Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90254.t1 | XP_024637616.1 | 90.4 | 166 | 3 | 1 | 1 | 166 | 1 | 153 | 4.40E-70 | 274.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90254.t1 | Q6VAM4 | 61.2 | 165 | 51 | 1 | 1 | 165 | 1 | 152 | 1.9e-45 | 184.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90254.t1 | A0A396ICW3 | 90.4 | 166 | 3 | 1 | 1 | 166 | 1 | 153 | 3.2e-70 | 274.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene90254.t1 | TF | MADS-MIKC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90254.t1 | MTR_2g009890 | 62.051 | 195 | 61 | 1 | 1 | 195 | 1 | 182 | 1.46e-75 | 231 |
| MS.gene90254.t1 | MTR_5g031000 | 58.462 | 195 | 67 | 2 | 1 | 195 | 1 | 181 | 1.04e-69 | 214 |
| MS.gene90254.t1 | MTR_5g031000 | 60.109 | 183 | 59 | 2 | 1 | 183 | 1 | 169 | 7.39e-67 | 206 |
| MS.gene90254.t1 | MTR_4g092990 | 80.833 | 120 | 13 | 1 | 101 | 220 | 5 | 114 | 1.66e-58 | 182 |
| MS.gene90254.t1 | MTR_4g093030 | 75.630 | 119 | 18 | 2 | 1 | 112 | 1 | 115 | 7.17e-54 | 171 |
| MS.gene90254.t1 | MTR_3g005530 | 38.528 | 231 | 117 | 4 | 1 | 226 | 1 | 211 | 5.70e-41 | 140 |
| MS.gene90254.t1 | MTR_8g087860 | 42.308 | 182 | 91 | 2 | 3 | 183 | 19 | 187 | 2.78e-38 | 134 |
| MS.gene90254.t1 | MTR_2g017865 | 42.857 | 182 | 90 | 2 | 3 | 183 | 18 | 186 | 4.14e-37 | 131 |
| MS.gene90254.t1 | MTR_7g075870 | 44.706 | 170 | 78 | 3 | 1 | 168 | 1 | 156 | 1.96e-36 | 128 |
| MS.gene90254.t1 | MTR_7g075870 | 44.706 | 170 | 79 | 3 | 1 | 168 | 1 | 157 | 3.40e-36 | 127 |
| MS.gene90254.t1 | MTR_5g066990 | 54.545 | 121 | 55 | 0 | 75 | 195 | 6 | 126 | 3.70e-36 | 126 |
| MS.gene90254.t1 | MTR_4g109830 | 43.023 | 172 | 79 | 4 | 1 | 168 | 1 | 157 | 1.36e-35 | 127 |
| MS.gene90254.t1 | MTR_5g032520 | 41.848 | 184 | 93 | 2 | 1 | 183 | 1 | 171 | 2.24e-35 | 126 |
| MS.gene90254.t1 | MTR_7g016600 | 37.374 | 198 | 112 | 1 | 1 | 198 | 1 | 186 | 6.11e-35 | 125 |
| MS.gene90254.t1 | MTR_3g452380 | 40.000 | 185 | 95 | 4 | 1 | 183 | 16 | 186 | 7.76e-35 | 125 |
| MS.gene90254.t1 | MTR_4g109810 | 36.957 | 184 | 103 | 2 | 1 | 184 | 1 | 171 | 1.11e-34 | 124 |
| MS.gene90254.t1 | MTR_7g016630 | 41.209 | 182 | 92 | 3 | 1 | 181 | 1 | 168 | 1.16e-34 | 125 |
| MS.gene90254.t1 | MTR_5g032150 | 40.761 | 184 | 95 | 2 | 1 | 183 | 1 | 171 | 1.61e-34 | 124 |
| MS.gene90254.t1 | MTR_5g066990 | 54.701 | 117 | 53 | 0 | 75 | 191 | 6 | 122 | 4.39e-34 | 120 |
| MS.gene90254.t1 | MTR_8g033270 | 39.791 | 191 | 95 | 3 | 1 | 187 | 1 | 175 | 8.89e-34 | 122 |
| MS.gene90254.t1 | MTR_4g102530 | 40.404 | 198 | 91 | 4 | 1 | 191 | 1 | 178 | 1.76e-33 | 120 |
| MS.gene90254.t1 | MTR_5g046790 | 39.674 | 184 | 98 | 2 | 1 | 183 | 1 | 172 | 3.03e-33 | 120 |
| MS.gene90254.t1 | MTR_5g066180 | 39.037 | 187 | 98 | 3 | 1 | 186 | 1 | 172 | 4.57e-33 | 120 |
| MS.gene90254.t1 | MTR_7g075850 | 39.572 | 187 | 102 | 1 | 1 | 187 | 1 | 176 | 8.34e-33 | 120 |
| MS.gene90254.t1 | MTR_6g015975 | 37.000 | 200 | 112 | 2 | 1 | 198 | 1 | 188 | 8.98e-33 | 120 |
| MS.gene90254.t1 | MTR_8g066260 | 39.548 | 177 | 94 | 2 | 1 | 176 | 1 | 165 | 3.33e-32 | 118 |
| MS.gene90254.t1 | MTR_8g097090 | 40.541 | 185 | 94 | 3 | 1 | 182 | 1 | 172 | 4.37e-32 | 118 |
| MS.gene90254.t1 | MTR_1g053070 | 36.493 | 211 | 103 | 6 | 1 | 199 | 1 | 192 | 2.55e-31 | 116 |
