Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90149.t1 | ABD32238.1 | 81.4 | 318 | 31 | 11 | 1 | 309 | 1 | 299 | 8.90E-113 | 416.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90149.t1 | Q2HVP9 | 81.4 | 318 | 31 | 11 | 1 | 309 | 1 | 299 | 6.5e-113 | 416.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene90149.t1 | TF | NOZZLE |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90149.t1 | MTR_2g081240 | 85.000 | 320 | 16 | 12 | 1 | 309 | 1 | 299 | 5.79e-159 | 445 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 60 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTCACTGTTTCAGCTTA+TGG | 0.159665 | 2.3:-17124998 | MS.gene90149:CDS |
CACCAATTGTGGGAAATTTC+AGG | 0.195712 | 2.3:+17125041 | None:intergenic |
TTATTCTGATTCTGATTGTT+AGG | 0.266258 | 2.3:+17126555 | None:intergenic |
TGTGGGAAATTTCAGGTTCT+TGG | 0.268740 | 2.3:+17125048 | None:intergenic |
CAATAACAATAACACTGTTT+TGG | 0.275143 | 2.3:-17126640 | MS.gene90149:CDS |
GGTTGAGAGTGATGAAGATT+TGG | 0.342640 | 2.3:+17126432 | None:intergenic |
AGAACAGAAGGTTGAGGTTG+AGG | 0.346254 | 2.3:+17125590 | None:intergenic |
AGCTCTTTAGAAGGCTCAAA+AGG | 0.358727 | 2.3:+17126465 | None:intergenic |
GGTGGTGGTAACTATGGATA+TGG | 0.361187 | 2.3:-17126516 | MS.gene90149:CDS |
AGTGTTATTGTTATTGTTGT+TGG | 0.365355 | 2.3:+17126647 | None:intergenic |
AACCTGAAATTTCCCACAAT+TGG | 0.372059 | 2.3:-17125043 | MS.gene90149:CDS |
TCAACTCCTACACCTCTTAG+TGG | 0.420541 | 2.3:+17126846 | None:intergenic |
ATCAGAATCAGAATAACAAC+AGG | 0.420921 | 2.3:-17126548 | MS.gene90149:CDS |
ATTGAAGAGAGCTCTTTAGA+AGG | 0.427011 | 2.3:+17126456 | None:intergenic |
AGAAGCAGCTTCACCAATTG+TGG | 0.451010 | 2.3:+17125030 | None:intergenic |
TCATGAACATGATGATGATT+AGG | 0.458805 | 2.3:+17125638 | None:intergenic |
GTTGTTGGTGGTGGTAACTA+TGG | 0.459219 | 2.3:-17126522 | MS.gene90149:CDS |
GCTTGCTCAAACGTTGGTGC+TGG | 0.461104 | 2.3:-17126588 | MS.gene90149:CDS |
GAAGGTTGAGGTTGAGGTTG+AGG | 0.461364 | 2.3:+17125596 | None:intergenic |
GAGAGGAGCTAGAAACCCTT+TGG | 0.463191 | 2.3:-17125669 | MS.gene90149:CDS |
AGGTTGTTGCTGTGCATAGG+AGG | 0.469491 | 2.3:-17125153 | MS.gene90149:CDS |
ACCTTGAGGCAAAGATCAAA+AGG | 0.476163 | 2.3:+17126411 | None:intergenic |
GTTAGAGAAGCAGAGGATAG+AGG | 0.478278 | 2.3:-17126820 | MS.gene90149:CDS |
GAAGCAGAGGATAGAGGCAT+TGG | 0.478285 | 2.3:-17126814 | MS.gene90149:CDS |
GGTAACTATGGATATGGATC+TGG | 0.489747 | 2.3:-17126510 | MS.gene90149:CDS |
