AlfalfaGEDB | MS.gene90229

M. sativa cultivar XinJiangDaYe / MS.gene90229

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0008150 GO:0008270 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043167 GO:0043169 GO:0043565 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00320.30 PF06200.17 PF06203.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90229.t1	XP_003608402.1	94	334	19	1	1	333	1	334	6.30E-173	616.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90229.t1	Q8H1G0	59.0	188	69	3	40	220	80	266	3.3e-45	183.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90229.t1	G7JV51	94.0	334	19	1	1	333	1	334	4.6e-173	616.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene90229.t1	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90229.t1	MTR_4g093730	94.012	334	19	1	1	333	1	334	0.0	651
MS.gene90229.t1	MTR_3g100040	46.512	301	132	8	40	318	66	359	1.96e-75	236
MS.gene90229.t1	MTR_3g100040	43.893	262	118	8	79	318	1	255	9.96e-58	187
MS.gene90229.t1	MTR_3g100050	43.333	270	127	7	5	268	33	282	7.54e-57	187
MS.gene90229.t1	MTR_5g066510	54.595	185	67	7	41	219	72	245	3.14e-56	184
MS.gene90229.t1	MTR_5g066510	51.538	130	49	5	41	164	72	193	3.36e-30	114
MS.gene90229.t1	MTR_3g060200	49.038	104	40	6	140	235	11	109	4.04e-19	87.0
MS.gene90229.t1	MTR_3g060200	49.038	104	40	6	140	235	11	109	1.13e-18	86.7
MS.gene90229.t1	MTR_3g060200	49.038	104	40	6	140	235	11	109	2.08e-18	86.3
MS.gene90229.t1	MTR_3g060200	49.038	104	40	6	140	235	11	109	2.46e-18	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90229.t1	AT1G51600	59.043	188	69	3	40	220	80	266	1.51e-61	199
MS.gene90229.t1	AT1G51600	59.043	188	69	3	40	220	80	266	1.51e-61	199
MS.gene90229.t1	AT3G21175	55.440	193	70	5	38	220	74	260	3.29e-60	195
MS.gene90229.t1	AT3G21175	54.922	193	73	4	38	220	74	262	4.18e-60	195
MS.gene90229.t1	AT4G24470	47.442	215	96	6	19	230	63	263	4.60e-51	172
MS.gene90229.t1	AT4G24470	47.442	215	96	6	19	230	63	263	4.60e-51	172
MS.gene90229.t1	AT4G24470	47.442	215	96	6	19	230	63	263	6.13e-51	172
MS.gene90229.t1	AT3G21175	57.018	114	46	2	38	151	74	184	4.97e-33	122