| MS.gene90254.t1 | MTR_8g033220 | 39.572 | 187 | 92 | 3 | 1 | 182 | 1 | 171 | 3.69e-31 | 115 |
| MS.gene90254.t1 | MTR_8g033220 | 39.572 | 187 | 92 | 3 | 1 | 182 | 1 | 171 | 5.63e-31 | 114 |
| MS.gene90254.t1 | MTR_3g084980 | 37.321 | 209 | 114 | 4 | 1 | 205 | 1 | 196 | 1.65e-30 | 114 |
| MS.gene90254.t1 | MTR_4g093970 | 42.188 | 192 | 92 | 4 | 1 | 187 | 27 | 204 | 2.80e-30 | 113 |
| MS.gene90254.t1 | MTR_1g038300 | 36.946 | 203 | 93 | 5 | 1 | 196 | 1 | 175 | 1.81e-29 | 110 |
| MS.gene90254.t1 | MTR_4g036050 | 39.665 | 179 | 87 | 4 | 1 | 173 | 1 | 164 | 4.16e-28 | 106 |
| MS.gene90254.t1 | MTR_4g036050 | 40.000 | 170 | 82 | 3 | 1 | 165 | 1 | 155 | 5.08e-28 | 105 |
| MS.gene90254.t1 | MTR_5g066960 | 77.049 | 61 | 14 | 0 | 1 | 61 | 1 | 61 | 8.62e-28 | 101 |
| MS.gene90254.t1 | MTR_4g036050 | 39.286 | 168 | 82 | 3 | 1 | 163 | 1 | 153 | 1.21e-27 | 104 |
| MS.gene90254.t1 | MTR_3g113030 | 32.016 | 253 | 126 | 7 | 1 | 234 | 1 | 226 | 1.40e-27 | 105 |
| MS.gene90254.t1 | MTR_0003s0590 | 40.838 | 191 | 89 | 5 | 1 | 184 | 1 | 174 | 1.41e-27 | 106 |
| MS.gene90254.t1 | MTR_4g036050 | 40.252 | 159 | 75 | 3 | 1 | 154 | 1 | 144 | 2.93e-27 | 103 |
| MS.gene90254.t1 | MTR_1g101970 | 35.176 | 199 | 94 | 5 | 1 | 194 | 1 | 169 | 3.06e-26 | 101 |
| MS.gene90254.t1 | MTR_6g464720 | 36.224 | 196 | 97 | 4 | 1 | 194 | 1 | 170 | 6.95e-26 | 102 |
| MS.gene90254.t1 | MTR_3g088615 | 35.829 | 187 | 85 | 8 | 1 | 179 | 1 | 160 | 6.87e-25 | 97.4 |
| MS.gene90254.t1 | MTR_5g021270 | 35.366 | 164 | 75 | 3 | 1 | 154 | 1 | 143 | 7.02e-22 | 90.9 |
| MS.gene90254.t1 | MTR_5g021270 | 35.366 | 164 | 75 | 3 | 1 | 154 | 1 | 143 | 7.79e-22 | 90.9 |
| MS.gene90254.t1 | MTR_5g046870 | 41.935 | 124 | 51 | 4 | 1 | 120 | 1 | 107 | 1.47e-21 | 87.0 |
| MS.gene90254.t1 | MTR_1g029670 | 35.220 | 159 | 78 | 5 | 1 | 154 | 1 | 139 | 1.36e-20 | 86.3 |
| MS.gene90254.t1 | MTR_2g461710 | 61.017 | 59 | 23 | 0 | 1 | 59 | 1 | 59 | 5.30e-20 | 81.3 |
| MS.gene90254.t1 | MTR_3g102570 | 35.882 | 170 | 92 | 3 | 1 | 154 | 1 | 169 | 8.44e-19 | 84.0 |
| MS.gene90254.t1 | MTR_1g041615 | 60.656 | 61 | 22 | 1 | 13 | 73 | 17 | 75 | 3.33e-17 | 75.9 |
| MS.gene90254.t1 | MTR_4g084740 | 31.492 | 181 | 97 | 4 | 1 | 154 | 1 | 181 | 3.83e-15 | 73.9 |
| MS.gene90254.t1 | MTR_8g051580 | 34.911 | 169 | 86 | 6 | 1 | 150 | 1 | 164 | 7.55e-15 | 70.9 |
| MS.gene90254.t1 | MTR_4g094638 | 34.351 | 131 | 58 | 3 | 1 | 131 | 1 | 103 | 4.55e-14 | 68.6 |
| MS.gene90254.t1 | MTR_1g054265 | 46.377 | 69 | 30 | 1 | 1 | 62 | 1 | 69 | 2.09e-13 | 66.6 |
| MS.gene90254.t1 | MTR_4g094632 | 48.387 | 62 | 32 | 0 | 1 | 62 | 1 | 62 | 2.37e-13 | 66.2 |
| MS.gene90254.t1 | MTR_1g063160 | 44.928 | 69 | 31 | 1 | 1 | 62 | 1 | 69 | 2.74e-13 | 66.6 |
| MS.gene90254.t1 | MTR_8g079502 | 51.724 | 58 | 28 | 0 | 1 | 58 | 1 | 58 | 4.57e-13 | 65.9 |
| MS.gene90254.t1 | MTR_1g047550 | 51.724 | 58 | 28 | 0 | 1 | 58 | 1 | 58 | 9.79e-13 | 65.1 |
| MS.gene90254.t1 | MTR_2g085280 | 34.188 | 117 | 63 | 3 | 3 | 119 | 10 | 112 | 1.19e-12 | 65.9 |
| MS.gene90254.t1 | MTR_2g085250 | 34.188 | 117 | 63 | 3 | 3 | 119 | 10 | 112 | 1.26e-12 | 65.9 |
| MS.gene90254.t1 | MTR_2g461760 | 41.071 | 112 | 61 | 3 | 75 | 183 | 1 | 110 | 1.87e-12 | 64.3 |