GTTGGAGCTTGCTCAAACGT+TGG | 0.497141 | 2.3:-17126594 | MS.gene90149:CDS |
TCAGAAAACACGTTTGAATG+AGG | 0.499550 | 2.3:-17125705 | MS.gene90149:intron |
AGGAGGGGAAGTTCTTCATC+AGG | 0.500625 | 2.3:-17125136 | MS.gene90149:CDS |
TCATCAAGATTGTGATGAGT+TGG | 0.506524 | 2.3:+17125557 | None:intergenic |
AACAGGGTCGTTGTTGGTGG+TGG | 0.507033 | 2.3:-17126531 | MS.gene90149:CDS |
AATAACAACAGGGTCGTTGT+TGG | 0.507101 | 2.3:-17126537 | MS.gene90149:CDS |
TTTGAGCAAGCTCCAACAAA+AGG | 0.507919 | 2.3:+17126600 | None:intergenic |
GCTCAAACGTTGGTGCTGGA+TGG | 0.518767 | 2.3:-17126584 | MS.gene90149:CDS |
CTAGAAACCCTTTGGAGGCA+TGG | 0.527762 | 2.3:-17125661 | MS.gene90149:CDS |
GAGGAGAGTAATGTAATGAG+AGG | 0.529842 | 2.3:-17125686 | MS.gene90149:CDS |
TGATGTTGAGGAAACTGAAA+TGG | 0.535711 | 2.3:+17126699 | None:intergenic |
CTCACTGTTTCAGCTTATGG+TGG | 0.545279 | 2.3:-17124995 | MS.gene90149:CDS |
AACAACAGGGTCGTTGTTGG+TGG | 0.551873 | 2.3:-17126534 | MS.gene90149:CDS |
AAGTTCTTCATCAGGAGGGA+AGG | 0.555848 | 2.3:-17125128 | MS.gene90149:CDS |
TTGAACAGTTAGAGAAGCAG+AGG | 0.558284 | 2.3:-17126827 | MS.gene90149:CDS |
GATTAGGCCATGCCTCCAAA+GGG | 0.558465 | 2.3:+17125654 | None:intergenic |
GGATAAGCAGAAAGAACAGA+AGG | 0.566886 | 2.3:+17125578 | None:intergenic |
GCTCTTTAGAAGGCTCAAAA+GGG | 0.569253 | 2.3:+17126466 | None:intergenic |
TGATTAGGCCATGCCTCCAA+AGG | 0.575637 | 2.3:+17125653 | None:intergenic |
GGTTGTTGCTGTGCATAGGA+GGG | 0.577962 | 2.3:-17125152 | MS.gene90149:CDS |
ATTTGCTGTTGATGATGTTG+AGG | 0.585953 | 2.3:+17126687 | None:intergenic |
TTGGTGAGAAAAGCTGAAGC+TGG | 0.589265 | 2.3:-17126795 | MS.gene90149:CDS |
GTTGTTGATGAGGATGATCA+AGG | 0.590020 | 2.3:+17126760 | None:intergenic |
TTGTGTTGTAAAGTGTGTGG+AGG | 0.590206 | 2.3:-17125173 | MS.gene90149:intron |
GCAGAAAGAACAGAAGGTTG+AGG | 0.592292 | 2.3:+17125584 | None:intergenic |
AGGAGCTAGAAACCCTTTGG+AGG | 0.592534 | 2.3:-17125666 | MS.gene90149:CDS |
AAAAGCTGTTGTTGTTGATG+AGG | 0.593088 | 2.3:+17126750 | None:intergenic |
TGGAGGTTGTTGCTGTGCAT+AGG | 0.593913 | 2.3:-17125156 | MS.gene90149:CDS |
GTTGTTGCTGTGCATAGGAG+GGG | 0.608997 | 2.3:-17125151 | MS.gene90149:CDS |
GAAGCAGCTTCACCAATTGT+GGG | 0.613866 | 2.3:+17125031 | None:intergenic |
GGAAACTGAAATGGCCCAGT+TGG | 0.639292 | 2.3:+17126708 | None:intergenic |
AACTCATCACAATCTTGATG+AGG | 0.642648 | 2.3:-17125555 | MS.gene90149:intron |
AGGGGAAGTTCTTCATCAGG+AGG | 0.645014 | 2.3:-17125133 | MS.gene90149:CDS |