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Find 82 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTTGAATTACGGAAA+GGG	0.538823	4.2:-19938536	None:intergenic
AACATAAACCTCGCCTTCAA+AGG	0.517160	4.2:-19937937	None:intergenic
AACCTCGCCTTCAAAGGAAA+TGG	0.478631	4.2:-19937931	None:intergenic
AAGGGAACACTGAGAGATCT+CGG	0.561679	4.2:+19939765	MS.gene90229:intron
AATAGGATGCAACGGAAGAA+TGG	0.473196	4.2:+19939155	MS.gene90229:intron
AATTGGTGCAAAGTCTACTC+CGG	0.650622	4.2:+19939403	MS.gene90229:CDS
ACAGAAGCGGTAATGGGTTG+AGG	0.500608	4.2:-19937882	None:intergenic
ACCTCTCAGCAAGCTCTTTA+CGG	0.268811	4.2:-19938638	None:intergenic
ACCTGAGATGATAATTGAGC+AGG	0.486485	4.2:+19940502	MS.gene90229:CDS
ACCTGATCATCAAAACCTAA+AGG	0.529543	4.2:-19941368	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTTCAATTGAACGATG+GGG	-	chr4.2:19938017-19938036	None:intergenic	30.0%
AACTATCATCATTATCCACA+TGG	-	chr4.2:19940911-19940930	None:intergenic	30.0%
AAGTTGAATAAAGCCTATCT+TGG	+	chr4.2:19938966-19938985	MS.gene90229:intron	30.0%
ACCAATGTCACAAGAAAATA+AGG	-	chr4.2:19940390-19940409	None:intergenic	30.0%
ACTATCATCATTATCCACAT+GGG	-	chr4.2:19940910-19940929	None:intergenic	30.0%
ATTCATCTAATAGGATGCAA+CGG	+	chr4.2:19939147-19939166	MS.gene90229:intron	30.0%
CAATGTCACAAGAAAATAAG+GGG	-	chr4.2:19940388-19940407	None:intergenic	30.0%
CCAATGTCACAAGAAAATAA+GGG	-	chr4.2:19940389-19940408	None:intergenic	30.0%
CTGTATTGTTACTCTTAGAT+GGG	+	chr4.2:19938338-19938357	MS.gene90229:CDS	30.0%
GCACCAATATTAAGACTAAA+AGG	-	chr4.2:19939318-19939337	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	19937798	19941517	19937798	ID=MS.gene90229
chr4.2	mRNA	19937798	19941517	19937798	ID=MS.gene90229.t1;Parent=MS.gene90229
chr4.2	exon	19937798	19937983	19937798	ID=MS.gene90229.t1.exon1;Parent=MS.gene90229.t1
chr4.2	CDS	19937798	19937983	19937798	ID=cds.MS.gene90229.t1;Parent=MS.gene90229.t1
chr4.2	exon	19938331	19938426	19938331	ID=MS.gene90229.t1.exon2;Parent=MS.gene90229.t1
chr4.2	CDS	19938331	19938426	19938331	ID=cds.MS.gene90229.t1;Parent=MS.gene90229.t1
chr4.2	exon	19938525	19938658	19938525	ID=MS.gene90229.t1.exon3;Parent=MS.gene90229.t1
chr4.2	CDS	19938525	19938658	19938525	ID=cds.MS.gene90229.t1;Parent=MS.gene90229.t1
chr4.2	exon	19939160	19939261	19939160	ID=MS.gene90229.t1.exon4;Parent=MS.gene90229.t1
chr4.2	CDS	19939160	19939261	19939160	ID=cds.MS.gene90229.t1;Parent=MS.gene90229.t1
chr4.2	exon	19939379	19939493	19939379	ID=MS.gene90229.t1.exon5;Parent=MS.gene90229.t1
chr4.2	CDS	19939379	19939493	19939379	ID=cds.MS.gene90229.t1;Parent=MS.gene90229.t1
chr4.2	exon	19939768	19939824	19939768	ID=MS.gene90229.t1.exon6;Parent=MS.gene90229.t1
chr4.2	CDS	19939768	19939824	19939768	ID=cds.MS.gene90229.t1;Parent=MS.gene90229.t1
chr4.2	exon	19940265	19940312	19940265	ID=MS.gene90229.t1.exon7;Parent=MS.gene90229.t1
chr4.2	CDS	19940265	19940312	19940265	ID=cds.MS.gene90229.t1;Parent=MS.gene90229.t1
chr4.2	exon	19940455	19940523	19940455	ID=MS.gene90229.t1.exon8;Parent=MS.gene90229.t1
chr4.2	CDS	19940455	19940523	19940455	ID=cds.MS.gene90229.t1;Parent=MS.gene90229.t1
chr4.2	exon	19941081	19941161	19941081	ID=MS.gene90229.t1.exon9;Parent=MS.gene90229.t1
chr4.2	CDS	19941081	19941161	19941081	ID=cds.MS.gene90229.t1;Parent=MS.gene90229.t1
chr4.2	exon	19941317	19941388	19941317	ID=MS.gene90229.t1.exon10;Parent=MS.gene90229.t1
chr4.2	CDS	19941317	19941388	19941317	ID=cds.MS.gene90229.t1;Parent=MS.gene90229.t1
chr4.2	exon	19941476	19941517	19941476	ID=MS.gene90229.t1.exon11;Parent=MS.gene90229.t1
chr4.2	CDS	19941476	19941517	19941476	ID=cds.MS.gene90229.t1;Parent=MS.gene90229.t1

