGAG+AGG - chr1.4:88540310-88540329 MS.gene90102:intron 45.0%
AAGAAGGTCGGGATCATCAT+TGG + chr1.4:88538431-88538450 None:intergenic 45.0%
AAGGTCTGTTGCGAAACAGA+TGG - chr1.4:88540448-88540467 MS.gene90102:intron 45.0%
AATCGTCTGATACTACTCGG+CGG - chr1.4:88540586-88540605 MS.gene90102:intron 45.0%
ACAAAGCAATCACCTCCCTT+GGG + chr1.4:88539909-88539928 None:intergenic 45.0%
ACAGAGCTCCATCAGTCAAA+CGG - chr1.4:88537726-88537745 MS.gene90102:intron 45.0%
ACAGAGGAAGGCAGAAATGA+AGG - chr1.4:88540132-88540151 MS.gene90102:intron 45.0%
ACTAGACCGTGAGAGAGTAA+GGG - chr1.4:88540335-88540354 MS.gene90102:intron 45.0%
ACTATAGCCTGCAACTTTCC+TGG + chr1.4:88539725-88539744 None:intergenic 45.0%
AGGCAATGTAGAAGAAGGTC+GGG + chr1.4:88538442-88538461 None:intergenic 45.0%
ATCCGCAGGTACAATTCTCA+AGG + chr1.4:88541758-88541777 None:intergenic 45.0%
ATCCTCGTAGCATTGCTGAA+CGG - chr1.4:88538656-88538675 MS.gene90102:intron 45.0%
ATTGCCGAGACAAACTACAG+TGG + chr1.4:88539591-88539610 None:intergenic 45.0%
ATTTAGTGAAACCTCAGGGG+TGG - chr1.4:88539955-88539974 MS.gene90102:intron 45.0%
CAGCAGAGATCTTCTTACGA+AGG - chr1.4:88537910-88537929 MS.gene90102:intron 45.0%
CCATCTCCAGAGAAGTTTGT+GGG + chr1.4:88538564-88538583 None:intergenic 45.0%
CTGCTACCATCCAAAGTTGA+CGG + chr1.4:88540934-88540953 None:intergenic 45.0%
CTTCTACCGTCAACTTTGGA+TGG - chr1.4:88540925-88540944 MS.gene90102:intron 45.0%
GAATTGAGTTTCACTGGTGG+AGG - chr1.4:88538184-88538203 MS.gene90102:intron 45.0%
GACCTTGAGAATTGTACCTG+CGG - chr1.4:88541753-88541772 MS.gene90102:CDS 45.0%
GAGATAGTACCTGAGTTTCG+AGG + chr1.4:88538471-88538490 None:intergenic 45.0%
GAGGCAATGTAGAAGAAGGT+CGG + chr1.4:88538443-88538462 None:intergenic 45.0%
GGAGAACAACCTTTACTGAG+TGG + chr1.4:88539279-88539298 None:intergenic 45.0%
GTACCAGACCAGTTTCAGAA+AGG - chr1.4:88540429-88540448 MS.gene90102:intron 45.0%
TAGTCTCCCACAAACTTCTC+TGG - chr1.4:88538555-88538574 MS.gene90102:intron 45.0%
TAGTGTCCGTGTTTCAGCAA+AGG - chr1.4:88540376-88540395 MS.gene90102:intron 45.0%
TCAGACGATTCTACGATCCA+CGG + chr1.4:88540576-88540595 None:intergenic 45.0%
TCCATCTCCAGAGAAGTTTG+TGG + chr1.4:88538565-88538584 None:intergenic 45.0%
TCTTCTTACGAAGGTCAAGC+TGG - chr1.4:88537919-88537938 MS.gene90102:intron 45.0%
