Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90105.t1 | XP_024630946.1 | 73.6 | 258 | 35 | 1 | 52 | 276 | 13 | 270 | 7.50E-103 | 383.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90105.t1 | Q7F8R0 | 45.5 | 275 | 111 | 5 | 34 | 273 | 26 | 296 | 2.8e-58 | 226.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90105.t1 | G7ICA7 | 74.4 | 254 | 32 | 1 | 56 | 276 | 5 | 258 | 1.2e-102 | 382.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene90105.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90105.t1 | MTR_1g116940 | 74.803 | 254 | 31 | 1 | 56 | 276 | 5 | 258 | 1.46e-133 | 378 |
| MS.gene90105.t1 | MTR_1g053960 | 49.219 | 256 | 89 | 8 | 57 | 276 | 43 | 293 | 4.51e-69 | 216 |
| MS.gene90105.t1 | MTR_7g093130 | 45.230 | 283 | 106 | 9 | 33 | 273 | 26 | 301 | 4.18e-67 | 211 |
| MS.gene90105.t1 | MTR_1g053960 | 45.690 | 232 | 85 | 8 | 81 | 276 | 1 | 227 | 9.90e-53 | 171 |
| MS.gene90105.t1 | MTR_7g093130 | 43.404 | 235 | 87 | 8 | 81 | 273 | 1 | 231 | 4.98e-49 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90105.t1 | AT3G12130 | 35.315 | 286 | 136 | 8 | 1 | 276 | 1 | 247 | 2.28e-39 | 138 |
| MS.gene90105.t1 | AT5G06770 | 33.333 | 249 | 132 | 5 | 28 | 276 | 3 | 217 | 2.99e-36 | 129 |
| MS.gene90105.t1 | AT5G06770 | 32.258 | 248 | 136 | 4 | 29 | 276 | 24 | 239 | 4.29e-36 | 129 |
| MS.gene90105.t1 | AT5G06770 | 34.234 | 222 | 115 | 4 | 56 | 276 | 21 | 212 | 4.86e-35 | 125 |
| MS.gene90105.t1 | AT5G06770 | 34.234 | 222 | 115 | 4 | 56 | 276 | 21 | 212 | 4.86e-35 | 125 |
| MS.gene90105.t1 | AT5G06770 | 34.234 | 222 | 115 | 4 | 56 | 276 | 21 | 212 | 4.86e-35 | 125 |
| MS.gene90105.t1 | AT5G06770 | 47.778 | 90 | 47 | 0 | 187 | 276 | 78 | 167 | 1.53e-23 | 94.4 |
| MS.gene90105.t1 | AT3G12130 | 50.000 | 98 | 41 | 2 | 187 | 276 | 78 | 175 | 1.01e-22 | 92.4 |
Find 89 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGCTGAAGGTTGCAAATT+TGG | 0.147107 | 1.4:-88481471 | MS.gene90105:CDS |
| CATGGAGCTGCTGCCGGTTT+TGG | 0.155815 | 1.4:-88481316 | MS.gene90105:CDS |
| ACCAAAGGATCCTGCACTTT+TGG | 0.214083 | 1.4:-88480983 | MS.gene90105:CDS |
| CATTTCCTGCATTATGTTCC+TGG | 0.223580 | 1.4:-88481639 | MS.gene90105:CDS |
| TTCAACATGCTTTAGGGTTC+AGG | 0.228038 | 1.4:-88482920 | MS.gene90105:CDS |
| CAGCTGAAGGTTGCAAATTT+GGG | 0.243343 | 1.4:-88481470 | MS.gene90105:CDS |
| TTGGTCTTGAAGTTGTTTGC+AGG | 0.265962 | 1.4:+88481022 | None:intergenic |
| CTTCAAGCTCAATATTTCTA+AGG | 0.277040 | 1.4:+88481155 | None:intergenic |
| TAAAATTTCTGTCACATTCC+AGG | 0.309286 | 1.4:+88480917 | None:intergenic |
| GGGAAGGATGGTGGAACATT+TGG | 0.327695 | 1.4:+88481546 | None:intergenic |
| TATTGAACTTGTTGCACAAC+CGG | 0.331191 | 1.4:+88481493 | None:intergenic |
| GCAGCTCCATGAGCTGGAGG+TGG | 0.349271 | 1.4:+88481328 | None:intergenic |
| CCCAAAAGTGCAGGATCCTT+TGG | 0.352380 | 1.4:+88480982 | None:intergenic |
| ATTTCCTGCATTATGTTCCT+GGG | 0.362562 | 1.4:-88481638 | MS.gene90105:CDS |
| GCTCCATGAGCTGGAGGTGG+GGG | 0.369225 | 1.4:+88481331 | None:intergenic |
| CTTAGAAATATTGAGCTTGA+AGG | 0.380840 | 1.4:-88481154 | MS.gene90105:CDS |
| ATGGTGAGTGGGAGCTTGGC+AGG | 0.384703 | 1.4:-88481428 | MS.gene90105:CDS |
| AGCTCCATGAGCTGGAGGTG+GGG | 0.391671 | 1.4:+88481330 | None:intergenic |
| ACATTTGGATTTCTACCAAT+TGG | 0.402070 | 1.4:+88481561 | None:intergenic |
| CTAAATGTGAGTCCGGTCTC+TGG | 0.406368 | 1.4:-88481082 | MS.gene90105:CDS |
| CCGGACTCACATTTAGAATA+AGG | 0.406534 | 1.4:+88481089 | None:intergenic |
| CATCTATTATGCAGCACCTC+TGG | 0.411921 | 1.4:-88481684 | MS.gene90105:intron |
| CAGGAACATAATGCAGGAAA+TGG | 0.419367 | 1.4:+88481640 | None:intergenic |