Gene Sequence

>MS.gene90229

ATGGAAATGCTGAATTCGTCTGAGAATGGGTCAATGGCCATGCACTGTACCAATGTAGCTTCCGTTTCTGACGAAGGTGAAAAACCTCAACCCATTACCGCTTCTGTTCCACTCTCTCGTGCTAGTGAACTCACCATTTCCTTTGAAGGCGAGGTTTATGTTTTCCCTTCCGTTACGCCAGAAAAGGTTCAATTTTTTTACAGTTTTTATTTCTTCCCCCATCGTTCAATTGAAGTTTTTTGTGTTATTAACTAAAATGCTTGAATTTGAAGTATTTTGAAAATTTTGAACTTTTTGTGCTCATAATGCACTCTATGCAATAAAGTTTAAGGTTGGATTAAGTTTCAGATAGTGGGTTTTCTACAATGTGGTGATTAGTCAGTAACATTTATTATTCAAGAAAATGAGAGTGTTGATAACACTCTTTTATGTATTTTGATCATGTTTATTATTTGGATTTTGGAGTATATTTGACCATTCTTGTGATTTTTAAAGGAAAAGACCTTTGATCACCCCTTTGTAATGAAATGCAGGTGCAGGCTGTATTGTTACTCTTAGATGGGCAGGAGACACTCAATAGCGTACCCACTTCTGACTTTTCGGTGCAGCAAAACTGTCGGGACATTTGGGTATTTTATTTCAAAATAACTCTTCATTCGGACATGTATTGGTATTAATTGCTTCTTAGCATGTTATTAATTTTTTTAAAATTTATGATGTTTACCAGGGGAAAAATGACCCTTTCCGTAATTCAAAGCTTTCACGGAGATCTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATCCGGTACACTTGCCGTAAAGAGCTTGCTGAGAGGTAGAGTCTAGGGTTGTTATGATCTTTGGTGCAGTTTGGCATATAATGTTTTCCTATTGATATTGTTGTTTCACATTTTCTTCTTTTATATTATAAATTGGTCTGGCAATTACAAACATTTGATTATTTGAAACCCGAAAAAATTGTAGATTTGTCCTTTTTTTTTCTTTTTCCTTTTAAATTATTTGGCTTAAACAAAACTTATGAGCTAATTTAAGATTGGGCAAGTAGTTGGTTCACCTTTGTGCCACGTCTTCACGTGAAAGCTTGCCTCCCCCTGCCTCCCTCTTTAAATATGCTTCCATTTAAGTTGAATAAAGCCTATCTTGGTTATTTGTAATATTACGTTTCTAAATGTTTGTCGTATGTGTATTTGCACGACATTAGAATATGCTGGCTTTTCTGAATAAGAGTCAGACTTTTACTTTAGACACTAACATGTTCTGCGGATCTTCTCGACTTTGGTGCTTTTGAGATTGATGAAATTAATTCATCTAATAGGATGCAACGGAAGAATGGACAGTTTGCATCATTGAAGGAAGAATGCAGTTCTCCTGCTGAAAACCAGGATTCTAGCAACAGTACTCCTTTCCCAGAATCCATGTGAGTTTCAAAGTTATATCATTAGTTTGAAAGTTAAAATGGAATAATATTTACCTTTTAGTCTTAATATTGGTGCTAATACGGCTACTGTTCTGTTGCTTTCCTGCCATTCTTAAGTGAACGTAGATGCCAGCATTGTGGAATTGGTGCAAAGTCTACTCCGGTAATGCGTCGAGGACCGGCTGGTCCAAGAACTCTATGCAATGCTTGCGGGCTCATGTGGGCAAATAAGGTAATTAATATCTTTATGTTAGCTTAGCATAGGATTATATTTTTGTAACGTAATTGTTGCAAGTTCTGCACTCCAGAACTAGGTGTTAAATCATGCCTCATTTTTGTATGATTTCTTTTATATTTACCAACTAGAACCCATGGCTTAAACAGGAGCTTTTGTCCTCTGTAATATCATCAAATTTCGTATTCCCATCTTGCCTGAAGTGACTTGGGAAATCTTATTTATTGTATCCAATTACTGACCTACGTTCGCATGGTCTGTTGATATGAAGGGAACACTGAGAGATCTCGGCAAAGCAGGAAGGATTGCTTTTGAACAGAATGAACTGGTATTTTTTTCATTTTGCATATTTTCACTGGACAATGTCTTCTCCTGTTATAAAGTAACCAAGAATATAATATGTTATTGATTCCGCATTCGGCATTACACTTTAAGAATAAAAGAACTAACAAACTCTAGAGACCCAGTTCCGTTTTCATGTAACCTGGATGTTGGATCTTCTCAAGTTGTCACATCACATGGCATTATGATGCAACACTAGAGAATTTTGGCGTAGGATCATAAATGATTTCATTTATGATAAATACTAAGAAGCAGATTGTGTCTATTTGCTACCTTTTTGTTTGGATTACTTGCCCTCAAAATCCAATGCAAATTAGAGTGTAATCCGTTAGTGGTCACCAGTTTGAGGTTTCTTTCTTGACATGACCTGTTCTCAACCAAAGATGCTTCAAATTTCATGTCTAATAGTATTATTTTTATTTTTAGGATTTTTCAACAGATCCAGAAAATTCATGTGCTGCACAGGACAAGAAGGTATCTTTTGATTTTATCTGCCGCAAATTAATGACACTTTTGTTGATTCGAAAAATGCAGCTGTTTCTTTTACCCCTTATTTTCTTGTGACATTGGTTGTGTCCCTTTATCTTTTATCAGTCTTATGTGTTTTTATCCTCAGGAAAGCCCCCATGAAACAAAGCCTTTGCCAATGGATGCCAGACAGTCACCTGAGATGATAATTGAGCAGGTTTTATATATTTATTTGTTTGTATTCGTGGAATCATTATCTTTTCTGTTTAAGTTAAAGAAACTAAAATTAGCCTCAGGCTATCATGAGGAAATTTGACTTATCTGCTCACATGGGATAATGCAATTCAATTCATTGAATAGATAGATAGATCATTAAGATACGCAAAAATTAACAACGTGATTAACTTTTGTAGAACTCAAACCATGTAGTAATTACATTTTCTATGGTCTCTAAAAACCCTGTCATATCAAACTTAATTATTTGTAAGAATTAAGTAAATGAAGCGGATATTCCCTCCAGCAAATTGAGACCAATTCATGTTATTGAGAATGCAAGTTTTTGGATTAGTGTATTTCATGCTCTCGATTAGTGTCTTTAGCCCCATGTGGATAATGATGATAGTTTTGTCAAGTTTTTGGCGTGCATACTTTTTTAATTTGGAACTCAATCTGTTTGTTCTGTTTAAAAATATACCTAAATTTTTTTATCCGAACATAATGTCATTTTATTGAACATTTTGGATGAACATTTTGGATCTTCGGTTATGATTACAGTATATGCTCGAAGCTGCTGAAGCAGTTACTGATAACTTGTCCATCCAAGTGGAGAATAATGCTCTTGATCTGCACGAGCAGGTGATTTTCTTTTACTTTTGTGACTACCTACTCTTCAAATGAGGTATCCTTCTGAGAGGGGAAAGTCATGAAAAGGGTTGAGGCGATAGCTGAAAACAGTTCGAGTATTAGGGCATTATTTGAGATCTGGTATGTTACACTTTTGAGGATTACAGGATAATATTATGGAGGATTTTGCTGATGCATCTGGGACTGAATTTGAGATTCCTTTAGGTTTTGATGATCAGGTATCCATCTAATCTTGCTAATGCTAGCCTTTATCTATCATTTACTTTGTTAAAGTTTTTATGAGATGAGTTCTGACATACATACAGGTCGATATTGATGATTCCAATATGAGGACTTACTGGCTGTGA

Protein sequence

>MS.gene90229.t1

MEMLNSSENGSMAMHCTNVASVSDEGEKPQPITASVPLSRASELTISFEGEVYVFPSVTPEKVQAVLLLLDGQETLNSVPTSDFSVQQNCRDIWGKNDPFRNSKLSRRSASLVRFREKRKERCFEKKIRYTCRKELAERMQRKNGQFASLKEECSSPAENQDSSNSTPFPESIERRCQHCGIGAKSTPVMRRGPAGPRTLCNACGLMWANKGTLRDLGKAGRIAFEQNELDFSTDPENSCAAQDKKESPHETKPLPMDARQSPEMIIEQYMLEAAEAVTDNLSIQVENNALDLHEQDNIMEDFADASGTEFEIPLGFDDQVDIDDSNMRTYWL