GGGGAAGTTCTTCATCAGGA+GGG | 0.656793 | 2.3:-17125132 | MS.gene90149:CDS |
TCAGAATCAGAATAACAACA+GGG | 0.760807 | 2.3:-17126547 | MS.gene90149:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAGATTAAATAATTAGATA+TGG | + | chr2.3:17126490-17126509 | None:intergenic | 10.0% |
!! | AAAAAAAAAAAATCCACAAA+AGG | + | chr2.3:17126003-17126022 | None:intergenic | 15.0% |
!! | ATAAAATATATTATACCTTG+AGG | + | chr2.3:17125461-17125480 | None:intergenic | 15.0% |
!! | ATTAAATTAAACATTGTATC+TGG | + | chr2.3:17126566-17126585 | None:intergenic | 15.0% |
!! | TTAACATTAATATCAACAAA+AGG | + | chr2.3:17125906-17125925 | None:intergenic | 15.0% |
!! | TTTCTGAATTAAAAAATTGA+TGG | - | chr2.3:17126642-17126661 | MS.gene90149:CDS | 15.0% |
!!! | GCAATGTTTAATTTTTTTTT+TGG | - | chr2.3:17126426-17126445 | MS.gene90149:CDS | 15.0% |
!!! | TGAATAATTTGATTTTTTCT+TGG | - | chr2.3:17125797-17125816 | MS.gene90149:intron | 15.0% |
!!! | TTTCAATTTTTCTAAGTTTA+GGG | - | chr2.3:17126609-17126628 | MS.gene90149:CDS | 15.0% |
!!! | TTTTCAATTTTTCTAAGTTT+AGG | - | chr2.3:17126608-17126627 | MS.gene90149:CDS | 15.0% |
!! | ACATAAATAACAAAAAGTAG+AGG | + | chr2.3:17125769-17125788 | None:intergenic | 20.0% |
!! | TTAACACTAATATCAACAAA+AGG | + | chr2.3:17126038-17126057 | None:intergenic | 20.0% |
!! | TTAGAAAAATTGAAAACACT+TGG | + | chr2.3:17126604-17126623 | None:intergenic | 20.0% |
!!! | GATTTTTTTCATGAAAAAGA+TGG | - | chr2.3:17126770-17126789 | MS.gene90149:CDS | 20.0% |
! | AAAAACAAAGGGAGAAAAAA+TGG | - | chr2.3:17124970-17124989 | MS.gene90149:CDS | 25.0% |
! | AAAACCAAGCAAAAAACAAA+GGG | - | chr2.3:17124959-17124978 | MS.gene90149:CDS | 25.0% |
! | ACATTGATATGATTAGATGA+TGG | - | chr2.3:17125547-17125566 | MS.gene90149:intron | 25.0% |
! | TTATTCTGATTCTGATTGTT+AGG | + | chr2.3:17125303-17125322 | None:intergenic | 25.0% |
!! | AGTGTTATTGTTATTGTTGT+TGG | + | chr2.3:17125211-17125230 | None:intergenic | 25.0% |
!! | CAATAACAATAACACTGTTT+TGG | - | chr2.3:17125215-17125234 | MS.gene90149:intron | 25.0% |
AAAAAATCCACAAAAGGTAG+AGG | + | chr2.3:17125997-17126016 | None:intergenic | 30.0% | |
ATCAGAATCAGAATAACAAC+AGG | - | chr2.3:17125307-17125326 | MS.gene90149:intron | 30.0% | |
GAAAACCAAGCAAAAAACAA+AGG | - | chr2.3:17124958-17124977 | MS.gene90149:CDS | 30.0% | |
TCAGAATCAGAATAACAACA+GGG | - | chr2.3:17125308-17125327 | MS.gene90149:intron | 30.0% | |
! | CATCATGTTCATGATTTTCT+TGG | - | chr2.3:17126226-17126245 | MS.gene90149:intron | 30.0% |