TGATCCTCCTACTCCTATGA+TGG + chr1.4:88537806-88537825 None:intergenic 45.0%
TTCAGACATGCTGGATTTGG+CGG - chr1.4:88541470-88541489 MS.gene90102:CDS 45.0%
TTGATTGAATTGCAGCTGGG+GGG - chr1.4:88538125-88538144 MS.gene90102:intron 45.0%
! ATGACTACATTGGTTAGGCC+TGG - chr1.4:88540618-88540637 MS.gene90102:CDS 45.0%
! CGAGTTTGAAGCAGGACTAT+AGG + chr1.4:88540488-88540507 None:intergenic 45.0%
! GCTTGGCACGGATTTTACAA+GGG + chr1.4:88538621-88538640 None:intergenic 45.0%
! TGGCAAGTTGAAGAAGTTGC+AGG - chr1.4:88538806-88538825 MS.gene90102:intron 45.0%
! TGTACTTTGTTTGCATCCGC+AGG + chr1.4:88541772-88541791 None:intergenic 45.0%
! TTGTTTCCCTTTAGAGGAGC+CGG - chr1.4:88540723-88540742 MS.gene90102:intron 45.0%
!! AGACCTTTCTGAAACTGGTC+TGG + chr1.4:88540435-88540454 None:intergenic 45.0%
!! CCCAGGTATTGGTACTAGTA+TGG + chr1.4:88538282-88538301 None:intergenic 45.0%
!! GCAACAGACCTTTCTGAAAC+TGG + chr1.4:88540440-88540459 None:intergenic 45.0%
!! GGAAGCAAAAGTTGGTAGCA+TGG + chr1.4:88538865-88538884 None:intergenic 45.0%
!! TATTATTATTATTATTAGTT+TGG + chr1.4:88538369-88538388 None:intergenic 5.0%
!!! ATTATTATTATTATTAGTTT+GGG + chr1.4:88538368-88538387 None:intergenic 5.0%
AATTGCACTAACCACCCCTG+AGG + chr1.4:88539969-88539988 None:intergenic 50.0%
ACCACTGTGGATGCCATCAT+AGG - chr1.4:88537790-88537809 MS.gene90102:intron 50.0%
ACTAGTACCAATACCTGGGG+TGG - chr1.4:88538283-88538302 MS.gene90102:intron 50.0%
AGCAATGCTACGAGGATGAG+TGG + chr1.4:88538653-88538672 None:intergenic 50.0%
ATACTCTCCGGCTCCTCTAA+AGG + chr1.4:88540733-88540752 None:intergenic 50.0%
ATCACGCCTTCTTCCTGGAA+CGG - chr1.4:88537822-88537841 MS.gene90102:intron 50.0%
CAAACGGGTCTCACAAGGTA+TGG - chr1.4:88537742-88537761 MS.gene90102:intron 50.0%
CAGAGCTCCATCAGTCAAAC+GGG - chr1.4:88537727-88537746 MS.gene90102:intron 50.0%
CAGCAATCCTGGCTGTATGA+CGG - chr1.4:88540537-88540556 MS.gene90102:intron 50.0%
CCTTCCTCTGTCTGAACTGT+GGG + chr1.4:88540123-88540142 None:intergenic 50.0%
CTAGACCGTGAGAGAGTAAG+GGG - chr1.4:88540336-88540355 MS.gene90102:intron 50.0%
CTGTTGTTGCTGAGACGAAG+AGG + chr1.4:88537710-88537729 None:intergenic 50.0%
GAAGAAGAACCCGATGAGGA+AGG + chr1.4:88537685-88537704 None:intergenic 50.0%
GACTAGACCGTGAGAGAGTA+AGG - chr1.4:88540334-88540353 MS.gene90102:intron 50.0%
