Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90333.t1 | KOM27282.1 | 83.1 | 148 | 25 | 0 | 1 | 148 | 1 | 148 | 7.40E-65 | 256.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90333.t1 | Q9LYW3 | 77.0 | 148 | 34 | 0 | 1 | 148 | 1 | 148 | 9.5e-61 | 234.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90333.t1 | A0A1S3VC31 | 83.1 | 148 | 25 | 0 | 1 | 148 | 1 | 148 | 5.3e-65 | 256.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene90333.t1 | TR | MED7 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90333.t1 | MTR_6g471120 | 87.162 | 148 | 19 | 0 | 1 | 148 | 1 | 148 | 6.03e-79 | 231 |
| MS.gene90333.t1 | MTR_2g094720 | 86.486 | 148 | 20 | 0 | 1 | 148 | 1 | 148 | 2.71e-78 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90333.t1 | AT5G03500 | 77.703 | 148 | 33 | 0 | 1 | 148 | 1 | 148 | 1.75e-77 | 227 |
| MS.gene90333.t1 | AT5G03500 | 77.703 | 148 | 33 | 0 | 1 | 148 | 1 | 148 | 1.75e-77 | 227 |
| MS.gene90333.t1 | AT5G03500 | 77.703 | 148 | 33 | 0 | 1 | 148 | 1 | 148 | 1.75e-77 | 227 |
| MS.gene90333.t1 | AT5G03500 | 77.703 | 148 | 33 | 0 | 1 | 148 | 1 | 148 | 1.75e-77 | 227 |
| MS.gene90333.t1 | AT5G03500 | 77.703 | 148 | 33 | 0 | 1 | 148 | 1 | 148 | 1.75e-77 | 227 |
| MS.gene90333.t1 | AT5G03500 | 77.703 | 148 | 33 | 0 | 1 | 148 | 1 | 148 | 1.75e-77 | 227 |
| MS.gene90333.t1 | AT5G03500 | 77.703 | 148 | 33 | 0 | 1 | 148 | 11 | 158 | 2.41e-77 | 227 |
| MS.gene90333.t1 | AT5G03220 | 77.703 | 148 | 33 | 0 | 1 | 148 | 1 | 148 | 5.66e-72 | 213 |
Find 40 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGACTTTACAAACGTTATT+TGG | 0.213759 | 7.4:+43225023 | MS.gene90333:CDS |
| ATCAACATTGATTCACATTA+TGG | 0.226012 | 7.4:+43228032 | MS.gene90333:CDS |
| AGAACTGCAACTACACATTT+TGG | 0.235567 | 7.4:+43227146 | MS.gene90333:CDS |
| CAAGGGACTTACATTTGTTT+TGG | 0.282122 | 7.4:+43225084 | MS.gene90333:CDS |
| CAAATGTAAGTCCCTTGAAT+TGG | 0.398300 | 7.4:-43225078 | None:intergenic |
| AAATTCATTGCATCCTCATC+AGG | 0.403386 | 7.4:+43227260 | MS.gene90333:CDS |
| TGAATTGGCAGTGGAGGCTC+TGG | 0.409171 | 7.4:-43225063 | None:intergenic |
| CGTTTGTAAAGTCTATAATA+AGG | 0.411984 | 7.4:-43225015 | None:intergenic |
| CTATAATAAGGTGGTGGTGG+TGG | 0.415430 | 7.4:-43225003 | None:intergenic |
| ACCCCTTGGTCTTCCAAGCT+TGG | 0.435170 | 7.4:-43226185 | None:intergenic |
| TGTCCTCCACGGCTTGTTTG+AGG | 0.439661 | 7.4:-43228071 | None:intergenic |
| CGTGCCAACATTCGGCCCCT+TGG | 0.447783 | 7.4:-43226222 | None:intergenic |
| GTGCCAACATTCGGCCCCTT+GGG | 0.455092 | 7.4:-43226221 | None:intergenic |
| GAGCCTCCACTGCCAATTCA+AGG | 0.470335 | 7.4:+43225066 | MS.gene90333:CDS |
| AAAGATAGCGTGCCAACATT+CGG | 0.475023 | 7.4:-43226230 | None:intergenic |
| TATAATAAGGTGGTGGTGGT+GGG | 0.505040 | 7.4:-43225002 | None:intergenic |
| CAGCGACGTTCTACCAAGCT+TGG | 0.511434 | 7.4:+43226172 | MS.gene90333:CDS |
| AGTCTATAATAAGGTGGTGG+TGG | 0.525802 | 7.4:-43225006 | None:intergenic |
| GATAGAGCTGGCGAACCCCT+TGG | 0.527680 | 7.4:-43226199 | None:intergenic |
| ACTCTTCTTGCATACTGCGA+TGG | 0.541103 | 7.4:-43227195 | None:intergenic |
| TATCCCAAGGGGCCGAATGT+TGG | 0.544192 | 7.4:+43226218 | MS.gene90333:CDS |
| TCGGCCCCTTGGGATAGAGC+TGG | 0.545570 | 7.4:-43226211 | None:intergenic |