| MS.gene90254.t1 | MTR_2g461760 | 41.071 | 112 | 61 | 3 | 75 | 183 | 1 | 110 | 2.07e-12 | 63.9 |
| MS.gene90254.t1 | MTR_3g052920 | 42.500 | 80 | 33 | 1 | 3 | 82 | 10 | 76 | 3.15e-12 | 64.7 |
| MS.gene90254.t1 | MTR_2g105290 | 48.276 | 58 | 30 | 0 | 1 | 58 | 11 | 68 | 3.65e-12 | 63.5 |
| MS.gene90254.t1 | MTR_1g108510 | 33.333 | 132 | 66 | 5 | 3 | 129 | 10 | 124 | 3.70e-12 | 64.3 |
| MS.gene90254.t1 | MTR_7g028448 | 46.774 | 62 | 26 | 1 | 15 | 69 | 25 | 86 | 4.49e-12 | 63.2 |
| MS.gene90254.t1 | MTR_4g036915 | 46.774 | 62 | 26 | 1 | 15 | 69 | 25 | 86 | 4.49e-12 | 63.2 |
| MS.gene90254.t1 | MTR_4g131030 | 48.276 | 58 | 30 | 0 | 1 | 58 | 1 | 58 | 7.60e-12 | 63.2 |
| MS.gene90254.t1 | MTR_8g086290 | 50.000 | 56 | 28 | 0 | 3 | 58 | 13 | 68 | 7.74e-12 | 62.4 |
| MS.gene90254.t1 | MTR_5g045560 | 40.476 | 84 | 37 | 1 | 3 | 86 | 10 | 80 | 7.98e-12 | 63.5 |
| MS.gene90254.t1 | MTR_1g108580 | 32.836 | 134 | 68 | 5 | 3 | 131 | 10 | 126 | 1.13e-11 | 63.2 |
| MS.gene90254.t1 | MTR_2g093190 | 33.083 | 133 | 69 | 4 | 3 | 131 | 10 | 126 | 1.28e-11 | 62.8 |
| MS.gene90254.t1 | MTR_5g053390 | 51.786 | 56 | 27 | 0 | 3 | 58 | 10 | 65 | 1.32e-11 | 62.8 |
| MS.gene90254.t1 | MTR_4g108720 | 52.830 | 53 | 25 | 0 | 1 | 53 | 1 | 53 | 2.77e-11 | 63.2 |
| MS.gene90254.t1 | MTR_8g046350 | 48.276 | 58 | 30 | 0 | 1 | 58 | 1 | 58 | 3.94e-11 | 60.5 |
| MS.gene90254.t1 | MTR_8g043650 | 38.750 | 80 | 36 | 1 | 3 | 82 | 10 | 76 | 4.14e-11 | 61.6 |
| MS.gene90254.t1 | MTR_5g041650 | 52.830 | 53 | 25 | 0 | 1 | 53 | 38 | 90 | 4.26e-11 | 62.4 |
| MS.gene90254.t1 | MTR_5g055100 | 40.000 | 80 | 35 | 2 | 3 | 82 | 10 | 76 | 5.08e-11 | 61.2 |
| MS.gene90254.t1 | MTR_1g105920 | 38.750 | 80 | 36 | 1 | 3 | 82 | 10 | 76 | 5.82e-11 | 61.2 |
| MS.gene90254.t1 | MTR_1g077360 | 48.214 | 56 | 29 | 0 | 3 | 58 | 10 | 65 | 6.87e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90254.t1 | AT4G37940 | 52.273 | 220 | 88 | 2 | 1 | 216 | 1 | 207 | 5.45e-67 | 207 |
| MS.gene90254.t1 | AT2G14210 | 55.385 | 195 | 75 | 2 | 1 | 195 | 1 | 183 | 4.44e-62 | 194 |
| MS.gene90254.t1 | AT2G14210 | 55.385 | 195 | 75 | 2 | 1 | 195 | 1 | 183 | 5.00e-62 | 194 |
| MS.gene90254.t1 | AT3G57230 | 44.177 | 249 | 117 | 4 | 1 | 245 | 1 | 231 | 1.18e-61 | 194 |
| MS.gene90254.t1 | AT3G57230 | 44.177 | 249 | 117 | 4 | 1 | 245 | 1 | 231 | 1.18e-61 | 194 |
| MS.gene90254.t1 | AT4G37940 | 50.000 | 220 | 79 | 3 | 1 | 216 | 1 | 193 | 1.63e-61 | 192 |
| MS.gene90254.t1 | AT2G22630 | 52.792 | 197 | 80 | 1 | 1 | 197 | 1 | 184 | 4.65e-61 | 192 |
| MS.gene90254.t1 | AT2G22630 | 52.792 | 197 | 80 | 1 | 1 | 197 | 1 | 184 | 4.65e-61 | 192 |
| MS.gene90254.t1 | AT4G37940 | 59.748 | 159 | 51 | 1 | 1 | 159 | 1 | 146 | 8.73e-60 | 187 |
| MS.gene90254.t1 | AT3G57230 | 55.128 | 156 | 57 | 1 | 1 | 156 | 1 | 143 | 6.27e-54 | 171 |
| MS.gene90254.t1 | AT2G03710 | 41.935 | 186 | 91 | 4 | 1 | 183 | 1 | 172 | 2.68e-40 | 137 |
| MS.gene90254.t1 | AT4G09960 | 44.444 | 162 | 76 | 2 | 1 | 161 | 1 | 149 | 7.71e-40 | 137 |
| MS.gene90254.t1 | AT4G09960 | 41.624 | 197 | 94 | 3 | 1 | 196 | 2 | 178 | 1.98e-39 | 136 |
| MS.gene90254.t1 | AT4G09960 | 41.624 | 197 | 94 | 3 | 1 | 196 | 1 | 177 | 2.19e-39 | 136 |
| MS.gene90254.t1 | AT4G09960 | 41.624 | 197 | 94 | 3 | 1 | 196 | 11 | 187 | 3.12e-39 | 136 |