! | TCATGAACATGATGATGATT+AGG | + | chr2.3:17126220-17126239 | None:intergenic | 30.0% |
! | TTTTTGTGTTGTAAAGTGTG+TGG | - | chr2.3:17126679-17126698 | MS.gene90149:CDS | 30.0% |
!!! | AACAATAACACTGTTTTGGT+TGG | - | chr2.3:17125219-17125238 | MS.gene90149:intron | 30.0% |
AACCTGAAATTTCCCACAAT+TGG | - | chr2.3:17126812-17126831 | MS.gene90149:CDS | 35.0% | |
AACTCATCACAATCTTGATG+AGG | - | chr2.3:17126300-17126319 | MS.gene90149:intron | 35.0% | |
ATTGAAGAGAGCTCTTTAGA+AGG | + | chr2.3:17125402-17125421 | None:intergenic | 35.0% | |
TCAGAAAACACGTTTGAATG+AGG | - | chr2.3:17126150-17126169 | MS.gene90149:intron | 35.0% | |
TCATCAAGATTGTGATGAGT+TGG | + | chr2.3:17126301-17126320 | None:intergenic | 35.0% | |
TGATGTTGAGGAAACTGAAA+TGG | + | chr2.3:17125159-17125178 | None:intergenic | 35.0% | |
! | AAAAAACCACTAAGAGGTGT+AGG | - | chr2.3:17125003-17125022 | MS.gene90149:CDS | 35.0% |
! | AAAAGCTGTTGTTGTTGATG+AGG | + | chr2.3:17125108-17125127 | None:intergenic | 35.0% |
! | CATGTTCATGATTTTCTTGG+AGG | - | chr2.3:17126229-17126248 | MS.gene90149:intron | 35.0% |
! | TAATGTTCCTCTACCTTTTG+TGG | - | chr2.3:17125987-17126006 | MS.gene90149:intron | 35.0% |
! | TCTGGTTATGTTCCTTTTGT+TGG | - | chr2.3:17125243-17125262 | MS.gene90149:intron | 35.0% |
!! | ATTTGCTGTTGATGATGTTG+AGG | + | chr2.3:17125171-17125190 | None:intergenic | 35.0% |
!!! | ACACCTCTTAGTGGTTTTTT+TGG | + | chr2.3:17125003-17125022 | None:intergenic | 35.0% |
!!! | CAACAACAGCTTTTGAAGTA+TGG | - | chr2.3:17125114-17125133 | MS.gene90149:CDS | 35.0% |
!!! | GTTTTTTGCTTGGTTTTCAG+AGG | + | chr2.3:17124956-17124975 | None:intergenic | 35.0% |
!!! | TTCTCCCTTTGTTTTTTGCT+TGG | + | chr2.3:17124966-17124985 | None:intergenic | 35.0% |
AATAACAACAGGGTCGTTGT+TGG | - | chr2.3:17125318-17125337 | MS.gene90149:intron | 40.0% | |
ACCTTGAGGCAAAGATCAAA+AGG | + | chr2.3:17125447-17125466 | None:intergenic | 40.0% | |
CACCAATTGTGGGAAATTTC+AGG | + | chr2.3:17126817-17126836 | None:intergenic | 40.0% | |
GAGGAGAGTAATGTAATGAG+AGG | - | chr2.3:17126169-17126188 | MS.gene90149:intron | 40.0% | |
GCACCAAAAAAACCACTAAG+AGG | - | chr2.3:17124997-17125016 | MS.gene90149:CDS | 40.0% | |
GGATAAGCAGAAAGAACAGA+AGG | + | chr2.3:17126280-17126299 | None:intergenic | 40.0% | |
GGTAACTATGGATATGGATC+TGG | - | chr2.3:17125345-17125364 | MS.gene90149:intron | 40.0% | |
GGTTGAGAGTGATGAAGATT+TGG | + | chr2.3:17125426-17125445 | None:intergenic | 40.0% | |