| GTCCCTTGAATTGGCAGTGG+AGG | 0.554082 | 7.4:-43225069 | None:intergenic |
| CAAGCTTGGTAGAACGTCGC+TGG | 0.558097 | 7.4:-43226171 | None:intergenic |
| GGTTCGCCAGCTCTATCCCA+AGG | 0.564619 | 7.4:+43226205 | MS.gene90333:CDS |
| AGCCTCCACTGCCAATTCAA+GGG | 0.571071 | 7.4:+43225067 | MS.gene90333:CDS |
| GTTCGCCAGCTCTATCCCAA+GGG | 0.572140 | 7.4:+43226206 | MS.gene90333:CDS |
| TAAGTCCCTTGAATTGGCAG+TGG | 0.578671 | 7.4:-43225072 | None:intergenic |
| TACCAAGCTTGGAAGACCAA+GGG | 0.580298 | 7.4:+43226183 | MS.gene90333:CDS |
| ATACCTCTTTATGTCCTCCA+CGG | 0.587378 | 7.4:-43228082 | None:intergenic |
| TAAAGTCTATAATAAGGTGG+TGG | 0.589868 | 7.4:-43225009 | None:intergenic |
| AAGCCGTGGAGGACATAAAG+AGG | 0.595311 | 7.4:+43228079 | MS.gene90333:CDS |
| AGAAGATTCAATACCTGATG+AGG | 0.596576 | 7.4:-43227273 | None:intergenic |
| AGAGCGCCTCAAACAAGCCG+TGG | 0.612592 | 7.4:+43228065 | MS.gene90333:CDS |
| CTACCAAGCTTGGAAGACCA+AGG | 0.640293 | 7.4:+43226182 | MS.gene90333:CDS |
| ACCAAGCTTGGAAGACCAAG+GGG | 0.650433 | 7.4:+43226184 | MS.gene90333:CDS |
| TTCGCCAGCTCTATCCCAAG+GGG | 0.660989 | 7.4:+43226207 | MS.gene90333:CDS |
| TTGTAAAGTCTATAATAAGG+TGG | 0.663902 | 7.4:-43225012 | None:intergenic |
| GCGCCTCAAACAAGCCGTGG+AGG | 0.666851 | 7.4:+43228068 | MS.gene90333:CDS |
| TAGATTTCAAGAAGGAACTG+AGG | 0.694233 | 7.4:+43227112 | MS.gene90333:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATACAATTATATACA+AGG | + | chr7.4:43227300-43227319 | MS.gene90333:intron | 10.0% |
| !! | TATATAAAATCAAATAACAA+GGG | - | chr7.4:43227094-43227113 | None:intergenic | 10.0% |
| !! | ATAGAAATATCAAAATCATA+AGG | - | chr7.4:43225143-43225162 | None:intergenic | 15.0% |
| !! | ATATAAAATCAAATAACAAG+GGG | - | chr7.4:43227093-43227112 | None:intergenic | 15.0% |
| !! | CTATATAAAATCAAATAACA+AGG | - | chr7.4:43227095-43227114 | None:intergenic | 15.0% |
| !!! | ATTTAGCATTATTTTTGTTT+TGG | - | chr7.4:43227489-43227508 | None:intergenic | 15.0% |
| !!! | ATTTATGTATATGTATTTTG+TGG | - | chr7.4:43227558-43227577 | None:intergenic | 15.0% |
| !!! | ATTTTATATAGATTTCAAGA+AGG | + | chr7.4:43227104-43227123 | MS.gene90333:intron | 15.0% |
| !!! | ATTTTGTTCATTTTTTGAAA+AGG | - | chr7.4:43227747-43227766 | None:intergenic | 15.0% |
| !!! | GTTATACAAAATTTTACTAT+AGG | + | chr7.4:43225306-43225325 | MS.gene90333:intron | 15.0% |
| !!! | TTATGATTTTGATATTTCTA+TGG | + | chr7.4:43225142-43225161 | MS.gene90333:intron | 15.0% |
| !!! | TTTTGTTCATTTTTTGAAAA+GGG | - | chr7.4:43227746-43227765 | None:intergenic | 15.0% |
| !! | AACTAAAAAAAAAAACACGA+GGG | - | chr7.4:43225168-43225187 | None:intergenic | 20.0% |
| !! | AATCACTCAAATTATGATAT+GGG | - | chr7.4:43227022-43227041 | None:intergenic | 20.0% |
| !! | ATATACAAGGTTATCAAAAT+CGG | + | chr7.4:43227313-43227332 | MS.gene90333:intron | 20.0% |
| !! | CTAATCAATTTCAAAATGTT+GGG | - | chr7.4:43225628-43225647 | None:intergenic | 20.0% |
| !! | TATAAAATCAAATAACAAGG+GGG | - | chr7.4:43227092-43227111 | None:intergenic | 20.0% |
| !! | TCTAATCAATTTCAAAATGT+TGG | - | chr7.4:43225629-43225648 | None:intergenic | 20.0% |
| !! | TTATGAAGCAATGAATATTT+AGG | - | chr7.4:43226981-43227000 | None:intergenic | 20.0% |