| MS.gene90254.t1 | AT4G18960 | 42.308 | 182 | 91 | 2 | 3 | 183 | 19 | 187 | 5.17e-39 | 136 |
| MS.gene90254.t1 | AT4G09960 | 41.624 | 197 | 94 | 3 | 1 | 196 | 27 | 203 | 7.16e-39 | 136 |
| MS.gene90254.t1 | AT2G03710 | 41.711 | 187 | 92 | 4 | 1 | 184 | 1 | 173 | 9.63e-39 | 135 |
| MS.gene90254.t1 | AT2G03710 | 41.711 | 187 | 92 | 4 | 1 | 184 | 1 | 173 | 1.01e-38 | 135 |
| MS.gene90254.t1 | AT2G45660 | 43.478 | 184 | 88 | 3 | 1 | 182 | 1 | 170 | 1.17e-38 | 134 |
| MS.gene90254.t1 | AT2G45660 | 44.118 | 170 | 79 | 3 | 1 | 168 | 1 | 156 | 9.52e-38 | 130 |
| MS.gene90254.t1 | AT5G62165 | 43.373 | 166 | 80 | 2 | 1 | 165 | 1 | 153 | 6.94e-37 | 127 |
| MS.gene90254.t1 | AT5G62165 | 43.373 | 166 | 80 | 2 | 1 | 165 | 1 | 153 | 6.94e-37 | 127 |
| MS.gene90254.t1 | AT5G62165 | 43.373 | 166 | 80 | 2 | 1 | 165 | 1 | 153 | 6.94e-37 | 127 |
| MS.gene90254.t1 | AT4G09960 | 45.806 | 155 | 70 | 2 | 1 | 154 | 96 | 237 | 8.13e-37 | 132 |
| MS.gene90254.t1 | AT2G22540 | 42.268 | 194 | 98 | 2 | 1 | 193 | 1 | 181 | 1.80e-36 | 129 |
| MS.gene90254.t1 | AT2G22540 | 42.268 | 194 | 98 | 2 | 1 | 193 | 1 | 181 | 1.80e-36 | 129 |
| MS.gene90254.t1 | AT5G62165 | 42.077 | 183 | 92 | 2 | 1 | 182 | 1 | 170 | 2.03e-36 | 128 |
| MS.gene90254.t1 | AT5G62165 | 42.077 | 183 | 92 | 2 | 1 | 182 | 1 | 170 | 2.03e-36 | 128 |
| MS.gene90254.t1 | AT5G62165 | 42.077 | 183 | 92 | 2 | 1 | 182 | 1 | 170 | 2.03e-36 | 128 |
| MS.gene90254.t1 | AT3G58780 | 39.459 | 185 | 92 | 3 | 3 | 183 | 18 | 186 | 3.03e-36 | 129 |
| MS.gene90254.t1 | AT3G58780 | 39.459 | 185 | 92 | 3 | 3 | 183 | 24 | 192 | 3.99e-36 | 129 |
| MS.gene90254.t1 | AT5G60910 | 40.761 | 184 | 96 | 2 | 1 | 183 | 1 | 172 | 4.30e-36 | 128 |
| MS.gene90254.t1 | AT2G42830 | 39.459 | 185 | 92 | 3 | 3 | 183 | 18 | 186 | 6.55e-36 | 128 |
| MS.gene90254.t1 | AT1G69120 | 39.130 | 184 | 99 | 2 | 1 | 183 | 1 | 172 | 1.11e-35 | 127 |
| MS.gene90254.t1 | AT1G26310 | 39.785 | 186 | 97 | 2 | 1 | 183 | 1 | 174 | 1.44e-35 | 127 |
| MS.gene90254.t1 | AT1G69120 | 39.130 | 184 | 99 | 2 | 1 | 183 | 1 | 172 | 2.14e-35 | 127 |
| MS.gene90254.t1 | AT5G62165 | 45.161 | 155 | 71 | 2 | 1 | 154 | 1 | 142 | 2.45e-35 | 124 |
| MS.gene90254.t1 | AT5G62165 | 45.161 | 155 | 71 | 2 | 1 | 154 | 1 | 142 | 2.45e-35 | 124 |
| MS.gene90254.t1 | AT5G62165 | 45.161 | 155 | 71 | 2 | 1 | 154 | 1 | 142 | 2.45e-35 | 124 |
| MS.gene90254.t1 | AT5G62165 | 45.161 | 155 | 71 | 2 | 1 | 154 | 1 | 142 | 2.45e-35 | 124 |
| MS.gene90254.t1 | AT5G62165 | 45.161 | 155 | 71 | 2 | 1 | 154 | 1 | 142 | 2.45e-35 | 124 |
| MS.gene90254.t1 | AT2G42830 | 40.000 | 170 | 82 | 3 | 3 | 168 | 18 | 171 | 2.69e-35 | 126 |
| MS.gene90254.t1 | AT4G24540 | 39.572 | 187 | 99 | 2 | 1 | 186 | 1 | 174 | 3.53e-35 | 125 |
| MS.gene90254.t1 | AT3G58780 | 41.139 | 158 | 73 | 3 | 1 | 154 | 16 | 157 | 3.94e-35 | 127 |
| MS.gene90254.t1 | AT5G62165 | 40.670 | 209 | 98 | 5 | 1 | 201 | 1 | 191 | 4.57e-35 | 124 |
| MS.gene90254.t1 | AT5G62165 | 40.670 | 209 | 98 | 5 | 1 | 201 | 1 | 191 | 4.57e-35 | 124 |
| MS.gene90254.t1 | AT5G51870 | 39.691 | 194 | 96 | 3 | 1 | 192 | 1 | 175 | 5.00e-35 | 125 |
| MS.gene90254.t1 | AT5G51870 | 39.691 | 194 | 96 | 3 | 1 | 192 | 11 | 185 | 6.40e-35 | 125 |
| MS.gene90254.t1 | AT3G58780 | 38.071 | 197 | 103 | 3 | 3 | 183 | 18 | 211 | 7.34e-35 | 126 |