GAGAACCGTAGTTCAGTTGG+CGG - chr1.4:88540274-88540293 MS.gene90102:intron 50.0%
GATGCCATCATAGGAGTAGG+AGG - chr1.4:88537799-88537818 MS.gene90102:intron 50.0%
GATTATGCATCAGCAGCAGC+TGG - chr1.4:88538244-88538263 MS.gene90102:intron 50.0%
GCAGGACCTTGTACCTAACA+TGG - chr1.4:88538824-88538843 MS.gene90102:intron 50.0%
GGAAGAAGAAGAACCCGATG+AGG + chr1.4:88537689-88537708 None:intergenic 50.0%
GGCTAGATGGTTGAGAAAGC+CGG + chr1.4:88537989-88538008 None:intergenic 50.0%
GTATCGTCCACCTTCCTCAT+CGG - chr1.4:88537672-88537691 MS.gene90102:CDS 50.0%
GTGGATGCCATCATAGGAGT+AGG - chr1.4:88537796-88537815 MS.gene90102:intron 50.0%
GTTTGCCCCTTACTCTCTCA+CGG + chr1.4:88540344-88540363 None:intergenic 50.0%
TACTCTCCGGCTCCTCTAAA+GGG + chr1.4:88540732-88540751 None:intergenic 50.0%
TATCGTCCACCTTCCTCATC+GGG - chr1.4:88537673-88537692 MS.gene90102:CDS 50.0%
TCAGTCAAACGGGTCTCACA+AGG - chr1.4:88537737-88537756 MS.gene90102:intron 50.0%
TCCTATGATGGCATCCACAG+TGG + chr1.4:88537794-88537813 None:intergenic 50.0%
TCCTCGTAGCATTGCTGAAC+GGG - chr1.4:88538657-88538676 MS.gene90102:intron 50.0%
TCTTACGAAGGTCAAGCTGG+TGG - chr1.4:88537922-88537941 MS.gene90102:intron 50.0%
TGTAAAATCCGTGCCAAGCG+TGG - chr1.4:88538622-88538641 MS.gene90102:intron 50.0%
TGTATGACGGCAAGGAACCA+TGG - chr1.4:88540550-88540569 MS.gene90102:intron 50.0%
TGTGAGACCCGTTTGACTGA+TGG + chr1.4:88537737-88537756 None:intergenic 50.0%
TTCACCCACAGTTCAGACAG+AGG - chr1.4:88540116-88540135 MS.gene90102:intron 50.0%
! CCCACAAACTTCTCTGGAGA+TGG - chr1.4:88538561-88538580 MS.gene90102:intron 50.0%
! CGCTTGGCACGGATTTTACA+AGG + chr1.4:88538622-88538641 None:intergenic 50.0%
! GACCTTACTTCCGCTGTTTC+TGG + chr1.4:88540182-88540201 None:intergenic 50.0%
! GCTTTTCTGACGGAGCAAAG+CGG + chr1.4:88537959-88537978 None:intergenic 50.0%
! TAACGGTGTTAACCCAAGGG+AGG - chr1.4:88539894-88539913 MS.gene90102:intron 50.0%
! TCAACTTTTGCTGCCTACCC+AGG + chr1.4:88540225-88540244 None:intergenic 50.0%
! TGAACTCGCGAGTTTGAAGC+AGG + chr1.4:88540496-88540515 None:intergenic 50.0%
AACCGTAGTTCAGTTGGCGG+TGG - chr1.4:88540277-88540296 MS.gene90102:intron 55.0%
ACCCGTTCAGCAATGCTACG+AGG + chr1.4:88538661-88538680 None:intergenic 55.0%
AGATGGTTGAGAAAGCCGGC+TGG + chr1.4:88537985-88538004 None:intergenic 55.0%