| CAGCTCCATGAGCTGGAGGT+GGG | 0.423034 | 1.4:+88481329 | None:intergenic |
| CACAACCGGGTCTTAGCAAC+TGG | 0.431622 | 1.4:+88481507 | None:intergenic |
| CTACCAATTGGTGGAATAGC+AGG | 0.443500 | 1.4:+88481573 | None:intergenic |
| GCCCATGGTGAGTGGGAGCT+TGG | 0.446486 | 1.4:-88481432 | MS.gene90105:CDS |
| TGCTGCTTGCATTTGTCCCA+TGG | 0.446496 | 1.4:+88481374 | None:intergenic |
| CCAGCTCATGGAGCTGCTGC+CGG | 0.447956 | 1.4:-88481322 | MS.gene90105:CDS |
| CCGGCAGCAGCTCCATGAGC+TGG | 0.455038 | 1.4:+88481322 | None:intergenic |
| AGCACCTCTGGATGTCCATT+TGG | 0.459036 | 1.4:-88481672 | MS.gene90105:CDS |
| TAATGTTAGTGCAACAGAAA+TGG | 0.459865 | 1.4:-88482955 | MS.gene90105:intron |
| AATGCAAGCAGCAGTGTTGA+TGG | 0.467442 | 1.4:-88481364 | MS.gene90105:CDS |
| AGCTCAATATTTCTAAGGTT+AGG | 0.469832 | 1.4:+88481160 | None:intergenic |
| AGTGGCCGACACTCCAAAAC+CGG | 0.472552 | 1.4:+88481303 | None:intergenic |
| AAATGGCATCCCTCGCCAAA+TGG | 0.473103 | 1.4:+88481657 | None:intergenic |
| AGTCCTGCTATTCCACCAAT+TGG | 0.476108 | 1.4:-88481576 | MS.gene90105:CDS |
| AGTCCGGTCTCTGGACCTCC+AGG | 0.487466 | 1.4:-88481073 | MS.gene90105:CDS |
| TGGTCTTGAAGTTGTTTGCA+GGG | 0.488541 | 1.4:+88481023 | None:intergenic |
| AAGGTCATGGACCATGGCAC+TGG | 0.492421 | 1.4:+88481108 | None:intergenic |
| GCGCGAGTATCTTCATATGC+AGG | 0.492758 | 1.4:+88481396 | None:intergenic |
| TTTCCTGGAGGTCCAGAGAC+CGG | 0.505205 | 1.4:+88481070 | None:intergenic |
| ACTGGTGGAGAAGAACCGTC+TGG | 0.507265 | 1.4:+88481525 | None:intergenic |
| CCTTATTCTAAATGTGAGTC+CGG | 0.514189 | 1.4:-88481089 | MS.gene90105:CDS |
| CTCCACCAGTTGCTAAGACC+CGG | 0.514232 | 1.4:-88481512 | MS.gene90105:CDS |
| TTTGGATTTCTACCAATTGG+TGG | 0.514454 | 1.4:+88481564 | None:intergenic |
| GCCAAGCTCCCACTCACCAT+GGG | 0.519083 | 1.4:+88481431 | None:intergenic |
| ACAGATGAATTATGCAAGCC+TGG | 0.520202 | 1.4:-88480935 | MS.gene90105:CDS |
| AAAATGCATACCTACGGCTA+CGG | 0.527237 | 1.4:-88483566 | MS.gene90105:CDS |
| GCACCTTTCCCCAAAAGTGC+AGG | 0.529864 | 1.4:+88480973 | None:intergenic |
| CTCTGGATGTCCATTTGGCG+AGG | 0.529886 | 1.4:-88481667 | MS.gene90105:CDS |
| TGCCAAGCTCCCACTCACCA+TGG | 0.536520 | 1.4:+88481430 | None:intergenic |
| GAAAGGTGCCACTTCGCGCA+TGG | 0.536523 | 1.4:-88480959 | MS.gene90105:CDS |
| TTTCCTGCATTATGTTCCTG+GGG | 0.549338 | 1.4:-88481637 | MS.gene90105:CDS |
| ATTGAACTTGTTGCACAACC+GGG | 0.554392 | 1.4:+88481494 | None:intergenic |
| TATGAAGATACTCGCGCCAT+GGG | 0.559467 | 1.4:-88481390 | MS.gene90105:CDS |
| AAATGCATACCTACGGCTAC+GGG | 0.562948 | 1.4:-88483565 | MS.gene90105:CDS |
| CATCTGTTCCATGCGCGAAG+TGG | 0.569090 | 1.4:+88480951 | None:intergenic |
| TGAGTGTGAGTGAGTGATGT+TGG | 0.569333 | 1.4:+88483506 | None:intergenic |
| GTGGGAGCTTGGCAGGCCCA+CGG | 0.569441 | 1.4:-88481421 | MS.gene90105:CDS |
| GTCTCTCAGATGATCAATGT+TGG | 0.571206 | 1.4:-88481603 | MS.gene90105:CDS |
| AGCTGAAGGTTGCAAATTTG+GGG | 0.572707 | 1.4:-88481469 | MS.gene90105:CDS |
| CGCGAGTATCTTCATATGCA+GGG | 0.573206 | 1.4:+88481397 | None:intergenic |
| ATGCAAGCAGCAGTGTTGAT+GGG | 0.573707 | 1.4:-88481363 | MS.gene90105:CDS |
| GAAGAACCGTCTGGGAAGGA+TGG | 0.574755 | 1.4:+88481534 | None:intergenic |
| ATATGAAGATACTCGCGCCA+TGG | 0.580726 | 1.4:-88481391 | MS.gene90105:CDS |
| TCTTCATATGCAGGGACCGT+GGG | 0.587144 | 1.4:+88481405 | None:intergenic |
| GAACCGTCTGGGAAGGATGG+TGG | 0.589119 | 1.4:+88481537 | None:intergenic |
| GTCACTTTGCCCATGGTGAG+TGG | 0.600587 | 1.4:-88481440 | MS.gene90105:CDS |
| TTCCTGCATTATGTTCCTGG+GGG | 0.602347 | 1.4:-88481636 | MS.gene90105:CDS |
| AACAAGTTCAATACAGCTGA+AGG | 0.602390 | 1.4:-88481483 | MS.gene90105:CDS |