| MS.gene90254.t1 | AT2G22540 | 41.753 | 194 | 94 | 2 | 1 | 193 | 1 | 176 | 8.85e-35 | 124 |
| MS.gene90254.t1 | AT3G58780 | 39.785 | 186 | 83 | 5 | 3 | 183 | 18 | 179 | 1.10e-34 | 124 |
| MS.gene90254.t1 | AT5G51870 | 41.176 | 170 | 85 | 2 | 1 | 168 | 1 | 157 | 1.12e-34 | 124 |
| MS.gene90254.t1 | AT2G45650 | 38.860 | 193 | 91 | 2 | 1 | 193 | 1 | 166 | 1.87e-34 | 124 |
| MS.gene90254.t1 | AT4G22950 | 39.247 | 186 | 94 | 3 | 1 | 183 | 1 | 170 | 2.26e-34 | 122 |
| MS.gene90254.t1 | AT4G11880 | 43.429 | 175 | 81 | 4 | 1 | 172 | 1 | 160 | 3.30e-34 | 121 |
| MS.gene90254.t1 | AT4G11880 | 43.429 | 175 | 81 | 4 | 1 | 172 | 1 | 160 | 3.30e-34 | 121 |
| MS.gene90254.t1 | AT4G22950 | 37.438 | 203 | 95 | 4 | 1 | 200 | 1 | 174 | 8.66e-34 | 122 |
| MS.gene90254.t1 | AT4G22950 | 37.438 | 203 | 95 | 4 | 1 | 200 | 1 | 174 | 8.66e-34 | 122 |
| MS.gene90254.t1 | AT4G11880 | 45.860 | 157 | 67 | 4 | 1 | 154 | 1 | 142 | 1.75e-33 | 121 |
| MS.gene90254.t1 | AT4G11880 | 45.860 | 157 | 67 | 4 | 1 | 154 | 1 | 142 | 1.75e-33 | 121 |
| MS.gene90254.t1 | AT5G51870 | 42.949 | 156 | 74 | 2 | 1 | 154 | 1 | 143 | 2.69e-33 | 119 |
| MS.gene90254.t1 | AT5G51870 | 42.949 | 156 | 74 | 2 | 1 | 154 | 24 | 166 | 5.33e-33 | 119 |
| MS.gene90254.t1 | AT5G51860 | 38.021 | 192 | 99 | 4 | 1 | 189 | 1 | 175 | 2.54e-32 | 117 |
| MS.gene90254.t1 | AT4G37940 | 45.205 | 146 | 76 | 1 | 75 | 216 | 1 | 146 | 3.17e-32 | 116 |
| MS.gene90254.t1 | AT5G51860 | 39.521 | 167 | 86 | 2 | 1 | 165 | 1 | 154 | 4.57e-32 | 117 |
| MS.gene90254.t1 | AT5G23260 | 38.496 | 226 | 96 | 9 | 1 | 216 | 1 | 193 | 9.95e-32 | 117 |
| MS.gene90254.t1 | AT5G23260 | 38.496 | 226 | 96 | 9 | 1 | 216 | 17 | 209 | 1.52e-31 | 117 |
| MS.gene90254.t1 | AT3G57390 | 38.462 | 195 | 99 | 3 | 1 | 187 | 1 | 182 | 2.39e-31 | 115 |
| MS.gene90254.t1 | AT5G15800 | 39.153 | 189 | 101 | 3 | 1 | 187 | 1 | 177 | 2.60e-31 | 116 |
| MS.gene90254.t1 | AT5G15800 | 39.153 | 189 | 101 | 3 | 1 | 187 | 1 | 177 | 3.88e-31 | 116 |
| MS.gene90254.t1 | AT3G57390 | 38.462 | 195 | 99 | 3 | 1 | 187 | 1 | 182 | 4.23e-31 | 115 |
| MS.gene90254.t1 | AT1G24260 | 38.095 | 189 | 96 | 3 | 1 | 183 | 1 | 174 | 6.25e-31 | 115 |
| MS.gene90254.t1 | AT1G24260 | 37.895 | 190 | 96 | 3 | 1 | 183 | 1 | 175 | 8.70e-31 | 115 |
| MS.gene90254.t1 | AT3G02310 | 39.153 | 189 | 101 | 3 | 1 | 187 | 1 | 177 | 2.96e-30 | 113 |
| MS.gene90254.t1 | AT3G02310 | 40.361 | 166 | 86 | 2 | 1 | 165 | 1 | 154 | 2.99e-30 | 112 |
| MS.gene90254.t1 | AT3G57230 | 35.437 | 206 | 115 | 5 | 43 | 245 | 7 | 197 | 3.13e-30 | 112 |
| MS.gene90254.t1 | AT3G57230 | 35.437 | 206 | 115 | 5 | 43 | 245 | 7 | 197 | 3.13e-30 | 112 |
| MS.gene90254.t1 | AT5G13790 | 39.785 | 186 | 90 | 4 | 1 | 183 | 1 | 167 | 3.15e-30 | 114 |
| MS.gene90254.t1 | AT5G23260 | 37.168 | 226 | 94 | 8 | 1 | 216 | 17 | 204 | 5.54e-30 | 113 |
| MS.gene90254.t1 | AT5G13790 | 39.891 | 183 | 91 | 3 | 1 | 183 | 1 | 164 | 7.01e-30 | 112 |
| MS.gene90254.t1 | AT1G24260 | 39.429 | 175 | 84 | 3 | 1 | 168 | 1 | 160 | 1.80e-29 | 111 |
| MS.gene90254.t1 | AT5G23260 | 40.698 | 172 | 79 | 5 | 1 | 167 | 1 | 154 | 2.21e-28 | 108 |
| MS.gene90254.t1 | AT3G30260 | 39.355 | 155 | 81 | 2 | 1 | 154 | 1 | 143 | 2.24e-28 | 108 |