TCTCTCACTGTTTCAGCTTA+TGG | - | chr2.3:17126857-17126876 | MS.gene90149:CDS | 40.0% | |
TTGAACAGTTAGAGAAGCAG+AGG | - | chr2.3:17125028-17125047 | MS.gene90149:CDS | 40.0% | |
TTGTGTTGTAAAGTGTGTGG+AGG | - | chr2.3:17126682-17126701 | MS.gene90149:CDS | 40.0% | |
TTTGAGCAAGCTCCAACAAA+AGG | + | chr2.3:17125258-17125277 | None:intergenic | 40.0% | |
! | ACCTTTTGATCTTTGCCTCA+AGG | - | chr2.3:17125443-17125462 | MS.gene90149:intron | 40.0% |
! | AGCTCTTTAGAAGGCTCAAA+AGG | + | chr2.3:17125393-17125412 | None:intergenic | 40.0% |
! | AGGGAAGGACAAAGTTTTCA+TGG | - | chr2.3:17126742-17126761 | MS.gene90149:CDS | 40.0% |
! | ATGGTGCATTTTCACCAACT+GGG | - | chr2.3:17125133-17125152 | MS.gene90149:CDS | 40.0% |
! | GCTCTTTAGAAGGCTCAAAA+GGG | + | chr2.3:17125392-17125411 | None:intergenic | 40.0% |
! | GTTGTTGATGAGGATGATCA+AGG | + | chr2.3:17125098-17125117 | None:intergenic | 40.0% |
! | TATGGTGCATTTTCACCAAC+TGG | - | chr2.3:17125132-17125151 | MS.gene90149:CDS | 40.0% |
!! | TGTGGGAAATTTCAGGTTCT+TGG | + | chr2.3:17126810-17126829 | None:intergenic | 40.0% |
!!! | AACACTGTTTTGGTTGGTTC+TGG | - | chr2.3:17125225-17125244 | MS.gene90149:intron | 40.0% |
AAGTTCTTCATCAGGAGGGA+AGG | - | chr2.3:17126727-17126746 | MS.gene90149:CDS | 45.0% | |
AGAACAGAAGGTTGAGGTTG+AGG | + | chr2.3:17126268-17126287 | None:intergenic | 45.0% | |
AGAAGCAGCTTCACCAATTG+TGG | + | chr2.3:17126828-17126847 | None:intergenic | 45.0% | |
CTCACTGTTTCAGCTTATGG+TGG | - | chr2.3:17126860-17126879 | MS.gene90149:CDS | 45.0% | |
GAAGCAGCTTCACCAATTGT+GGG | + | chr2.3:17126827-17126846 | None:intergenic | 45.0% | |
GCAGAAAGAACAGAAGGTTG+AGG | + | chr2.3:17126274-17126293 | None:intergenic | 45.0% | |
GTTAGAGAAGCAGAGGATAG+AGG | - | chr2.3:17125035-17125054 | MS.gene90149:CDS | 45.0% | |
TCAACTCCTACACCTCTTAG+TGG | + | chr2.3:17125012-17125031 | None:intergenic | 45.0% | |
TTGGTGAGAAAAGCTGAAGC+TGG | - | chr2.3:17125060-17125079 | MS.gene90149:CDS | 45.0% | |
! | GGTGGTGGTAACTATGGATA+TGG | - | chr2.3:17125339-17125358 | MS.gene90149:intron | 45.0% |
!! | GTTGTTGGTGGTGGTAACTA+TGG | - | chr2.3:17125333-17125352 | MS.gene90149:intron | 45.0% |
AACAACAGGGTCGTTGTTGG+TGG | - | chr2.3:17125321-17125340 | MS.gene90149:intron | 50.0% | |
AGGAGCTAGAAACCCTTTGG+AGG | - | chr2.3:17126189-17126208 | MS.gene90149:intron | 50.0% | |
AGGAGGGGAAGTTCTTCATC+AGG | - | chr2.3:17126719-17126738 | MS.gene90149:CDS | 50.0% | |