| TAGAATAAGGTCATGGACCA+TGG | 0.602580 | 1.4:+88481102 | None:intergenic |
| TCTGGATGTCCATTTGGCGA+GGG | 0.603444 | 1.4:-88481666 | MS.gene90105:CDS |
| TGGAGAAGAACCGTCTGGGA+AGG | 0.604602 | 1.4:+88481530 | None:intergenic |
| GTGTGAGTGAGTGATGTTGG+TGG | 0.609180 | 1.4:+88483509 | None:intergenic |
| AACCGGGTCTTAGCAACTGG+TGG | 0.615487 | 1.4:+88481510 | None:intergenic |
| TGGTTGAAAATGCATACCTA+CGG | 0.620869 | 1.4:-88483572 | None:intergenic |
| GGTCTTGAAGTTGTTTGCAG+GGG | 0.621193 | 1.4:+88481024 | None:intergenic |
| CTGCGTGAAAACTTTACCAA+AGG | 0.622535 | 1.4:-88480998 | MS.gene90105:CDS |
| TCACTTTGCCCATGGTGAGT+GGG | 0.626927 | 1.4:-88481439 | MS.gene90105:CDS |
| CTCGCCAAATGGACATCCAG+AGG | 0.627517 | 1.4:+88481668 | None:intergenic |
| TCACATTTAGAATAAGGTCA+TGG | 0.629476 | 1.4:+88481095 | None:intergenic |
| CTGGTGGAGAAGAACCGTCT+GGG | 0.629582 | 1.4:+88481526 | None:intergenic |
| GATCAAACAAGCCAGTGCCA+TGG | 0.633360 | 1.4:-88481119 | MS.gene90105:CDS |
| ATCTTCATATGCAGGGACCG+TGG | 0.634772 | 1.4:+88481404 | None:intergenic |
| GTTCCACCATCCTTCCCAGA+CGG | 0.641586 | 1.4:-88481540 | MS.gene90105:CDS |
| ATCGCACTGCCCGTAGCCGT+AGG | 0.645878 | 1.4:+88483556 | None:intergenic |
| GCAGCAGCTCCATGAGCTGG+AGG | 0.660051 | 1.4:+88481325 | None:intergenic |
| GATAAATGTCACTTTGCCCA+TGG | 0.676321 | 1.4:-88481447 | MS.gene90105:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAGTAAATATTTGAA+TGG | + | chr1.4:88482736-88482755 | None:intergenic | 10.0% |
| !! | ATTAATTAATGATTGTTAAT+TGG | + | chr1.4:88481434-88481453 | None:intergenic | 10.0% |
| !! | CATTATTAAAATTGAATGTA+TGG | + | chr1.4:88481521-88481540 | None:intergenic | 15.0% |
| !! | TAGTATTAGTATCATATATT+TGG | + | chr1.4:88482245-88482264 | None:intergenic | 15.0% |
| !! | TTTATATGTTAATTAATGTG+CGG | + | chr1.4:88481250-88481269 | None:intergenic | 15.0% |
| !!! | ATTTACTAATCTTCATTTTT+CGG | + | chr1.4:88481165-88481184 | None:intergenic | 15.0% |
| !!! | TTACTTTTCTAAAATCAATT+CGG | - | chr1.4:88481607-88481626 | MS.gene90105:CDS | 15.0% |
| !! | AATGTGAATTAATGCAAATT+AGG | + | chr1.4:88482457-88482476 | None:intergenic | 20.0% |
| !! | ACATATAAAAGCAAATCAAT+CGG | - | chr1.4:88481261-88481280 | MS.gene90105:intron | 20.0% |
| !! | ATCAGTGATATTTAATTGAT+TGG | + | chr1.4:88481726-88481745 | None:intergenic | 20.0% |
| !! | CTGATATTAGAATATATTGA+CGG | - | chr1.4:88482554-88482573 | MS.gene90105:intron | 20.0% |
| !!! | AAATCATTTTTACAGTTTGA+TGG | + | chr1.4:88482699-88482718 | None:intergenic | 20.0% |
| !!! | AAGCTATTTCTATTGTTATT+AGG | - | chr1.4:88482373-88482392 | MS.gene90105:intron | 20.0% |
| !!! | TCTATTGTTATTAGGATTTT+GGG | - | chr1.4:88482381-88482400 | MS.gene90105:intron | 20.0% |
| !!! | TTCTATTGTTATTAGGATTT+TGG | - | chr1.4:88482380-88482399 | MS.gene90105:intron | 20.0% |
| !!! | TTTACTAATCTTCATTTTTC+GGG | + | chr1.4:88481164-88481183 | None:intergenic | 20.0% |
| ! | AATTAAATATCACTGATGCT+CGG | - | chr1.4:88481729-88481748 | MS.gene90105:intron | 25.0% |
| ! | ATACTCACAATATAAACAAC+AGG | + | chr1.4:88481913-88481932 | None:intergenic | 25.0% |
| ! | CAAACTTGGTCAATATATAT+TGG | - | chr1.4:88481684-88481703 | MS.gene90105:intron | 25.0% |
| ! | CAATATATATTGACCAAGTT+TGG | + | chr1.4:88481686-88481705 | None:intergenic | 25.0% |
| ! | TAAAACGAAGAGTAATAAGA+AGG | + | chr1.4:88481382-88481401 | None:intergenic | 25.0% |
| ! | TCTCAACTTATAGTAATTCT+CGG | + | chr1.4:88482432-88482451 | None:intergenic | 25.0% |
| ! | TGTAGTGAATGATGATATTA+GGG | - | chr1.4:88482060-88482079 | MS.gene90105:intron | 25.0% |