| MS.gene90254.t1 | AT3G61120 | 38.095 | 168 | 90 | 2 | 1 | 168 | 1 | 154 | 3.05e-28 | 108 |
| MS.gene90254.t1 | AT3G54340 | 37.569 | 181 | 85 | 5 | 1 | 175 | 1 | 159 | 8.93e-26 | 101 |
| MS.gene90254.t1 | AT5G62165 | 55.056 | 89 | 27 | 1 | 1 | 89 | 1 | 76 | 9.50e-25 | 95.1 |
| MS.gene90254.t1 | AT5G20240 | 36.709 | 158 | 71 | 5 | 1 | 151 | 1 | 136 | 3.47e-23 | 92.4 |
| MS.gene90254.t1 | AT5G20240 | 37.179 | 156 | 73 | 5 | 1 | 151 | 1 | 136 | 1.96e-22 | 92.0 |
| MS.gene90254.t1 | AT5G65060 | 34.946 | 186 | 96 | 4 | 1 | 183 | 1 | 164 | 1.68e-21 | 89.0 |
| MS.gene90254.t1 | AT5G65060 | 34.946 | 186 | 96 | 4 | 1 | 183 | 1 | 164 | 1.92e-21 | 89.0 |
| MS.gene90254.t1 | AT5G65050 | 34.973 | 183 | 100 | 3 | 1 | 183 | 1 | 164 | 2.42e-21 | 88.2 |
| MS.gene90254.t1 | AT5G65050 | 34.973 | 183 | 100 | 3 | 1 | 183 | 1 | 164 | 4.21e-21 | 88.2 |
| MS.gene90254.t1 | AT5G10140 | 35.065 | 154 | 81 | 2 | 1 | 154 | 1 | 135 | 4.25e-21 | 87.8 |
| MS.gene90254.t1 | AT5G10140 | 35.065 | 154 | 81 | 2 | 1 | 154 | 1 | 135 | 4.78e-21 | 87.0 |
| MS.gene90254.t1 | AT5G10140 | 35.065 | 154 | 81 | 2 | 1 | 154 | 1 | 135 | 6.67e-21 | 87.4 |
| MS.gene90254.t1 | AT5G10140 | 35.065 | 154 | 81 | 2 | 1 | 154 | 1 | 135 | 8.90e-21 | 87.0 |
| MS.gene90254.t1 | AT1G31140 | 39.103 | 156 | 80 | 4 | 1 | 154 | 1 | 143 | 1.35e-20 | 87.0 |
| MS.gene90254.t1 | AT1G31140 | 38.608 | 158 | 80 | 4 | 1 | 154 | 1 | 145 | 1.09e-19 | 84.7 |
| MS.gene90254.t1 | AT5G65050 | 37.013 | 154 | 78 | 3 | 1 | 154 | 1 | 135 | 1.54e-19 | 83.6 |
| MS.gene90254.t1 | AT5G65050 | 33.880 | 183 | 91 | 3 | 1 | 183 | 1 | 153 | 1.87e-19 | 83.6 |
| MS.gene90254.t1 | AT5G65060 | 34.973 | 183 | 89 | 5 | 1 | 183 | 1 | 153 | 2.83e-19 | 82.8 |
| MS.gene90254.t1 | AT1G71692 | 34.359 | 195 | 102 | 3 | 1 | 184 | 1 | 180 | 4.29e-19 | 83.2 |
| MS.gene90254.t1 | AT5G65080 | 37.419 | 155 | 76 | 4 | 1 | 154 | 8 | 142 | 5.53e-19 | 82.4 |
| MS.gene90254.t1 | AT5G65070 | 36.129 | 155 | 78 | 4 | 1 | 154 | 1 | 135 | 8.43e-18 | 77.8 |
| MS.gene90254.t1 | AT5G65070 | 32.512 | 203 | 114 | 5 | 1 | 200 | 1 | 183 | 9.29e-18 | 79.3 |
| MS.gene90254.t1 | AT5G65070 | 30.942 | 223 | 123 | 6 | 1 | 200 | 1 | 215 | 5.73e-17 | 77.8 |
| MS.gene90254.t1 | AT5G65070 | 59.322 | 59 | 24 | 0 | 1 | 59 | 1 | 59 | 6.63e-17 | 77.4 |
| MS.gene90254.t1 | AT5G65070 | 59.322 | 59 | 24 | 0 | 1 | 59 | 1 | 59 | 7.28e-17 | 77.0 |
| MS.gene90254.t1 | AT1G77980 | 40.506 | 158 | 77 | 6 | 1 | 151 | 1 | 148 | 2.11e-16 | 77.8 |
| MS.gene90254.t1 | AT1G22130 | 39.241 | 158 | 79 | 6 | 1 | 151 | 1 | 148 | 2.73e-16 | 77.4 |
| MS.gene90254.t1 | AT5G65080 | 59.322 | 59 | 24 | 0 | 1 | 59 | 8 | 66 | 1.03e-15 | 73.9 |
| MS.gene90254.t1 | AT1G77080 | 35.106 | 188 | 97 | 4 | 1 | 185 | 1 | 166 | 3.10e-15 | 72.0 |
| MS.gene90254.t1 | AT1G77080 | 36.264 | 182 | 91 | 4 | 1 | 179 | 1 | 160 | 5.24e-15 | 71.6 |
| MS.gene90254.t1 | AT1G77080 | 36.264 | 182 | 91 | 4 | 1 | 179 | 1 | 160 | 1.09e-14 | 70.5 |
| MS.gene90254.t1 | AT1G72350 | 56.140 | 57 | 25 | 0 | 3 | 59 | 44 | 100 | 2.34e-13 | 67.8 |
| MS.gene90254.t1 | AT3G66656 | 45.161 | 62 | 34 | 0 | 1 | 62 | 1 | 62 | 2.87e-13 | 66.6 |
| MS.gene90254.t1 | AT1G77080 | 35.326 | 184 | 86 | 4 | 1 | 179 | 1 | 156 | 3.01e-13 | 66.6 |