| !!! | AAAATTTTGTATAACTACCT+TGG | - | chr7.4:43225301-43225320 | None:intergenic | 20.0% |
| !!! | AGTGAAAGAATGAATATTTT+TGG | + | chr7.4:43227650-43227669 | MS.gene90333:intron | 20.0% |
| !!! | GATTTAGTTTCTTATGTTTA+TGG | + | chr7.4:43225777-43225796 | MS.gene90333:intron | 20.0% |
| !!! | TACTAAACAAACTTTTGAAA+AGG | - | chr7.4:43225893-43225912 | None:intergenic | 20.0% |
| !!! | TGTATTTTCTCTATCATTAA+AGG | + | chr7.4:43227063-43227082 | MS.gene90333:intron | 20.0% |
| !!! | TTTCAAAAGTTTGTTTAGTA+AGG | + | chr7.4:43225893-43225912 | MS.gene90333:intron | 20.0% |
| ! | AAAATGTGAAAGATAAACCT+AGG | - | chr7.4:43226548-43226567 | None:intergenic | 25.0% |
| ! | AAATGTGAAAGATAAACCTA+GGG | - | chr7.4:43226547-43226566 | None:intergenic | 25.0% |
| ! | CAACTAAAAAAAAAAACACG+AGG | - | chr7.4:43225169-43225188 | None:intergenic | 25.0% |
| ! | CAATCACTCAAATTATGATA+TGG | - | chr7.4:43227023-43227042 | None:intergenic | 25.0% |
| ! | CATATCATAATTTGAGTGAT+TGG | + | chr7.4:43227021-43227040 | MS.gene90333:intron | 25.0% |
| ! | CGTTTGTAAAGTCTATAATA+AGG | - | chr7.4:43225018-43225037 | None:intergenic | 25.0% |
| ! | TAAAATAAATGCAGTTACCT+TGG | + | chr7.4:43226586-43226605 | MS.gene90333:intron | 25.0% |
| ! | TAACTGATGTAAATGTGATT+TGG | - | chr7.4:43226770-43226789 | None:intergenic | 25.0% |
| ! | TAGACTTTACAAACGTTATT+TGG | + | chr7.4:43225023-43225042 | MS.gene90333:CDS | 25.0% |
| ! | TATACAAGGTTATCAAAATC+GGG | + | chr7.4:43227314-43227333 | MS.gene90333:intron | 25.0% |
| ! | TTACTATAGGAATAGCTTAT+AGG | + | chr7.4:43225319-43225338 | MS.gene90333:intron | 25.0% |
| ! | TTCAACCATTCAATCATAAA+CGG | - | chr7.4:43226020-43226039 | None:intergenic | 25.0% |
| ! | TTGTAAAGTCTATAATAAGG+TGG | - | chr7.4:43225015-43225034 | None:intergenic | 25.0% |
| !! | ATCTTTCACATTTTCAGTTT+TGG | + | chr7.4:43226554-43226573 | MS.gene90333:intron | 25.0% |
| !! | ATTACAATTTTGAACACACT+AGG | + | chr7.4:43226851-43226870 | MS.gene90333:intron | 25.0% |
| !! | TTTTATAGGGTTATGATGAT+TGG | + | chr7.4:43225956-43225975 | MS.gene90333:intron | 25.0% |
| !!! | AAAAATTTTAACGACTCACA+TGG | - | chr7.4:43226313-43226332 | None:intergenic | 25.0% |
| !!! | AATGAATATTTTTGGCCTTT+TGG | + | chr7.4:43227658-43227677 | MS.gene90333:intron | 25.0% |
| !!! | ATCAACATTGATTCACATTA+TGG | + | chr7.4:43228032-43228051 | MS.gene90333:CDS | 25.0% |
| !!! | ATGAATATTTTTGGCCTTTT+GGG | + | chr7.4:43227659-43227678 | MS.gene90333:intron | 25.0% |
| !!! | CAATATTCTTCTTACTTTTC+TGG | + | chr7.4:43226446-43226465 | MS.gene90333:intron | 25.0% |
| !!! | CTCGTGTTTTTTTTTTTAGT+TGG | + | chr7.4:43225167-43225186 | MS.gene90333:intron | 25.0% |
| !!! | TGTTTCTTTTTTCGTTTTCT+GGG | + | chr7.4:43227969-43227988 | MS.gene90333:intron | 25.0% |
| !!! | TTGTTTCTTTTTTCGTTTTC+TGG | + | chr7.4:43227968-43227987 | MS.gene90333:intron | 25.0% |
| AAAATCGCAATCAAAATCGA+AGG | + | chr7.4:43227380-43227399 | MS.gene90333:intron | 30.0% | |
| AAATGAACGTGTAACTAGTT+AGG | + | chr7.4:43227574-43227593 | MS.gene90333:intron | 30.0% | |
| AACCAACTAGATAGAAATCA+TGG | - | chr7.4:43225927-43225946 | None:intergenic | 30.0% | |
| AATTTGAATGAGTGCTTTGT+TGG | + | chr7.4:43225710-43225729 | MS.gene90333:intron | 30.0% | |
| ACATCATGTATTTACTCTGT+AGG | + | chr7.4:43228005-43228024 | MS.gene90333:intron | 30.0% | |
| ACCAACTAGATAGAAATCAT+GGG | - | chr7.4:43225926-43225945 | None:intergenic | 30.0% | |
| ATGATTTCTATCTAGTTGGT+TGG | + | chr7.4:43225926-43225945 | MS.gene90333:intron | 30.0% | |
| CAAAAATACACTTACAGAAG+TGG | - | chr7.4:43225434-43225453 | None:intergenic | 30.0% | |
| CTGGTCTATGTAAAAAACAA+AGG | - | chr7.4:43226155-43226174 | None:intergenic | 30.0% | |
| GAAACAAGCATGAAAATGAA+TGG | - | chr7.4:43227955-43227974 | None:intergenic | 30.0% | |
| GAAATACATAAGCTTTGCTT+TGG | - | chr7.4:43226427-43226446 | None:intergenic | 30.0% | |
| GACAATAAAACACAAACCTT+AGG | - | chr7.4:43226093-43226112 | None:intergenic | 30.0% | |
| GATTAGATGACACGAAAAAA+TGG | + | chr7.4:43225642-43225661 | MS.gene90333:intron | 30.0% | |
| GTATTTAGTGACATAACATG+TGG | - | chr7.4:43226748-43226767 | None:intergenic | 30.0% | |
| GTCATTGTAAACACTATGAA+AGG | + | chr7.4:43225387-43225406 | MS.gene90333:intron | 30.0% | |
| GTTATTAGAGATTTCACTGT+AGG | + | chr7.4:43226786-43226805 | MS.gene90333:intron | 30.0% | |
| TAAAATCGCAATCAAAATCG+AGG | + | chr7.4:43227379-43227398 | MS.gene90333:intron | 30.0% | |
| TAAAGTCTATAATAAGGTGG+TGG | - | chr7.4:43225012-43225031 | None:intergenic | 30.0% | |
| TCAACCATTCAATCATAAAC+GGG | - | chr7.4:43226019-43226038 | None:intergenic | 30.0% | |
| TCGATATAGGATAACAAAGT+CGG | + | chr7.4:43227428-43227447 | MS.gene90333:intron | 30.0% | |
| ! | AAATCGAAGGATTTTACTCA+AGG | + | chr7.4:43227393-43227412 | MS.gene90333:intron | 30.0% |
| ! | GACTTTTGTAGAATCGATAT+AGG | + | chr7.4:43227415-43227434 | MS.gene90333:intron | 30.0% |
| ! | GGTTTAGTTCATCTTTAACT+AGG | + | chr7.4:43227595-43227614 | MS.gene90333:intron | 30.0% |
| !! | GACTTTACTTCAAGTTGAAA+GGG | + | chr7.4:43227336-43227355 | MS.gene90333:intron | 30.0% |
| !! | TATTGATTTGGCTCTTACTA+AGG | + | chr7.4:43225752-43225771 | MS.gene90333:intron | 30.0% |
| !! | TTTCTTCGTATAGTTTTGCA+GGG | + | chr7.4:43226060-43226079 | MS.gene90333:intron | 30.0% |
| !!! | AGGATTTTGATGGATTTTGA+AGG | - | chr7.4:43227770-43227789 | None:intergenic | 30.0% |
| !!! | GGTTGGTATGGTTTTTTATA+GGG | + | chr7.4:43225943-43225962 | MS.gene90333:intron | 30.0% |
| !!! | TGGTTGGTATGGTTTTTTAT+AGG | + | chr7.4:43225942-43225961 | MS.gene90333:intron | 30.0% |
| AAATTCATTGCATCCTCATC+AGG | + | chr7.4:43227260-43227279 | MS.gene90333:CDS | 35.0% | |
| AACCATTCAATCATAAACGG+GGG | - | chr7.4:43226017-43226036 | None:intergenic | 35.0% | |
| AATAAATGCAGTTACCTTGG+AGG | + | chr7.4:43226589-43226608 | MS.gene90333:intron | 35.0% | |
| AATCGGGTCAATTTACAAAC+CGG | + | chr7.4:43227708-43227727 | MS.gene90333:intron | 35.0% | |
| ACCCATGATTTCTATCTAGT+TGG | + | chr7.4:43225922-43225941 | MS.gene90333:intron | 35.0% | |
| AGAAGATTCAATACCTGATG+AGG | - | chr7.4:43227276-43227295 | None:intergenic | 35.0% | |
| AGATTATACAATCACCTCCA+AGG | - | chr7.4:43226606-43226625 | None:intergenic | 35.0% | |
| AGGAGTTCTTGCAAAATGAT+TGG | - | chr7.4:43225873-43225892 | None:intergenic | 35.0% | |
| CAAATGTAAGTCCCTTGAAT+TGG | - | chr7.4:43225081-43225100 | None:intergenic | 35.0% | |
| CAACCATTCAATCATAAACG+GGG | - | chr7.4:43226018-43226037 | None:intergenic | 35.0% | |
| CAATGACAATGCATATCCAT+AGG | - | chr7.4:43225374-43225393 | None:intergenic | 35.0% | |
| CGATATAGGATAACAAAGTC+GGG | + | chr7.4:43227429-43227448 | MS.gene90333:intron | 35.0% | |
| GTAGCTCAACTGATCATATA+AGG | - | chr7.4:43226901-43226920 | None:intergenic | 35.0% | |
| GTTTATACAACCAAGACCTA+TGG | + | chr7.4:43225355-43225374 | MS.gene90333:intron | 35.0% | |
| TACCCAAAACCTTAAGACAA+CGG | - | chr7.4:43225532-43225551 | None:intergenic | 35.0% | |
| TAGATTTCAAGAAGGAACTG+AGG | + | chr7.4:43227112-43227131 | MS.gene90333:intron | 35.0% | |
| TTAGCTGCTCAATTTGAATC+TGG | + | chr7.4:43226268-43226287 | MS.gene90333:intron | 35.0% | |
| TTATTGTCGTGATCTCTTTC+AGG | + | chr7.4:43226105-43226124 | MS.gene90333:intron | 35.0% | |
| ! | AAAAGGGTCAATTTTTGACC+CGG | - | chr7.4:43227730-43227749 | None:intergenic | 35.0% |
| ! | ACACTAGGTTCTCTCAATTT+TGG | + | chr7.4:43226866-43226885 | MS.gene90333:intron | 35.0% |
| ! | ACTTCTGTGCTCAATCTTTT+AGG | + | chr7.4:43226633-43226652 | MS.gene90333:intron | 35.0% |
| ! | AGAACTGCAACTACACATTT+TGG | + | chr7.4:43227146-43227165 | MS.gene90333:CDS | 35.0% |
| ! | CAAAATCCTGCGATTTTGAA+CGG | + | chr7.4:43227781-43227800 | MS.gene90333:intron | 35.0% |
| ! | CAAGGGACTTACATTTGTTT+TGG | + | chr7.4:43225084-43225103 | MS.gene90333:CDS | 35.0% |
| ! | CACATTGGTTAGAAAAGTGT+AGG | + | chr7.4:43225484-43225503 | MS.gene90333:intron | 35.0% |
| ! | TCAAAATCGCAGGATTTTGA+TGG | - | chr7.4:43227780-43227799 | None:intergenic | 35.0% |
| ! | TGTAACTATTGAGGAAGTGT+GGG | + | chr7.4:43227624-43227643 | MS.gene90333:intron | 35.0% |
| ! | TGTGCAGCAGAATATTGATT+TGG | + | chr7.4:43225740-43225759 | MS.gene90333:intron | 35.0% |
| ! | TTATTTTCACAAGCTCTCCA+AGG | + | chr7.4:43225281-43225300 | MS.gene90333:intron | 35.0% |
| ! | TTCTATCTAGTTGGTTGGTA+TGG | + | chr7.4:43225931-43225950 | MS.gene90333:intron | 35.0% |
| !! | AAGTTGATAGTTCTGTGTTG+AGG | + | chr7.4:43226660-43226679 | MS.gene90333:intron | 35.0% |
| !! | CGATTTTGTGCGATTTTGAT+AGG | + | chr7.4:43227810-43227829 | MS.gene90333:intron | 35.0% |
| !! | CTTTGCTTTGGCTTTAAATG+CGG | - | chr7.4:43226415-43226434 | None:intergenic | 35.0% |
| !! | CTTTTGGGTATTTATAGAGC+CGG | + | chr7.4:43227674-43227693 | MS.gene90333:intron | 35.0% |
| !! | GGACTTTACTTCAAGTTGAA+AGG | + | chr7.4:43227335-43227354 | MS.gene90333:intron | 35.0% |
| !! | GTTTCTTCGTATAGTTTTGC+AGG | + | chr7.4:43226059-43226078 | MS.gene90333:intron | 35.0% |
| !! | TTTTCTGGTATGTTGTCTTG+CGG | + | chr7.4:43226461-43226480 | MS.gene90333:intron | 35.0% |
| !! | TTTTGGGTATTTATAGAGCC+GGG | + | chr7.4:43227675-43227694 | MS.gene90333:intron | 35.0% |
| !!! | CTGTTTTTGAGACTTTGCTA+GGG | + | chr7.4:43227840-43227859 | MS.gene90333:intron | 35.0% |
| !!! | TAAGGTTTTGGGTAAAAGTG+TGG | + | chr7.4:43225538-43225557 | MS.gene90333:intron | 35.0% |
| AAAGATAGCGTGCCAACATT+CGG | - | chr7.4:43226233-43226252 | None:intergenic | 40.0% | |
| AACTATACGAAGAAACCCTG+TGG | - | chr7.4:43226055-43226074 | None:intergenic | 40.0% | |
| ACCATAAACCCGTTGTCTTA+AGG | + | chr7.4:43225520-43225539 | MS.gene90333:intron | 40.0% | |
| ACCCAAAACCTTAAGACAAC+GGG | - | chr7.4:43225531-43225550 | None:intergenic | 40.0% | |
| AGGTGAACGTGTAACTATTG+AGG | + | chr7.4:43227615-43227634 | MS.gene90333:intron | 40.0% | |
| ATCGGGTCAATTTACAAACC+GGG | + | chr7.4:43227709-43227728 | MS.gene90333:intron | 40.0% | |
| CAATGCATATCCATAGGTCT+TGG | - | chr7.4:43225368-43225387 | None:intergenic | 40.0% | |
| CCTAGCAAAGTCTCAAAAAC+AGG | - | chr7.4:43227842-43227861 | None:intergenic | 40.0% | |
| CGGCTCTATAAATACCCAAA+AGG | - | chr7.4:43227676-43227695 | None:intergenic | 40.0% | |
| CTAAGGATCGACTAATCCAA+GGG | + | chr7.4:43226361-43226380 | MS.gene90333:intron | 40.0% | |
| CTCACTTGTATGATTGCTCT+GGG | + | chr7.4:43225568-43225587 | MS.gene90333:intron | 40.0% | |
| GTGTAACTATTGAGGAAGTG+TGG | + | chr7.4:43227623-43227642 | MS.gene90333:intron | 40.0% | |
| TAAGGATCGACTAATCCAAG+GGG | + | chr7.4:43226362-43226381 | MS.gene90333:intron | 40.0% | |
| TCTCACTTGTATGATTGCTC+TGG | + | chr7.4:43225567-43225586 | MS.gene90333:intron | 40.0% | |
| TGAAATCCGTTCAAAATCGC+AGG | - | chr7.4:43227790-43227809 | None:intergenic | 40.0% | |
| TGTGAAAGATAAACCTAGGG+AGG | - | chr7.4:43226544-43226563 | None:intergenic | 40.0% | |
| TTCAAAATGTTGGGTCACGA+GGG | - | chr7.4:43225619-43225638 | None:intergenic | 40.0% | |
| TTGAAAGGGAGTAGCAAAGT+CGG | + | chr7.4:43227350-43227369 | MS.gene90333:intron | 40.0% | |
| TTGCGTTCTGTAGTAAGTGT+GGG | + | chr7.4:43225451-43225470 | MS.gene90333:intron | 40.0% | |
| TTTCAAAATGTTGGGTCACG+AGG | - | chr7.4:43225620-43225639 | None:intergenic | 40.0% | |
| TTTGCGTTCTGTAGTAAGTG+TGG | + | chr7.4:43225450-43225469 | MS.gene90333:intron | 40.0% | |
| ! | AACCCGTTGTCTTAAGGTTT+TGG | + | chr7.4:43225526-43225545 | MS.gene90333:intron | 40.0% |
| ! | ACCAAAACGAAGCATTCATG+TGG | - | chr7.4:43226519-43226538 | None:intergenic | 40.0% |
| ! | ACCCGTTGTCTTAAGGTTTT+GGG | + | chr7.4:43225527-43225546 | MS.gene90333:intron | 40.0% |
| ! | ACCTTAAGACAACGGGTTTA+TGG | - | chr7.4:43225524-43225543 | None:intergenic | 40.0% |
| ! | AGTCGCAAAAACCTGGATTT+TGG | + | chr7.4:43227887-43227906 | MS.gene90333:intron | 40.0% |
| ! | AGTCTATAATAAGGTGGTGG+TGG | - | chr7.4:43225009-43225028 | None:intergenic | 40.0% |
| ! | GAATTTGTGCTGTTACCACA+GGG | + | chr7.4:43226037-43226056 | MS.gene90333:intron | 40.0% |
| ! | GTAACTATTGAGGAAGTGTG+GGG | + | chr7.4:43227625-43227644 | MS.gene90333:intron | 40.0% |
| ! | GTCGCAAAAACCTGGATTTT+GGG | + | chr7.4:43227888-43227907 | MS.gene90333:intron | 40.0% |
| ! | GTGGGTTAAAAGTCACACAT+TGG | + | chr7.4:43225469-43225488 | MS.gene90333:intron | 40.0% |
| ! | TAACTATTGAGGAAGTGTGG+GGG | + | chr7.4:43227626-43227645 | MS.gene90333:intron | 40.0% |
| ! | TCCACATGAATGCTTCGTTT+TGG | + | chr7.4:43226515-43226534 | MS.gene90333:intron | 40.0% |
| ! | TGAATTTGTGCTGTTACCAC+AGG | + | chr7.4:43226036-43226055 | MS.gene90333:intron | 40.0% |
| ! | TTTGCAGGGTAGTTTTCCTA+AGG | + | chr7.4:43226074-43226093 | MS.gene90333:intron | 40.0% |
| !! | TATAATAAGGTGGTGGTGGT+GGG | - | chr7.4:43225005-43225024 | None:intergenic | 40.0% |
| !!! | CCTGTTTTTGAGACTTTGCT+AGG | + | chr7.4:43227839-43227858 | MS.gene90333:intron | 40.0% |
| !!! | GGGACTTACATTTGTTTTGG+TGG | + | chr7.4:43225087-43225106 | MS.gene90333:CDS | 40.0% |
| AAAACTCCGTATCCGTCCTA+AGG | + | chr7.4:43226344-43226363 | MS.gene90333:intron | 45.0% | |
| ACCAGAGGACAATCCACATT+GGG | - | chr7.4:43225594-43225613 | None:intergenic | 45.0% | |
| ACCCGATTAAATCCATGACC+CGG | - | chr7.4:43227696-43227715 | None:intergenic | 45.0% | |
| ACTCTTCTTGCATACTGCGA+TGG | - | chr7.4:43227198-43227217 | None:intergenic | 45.0% | |
| AGCCGGGTCATGGATTTAAT+CGG | + | chr7.4:43227691-43227710 | MS.gene90333:intron | 45.0% | |
| CATTCAATCATAAACGGGGG+AGG | - | chr7.4:43226014-43226033 | None:intergenic | 45.0% | |
| CCTAAGGATCGACTAATCCA+AGG | + | chr7.4:43226360-43226379 | MS.gene90333:intron | 45.0% | |
| CGACTTAACTCCCAAAATCC+AGG | - | chr7.4:43227901-43227920 | None:intergenic | 45.0% | |
| CGGTCACAAAAGTCACTACA+TGG | + | chr7.4:43226694-43226713 | MS.gene90333:intron | 45.0% | |
| CTCCCCCGTTTATGATTGAA+TGG | + | chr7.4:43226012-43226031 | MS.gene90333:intron | 45.0% | |
| GTATTTATAGAGCCGGGTCA+TGG | + | chr7.4:43227681-43227700 | MS.gene90333:intron | 45.0% | |
| TAAGTCCCTTGAATTGGCAG+TGG | - | chr7.4:43225075-43225094 | None:intergenic | 45.0% | |
| TACCAAGCTTGGAAGACCAA+GGG | + | chr7.4:43226183-43226202 | MS.gene90333:CDS | 45.0% | |
| TACGCAAAGTCGCAAAAACC+TGG | + | chr7.4:43227880-43227899 | MS.gene90333:intron | 45.0% | |
| TGAAAGGGAGTAGCAAAGTC+GGG | + | chr7.4:43227351-43227370 | MS.gene90333:intron | 45.0% | |
| TTGGTGGAAGTTACACTGTG+AGG | + | chr7.4:43225103-43225122 | MS.gene90333:intron | 45.0% | |
| !! | CCTTGGATTAGTCGATCCTT+AGG | - | chr7.4:43226363-43226382 | None:intergenic | 45.0% |
| !! | CTATAATAAGGTGGTGGTGG+TGG | - | chr7.4:43225006-43225025 | None:intergenic | 45.0% |
| !! | GGATTAGTCGATCCTTAGGA+CGG | - | chr7.4:43226359-43226378 | None:intergenic | 45.0% |
| !! | GTGTTGAGGAAGTACTACGT+CGG | + | chr7.4:43226674-43226693 | MS.gene90333:intron | 45.0% |
| !! | TTCGTTTTGGTAACCTCCCT+AGG | + | chr7.4:43226528-43226547 | MS.gene90333:intron | 45.0% |
| ACCAAGCTTGGAAGACCAAG+GGG | + | chr7.4:43226184-43226203 | MS.gene90333:CDS | 50.0% | |
| AGCCTCCACTGCCAATTCAA+GGG | + | chr7.4:43225067-43225086 | MS.gene90333:CDS | 50.0% | |
| ATGTTGTCTTGCGGTGGTTC+TGG | + | chr7.4:43226470-43226489 | MS.gene90333:intron | 50.0% | |
| CAATCATAAACGGGGGAGGA+GGG | - | chr7.4:43226010-43226029 | None:intergenic | 50.0% | |
| CTACCAAGCTTGGAAGACCA+AGG | + | chr7.4:43226182-43226201 | MS.gene90333:CDS | 50.0% | |
| GACCAGAGGACAATCCACAT+TGG | - | chr7.4:43225595-43225614 | None:intergenic | 50.0% | |
| GCCGGGTCATGGATTTAATC+GGG | + | chr7.4:43227692-43227711 | MS.gene90333:intron | 50.0% | |
| GTCGATCCTTAGGACGGATA+CGG | - | chr7.4:43226353-43226372 | None:intergenic | 50.0% | |
| TCAATCATAAACGGGGGAGG+AGG | - | chr7.4:43226011-43226030 | None:intergenic | 50.0% | |
| TCTGGTATGTTGTCTTGCGG+TGG | + | chr7.4:43226464-43226483 | MS.gene90333:intron | 50.0% | |
| TGTGGCAAAAGAAAGAGCCG+AGG | - | chr7.4:43226730-43226749 | None:intergenic | 50.0% | |
| !! | TACATGGTGTTACGTCGCCT+CGG | + | chr7.4:43226710-43226729 | MS.gene90333:intron | 50.0% |
| CAAGCTTGGTAGAACGTCGC+TGG | - | chr7.4:43226174-43226193 | None:intergenic | 55.0% | |
| CAGCGACGTTCTACCAAGCT+TGG | + | chr7.4:43226172-43226191 | MS.gene90333:CDS | 55.0% | |
| CCAAACCTACCGTCCACTTG+CGG | + | chr7.4:43226386-43226405 | MS.gene90333:intron | 55.0% | |
| GAGCCTCCACTGCCAATTCA+AGG | + | chr7.4:43225066-43225085 | MS.gene90333:CDS | 55.0% | |
| GTCCCTTGAATTGGCAGTGG+AGG | - | chr7.4:43225072-43225091 | None:intergenic | 55.0% | |
| GTTCGCCAGCTCTATCCCAA+GGG | + | chr7.4:43226206-43226225 | MS.gene90333:CDS | 55.0% | |
| TATCCCAAGGGGCCGAATGT+TGG | + | chr7.4:43226218-43226237 | MS.gene90333:CDS | 55.0% | |
| TGAATTGGCAGTGGAGGCTC+TGG | - | chr7.4:43225066-43225085 | None:intergenic | 55.0% | |
| TTAAATGCGGTCGCCGCAAG+TGG | - | chr7.4:43226402-43226421 | None:intergenic | 55.0% | |
| TTCGCCAGCTCTATCCCAAG+GGG | + | chr7.4:43226207-43226226 | MS.gene90333:CDS | 55.0% | |
| ! | ACCCCTTGGTCTTCCAAGCT+TGG | - | chr7.4:43226188-43226207 | None:intergenic | 55.0% |
| ! | GCCCAATGTGGATTGTCCTC+TGG | + | chr7.4:43225590-43225609 | MS.gene90333:intron | 55.0% |
| ! | TGATTGCTCTGGGCCCAATG+TGG | + | chr7.4:43225578-43225597 | MS.gene90333:intron | 55.0% |
| ! | TGTCCTCCACGGCTTGTTTG+AGG | - | chr7.4:43228074-43228093 | None:intergenic | 55.0% |
| CCGCAAGTGGACGGTAGGTT+TGG | - | chr7.4:43226389-43226408 | None:intergenic | 60.0% | |
| GACGGTAGGTTTGGACCCCT+TGG | - | chr7.4:43226380-43226399 | None:intergenic | 60.0% | |
| GATAGAGCTGGCGAACCCCT+TGG | - | chr7.4:43226202-43226221 | None:intergenic | 60.0% | |
| GGTTCGCCAGCTCTATCCCA+AGG | + | chr7.4:43226205-43226224 | MS.gene90333:CDS | 60.0% | |
| GTGCCAACATTCGGCCCCTT+GGG | - | chr7.4:43226224-43226243 | None:intergenic | 60.0% | |
| TCATAAACGGGGGAGGAGGG+AGG | - | chr7.4:43226007-43226026 | None:intergenic | 60.0% | |
| ! | AGAGCGCCTCAAACAAGCCG+TGG | + | chr7.4:43228065-43228084 | MS.gene90333:CDS | 60.0% |
| ATGCGGTCGCCGCAAGTGGA+CGG | - | chr7.4:43226398-43226417 | None:intergenic | 65.0% | |
| CGTGCCAACATTCGGCCCCT+TGG | - | chr7.4:43226225-43226244 | None:intergenic | 65.0% | |
| GCGCCTCAAACAAGCCGTGG+AGG | + | chr7.4:43228068-43228087 | MS.gene90333:CDS | 65.0% | |
| TCGGCCCCTTGGGATAGAGC+TGG | - | chr7.4:43226214-43226233 | None:intergenic | 65.0% | |
| TGGGTCACGAGGGAGACCAG+AGG | - | chr7.4:43225609-43225628 | None:intergenic | 65.0% | |
| GGTCGCCGCAAGTGGACGGT+AGG | - | chr7.4:43226394-43226413 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 43224985 | 43228100 | 43224985 | ID=MS.gene90333 |
| chr7.4 | mRNA | 43224985 | 43228100 | 43224985 | ID=MS.gene90333.t1;Parent=MS.gene90333 |
| chr7.4 | exon | 43224985 | 43225119 | 43224985 | ID=MS.gene90333.t1.exon1;Parent=MS.gene90333.t1 |
| chr7.4 | CDS | 43224985 | 43225119 | 43224985 | ID=cds.MS.gene90333.t1;Parent=MS.gene90333.t1 |
| chr7.4 | exon | 43226170 | 43226239 | 43226170 | ID=MS.gene90333.t1.exon2;Parent=MS.gene90333.t1 |
| chr7.4 | CDS | 43226170 | 43226239 | 43226170 | ID=cds.MS.gene90333.t1;Parent=MS.gene90333.t1 |
| chr7.4 | exon | 43227115 | 43227281 | 43227115 | ID=MS.gene90333.t1.exon3;Parent=MS.gene90333.t1 |
| chr7.4 | CDS | 43227115 | 43227281 | 43227115 | ID=cds.MS.gene90333.t1;Parent=MS.gene90333.t1 |
| chr7.4 | exon | 43228027 | 43228100 | 43228027 | ID=MS.gene90333.t1.exon4;Parent=MS.gene90333.t1 |
| chr7.4 | CDS | 43228027 | 43228100 | 43228027 | ID=cds.MS.gene90333.t1;Parent=MS.gene90333.t1 |
| Gene Sequence |
| Protein sequence |