| !! | ATTAATACTAACTTTTGCAG+TGG | + | chr1.4:88483209-88483228 | None:intergenic | 25.0% |
| !!! | AATTTTTTAGTCTGAACAGA+TGG | - | chr1.4:88482750-88482769 | MS.gene90105:intron | 25.0% |
| !!! | CTTTTAGGTTGTGAATATAA+TGG | - | chr1.4:88482088-88482107 | MS.gene90105:intron | 25.0% |
| !!! | GATATTAGGGTTTTACTTTT+AGG | - | chr1.4:88482073-88482092 | MS.gene90105:intron | 25.0% |
| !!! | TTTGAAATTTTGACACTATC+TGG | - | chr1.4:88481789-88481808 | MS.gene90105:intron | 25.0% |
| ACAAGACAAGATAATTCATG+TGG | + | chr1.4:88481941-88481960 | None:intergenic | 30.0% | |
| ACATTTGGATTTCTACCAAT+TGG | + | chr1.4:88482933-88482952 | None:intergenic | 30.0% | |
| ATCTTTAACCTTTCTTTGCT+AGG | - | chr1.4:88482196-88482215 | MS.gene90105:intron | 30.0% | |
| ATTCAGCATCAACATAAGAT+GGG | + | chr1.4:88482156-88482175 | None:intergenic | 30.0% | |
| CGAATGAGAATGAAAGTTAT+GGG | - | chr1.4:88481056-88481075 | MS.gene90105:CDS | 30.0% | |
| CTTAGAAATATTGAGCTTGA+AGG | - | chr1.4:88483337-88483356 | MS.gene90105:intron | 30.0% | |
| GTGTAGTGAATGATGATATT+AGG | - | chr1.4:88482059-88482078 | MS.gene90105:intron | 30.0% | |
| GTTGCTCAGAATAAATGAAA+AGG | - | chr1.4:88481089-88481108 | MS.gene90105:CDS | 30.0% | |
| TAATGTTAGTGCAACAGAAA+TGG | - | chr1.4:88481536-88481555 | MS.gene90105:CDS | 30.0% | |
| TATACATTACATGATCTGTG+AGG | - | chr1.4:88481823-88481842 | MS.gene90105:intron | 30.0% | |
| TCGAATGAGAATGAAAGTTA+TGG | - | chr1.4:88481055-88481074 | MS.gene90105:CDS | 30.0% | |
| TTTGAGCTGAAATAAACCAT+TGG | - | chr1.4:88482111-88482130 | MS.gene90105:intron | 30.0% | |
| ! | AAGTCTTTTCAACATGCTTT+AGG | - | chr1.4:88481564-88481583 | MS.gene90105:CDS | 30.0% |
| ! | AGTCTTTTCAACATGCTTTA+GGG | - | chr1.4:88481565-88481584 | MS.gene90105:CDS | 30.0% |
| ! | CTTCAAGCTCAATATTTCTA+AGG | + | chr1.4:88483339-88483358 | None:intergenic | 30.0% |
| ! | TCACATTTAGAATAAGGTCA+TGG | + | chr1.4:88483399-88483418 | None:intergenic | 30.0% |
| ! | TTGTCGCTTCTGTTTATATT+GGG | - | chr1.4:88482499-88482518 | MS.gene90105:intron | 30.0% |
| !! | AGCTCAATATTTCTAAGGTT+AGG | + | chr1.4:88483334-88483353 | None:intergenic | 30.0% |
| !!! | GGGATAATCTTTACTTTTTG+TGG | - | chr1.4:88482520-88482539 | MS.gene90105:intron | 30.0% |
| !!! | TGTGAAGTAATGTTTTTTCC+TGG | + | chr1.4:88483439-88483458 | None:intergenic | 30.0% |
| AAAGGTTCAAACTCACTCAA+AGG | - | chr1.4:88481107-88481126 | MS.gene90105:CDS | 35.0% | |
| AACAAGTTCAATACAGCTGA+AGG | - | chr1.4:88483008-88483027 | MS.gene90105:intron | 35.0% | |
| AAGCAAATCTGTCACATAAC+AGG | - | chr1.4:88483274-88483293 | MS.gene90105:intron | 35.0% | |
| AAGGTTCAAACTCACTCAAA+GGG | - | chr1.4:88481108-88481127 | MS.gene90105:CDS | 35.0% | |
| ACAAGATGGTTACAAAGAGA+TGG | + | chr1.4:88482599-88482618 | None:intergenic | 35.0% | |
| AGGTGCTAAACTTTCCATTA+GGG | - | chr1.4:88483294-88483313 | MS.gene90105:intron | 35.0% | |
| AGTATCATATATTTGGCCCT+CGG | + | chr1.4:88482238-88482257 | None:intergenic | 35.0% | |
| ATGAGAATGAAAGTTATGGG+TGG | - | chr1.4:88481059-88481078 | MS.gene90105:CDS | 35.0% | |
| ATTCATAACGTACTTTGCTC+AGG | - | chr1.4:88481759-88481778 | MS.gene90105:intron | 35.0% | |
| ATTTCCTGCATTATGTTCCT+GGG | - | chr1.4:88482853-88482872 | MS.gene90105:intron | 35.0% | |
| CAATCGGTAATGTATGTAGT+TGG | - | chr1.4:88481277-88481296 | MS.gene90105:intron | 35.0% | |
| CACTTAAGAGAAGTGATTAG+CGG | + | chr1.4:88481663-88481682 | None:intergenic | 35.0% | |
| CCTTATTCTAAATGTGAGTC+CGG | - | chr1.4:88483402-88483421 | MS.gene90105:intron | 35.0% | |
| GATTCAGCATCAACATAAGA+TGG | + | chr1.4:88482157-88482176 | None:intergenic | 35.0% | |