AGTACCAATACCTGGGGTGG+AGG - chr1.4:88538286-88538305 MS.gene90102:intron 55.0%
AGTTGAGAACGTGTCGCACG+CGG - chr1.4:88540239-88540258 MS.gene90102:intron 55.0%
ATCCTGGCTGTATGACGGCA+AGG - chr1.4:88540542-88540561 MS.gene90102:intron 55.0%
CATACAGCCAGGATTGCTGG+AGG + chr1.4:88540536-88540555 None:intergenic 55.0%
CCCACAGTTCAGACAGAGGA+AGG - chr1.4:88540120-88540139 MS.gene90102:intron 55.0%
CCTCAATGCCCTCGAAACTC+AGG - chr1.4:88538459-88538478 MS.gene90102:intron 55.0%
CGTCAGAAAAGCTCTCCAGC+CGG - chr1.4:88537967-88537986 MS.gene90102:CDS 55.0%
CGTCATACAGCCAGGATTGC+TGG + chr1.4:88540539-88540558 None:intergenic 55.0%
CTCTCTCCTCAACACCACTG+TGG - chr1.4:88537777-88537796 MS.gene90102:intron 55.0%
GAAGAACCCGATGAGGAAGG+TGG + chr1.4:88537682-88537701 None:intergenic 55.0%
GATTCTACGATCCACGGCCA+TGG + chr1.4:88540570-88540589 None:intergenic 55.0%
GCATCAGCAGCAGCTGGAAA+TGG - chr1.4:88538250-88538269 MS.gene90102:intron 55.0%
GCCTTCCTCTGTCTGAACTG+TGG + chr1.4:88540124-88540143 None:intergenic 55.0%
GTTGTCCCGTTCCAGGAAGA+AGG + chr1.4:88537831-88537850 None:intergenic 55.0%
TCACGCCTTCTTCCTGGAAC+GGG - chr1.4:88537823-88537842 MS.gene90102:intron 55.0%
TGGGGGGTTCACAATCACGA+GGG - chr1.4:88538141-88538160 MS.gene90102:intron 55.0%
TTCCTTGCCGTCATACAGCC+AGG + chr1.4:88540547-88540566 None:intergenic 55.0%
! CGGCTGGAGAGCTTTTCTGA+CGG + chr1.4:88537969-88537988 None:intergenic 55.0%
! GATTGCTGGAGGTGTGTCCA+CGG + chr1.4:88540525-88540544 None:intergenic 55.0%
! GTGGTGTTGAGGAGAGAGCT+AGG + chr1.4:88537775-88537794 None:intergenic 55.0%
! TGGCATCCACAGTGGTGTTG+AGG + chr1.4:88537786-88537805 None:intergenic 55.0%
!! CCTGAGTTTCGAGGGCATTG+AGG + chr1.4:88538462-88538481 None:intergenic 55.0%
!! GGTCAAGCTGGTGGCTTTGA+TGG - chr1.4:88537931-88537950 MS.gene90102:intron 55.0%
ATGAGTGGCGCATCCACGCT+TGG + chr1.4:88538638-88538657 None:intergenic 60.0%
CGCCACCGCCAACTGAACTA+CGG + chr1.4:88540282-88540301 None:intergenic 60.0%
CTGGGGGGTTCACAATCACG+AGG - chr1.4:88538140-88538159 MS.gene90102:intron 60.0%
GGACACACCTCCAGCAATCC+TGG - chr1.4:88540526-88540545 MS.gene90102:intron 60.0%
GGAGGATCACGCCTTCTTCC+TGG - chr1.4:88537817-88537836 MS.gene90102:intron 60.0%
GGGGGGTTCACAATCACGAG+GGG - chr1.4:88538142-88538161 MS.gene90102:intron 60.0%