| MS.gene90254.t1 | AT2G34440 | 48.276 | 58 | 30 | 0 | 1 | 58 | 1 | 58 | 5.07e-13 | 65.9 |
| MS.gene90254.t1 | AT1G77080 | 36.250 | 160 | 69 | 4 | 1 | 155 | 1 | 132 | 6.32e-13 | 65.1 |
| MS.gene90254.t1 | AT4G18960 | 30.657 | 137 | 84 | 3 | 56 | 185 | 43 | 175 | 1.83e-12 | 64.3 |
| MS.gene90254.t1 | AT1G77950 | 51.724 | 58 | 28 | 0 | 1 | 58 | 1 | 58 | 1.90e-12 | 65.5 |
| MS.gene90254.t1 | AT1G77950 | 51.724 | 58 | 28 | 0 | 1 | 58 | 1 | 58 | 1.90e-12 | 65.5 |
| MS.gene90254.t1 | AT1G77950 | 51.724 | 58 | 28 | 0 | 1 | 58 | 1 | 58 | 1.90e-12 | 65.5 |
| MS.gene90254.t1 | AT1G77950 | 51.724 | 58 | 28 | 0 | 1 | 58 | 1 | 58 | 1.90e-12 | 65.5 |
| MS.gene90254.t1 | AT4G18960 | 31.852 | 135 | 81 | 3 | 56 | 183 | 43 | 173 | 5.65e-12 | 63.9 |
| MS.gene90254.t1 | AT4G18960 | 31.852 | 135 | 81 | 3 | 56 | 183 | 43 | 173 | 5.65e-12 | 63.9 |
| MS.gene90254.t1 | AT1G69540 | 54.717 | 53 | 24 | 0 | 1 | 53 | 1 | 53 | 5.68e-12 | 65.1 |
| MS.gene90254.t1 | AT1G77080 | 59.322 | 59 | 24 | 0 | 1 | 59 | 1 | 59 | 5.73e-12 | 63.9 |
| MS.gene90254.t1 | AT1G69540 | 54.717 | 53 | 24 | 0 | 1 | 53 | 1 | 53 | 7.24e-12 | 64.7 |
| MS.gene90254.t1 | AT2G24840 | 33.333 | 114 | 60 | 2 | 3 | 116 | 64 | 161 | 8.83e-12 | 63.9 |
| MS.gene90254.t1 | AT1G18750 | 54.902 | 51 | 23 | 0 | 1 | 51 | 1 | 51 | 1.07e-11 | 64.3 |
| MS.gene90254.t1 | AT1G18750 | 54.902 | 51 | 23 | 0 | 1 | 51 | 1 | 51 | 1.25e-11 | 64.3 |
| MS.gene90254.t1 | AT1G18750 | 54.902 | 51 | 23 | 0 | 1 | 51 | 1 | 51 | 1.43e-11 | 63.9 |
| MS.gene90254.t1 | AT2G03060 | 47.541 | 61 | 32 | 0 | 1 | 61 | 1 | 61 | 2.83e-11 | 63.2 |
| MS.gene90254.t1 | AT2G03060 | 47.541 | 61 | 32 | 0 | 1 | 61 | 1 | 61 | 2.83e-11 | 63.2 |
| MS.gene90254.t1 | AT2G03060 | 47.541 | 61 | 32 | 0 | 1 | 61 | 1 | 61 | 2.83e-11 | 63.2 |
| MS.gene90254.t1 | AT2G03060 | 47.541 | 61 | 32 | 0 | 1 | 61 | 1 | 61 | 3.39e-11 | 62.8 |
| MS.gene90254.t1 | AT1G69120 | 34.545 | 110 | 71 | 1 | 75 | 183 | 1 | 110 | 8.48e-11 | 60.1 |
Find 38 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCCAAACCAGATAGTTCT+TGG | 0.282659 | 4.2:-20172300 | None:intergenic |
| AAGAATGAATCTCTTCCTTT+TGG | 0.294820 | 4.2:+20162238 | MS.gene90254:CDS |
| GATCAATGAACTACTCAAAA+AGG | 0.332254 | 4.2:+20172544 | MS.gene90254:CDS |
| TTTATGACTACGCAAGTTCC+AGG | 0.371320 | 4.2:+20162212 | MS.gene90254:CDS |
| TGGTAAATGCAGGCAATTGA+TGG | 0.381521 | 4.2:+20172276 | MS.gene90254:intron |
| AACAGAAAGCAGAGCTCAAC+TGG | 0.386751 | 4.2:+20174933 | MS.gene90254:CDS |
| AACCAAACATTACAAGCAAA+AGG | 0.399100 | 4.2:+20174869 | MS.gene90254:CDS |
| GGGCAGCACTCGGCTTCATT+AGG | 0.405953 | 4.2:+20174809 | MS.gene90254:CDS |
| GGGCCAAGAACTATCTGGTT+TGG | 0.426904 | 4.2:+20172297 | MS.gene90254:CDS |
| TCTTTGAAAACGTCACTTGA+CGG | 0.460305 | 4.2:-20162099 | None:intergenic |
| TTGATGGGCCAAGAACTATC+TGG | 0.460934 | 4.2:+20172292 | MS.gene90254:CDS |
| TCAAGCAATGGATCCTACTT+TGG | 0.468684 | 4.2:+20165094 | MS.gene90254:CDS |
| AACTTGTGCATCACAAAGAA+TGG | 0.480043 | 4.2:-20162158 | None:intergenic |
| ATTCTTTGTGATGCACAAGT+TGG | 0.486752 | 4.2:+20162160 | MS.gene90254:CDS |
| AAGGGCAACTACAGAACAAA+TGG | 0.487758 | 4.2:+20174888 | MS.gene90254:CDS |
| GCAGCATCTAGAAAGTCAAT+TGG | 0.488912 | 4.2:+20172333 | MS.gene90254:CDS |
| TCATTAGGAAACACACCATC+AGG | 0.505077 | 4.2:+20174824 | MS.gene90254:CDS |