| GGAGCTATCATTGGAAAAAA+TGG | - | chr1.4:88483241-88483260 | MS.gene90105:intron | 35.0% | |
| TGACCAATTGAACAGAAAAG+TGG | + | chr1.4:88482301-88482320 | None:intergenic | 35.0% | |
| TGAGAATGAAAGTTATGGGT+GGG | - | chr1.4:88481060-88481079 | MS.gene90105:CDS | 35.0% | |
| TTTGGATTTCTACCAATTGG+TGG | + | chr1.4:88482930-88482949 | None:intergenic | 35.0% | |
| ! | CTTGTCGCTTCTGTTTATAT+TGG | - | chr1.4:88482498-88482517 | MS.gene90105:intron | 35.0% |
| ! | GTTGGAAGAAGCTTTTTGAA+TGG | - | chr1.4:88481295-88481314 | MS.gene90105:intron | 35.0% |
| ! | TGTCGCTTCTGTTTATATTG+GGG | - | chr1.4:88482500-88482519 | MS.gene90105:intron | 35.0% |
| ! | TGTTATGTGACAGATTTGCT+TGG | + | chr1.4:88483275-88483294 | None:intergenic | 35.0% |
| !! | TATTGAACTTGTTGCACAAC+CGG | + | chr1.4:88483001-88483020 | None:intergenic | 35.0% |
| !! | TGACCACTTTTCTGTTCAAT+TGG | - | chr1.4:88482295-88482314 | MS.gene90105:intron | 35.0% |
| !!! | GAAGTAATGTTTTTTCCTGG+AGG | + | chr1.4:88483436-88483455 | None:intergenic | 35.0% |
| AAACAGAAGCGACAAGAAGA+TGG | + | chr1.4:88482494-88482513 | None:intergenic | 40.0% | |
| ACAGATGAATTATGCAAGCC+TGG | - | chr1.4:88483556-88483575 | MS.gene90105:CDS | 40.0% | |
| ACAGCTGAAGGTTGCAAATT+TGG | - | chr1.4:88483020-88483039 | MS.gene90105:intron | 40.0% | |
| AGAGAAGTGATTAGCGGTAA+AGG | + | chr1.4:88481657-88481676 | None:intergenic | 40.0% | |
| AGCTGAAGGTTGCAAATTTG+GGG | - | chr1.4:88483022-88483041 | MS.gene90105:intron | 40.0% | |
| AGTATTAATGCTACCCTTGC+TGG | - | chr1.4:88483220-88483239 | MS.gene90105:intron | 40.0% | |
| ATCTGAGTCATGTTCCCTAA+TGG | + | chr1.4:88483311-88483330 | None:intergenic | 40.0% | |
| CAGCTGAAGGTTGCAAATTT+GGG | - | chr1.4:88483021-88483040 | MS.gene90105:intron | 40.0% | |
| CAGGAACATAATGCAGGAAA+TGG | + | chr1.4:88482854-88482873 | None:intergenic | 40.0% | |
| CAGGTGCTAAACTTTCCATT+AGG | - | chr1.4:88483293-88483312 | MS.gene90105:intron | 40.0% | |
| CATTTCCTGCATTATGTTCC+TGG | - | chr1.4:88482852-88482871 | MS.gene90105:intron | 40.0% | |
| CTGCGTGAAAACTTTACCAA+AGG | - | chr1.4:88483493-88483512 | MS.gene90105:intron | 40.0% | |
| CTTCTCTTAAGTGCCAAACT+TGG | - | chr1.4:88481670-88481689 | MS.gene90105:CDS | 40.0% | |
| GAGAATGAAAGTTATGGGTG+GGG | - | chr1.4:88481061-88481080 | MS.gene90105:CDS | 40.0% | |
| GGAAACTTCCTAGCAAAGAA+AGG | + | chr1.4:88482207-88482226 | None:intergenic | 40.0% | |
| GTCTCTCAGATGATCAATGT+TGG | - | chr1.4:88482888-88482907 | MS.gene90105:CDS | 40.0% | |
| GTGTCTTCTAACGTACAAGA+TGG | + | chr1.4:88482613-88482632 | None:intergenic | 40.0% | |
| TAGAATAAGGTCATGGACCA+TGG | + | chr1.4:88483392-88483411 | None:intergenic | 40.0% | |
| TTTCCTGCATTATGTTCCTG+GGG | - | chr1.4:88482854-88482873 | MS.gene90105:intron | 40.0% | |
| ! | AAACCAAGCATTGCCATTGA+AGG | + | chr1.4:88481351-88481370 | None:intergenic | 40.0% |
| ! | CCGGACTCACATTTAGAATA+AGG | + | chr1.4:88483405-88483424 | None:intergenic | 40.0% |
| ! | TGGTCTTGAAGTTGTTTGCA+GGG | + | chr1.4:88483471-88483490 | None:intergenic | 40.0% |
| !! | ATTGAACTTGTTGCACAACC+GGG | + | chr1.4:88483000-88483019 | None:intergenic | 40.0% |
| !! | GATAAATGTCACTTTGCCCA+TGG | - | chr1.4:88483044-88483063 | MS.gene90105:intron | 40.0% |
| !! | TGACGGATTATAAGTTGCAC+CGG | - | chr1.4:88482571-88482590 | MS.gene90105:intron | 40.0% |
| !! | TTCAACATGCTTTAGGGTTC+AGG | - | chr1.4:88481571-88481590 | MS.gene90105:CDS | 40.0% |
| !! | TTGGTCTTGAAGTTGTTTGC+AGG | + | chr1.4:88483472-88483491 | None:intergenic | 40.0% |
| AACAACCAAGCCTTAACCCT+AGG | + | chr1.4:88482019-88482038 | None:intergenic | 45.0% | |
| AGTCCTGCTATTCCACCAAT+TGG | - | chr1.4:88482915-88482934 | MS.gene90105:CDS | 45.0% | |