ACGGCAAGGAACCATGGCCG+TGG - chr1.4:88540556-88540575 MS.gene90102:intron 65.0%
ATTATCGGGGCCTCCACCCC+AGG + chr1.4:88538299-88538318 None:intergenic 65.0%
CTGCTGCTGCTGCTGCTGCT+GGG + chr1.4:88537875-88537894 None:intergenic 65.0%
GTTCAGTTGGCGGTGGCGCA+AGG - chr1.4:88540284-88540303 MS.gene90102:intron 65.0%
TCGCGAGTTCAAACCCGCCG+TGG - chr1.4:88540505-88540524 MS.gene90102:intron 65.0%
TGAGAACGTGTCGCACGCGG+CGG - chr1.4:88540242-88540261 MS.gene90102:intron 65.0%
TGGCGCATCCACGCTTGGCA+CGG + chr1.4:88538633-88538652 None:intergenic 65.0%
! TGCTGGAGGTGTGTCCACGG+CGG + chr1.4:88540522-88540541 None:intergenic 65.0%
CAGTTGGCGGTGGCGCAAGG+AGG - chr1.4:88540287-88540306 MS.gene90102:intron 70.0%
GCTGCTGCTGCTGCTGCTGC+TGG + chr1.4:88537876-88537895 None:intergenic 70.0%
GGGGCCTCCACCCCAGGTAT+TGG + chr1.4:88538293-88538312 None:intergenic 70.0%
! GCTGGAGGTGTGTCCACGGC+GGG + chr1.4:88540521-88540540 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 88537670 88541794 88537670 ID=MS.gene90102
chr1.4 mRNA 88537670 88541794 88537670 ID=MS.gene90102.t1;Parent=MS.gene90102
chr1.4 exon 88541425 88541794 88541425 ID=MS.gene90102.t1.exon1;Parent=MS.gene90102.t1
chr1.4 CDS 88541425 88541794 88541425 ID=cds.MS.gene90102.t1;Parent=MS.gene90102.t1
chr1.4 exon 88540984 88541324 88540984 ID=MS.gene90102.t1.exon2;Parent=MS.gene90102.t1
chr1.4 CDS 88540984 88541324 88540984 ID=cds.MS.gene90102.t1;Parent=MS.gene90102.t1
chr1.4 exon 88540786 88540911 88540786 ID=MS.gene90102.t1.exon3;Parent=MS.gene90102.t1
chr1.4 CDS 88540786 88540911 88540786 ID=cds.MS.gene90102.t1;Parent=MS.gene90102.t1
chr1.4 exon 88540613 88540678 88540613 ID=MS.gene90102.t1.exon4;Parent=MS.gene90102.t1
chr1.4 CDS 88540613 88540678 88540613 ID=cds.MS.gene90102.t1;Parent=MS.gene90102.t1
chr1.4 exon 88537937 88538005 88537937 ID=MS.gene90102.t1.exon5;Parent=MS.gene90102.t1
chr1.4 CDS 88537937 88538005 88537937 ID=cds.MS.gene90102.t1;Parent=MS.gene90102.t1
chr1.4 exon 88537670 88537723 88537670 ID=MS.gene90102.t1.exon6;Parent=MS.gene90102.t1
chr1.4 CDS 88537670 88537723 88537670 ID=cds.MS.gene90102.t1;Parent=MS.gene90102.t1
Gene Sequence

>MS.gene90102