| GAGGAAAGATTGTGATTCGA+AGG | 0.506795 | 4.2:+20162059 | MS.gene90254:CDS |
| CACAGTAAAACAAAGCCAAA+AGG | 0.509371 | 4.2:-20162253 | None:intergenic |
| GAAAAGCATCCGCACGAGAA+AGG | 0.511901 | 4.2:+20172366 | MS.gene90254:CDS |
| CGTAAGAAGATAGACCTCAT+TGG | 0.520369 | 4.2:+20172689 | MS.gene90254:CDS |
| ATTACCTTGAGTTCCAAAGT+AGG | 0.526581 | 4.2:-20165107 | None:intergenic |
| GGTAAATGCAGGCAATTGAT+GGG | 0.531912 | 4.2:+20172277 | MS.gene90254:intron |
| GTAGAATTAAAGATGGAGAG+AGG | 0.532068 | 4.2:+20162040 | None:intergenic |
| GGATCCTACTTTGGAACTCA+AGG | 0.536262 | 4.2:+20165103 | MS.gene90254:CDS |
| AAGAGATTCATTCTTATACC+TGG | 0.540048 | 4.2:-20162230 | None:intergenic |
| TAGGATCCATTGCTTGATGA+TGG | 0.549650 | 4.2:-20165088 | None:intergenic |
| ACCAAACATTACAAGCAAAA+GGG | 0.555816 | 4.2:+20174870 | MS.gene90254:CDS |
| GTCATAAAGCTTGTGAGTAG+AGG | 0.558703 | 4.2:-20162197 | None:intergenic |
| AAAGAGAAGCAGCAAGCTTG+AGG | 0.564224 | 4.2:+20172108 | MS.gene90254:CDS |
| TGAATGCAGTGGGCAGCACT+CGG | 0.567099 | 4.2:+20174799 | MS.gene90254:intron |
| GTCGCGTGGCTTGAGCCTGA+TGG | 0.579372 | 4.2:-20174839 | None:intergenic |
| CAATAAATACCTTTCTCGTG+CGG | 0.603657 | 4.2:-20172375 | None:intergenic |
| AAATGGTTAACGTGCTCCCA+AGG | 0.607570 | 4.2:+20174905 | MS.gene90254:CDS |
| AGAGGACCATCATCAAGCAA+TGG | 0.621274 | 4.2:+20165082 | MS.gene90254:CDS |
| GCGTTATAACAAGTTAGTAG+AGG | 0.643614 | 4.2:+20165064 | MS.gene90254:CDS |
| TTTGGTTGTGTGTAGTCGCG+TGG | 0.658067 | 4.2:-20174853 | None:intergenic |
| AGCACTTGAATGATAGCCAA+AGG | 0.659588 | 4.2:+20172141 | MS.gene90254:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 20162052 | 20174969 | 20162052 | ID=MS.gene90254 |
| chr4.2 | mRNA | 20162052 | 20174969 | 20162052 | ID=MS.gene90254.t1;Parent=MS.gene90254 |
| chr4.2 | exon | 20162052 | 20162272 | 20162052 | ID=MS.gene90254.t1.exon1;Parent=MS.gene90254.t1 |
| chr4.2 | CDS | 20162052 | 20162272 | 20162052 | ID=cds.MS.gene90254.t1;Parent=MS.gene90254.t1 |
| chr4.2 | exon | 20165046 | 20165124 | 20165046 | ID=MS.gene90254.t1.exon2;Parent=MS.gene90254.t1 |
| chr4.2 | CDS | 20165046 | 20165124 | 20165046 | ID=cds.MS.gene90254.t1;Parent=MS.gene90254.t1 |
| chr4.2 | exon | 20172101 | 20172162 | 20172101 | ID=MS.gene90254.t1.exon3;Parent=MS.gene90254.t1 |
| chr4.2 | CDS | 20172101 | 20172162 | 20172101 | ID=cds.MS.gene90254.t1;Parent=MS.gene90254.t1 |
| chr4.2 | exon | 20172288 | 20172387 | 20172288 | ID=MS.gene90254.t1.exon4;Parent=MS.gene90254.t1 |
| chr4.2 | CDS | 20172288 | 20172387 | 20172288 | ID=cds.MS.gene90254.t1;Parent=MS.gene90254.t1 |
| chr4.2 | exon | 20172524 | 20172565 | 20172524 | ID=MS.gene90254.t1.exon5;Parent=MS.gene90254.t1 |
| chr4.2 | CDS | 20172524 | 20172565 | 20172524 | ID=cds.MS.gene90254.t1;Parent=MS.gene90254.t1 |
| chr4.2 | exon | 20172656 | 20172736 | 20172656 | ID=MS.gene90254.t1.exon6;Parent=MS.gene90254.t1 |
| chr4.2 | CDS | 20172656 | 20172736 | 20172656 | ID=cds.MS.gene90254.t1;Parent=MS.gene90254.t1 |
| chr4.2 | exon | 20174808 | 20174969 | 20174808 | ID=MS.gene90254.t1.exon7;Parent=MS.gene90254.t1 |
| chr4.2 | CDS | 20174808 | 20174969 | 20174808 | ID=cds.MS.gene90254.t1;Parent=MS.gene90254.t1 |
| Gene Sequence |
| Protein sequence |