| ATATGAAGATACTCGCGCCA+TGG | - | chr1.4:88483100-88483119 | MS.gene90105:intron | 45.0% | |
| ATCGTCATCATCATCGCAAG+AGG | - | chr1.4:88481318-88481337 | MS.gene90105:CDS | 45.0% | |
| ATGGAAACCAGATGAGTGCA+GGG | + | chr1.4:88482680-88482699 | None:intergenic | 45.0% | |
| CATCTATTATGCAGCACCTC+TGG | - | chr1.4:88482807-88482826 | MS.gene90105:intron | 45.0% | |
| CGCGAGTATCTTCATATGCA+GGG | + | chr1.4:88483097-88483116 | None:intergenic | 45.0% | |
| CTACCAATTGGTGGAATAGC+AGG | + | chr1.4:88482921-88482940 | None:intergenic | 45.0% | |
| CTCAAAGGGTGAGTTTGAAG+TGG | - | chr1.4:88481122-88481141 | MS.gene90105:CDS | 45.0% | |
| GGTCTTGAAGTTGTTTGCAG+GGG | + | chr1.4:88483470-88483489 | None:intergenic | 45.0% | |
| TATGAAGATACTCGCGCCAT+GGG | - | chr1.4:88483101-88483120 | MS.gene90105:intron | 45.0% | |
| TCCAATGATAGCTCCAGCAA+GGG | + | chr1.4:88483236-88483255 | None:intergenic | 45.0% | |
| TCGTCATCATCATCGCAAGA+GGG | - | chr1.4:88481319-88481338 | MS.gene90105:CDS | 45.0% | |
| TGAGTGTGAGTGAGTGATGT+TGG | + | chr1.4:88480988-88481007 | None:intergenic | 45.0% | |
| TTAACCCTAGGCATGGCAAT+GGG | + | chr1.4:88482007-88482026 | None:intergenic | 45.0% | |
| TTCCAATGATAGCTCCAGCA+AGG | + | chr1.4:88483237-88483256 | None:intergenic | 45.0% | |
| TTCCTGCATTATGTTCCTGG+GGG | - | chr1.4:88482855-88482874 | MS.gene90105:intron | 45.0% | |
| ! | AATGCAAGCAGCAGTGTTGA+TGG | - | chr1.4:88483127-88483146 | MS.gene90105:intron | 45.0% |
| ! | ACCAAAGGATCCTGCACTTT+TGG | - | chr1.4:88483508-88483527 | MS.gene90105:CDS | 45.0% |
| ! | ACGGATTATAAGTTGCACCG+GGG | - | chr1.4:88482573-88482592 | MS.gene90105:intron | 45.0% |
| ! | CAAAGGATCCTGCACTTTTG+GGG | - | chr1.4:88483510-88483529 | MS.gene90105:CDS | 45.0% |
| ! | CCAAAGGATCCTGCACTTTT+GGG | - | chr1.4:88483509-88483528 | MS.gene90105:CDS | 45.0% |
| ! | GGTAAAGTTTTCACGCAGCT+TGG | + | chr1.4:88483491-88483510 | None:intergenic | 45.0% |
| !! | ATGCAAGCAGCAGTGTTGAT+GGG | - | chr1.4:88483128-88483147 | MS.gene90105:intron | 45.0% |
| !! | GACGGATTATAAGTTGCACC+GGG | - | chr1.4:88482572-88482591 | MS.gene90105:intron | 45.0% |
| !! | GCTAAGTAGAAGAGTGCCAA+TGG | + | chr1.4:88482130-88482149 | None:intergenic | 45.0% |
| !!! | GGCTTGGTTGTTTTTGTTGC+AGG | - | chr1.4:88482027-88482046 | MS.gene90105:intron | 45.0% |
| !! | GTAAATAAATAAATAAATAA+AGG | - | chr1.4:88481179-88481198 | MS.gene90105:CDS | 5.0% |
| AAATGGCATCCCTCGCCAAA+TGG | + | chr1.4:88482837-88482856 | None:intergenic | 50.0% | |
| AAGAGGGGAACCACCTTCAA+TGG | - | chr1.4:88481335-88481354 | MS.gene90105:CDS | 50.0% | |
| AAGCGACAAGAAGATGGACG+AGG | + | chr1.4:88482488-88482507 | None:intergenic | 50.0% | |
| ACCCTTGCTGGAGCTATCAT+TGG | - | chr1.4:88483232-88483251 | MS.gene90105:intron | 50.0% | |
| AGCACCTCTGGATGTCCATT+TGG | - | chr1.4:88482819-88482838 | MS.gene90105:intron | 50.0% | |
| ATCTTCATATGCAGGGACCG+TGG | + | chr1.4:88483090-88483109 | None:intergenic | 50.0% | |
| CATTGCCATGCCTAGGGTTA+AGG | - | chr1.4:88482006-88482025 | MS.gene90105:intron | 50.0% | |
| CCACCTTCAATGGCAATGCT+TGG | - | chr1.4:88481345-88481364 | MS.gene90105:CDS | 50.0% | |
| CGTCATCATCATCGCAAGAG+GGG | - | chr1.4:88481320-88481339 | MS.gene90105:CDS | 50.0% | |
| CTAAATGTGAGTCCGGTCTC+TGG | - | chr1.4:88483409-88483428 | MS.gene90105:intron | 50.0% | |
| CTTAACCCTAGGCATGGCAA+TGG | + | chr1.4:88482008-88482027 | None:intergenic | 50.0% | |
| GATCAAACAAGCCAGTGCCA+TGG | - | chr1.4:88483372-88483391 | MS.gene90105:intron | 50.0% | |
| GATGGAAACCAGATGAGTGC+AGG | + | chr1.4:88482681-88482700 | None:intergenic | 50.0% | |
| GCGCGAGTATCTTCATATGC+AGG | + | chr1.4:88483098-88483117 | None:intergenic | 50.0% | |
| GTGTGAGTGAGTGATGTTGG+TGG | + | chr1.4:88480985-88481004 | None:intergenic | 50.0% | |
| TAACCCTAGGCATGGCAATG+GGG | + | chr1.4:88482006-88482025 | None:intergenic | 50.0% | |
| TCACTTTGCCCATGGTGAGT+GGG | - | chr1.4:88483052-88483071 | MS.gene90105:intron | 50.0% | |
| TCTGGATGTCCATTTGGCGA+GGG | - | chr1.4:88482825-88482844 | MS.gene90105:intron | 50.0% | |
| TCTTCATATGCAGGGACCGT+GGG | + | chr1.4:88483089-88483108 | None:intergenic | 50.0% | |
| TGCTAGGAAGTTTCCCTTGC+AGG | - | chr1.4:88482212-88482231 | MS.gene90105:intron | 50.0% | |
| TGGAAACCAGATGAGTGCAG+GGG | + | chr1.4:88482679-88482698 | None:intergenic | 50.0% | |
| TGGTTACAAAGAGATGGCCC+CGG | + | chr1.4:88482593-88482612 | None:intergenic | 50.0% | |
| ! | CCAAGCATTGCCATTGAAGG+TGG | + | chr1.4:88481348-88481367 | None:intergenic | 50.0% |
| ! | CCCAAAAGTGCAGGATCCTT+TGG | + | chr1.4:88483512-88483531 | None:intergenic | 50.0% |
| ! | TGCTGCTTGCATTTGTCCCA+TGG | + | chr1.4:88483120-88483139 | None:intergenic | 50.0% |
| !! | GATCCTGCACTTTTGGGGAA+AGG | - | chr1.4:88483515-88483534 | MS.gene90105:CDS | 50.0% |
| !! | GGGAAGGATGGTGGAACATT+TGG | + | chr1.4:88482948-88482967 | None:intergenic | 50.0% |
| AACCGGGTCTTAGCAACTGG+TGG | + | chr1.4:88482984-88483003 | None:intergenic | 55.0% | |
| AAGGTCATGGACCATGGCAC+TGG | + | chr1.4:88483386-88483405 | None:intergenic | 55.0% | |
| AAGTTTCCCTTGCAGGCCGA+GGG | - | chr1.4:88482219-88482238 | MS.gene90105:intron | 55.0% | |
| ACTGGTGGAGAAGAACCGTC+TGG | + | chr1.4:88482969-88482988 | None:intergenic | 55.0% | |
| AGCCCCCAGGAACATAATGC+AGG | + | chr1.4:88482860-88482879 | None:intergenic | 55.0% | |
| AGTGGCCGACACTCCAAAAC+CGG | + | chr1.4:88483191-88483210 | None:intergenic | 55.0% | |
| CACAACCGGGTCTTAGCAAC+TGG | + | chr1.4:88482987-88483006 | None:intergenic | 55.0% | |
| CATCTGTTCCATGCGCGAAG+TGG | + | chr1.4:88483543-88483562 | None:intergenic | 55.0% | |
| CCAAGCCTTAACCCTAGGCA+TGG | + | chr1.4:88482014-88482033 | None:intergenic | 55.0% | |
| CCATGCCTAGGGTTAAGGCT+TGG | - | chr1.4:88482011-88482030 | MS.gene90105:intron | 55.0% | |
| CTCCACCAGTTGCTAAGACC+CGG | - | chr1.4:88482979-88482998 | MS.gene90105:intron | 55.0% | |
| CTCGCCAAATGGACATCCAG+AGG | + | chr1.4:88482826-88482845 | None:intergenic | 55.0% | |
| CTCTGGATGTCCATTTGGCG+AGG | - | chr1.4:88482824-88482843 | MS.gene90105:intron | 55.0% | |
| CTGGTGGAGAAGAACCGTCT+GGG | + | chr1.4:88482968-88482987 | None:intergenic | 55.0% | |
| GAAGAACCGTCTGGGAAGGA+TGG | + | chr1.4:88482960-88482979 | None:intergenic | 55.0% | |
| GTTACACCCCTGCACTCATC+TGG | - | chr1.4:88482670-88482689 | MS.gene90105:intron | 55.0% | |
| GTTCCACCATCCTTCCCAGA+CGG | - | chr1.4:88482951-88482970 | MS.gene90105:intron | 55.0% | |
| TGGAGAAGAACCGTCTGGGA+AGG | + | chr1.4:88482964-88482983 | None:intergenic | 55.0% | |
| TTTCCTGGAGGTCCAGAGAC+CGG | + | chr1.4:88483424-88483443 | None:intergenic | 55.0% | |
| ! | GCACCTTTCCCCAAAAGTGC+AGG | + | chr1.4:88483521-88483540 | None:intergenic | 55.0% |
| ! | GTCACTTTGCCCATGGTGAG+TGG | - | chr1.4:88483051-88483070 | MS.gene90105:intron | 55.0% |
| !! | GAGACAGCTTTAAAGCCCCC+AGG | + | chr1.4:88482873-88482892 | None:intergenic | 55.0% |
| !!! | TGCTGCCGGTTTTGGAGTGT+CGG | - | chr1.4:88483183-88483202 | MS.gene90105:intron | 55.0% |
| AGCTCCATGAGCTGGAGGTG+GGG | + | chr1.4:88483164-88483183 | None:intergenic | 60.0% | |
| ATGGTGAGTGGGAGCTTGGC+AGG | - | chr1.4:88483063-88483082 | MS.gene90105:intron | 60.0% | |
| ATTTGGCCCTCGGCCTGCAA+GGG | + | chr1.4:88482228-88482247 | None:intergenic | 60.0% | |
| CAGCTCCATGAGCTGGAGGT+GGG | + | chr1.4:88483165-88483184 | None:intergenic | 60.0% | |
| GAACCGTCTGGGAAGGATGG+TGG | + | chr1.4:88482957-88482976 | None:intergenic | 60.0% | |
| GAAGTTTCCCTTGCAGGCCG+AGG | - | chr1.4:88482218-88482237 | MS.gene90105:intron | 60.0% | |
| GCCAAGCTCCCACTCACCAT+GGG | + | chr1.4:88483063-88483082 | None:intergenic | 60.0% | |
| TATTTGGCCCTCGGCCTGCA+AGG | + | chr1.4:88482229-88482248 | None:intergenic | 60.0% | |
| TGCCAAGCTCCCACTCACCA+TGG | + | chr1.4:88483064-88483083 | None:intergenic | 60.0% | |
| !! | GAAAGGTGCCACTTCGCGCA+TGG | - | chr1.4:88483532-88483551 | MS.gene90105:CDS | 60.0% |
| !!! | CATGGAGCTGCTGCCGGTTT+TGG | - | chr1.4:88483175-88483194 | MS.gene90105:intron | 60.0% |
| AGTCCGGTCTCTGGACCTCC+AGG | - | chr1.4:88483418-88483437 | MS.gene90105:intron | 65.0% | |
| ATCGCACTGCCCGTAGCCGT+AGG | + | chr1.4:88480938-88480957 | None:intergenic | 65.0% | |
| CCAGCTCATGGAGCTGCTGC+CGG | - | chr1.4:88483169-88483188 | MS.gene90105:intron | 65.0% | |
| CCCTAGGCATGGCAATGGGG+CGG | + | chr1.4:88482003-88482022 | None:intergenic | 65.0% | |
| CCGCCCCATTGCCATGCCTA+GGG | - | chr1.4:88482000-88482019 | MS.gene90105:intron | 65.0% | |
| CCTAGGCATGGCAATGGGGC+GGG | + | chr1.4:88482002-88482021 | None:intergenic | 65.0% | |
| CTAGGCATGGCAATGGGGCG+GGG | + | chr1.4:88482001-88482020 | None:intergenic | 65.0% | |
| GCAGCAGCTCCATGAGCTGG+AGG | + | chr1.4:88483169-88483188 | None:intergenic | 65.0% | |
| GCAGCTCCATGAGCTGGAGG+TGG | + | chr1.4:88483166-88483185 | None:intergenic | 65.0% | |
| GCCCATGGTGAGTGGGAGCT+TGG | - | chr1.4:88483059-88483078 | MS.gene90105:intron | 65.0% | |
| GCTCCATGAGCTGGAGGTGG+GGG | + | chr1.4:88483163-88483182 | None:intergenic | 65.0% | |
| CATGGCAATGGGGCGGGGTG+GGG | + | chr1.4:88481996-88482015 | None:intergenic | 70.0% | |
| CCCGCCCCATTGCCATGCCT+AGG | - | chr1.4:88481999-88482018 | MS.gene90105:intron | 70.0% | |
| CCGGCAGCAGCTCCATGAGC+TGG | + | chr1.4:88483172-88483191 | None:intergenic | 70.0% | |
| GAGCCCCCACCTCCAGCTCA+TGG | - | chr1.4:88483157-88483176 | MS.gene90105:intron | 70.0% | |
| GCATGGCAATGGGGCGGGGT+GGG | + | chr1.4:88481997-88482016 | None:intergenic | 70.0% | |
| GTGGGAGCTTGGCAGGCCCA+CGG | - | chr1.4:88483070-88483089 | MS.gene90105:intron | 70.0% | |
| CAATGGGGCGGGGTGGGGAC+GGG | + | chr1.4:88481991-88482010 | None:intergenic | 75.0% | |
| GCAATGGGGCGGGGTGGGGA+CGG | + | chr1.4:88481992-88482011 | None:intergenic | 75.0% | |
| GGCATGGCAATGGGGCGGGG+TGG | + | chr1.4:88481998-88482017 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 88480928 | 88483585 | 88480928 | ID=MS.gene90105 |
| chr1.4 | mRNA | 88480928 | 88483585 | 88480928 | ID=MS.gene90105.t1;Parent=MS.gene90105 |
| chr1.4 | exon | 88483506 | 88483585 | 88483506 | ID=MS.gene90105.t1.exon1;Parent=MS.gene90105.t1 |
| chr1.4 | CDS | 88483506 | 88483585 | 88483506 | ID=cds.MS.gene90105.t1;Parent=MS.gene90105.t1 |
| chr1.4 | exon | 88482885 | 88482968 | 88482885 | ID=MS.gene90105.t1.exon2;Parent=MS.gene90105.t1 |
| chr1.4 | CDS | 88482885 | 88482968 | 88482885 | ID=cds.MS.gene90105.t1;Parent=MS.gene90105.t1 |
| chr1.4 | exon | 88481297 | 88481692 | 88481297 | ID=MS.gene90105.t1.exon3;Parent=MS.gene90105.t1 |
| chr1.4 | CDS | 88481297 | 88481692 | 88481297 | ID=cds.MS.gene90105.t1;Parent=MS.gene90105.t1 |
| chr1.4 | exon | 88480928 | 88481198 | 88480928 | ID=MS.gene90105.t1.exon4;Parent=MS.gene90105.t1 |
| chr1.4 | CDS | 88480928 | 88481198 | 88480928 | ID=cds.MS.gene90105.t1;Parent=MS.gene90105.t1 |
| Gene Sequence |
| Protein sequence |