AGGGGAAGTTCTTCATCAGG+AGG | - | chr2.3:17126722-17126741 | MS.gene90149:CDS | 50.0% | |
AGGTTGTTGCTGTGCATAGG+AGG | - | chr2.3:17126702-17126721 | MS.gene90149:CDS | 50.0% | |
GAAGGTTGAGGTTGAGGTTG+AGG | + | chr2.3:17126262-17126281 | None:intergenic | 50.0% | |
GAGAGGAGCTAGAAACCCTT+TGG | - | chr2.3:17126186-17126205 | MS.gene90149:intron | 50.0% | |
GATTAGGCCATGCCTCCAAA+GGG | + | chr2.3:17126204-17126223 | None:intergenic | 50.0% | |
GGAAACTGAAATGGCCCAGT+TGG | + | chr2.3:17125150-17125169 | None:intergenic | 50.0% | |
GGGGAAGTTCTTCATCAGGA+GGG | - | chr2.3:17126723-17126742 | MS.gene90149:CDS | 50.0% | |
GGTTGTTGCTGTGCATAGGA+GGG | - | chr2.3:17126703-17126722 | MS.gene90149:CDS | 50.0% | |
GTTGTTGCTGTGCATAGGAG+GGG | - | chr2.3:17126704-17126723 | MS.gene90149:CDS | 50.0% | |
TGATTAGGCCATGCCTCCAA+AGG | + | chr2.3:17126205-17126224 | None:intergenic | 50.0% | |
TGGAGGTTGTTGCTGTGCAT+AGG | - | chr2.3:17126699-17126718 | MS.gene90149:CDS | 50.0% | |
! | CTAGAAACCCTTTGGAGGCA+TGG | - | chr2.3:17126194-17126213 | MS.gene90149:intron | 50.0% |
! | GAAGCAGAGGATAGAGGCAT+TGG | - | chr2.3:17125041-17125060 | MS.gene90149:CDS | 50.0% |
! | GTTGGAGCTTGCTCAAACGT+TGG | - | chr2.3:17125261-17125280 | MS.gene90149:intron | 50.0% |
!! | TGCTTGGTTTTCAGAGGCAG+AGG | + | chr2.3:17124950-17124969 | None:intergenic | 50.0% |
GCTTGCTCAAACGTTGGTGC+TGG | - | chr2.3:17125267-17125286 | MS.gene90149:intron | 55.0% | |
! | AACAGGGTCGTTGTTGGTGG+TGG | - | chr2.3:17125324-17125343 | MS.gene90149:intron | 55.0% |
!! | GCTCAAACGTTGGTGCTGGA+TGG | - | chr2.3:17125271-17125290 | MS.gene90149:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 17124943 | 17126934 | 17124943 | ID=MS.gene90149 |
chr2.3 | mRNA | 17124943 | 17126934 | 17124943 | ID=MS.gene90149.t1;Parent=MS.gene90149 |
chr2.3 | exon | 17126413 | 17126934 | 17126413 | ID=MS.gene90149.t1.exon1;Parent=MS.gene90149.t1 |
chr2.3 | CDS | 17126413 | 17126934 | 17126413 | ID=cds.MS.gene90149.t1;Parent=MS.gene90149.t1 |
chr2.3 | exon | 17125556 | 17125723 | 17125556 | ID=MS.gene90149.t1.exon2;Parent=MS.gene90149.t1 |
chr2.3 | CDS | 17125556 | 17125723 | 17125556 | ID=cds.MS.gene90149.t1;Parent=MS.gene90149.t1 |
chr2.3 | exon | 17124943 | 17125182 | 17124943 | ID=MS.gene90149.t1.exon3;Parent=MS.gene90149.t1 |
chr2.3 | CDS | 17124943 | 17125182 | 17124943 | ID=cds.MS.gene90149.t1;Parent=MS.gene90149.t1 |
Gene Sequence |
Protein sequence |