ATGTATCGTCCACCTTCCTCATCGGGTTCTTCTTCTTCCTCTTCGTCTCAGCAACAACAGAGCTCCATCAGTCAAACGGGTCTCACAAGGTATGGTTCTGCACCTAGCTCTCTCCTCAACACCACTGTGGATGCCATCATAGGAGTAGGAGGATCACGCCTTCTTCCTGGAACGGGACAACATTATTTCTCTGATGACTCTACCCAGCAGCAGCAGCAGCAGCAGCAGCACCAACAACAACAGCAGAGATCTTCTTACGAAGGTCAAGCTGGTGGCTTTGATGGATCCGCTTTGCTCCGTCAGAAAAGCTCTCCAGCCGGCTTTCTCAACCATCTAGCCACTCTCAATCATAATAACAATAACAATAACGGTATATGTTTGTTTTTATTAAGACAAAGTCAAAGTCAATGGATTATATTAGATCTCATAAAGAGTAAGTAATAGTACTAGTATTTTTGATTGAATTGCAGCTGGGGGGTTCACAATCACGAGGGGCAATTCAAGATTGAAGTCTGAATTGAGTTTCACTGGTGGAGGACAAGAATGTCTTTCTCGAATATCCGAAAATGTTGTTGATTATGCATCAGCAGCAGCTGGAAATGGATCATTCCATACTAGTACCAATACCTGGGGTGGAGGCCCCGATAATAATAACAACAACAACTCAAATTCCATAGTATTTTCTTCTTCTCAAACCCAAACTAATAATAATAATAATAATAATAATAATAGTAAGAAGCGTTCTAGTAGAACTGACACCAATGATGATCCCGACCTTCTTCTACATTGCCTCAATGCCCTCGAAACTCAGGTACTATCTCTTTTCACAATATTAATTCTTTCATTTTTAGTTACTAATTCAATATTTCTACTCCTAATTCAGTATAGTCTCCCACAAACTTCTCTGGAGATGGACCAGCTTATGCATAATATTCCCCAAGATTCTGTCCCTTGTAAAATCCGTGCCAAGCGTGGATGCGCCACTCATCCTCGTAGCATTGCTGAACGGGTAATTAATTCATTCATTACTCTACTCTTTCCTTTTTCTTTCTGCTTCTGTTTCAAAATACTACTCTCTACTGTATATAACAACTCTATTGCAATACATGTATGCAGGAGAGAAGAACTAGAATAAGTGGCAAGTTGAAGAAGTTGCAGGACCTTGTACCTAACATGGATAAGGTATAATTACCCATGCTACCAACTTTTGCTTCCTAACTTTCCTTACCTATTATTAATTCATTTGCTAGTATTTATGTTTCCTAATTTATCATCATTAAGGTAATGCACACATTAATTGGAATGTTTCAATGTAGTTGTACTTGTAGTAATGAAGTAGTTAGGTGGAATGTAGTCAAAAATACTACTAAGGATAAAAACTAGGGAAAATTACATTGAGCTCCCTTAAGTTTTCATTGAATGTCACAAACACCCTCTCTAGTTTTAAACTCGACACTCATCTCCCTTAATTAAGTTTCTAATAGACACAAACCCCCCCTTTTTGTTTAACACTGTTTGCCCACGTTAAGTTAAGAGGCTACTCATACCAATGAAAGAAAAAAAGCTACTCTACTCACAAATGAACCCCTCAATGAAGGTTGTTGAACCACTCAGTAAAGGTTGTTCTCCATAGAGAAGAAGGACAAGAAGGCAGAAATAATATTCATTTATGAATCTCGCGGTAATTTCTCCTTTTTTTCGTCTATAACCGGTATTTAATTTCATCCCCTTTTCCTTTATCTTATTTTGGGGTTCTATATTTCAAATCCCTTATTGAGTTGGGAATTTATTGTCAGTATTGTGTTTGGGAAGATATGGTTTCGTTTTTTTATAAAACTATGGTTGTTTCAAGTGGAGATTCATACCCAAAATCACTGTCTCACTGTTGGAGATTGCTACTAAAATTTAAATTATTTGACCACTGTAGTTTGTCTCGGCAATCAGTCAAGTTCAAGATACTTATCAGCGATAATCTAGTTTATGAAACTATAGCCAACAACATGAAGTAAAGCTATTACGTATAATATAAAGGTCATGATAATAGTAAATGAGCCAGGAAAGTTGCAGGCTATAGTAGAAAAGCCATAAAAGTATATATCTAAAAGAACAAGGAATCGATGTTGATTTCATGAGAAAGAAGAATGCTAGACATGGATGGAATTGGCATAAGGAGAATACCATAACAAGCTGGAAATGTCATTTGTGCTTCTTTGTTAATGATAACTAACGGTGTTAACCCAAGGGAGGTGATTGCTTTGTTTAAAACTAGAGGGGCTCTCCATGTTATTTAGTGAAACCTCAGGGGTGGTTAGTGCAATTTCCCCTAAAAACTATCATACATAAATAAAACAACATCTAAATCACAACATCAAACTAAGTTAATTAGACATTCATAACCATCAGTCCTTAAATACATAAATAATTCAAATCTAAGTTCATAAATAAATTCACCCACAGTTCAGACAGAGGAAGGCAGAAATGAAGGAAAAAAAAACAGTCCTTTAAAAAACCAGAAACAGCGGAAGTAAGGTCCATGTGTAACTGAAAGAAAACCTGGGTAGGCAGCAAAAGTTGAGAACGTGTCGCACGCGGCGGCACACATTTGAGAACCGTAGTTCAGTTGGCGGTGGCGCAAGGAGGAACGACATCACAGAGAAGAGAGGAGACTAGACCGTGAGAGAGTAAGGGGCAAACTTTTCTTACTTTTAGTGTCCGTGTTTCAGCAAAGGAAGTGTTCAAGAAGCACAAGTGTTTTCACAGTACCAGACCAGTTTCAGAAAGGTCTGTTGCGAAACAGATGGCTCAATTTTGTGATCCTATAGTCCTGCTTCAAACTCGCGAGTTCAAACCCGCCGTGGACACACCTCCAGCAATCCTGGCTGTATGACGGCAAGGAACCATGGCCGTGGATCGTAGAATCGTCTGATACTACTCGGCGGTTTGCGATCATGACTACATTGGTTAGGCCTGGACTTGAGAGTATTATTGTAACAAACTCTTGAATTTTCATGAGTACTTGCAATATCTACTTTGATTTGTTAATCAATGGTGAATTGTTTCCCTTTAGAGGAGCCGGAGAGTATGTTTTACTGTGAATTAGAGTCTTTAATCTTGAATCTTGATGCCAAAGAGAGTGACTTGAGTTACTTTGTACTTGCCTGCTTGCTTTGAACATAGATGAATGTAAGTAATACTACAGTCCATTTTAGTGTAAATGAGCTTCTAAACGACATTTTTCTTTCTATTTTATTTAAGCTTCTACCGTCAACTTTGGATGGTAGCAGTAGCAGATAATACAGAGAATGGGTGTTTCAGCTTCATTTCTTTTCTTTCTAAAATACAAAGTCAATGATAAAATTATTCAAAATCAATTGCCAATAACACTAACAAAAGTTGTAGAAATAGTTTCAGTGGAATGGTTATTCATTCATAGTATTTAACTACCATTTAAACTTAAAGTAGCTTGAACATTATATGGAACTAGAATTTTGCTTATGCTTTCCTTTTTATTTTTCAAAGTAAGATTTATGTGCAAGAATTGAAAAATTCAACTATACAAAGAGTCAGGATCAAGTTCCAAGTTAAATTAGTTCATAATTACAGAGTAGGTAGATGGCTTTTATGCCATGAGAGTATTACCAGTAATTCAAATATTTTCTACAATAAGTATTGGAGCATCTTCAATTGAATTTATAGGATTACTCGATAACATCACATAATATGTATGTCAAACTAGTGTTTAACTGTGTATTATAGGTTGCTTAATGTTGTTTCAAAATGTGACTGTAGCAAACAAGTTATTCAGACATGCTGGATTTGGCGGTTCAACATATCAAAGGTCTTCAAACTCAAGTTCAGGTGTGTAAAGCTACCGTAGCTTCTACTGAGTAGAATATTCTTTATATATATGTATATTCCCAAATTAAAAAGAGCTTCACATGAATACAGCATTCTTAAAAATTAATATTTCATTGATAGGCTAGTACATACTACTGTTAAAAATAAAGTGTTTGCATTCTGTAATTCTTAATACTCTGTTGACCTTGACTATATCTTTTCACTACTTTGCAGAAGCTTCACGAAGACCTTGAGAATTGTACCTGCGGATGCAAACAAAGTACATAA
Protein sequence

>MS.gene90102.t1

MYRPPSSSGSSSSSSSQQQQSSISQTGLTRYGSAPSSLLNTTVDAIIGVGGSRLLPGTGQHYFSDDSTQQQQQQQQHQQQQQRSSYEGQAGGFDGSALLRQKSSPAGFLNHLATLNHNNNNNNAGGFTITRGNSRLKSELSFTGGGQECLSRISENVVDYASAAAGNGSFHTSTNTWGGGPDNNNNNNSNSIVFSSSQTQTNNNNNNNNNSKKRSSRTDTNDDPDLLLHCLNALETQYSLPQTSLEMDQLMHNIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHEDLENCTCGCKQST