Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90517.t1 | XP_004509147.1 | 75.1 | 489 | 100 | 6 | 1 | 477 | 1 | 479 | 7.60E-196 | 693.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90517.t1 | Q0JP99 | 31.9 | 452 | 274 | 10 | 39 | 477 | 65 | 495 | 2.0e-51 | 204.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90517.t1 | A0A1S2YSD0 | 75.1 | 489 | 100 | 6 | 1 | 477 | 1 | 479 | 5.5e-196 | 693.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene90517.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90517.t1 | MTR_2g102450 | 46.512 | 172 | 86 | 5 | 109 | 277 | 74 | 242 | 6.46e-37 | 139 |
| MS.gene90517.t1 | MTR_2g102450 | 46.512 | 172 | 86 | 5 | 109 | 277 | 128 | 296 | 1.89e-36 | 139 |
| MS.gene90517.t1 | MTR_3g101520 | 48.000 | 125 | 65 | 0 | 95 | 219 | 98 | 222 | 9.00e-36 | 132 |
| MS.gene90517.t1 | MTR_3g101520 | 48.000 | 125 | 65 | 0 | 95 | 219 | 106 | 230 | 1.59e-35 | 132 |
| MS.gene90517.t1 | MTR_4g008310 | 45.283 | 106 | 58 | 0 | 105 | 210 | 199 | 304 | 4.27e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90517.t1 | AT3G19184 | 50.427 | 117 | 58 | 0 | 96 | 212 | 103 | 219 | 1.74e-34 | 130 |
| MS.gene90517.t1 | AT3G19184 | 50.427 | 117 | 58 | 0 | 96 | 212 | 103 | 219 | 1.79e-34 | 130 |
| MS.gene90517.t1 | AT5G42700 | 51.724 | 116 | 52 | 1 | 98 | 213 | 64 | 175 | 2.40e-32 | 122 |
| MS.gene90517.t1 | AT5G42700 | 51.724 | 116 | 52 | 1 | 98 | 213 | 109 | 220 | 3.63e-32 | 123 |
| MS.gene90517.t1 | AT5G58280 | 44.538 | 119 | 65 | 1 | 109 | 227 | 113 | 230 | 3.65e-25 | 105 |
| MS.gene90517.t1 | AT5G58280 | 44.538 | 119 | 65 | 1 | 109 | 227 | 145 | 262 | 6.87e-25 | 105 |
| MS.gene90517.t1 | AT5G58280 | 44.538 | 119 | 65 | 1 | 109 | 227 | 146 | 263 | 7.28e-25 | 104 |
Find 68 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTGAACCCACCAAATTT+AGG | 0.149220 | 8.3:-24004480 | MS.gene90517:CDS |
| CCTGAATTTAAAGAGTTAAA+AGG | 0.230186 | 8.3:-24003118 | MS.gene90517:CDS |
| TGTTAGGGTTACCCTAAATT+TGG | 0.232020 | 8.3:+24004468 | None:intergenic |
| TTGTTAATTAATGTCGAAAA+TGG | 0.247163 | 8.3:-24006222 | None:intergenic |
| TTCACAAAACTAGGGAATTC+TGG | 0.261063 | 8.3:+24004996 | None:intergenic |
| AGATAGAAAACAACATTTAA+AGG | 0.273772 | 8.3:+24006053 | None:intergenic |
| AGAAAGAAGTTGCTGCTAAT+TGG | 0.286931 | 8.3:-24002589 | MS.gene90517:CDS |
| GTGATAGTTGTATCTTTATC+AGG | 0.288491 | 8.3:+24004631 | None:intergenic |
| AATTGAACCCACCAAATTTA+GGG | 0.306416 | 8.3:-24004479 | MS.gene90517:intron |
| CTCAGAGATTAGAAGATATA+TGG | 0.350074 | 8.3:-24002759 | MS.gene90517:CDS |
| ATTTGGTGGGTTCAATTAGT+TGG | 0.362472 | 8.3:+24004485 | None:intergenic |
| GTTAGCATAGCTTATGAAAC+TGG | 0.370804 | 8.3:-24002788 | MS.gene90517:CDS |
| ACAACATTTAAAGGAGACTT+TGG | 0.371950 | 8.3:+24006062 | None:intergenic |
| AATTTCAGAATCATAGTTGA+TGG | 0.381163 | 8.3:-24003088 | MS.gene90517:CDS |
| TTATGGGAGAGAGGTGTATG+AGG | 0.397309 | 8.3:-24006108 | MS.gene90517:CDS |
| TTGATTGCAGTTCAACTAAA+GGG | 0.407390 | 8.3:-24005091 | MS.gene90517:intron |
| ATCACATTAGAAGATGAATA+TGG | 0.425783 | 8.3:-24004613 | MS.gene90517:CDS |
| TTTGATTGCAGTTCAACTAA+AGG | 0.434875 | 8.3:-24005092 | MS.gene90517:intron |
| TGAAGGACTCCGATCACATT+TGG | 0.435239 | 8.3:-24005021 | MS.gene90517:CDS |
| ACTAAGCCTAAGCAATATAC+AGG | 0.437303 | 8.3:-24003199 | MS.gene90517:CDS |
| TTGCATTACAAGCTGACTGC+TGG | 0.442933 | 8.3:-24002965 | MS.gene90517:CDS |
| GTAGAGAGTTCTTCTTCGAT+TGG | 0.457108 | 8.3:+24003061 | None:intergenic |
| AACGAAGCTTGAAGAATTGA+AGG | 0.472041 | 8.3:-24002684 | MS.gene90517:CDS |
| CTTCATGACAATCTCATCAA+AGG | 0.474595 | 8.3:-24002989 | MS.gene90517:CDS |
| GGTGTATGAGGGTGTTCCTA+TGG | 0.476105 | 8.3:-24006096 | MS.gene90517:CDS |
| CTGTTACATGCTACAACATC+AGG | 0.478138 | 8.3:+24003298 | None:intergenic |
| GACTGCCCTGTATATTGCTT+AGG | 0.485313 | 8.3:+24003193 | None:intergenic |
| CACAATCACAAAAGTTTGCA+AGG | 0.496554 | 8.3:-24005201 | MS.gene90517:intron |
| ACCGTGTTGTTCAGTTCTAT+AGG | 0.503974 | 8.3:+24002736 | None:intergenic |
| TTTCCACGAAATGATGATCA+TGG | 0.525235 | 8.3:-24006146 | MS.gene90517:CDS |
| AGCAAGGACTTCACAAAACT+AGG | 0.525979 | 8.3:+24004987 | None:intergenic |
| AAATACATTGCATGTAAGAC+AGG | 0.526557 | 8.3:-24004574 | MS.gene90517:CDS |
| TAGGGTTACCCTAAATTTGG+TGG | 0.526651 | 8.3:+24004471 | None:intergenic |
| AGGGTTACCCTAAATTTGGT+GGG | 0.531697 | 8.3:+24004472 | None:intergenic |
| TATGGGAGAGAGGTGTATGA+GGG | 0.546719 | 8.3:-24006107 | MS.gene90517:CDS |
| AGCTTTGTCAGAAATATTCG+AGG | 0.558647 | 8.3:-24003152 | MS.gene90517:CDS |
| ATTAATGTCGAAAATGGTGG+CGG | 0.572487 | 8.3:-24006216 | None:intergenic |
| GCAAGGACTTCACAAAACTA+GGG | 0.574234 | 8.3:+24004988 | None:intergenic |
| TTAATTAATGTCGAAAATGG+TGG | 0.576665 | 8.3:-24006219 | None:intergenic |
| TCAGCTGTGATTCACGCTGA+AGG | 0.576667 | 8.3:-24005038 | MS.gene90517:CDS |
| AGAGGATGAAATAAAGAACA+TGG | 0.576688 | 8.3:-24002708 | MS.gene90517:CDS |
| TCAGAATCATAGTTGATGGA+AGG | 0.576785 | 8.3:-24003084 | MS.gene90517:CDS |
| GTATAAACAAAACAAGGCGG+TGG | 0.581891 | 8.3:-24005810 | MS.gene90517:CDS |
| TGGCGGTTGATGAAAAGAAG+AGG | 0.598421 | 8.3:-24006199 | MS.gene90517:CDS |
| ACTCCATGATCATCATTTCG+TGG | 0.602909 | 8.3:+24006143 | None:intergenic |
| TGATTGCAGTTCAACTAAAG+GGG | 0.603602 | 8.3:-24005090 | MS.gene90517:intron |
| TTTGGAGAGAAATGTGCCAT+AGG | 0.605853 | 8.3:+24006080 | None:intergenic |
| TGAAAAGAAGAGGGATCGAA+TGG | 0.606536 | 8.3:-24006189 | MS.gene90517:CDS |
| GAAAATGATTGTATCAAACA+TGG | 0.606925 | 8.3:-24003224 | MS.gene90517:CDS |
| GCTTTGTCAGAAATATTCGA+GGG | 0.608274 | 8.3:-24003151 | MS.gene90517:CDS |
| TGAACAACACGGTCGAGTAG+AGG | 0.611549 | 8.3:-24002726 | MS.gene90517:CDS |
| ATTCTGGTTCCAAATGTGAT+CGG | 0.620705 | 8.3:+24005012 | None:intergenic |
| GATTGCAGTTCAACTAAAGG+GGG | 0.621159 | 8.3:-24005089 | MS.gene90517:intron |
| AGCTACATGTGATCTGAGCA+AGG | 0.622819 | 8.3:+24004971 | None:intergenic |
| GGCGGTTGATGAAAAGAAGA+GGG | 0.624988 | 8.3:-24006198 | MS.gene90517:CDS |
| TTAGGTTTATATAATAAGAG+CGG | 0.625618 | 8.3:-24003512 | MS.gene90517:intron |
| GCTGTGCATAAATTGCTAGA+AGG | 0.629013 | 8.3:-24004523 | MS.gene90517:CDS |
| AGACAGGATTGAGTGCTGGT+TGG | 0.629436 | 8.3:-24004558 | MS.gene90517:CDS |
| TGTAAGACAGGATTGAGTGC+TGG | 0.630499 | 8.3:-24004562 | MS.gene90517:CDS |
| TTTGCAGTATAAACAAAACA+AGG | 0.643541 | 8.3:-24005816 | MS.gene90517:intron |
| CATATATCTTCTAATCTCTG+AGG | 0.654771 | 8.3:+24002760 | None:intergenic |
| CAATTAGAAAATTCAACACG+CGG | 0.655244 | 8.3:+24002884 | None:intergenic |
| GAATTGAAGGAAGCTTGTAG+CGG | 0.658226 | 8.3:-24002671 | MS.gene90517:CDS |
| GGGAACATATTCTCGTGGCG+AGG | 0.659835 | 8.3:-24005069 | MS.gene90517:CDS |
| CTAAGCCTAAGCAATATACA+GGG | 0.663691 | 8.3:-24003198 | MS.gene90517:CDS |
| TAAATTGCTAGAAGGTGATG+TGG | 0.688108 | 8.3:-24004515 | MS.gene90517:CDS |
| GCCTATAGAACTGAACAACA+CGG | 0.716910 | 8.3:-24002737 | MS.gene90517:CDS |
| GCAGTATAAACAAAACAAGG+CGG | 0.774088 | 8.3:-24005813 | MS.gene90517:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAGAAAAAATATTGTT+TGG | + | chr8.3:24005073-24005092 | None:intergenic | 10.0% |
| !! | TTATATAAACCTAAAAAAAA+AGG | + | chr8.3:24005280-24005299 | None:intergenic | 10.0% |
| !!! | TTTAACTTTATTATATCAAT+CGG | - | chr8.3:24005088-24005107 | MS.gene90517:intron | 10.0% |
| !! | AAAAAAAATGTAAAATGGAT+TGG | + | chr8.3:24003320-24003339 | None:intergenic | 15.0% |
| !! | AAAAACTATTACCTTAAATT+TGG | + | chr8.3:24005194-24005213 | None:intergenic | 15.0% |
| !! | AAAACTATTACCTTAAATTT+GGG | + | chr8.3:24005193-24005212 | None:intergenic | 15.0% |
| !! | AAATTAAATCAAAGTCAAAA+TGG | - | chr8.3:24003527-24003546 | MS.gene90517:intron | 15.0% |
| !! | AATACAACAAATTAAAAGTA+TGG | + | chr8.3:24005369-24005388 | None:intergenic | 15.0% |
| !! | ACAATAATTTATACTAAACA+AGG | - | chr8.3:24003189-24003208 | MS.gene90517:CDS | 15.0% |
| !! | AGAATTTAACATTCAATTAA+TGG | + | chr8.3:24003503-24003522 | None:intergenic | 15.0% |
| !! | CATGTAAAAAAAATGTAAAA+TGG | + | chr8.3:24003325-24003344 | None:intergenic | 15.0% |
| !! | GAATTTAACATTCAATTAAT+GGG | + | chr8.3:24003502-24003521 | None:intergenic | 15.0% |
| !! | TTAGTTATATTCAAATTTAG+AGG | + | chr8.3:24003901-24003920 | None:intergenic | 15.0% |
| !!! | AAAAAAATGTAAAATGGATT+GGG | + | chr8.3:24003319-24003338 | None:intergenic | 15.0% |
| !!! | ATTTTAATTGTCATTTTATC+AGG | + | chr8.3:24003945-24003964 | None:intergenic | 15.0% |
| !!! | ATTTTTATTGATAATGTTTC+TGG | - | chr8.3:24002885-24002904 | MS.gene90517:CDS | 15.0% |
| !!! | GATAAATTGATTTTTTTTTC+TGG | + | chr8.3:24004660-24004679 | None:intergenic | 15.0% |
| !!! | TACTTACTTTAAAAATAAGT+TGG | + | chr8.3:24003657-24003676 | None:intergenic | 15.0% |
| !!! | TATTTGGTTTATCTTTTTTT+TGG | + | chr8.3:24004080-24004099 | None:intergenic | 15.0% |
| !!! | TCTTTTGTTAGTTTTAATTT+TGG | - | chr8.3:24005241-24005260 | MS.gene90517:intron | 15.0% |
| !!! | TGTAAATATTGAAAACATTT+TGG | - | chr8.3:24003366-24003385 | MS.gene90517:intron | 15.0% |
| !!! | TTTTTTACTTCAATTTTTCT+GGG | + | chr8.3:24004634-24004653 | None:intergenic | 15.0% |
| !!! | TTTTTTTACTTCAATTTTTC+TGG | + | chr8.3:24004635-24004654 | None:intergenic | 15.0% |
| !! | AAACTATTACCTTAAATTTG+GGG | + | chr8.3:24005192-24005211 | None:intergenic | 20.0% |
| !! | AAAGTTTAACAATTTGATAC+AGG | + | chr8.3:24004411-24004430 | None:intergenic | 20.0% |
| !! | AGATAGAAAACAACATTTAA+AGG | + | chr8.3:24002748-24002767 | None:intergenic | 20.0% |
| !! | AGTAAAGTAAATGAATAAAG+TGG | - | chr8.3:24004854-24004873 | MS.gene90517:intron | 20.0% |
| !! | ATAGTTGTTAACATAGAAAT+AGG | + | chr8.3:24004558-24004577 | None:intergenic | 20.0% |
| !! | CTATATAACTTTGTAAAATC+TGG | - | chr8.3:24004911-24004930 | MS.gene90517:intron | 20.0% |
| !! | TTAGGTTTATATAATAAGAG+CGG | - | chr8.3:24005286-24005305 | MS.gene90517:intron | 20.0% |
| !!! | AAAAAATGTAAAATGGATTG+GGG | + | chr8.3:24003318-24003337 | None:intergenic | 20.0% |
| !!! | AAAACAAGTAAGATTTTGAA+GGG | - | chr8.3:24003042-24003061 | MS.gene90517:CDS | 20.0% |
| !!! | ATACATTTTGTGAAAAAATG+AGG | + | chr8.3:24002786-24002805 | None:intergenic | 20.0% |
| !!! | ATCAAAATCAAGAAGTATAT+TGG | + | chr8.3:24004532-24004551 | None:intergenic | 20.0% |
| !!! | CAATCATTTTCTTTTTCTTT+TGG | + | chr8.3:24005565-24005584 | None:intergenic | 20.0% |
| !!! | TAATTTTAATAGCATTGTAG+CGG | + | chr8.3:24003162-24003181 | None:intergenic | 20.0% |
| !!! | TTGTGATTTCTTTTTGTATA+GGG | - | chr8.3:24004113-24004132 | MS.gene90517:intron | 20.0% |
| !!! | TTTTACATGTATTGAAACAT+TGG | - | chr8.3:24003336-24003355 | MS.gene90517:intron | 20.0% |
| ! | AACCAAACAATTAGATGAAA+GGG | + | chr8.3:24003421-24003440 | None:intergenic | 25.0% |
| ! | AACTATTACCTTAAATTTGG+GGG | + | chr8.3:24005191-24005210 | None:intergenic | 25.0% |
| ! | AATTTCAGAATCATAGTTGA+TGG | - | chr8.3:24005710-24005729 | MS.gene90517:intron | 25.0% |
| ! | ATAAAGAGAAATGTGTTTGA+TGG | - | chr8.3:24002849-24002868 | MS.gene90517:CDS | 25.0% |
| ! | ATCACATTAGAAGATGAATA+TGG | - | chr8.3:24004185-24004204 | MS.gene90517:intron | 25.0% |
| ! | CCTGAATTTAAAGAGTTAAA+AGG | - | chr8.3:24005680-24005699 | MS.gene90517:intron | 25.0% |
| ! | GAAAATGATTGTATCAAACA+TGG | - | chr8.3:24005574-24005593 | MS.gene90517:intron | 25.0% |
| ! | TAAAATGAAGCAACTGTATT+AGG | - | chr8.3:24003959-24003978 | MS.gene90517:intron | 25.0% |
| ! | TAAAGAGAAATGTGTTTGAT+GGG | - | chr8.3:24002850-24002869 | MS.gene90517:CDS | 25.0% |
| ! | TCTTAAAGCTGTATTATTCA+CGG | + | chr8.3:24004949-24004968 | None:intergenic | 25.0% |
| ! | TTTGCAGTATAAACAAAACA+AGG | - | chr8.3:24002982-24003001 | MS.gene90517:CDS | 25.0% |
| !! | AATATGCACCCTTTAAAAAA+TGG | + | chr8.3:24005161-24005180 | None:intergenic | 25.0% |
| !! | CAAAACAAGTAAGATTTTGA+AGG | - | chr8.3:24003041-24003060 | MS.gene90517:CDS | 25.0% |
| !! | CTTGTGATTTCTTTTTGTAT+AGG | - | chr8.3:24004112-24004131 | MS.gene90517:intron | 25.0% |
| !! | TGTGATTTCTTTTTGTATAG+GGG | - | chr8.3:24004114-24004133 | MS.gene90517:intron | 25.0% |
| !! | TTAACATATGCATTTTCTAC+AGG | - | chr8.3:24003559-24003578 | MS.gene90517:intron | 25.0% |
| !!! | CAAAATCTTACTTGTTTTGT+TGG | + | chr8.3:24003040-24003059 | None:intergenic | 25.0% |
| !!! | CCTTTTAACTCTTTAAATTC+AGG | + | chr8.3:24005683-24005702 | None:intergenic | 25.0% |
| !!! | GTTTAACGCTTTTTCTTTTT+GGG | + | chr8.3:24005526-24005545 | None:intergenic | 25.0% |
| !!! | TTACTCGTACCTTTTTTTTT+AGG | - | chr8.3:24005268-24005287 | MS.gene90517:intron | 25.0% |
| !!! | TTGGTTTATCTTTTTTTTGG+TGG | + | chr8.3:24004077-24004096 | None:intergenic | 25.0% |
| !!! | TTTTTAAAGGGTGCATATTA+GGG | - | chr8.3:24005162-24005181 | MS.gene90517:intron | 25.0% |
| !!! | TTTTTTAAAGGGTGCATATT+AGG | - | chr8.3:24005161-24005180 | MS.gene90517:intron | 25.0% |
| AAATACATTGCATGTAAGAC+AGG | - | chr8.3:24004224-24004243 | MS.gene90517:intron | 30.0% | |
| AACAAACTAGAAATGTGTGT+TGG | - | chr8.3:24004979-24004998 | MS.gene90517:CDS | 30.0% | |
| AATGGTGAAAAAAGATGTGA+TGG | - | chr8.3:24002627-24002646 | MS.gene90517:CDS | 30.0% | |
| AATTGAACCCACCAAATTTA+GGG | - | chr8.3:24004319-24004338 | MS.gene90517:intron | 30.0% | |
| ACAACATTTAAAGGAGACTT+TGG | + | chr8.3:24002739-24002758 | None:intergenic | 30.0% | |
| ACATGTTGTTCAATTAGATC+TGG | - | chr8.3:24004757-24004776 | MS.gene90517:intron | 30.0% | |
| AGAGGATGAAATAAAGAACA+TGG | - | chr8.3:24006090-24006109 | MS.gene90517:CDS | 30.0% | |
| CAAAAAGAAATCACAAGACA+TGG | + | chr8.3:24004109-24004128 | None:intergenic | 30.0% | |
| CAACCAAACAATTAGATGAA+AGG | + | chr8.3:24003422-24003441 | None:intergenic | 30.0% | |
| CAATTAGAAAATTCAACACG+CGG | + | chr8.3:24005917-24005936 | None:intergenic | 30.0% | |
| CATAATATATGCAAGGTCTA+GGG | - | chr8.3:24004037-24004056 | MS.gene90517:intron | 30.0% | |
| CATATATCTTCTAATCTCTG+AGG | + | chr8.3:24006041-24006060 | None:intergenic | 30.0% | |
| CATGGAAGGTTAAAATTATG+TGG | + | chr8.3:24003393-24003412 | None:intergenic | 30.0% | |
| CTCAGAGATTAGAAGATATA+TGG | - | chr8.3:24006039-24006058 | MS.gene90517:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr8.3:24004030-24004049 | MS.gene90517:intron | 30.0% | |
| GTGATAGTTGTATCTTTATC+AGG | + | chr8.3:24004170-24004189 | None:intergenic | 30.0% | |
| TAATTGAACCCACCAAATTT+AGG | - | chr8.3:24004318-24004337 | MS.gene90517:intron | 30.0% | |
| TGTCTATCATGAAATCATCA+AGG | - | chr8.3:24005391-24005410 | MS.gene90517:intron | 30.0% | |
| TTAAAAAGAGGTCCATGTTA+GGG | + | chr8.3:24004348-24004367 | None:intergenic | 30.0% | |
| TTGATTGCAGTTCAACTAAA+GGG | - | chr8.3:24003707-24003726 | MS.gene90517:intron | 30.0% | |
| TTTAAAAAGAGGTCCATGTT+AGG | + | chr8.3:24004349-24004368 | None:intergenic | 30.0% | |
| TTTGATTGCAGTTCAACTAA+AGG | - | chr8.3:24003706-24003725 | MS.gene90517:intron | 30.0% | |
| ! | AACATGGACCTCTTTTTAAA+GGG | - | chr8.3:24004349-24004368 | MS.gene90517:intron | 30.0% |
| ! | AATCAAGAAGTATATTGGAC+TGG | + | chr8.3:24004527-24004546 | None:intergenic | 30.0% |
| ! | GCGTGTTGAATTTTCTAATT+GGG | - | chr8.3:24005916-24005935 | MS.gene90517:intron | 30.0% |
| ! | TAACATGGACCTCTTTTTAA+AGG | - | chr8.3:24004348-24004367 | MS.gene90517:intron | 30.0% |
| ! | TTTACTTCAATTTTTCTGGG+AGG | + | chr8.3:24004631-24004650 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTCATGTTTTC+AGG | - | chr8.3:24005461-24005480 | MS.gene90517:intron | 30.0% |
| ! | TTTTTCTTTTGGATGTCTTG+TGG | + | chr8.3:24005554-24005573 | None:intergenic | 30.0% |
| !! | TTCCATCAAGCTTTAAAACT+TGG | - | chr8.3:24004827-24004846 | MS.gene90517:intron | 30.0% |
| !! | TTTGTTTTTCTTCTGACATC+GGG | + | chr8.3:24004791-24004810 | None:intergenic | 30.0% |
| !! | TTTTAAAGGGTGCATATTAG+GGG | - | chr8.3:24005163-24005182 | MS.gene90517:intron | 30.0% |
| !!! | ATGGTTGGACCATTTTTTAA+AGG | - | chr8.3:24005149-24005168 | MS.gene90517:intron | 30.0% |
| !!! | ATTGCTAGCTTTTGAACATT+TGG | - | chr8.3:24005946-24005965 | MS.gene90517:intron | 30.0% |
| !!! | CTTTGTTTTTCTTCTGACAT+CGG | + | chr8.3:24004792-24004811 | None:intergenic | 30.0% |
| !!! | GGTTTAACGCTTTTTCTTTT+TGG | + | chr8.3:24005527-24005546 | None:intergenic | 30.0% |
| !!! | GTTTATCTTTTTTTTGGTGG+TGG | + | chr8.3:24004074-24004093 | None:intergenic | 30.0% |
| !!! | TGGTTGGACCATTTTTTAAA+GGG | - | chr8.3:24005150-24005169 | MS.gene90517:intron | 30.0% |
| !!! | TTCCAAGTTTTAAAGCTTGA+TGG | + | chr8.3:24004832-24004851 | None:intergenic | 30.0% |
| !!! | TTGCTAGCTTTTGAACATTT+GGG | - | chr8.3:24005947-24005966 | MS.gene90517:intron | 30.0% |
| AAACTAGAAATGTGTGTTGG+AGG | - | chr8.3:24004982-24005001 | MS.gene90517:CDS | 35.0% | |
| AAAGAAATCACAAGACATGG+TGG | + | chr8.3:24004106-24004125 | None:intergenic | 35.0% | |
| AACGAAGCTTGAAGAATTGA+AGG | - | chr8.3:24006114-24006133 | MS.gene90517:CDS | 35.0% | |
| AATTTGATACAGGCAATAGC+CGG | + | chr8.3:24004401-24004420 | None:intergenic | 35.0% | |
| ACTAAGCCTAAGCAATATAC+AGG | - | chr8.3:24005599-24005618 | MS.gene90517:intron | 35.0% | |
| AGAAAGAAGTTGCTGCTAAT+TGG | - | chr8.3:24006209-24006228 | MS.gene90517:CDS | 35.0% | |
| AGATAGAGGCAGCAATAAAT+GGG | - | chr8.3:24005035-24005054 | MS.gene90517:CDS | 35.0% | |
| AGTTGCACCAAACAAAAAGT+GGG | - | chr8.3:24005326-24005345 | MS.gene90517:intron | 35.0% | |
| ATCACAAAAGTTTGCAAGGT+TGG | - | chr8.3:24003601-24003620 | MS.gene90517:intron | 35.0% | |
| ATCCAGATTGTGAATAACAG+AGG | - | chr8.3:24003111-24003130 | MS.gene90517:CDS | 35.0% | |
| CAAAAAGAAGCCAAACCTAT+AGG | + | chr8.3:24002920-24002939 | None:intergenic | 35.0% | |
| CACAATCACAAAAGTTTGCA+AGG | - | chr8.3:24003597-24003616 | MS.gene90517:intron | 35.0% | |
| CACCCTTTCATCTAATTGTT+TGG | - | chr8.3:24003416-24003435 | MS.gene90517:intron | 35.0% | |
| CTAAGCCTAAGCAATATACA+GGG | - | chr8.3:24005600-24005619 | MS.gene90517:intron | 35.0% | |
| CTTCATGACAATCTCATCAA+AGG | - | chr8.3:24005809-24005828 | MS.gene90517:CDS | 35.0% | |
| GCAGTATAAACAAAACAAGG+CGG | - | chr8.3:24002985-24003004 | MS.gene90517:CDS | 35.0% | |
| GCATAATATATGCAAGGTCT+AGG | - | chr8.3:24004036-24004055 | MS.gene90517:intron | 35.0% | |
| GCTTAAGATTCCTATAGGTT+TGG | - | chr8.3:24002907-24002926 | MS.gene90517:CDS | 35.0% | |
| GCTTTGTCAGAAATATTCGA+GGG | - | chr8.3:24005647-24005666 | MS.gene90517:intron | 35.0% | |
| GTTAGCATAGCTTATGAAAC+TGG | - | chr8.3:24006010-24006029 | MS.gene90517:intron | 35.0% | |
| GTTTCTTCCTGAAAACATGA+AGG | + | chr8.3:24005471-24005490 | None:intergenic | 35.0% | |
| TAAATTGCTAGAAGGTGATG+TGG | - | chr8.3:24004283-24004302 | MS.gene90517:intron | 35.0% | |
| TATCAATCGGTTACATTACC+TGG | - | chr8.3:24005101-24005120 | MS.gene90517:intron | 35.0% | |
| TGAGAGTTAGATAAATCCGT+CGG | + | chr8.3:24004717-24004736 | None:intergenic | 35.0% | |
| TGATTGCAGTTCAACTAAAG+GGG | - | chr8.3:24003708-24003727 | MS.gene90517:intron | 35.0% | |
| TGTTAGGGTTACCCTAAATT+TGG | + | chr8.3:24004333-24004352 | None:intergenic | 35.0% | |
| TGTTATTCTGCTCAACTTGT+CGG | - | chr8.3:24004441-24004460 | MS.gene90517:intron | 35.0% | |
| TTCACAAAACTAGGGAATTC+TGG | + | chr8.3:24003805-24003824 | None:intergenic | 35.0% | |
| TTTCCACGAAATGATGATCA+TGG | - | chr8.3:24002652-24002671 | MS.gene90517:CDS | 35.0% | |
| ! | AATTTAGGGTAACCCTAACA+TGG | - | chr8.3:24004333-24004352 | MS.gene90517:intron | 35.0% |
| ! | AGCTTTGTCAGAAATATTCG+AGG | - | chr8.3:24005646-24005665 | MS.gene90517:intron | 35.0% |
| ! | AGGCTTGTTTAAATCCCAAT+AGG | - | chr8.3:24003131-24003150 | MS.gene90517:CDS | 35.0% |
| ! | CGCGTGTTGAATTTTCTAAT+TGG | - | chr8.3:24005915-24005934 | MS.gene90517:intron | 35.0% |
| ! | GAGTGACTGTTGCATTTTAT+GGG | - | chr8.3:24002674-24002693 | MS.gene90517:CDS | 35.0% |
| ! | TAAGCTTGTAAAGCACTACA+AGG | + | chr8.3:24003477-24003496 | None:intergenic | 35.0% |
| ! | TGTCTTTTACAAAACGACAC+AGG | + | chr8.3:24004143-24004162 | None:intergenic | 35.0% |
| ! | TGTTTGGACCCTTTAAAAAG+AGG | + | chr8.3:24004360-24004379 | None:intergenic | 35.0% |
| ! | TTTAAAGGGTGCATATTAGG+GGG | - | chr8.3:24005164-24005183 | MS.gene90517:intron | 35.0% |
| !! | AAATGTAAAATGGATTGGGG+TGG | + | chr8.3:24003315-24003334 | None:intergenic | 35.0% |
| !! | AATGTAAAATGGATTGGGGT+GGG | + | chr8.3:24003314-24003333 | None:intergenic | 35.0% |
| !! | ATTCTGGTTCCAAATGTGAT+CGG | + | chr8.3:24003789-24003808 | None:intergenic | 35.0% |
| !! | ATTTGGTGGGTTCAATTAGT+TGG | + | chr8.3:24004316-24004335 | None:intergenic | 35.0% |
| !! | CACATGTAGCTAGTTGTTTT+TGG | - | chr8.3:24003839-24003858 | MS.gene90517:intron | 35.0% |
| !! | CTATAGGTTTGGCTTCTTTT+TGG | - | chr8.3:24002918-24002937 | MS.gene90517:CDS | 35.0% |
| !! | CTTTTTAAAGGGTCCAAACA+TGG | - | chr8.3:24004360-24004379 | MS.gene90517:intron | 35.0% |
| !! | TCAGAATCATAGTTGATGGA+AGG | - | chr8.3:24005714-24005733 | MS.gene90517:intron | 35.0% |
| !! | TTAGATGAAAGGGTGTTTCA+TGG | + | chr8.3:24003411-24003430 | None:intergenic | 35.0% |
| !! | TTCTGGCTTAAGATTCCTAT+AGG | - | chr8.3:24002902-24002921 | MS.gene90517:CDS | 35.0% |
| !!! | TGTAGCTAGTTGTTTTTGGA+TGG | - | chr8.3:24003843-24003862 | MS.gene90517:intron | 35.0% |
| AAGCTCACGAGGACATTATT+TGG | + | chr8.3:24003995-24004014 | None:intergenic | 40.0% | |
| AAGTTGAAGAGGTCCATGTT+TGG | + | chr8.3:24004376-24004395 | None:intergenic | 40.0% | |
| ACTCCATGATCATCATTTCG+TGG | + | chr8.3:24002658-24002677 | None:intergenic | 40.0% | |
| AGCAAGGACTTCACAAAACT+AGG | + | chr8.3:24003814-24003833 | None:intergenic | 40.0% | |
| AGCCTCTGTTATTCACAATC+TGG | + | chr8.3:24003116-24003135 | None:intergenic | 40.0% | |
| AGGGTTACCCTAAATTTGGT+GGG | + | chr8.3:24004329-24004348 | None:intergenic | 40.0% | |
| AGGTTGAACTAAGAGGTCTA+TGG | - | chr8.3:24005130-24005149 | MS.gene90517:intron | 40.0% | |
| ATGACAAACGACCATGGAAT+TGG | - | chr8.3:24005006-24005025 | MS.gene90517:CDS | 40.0% | |
| ATGGACCTCTTCAACTTAAC+CGG | - | chr8.3:24004379-24004398 | MS.gene90517:intron | 40.0% | |
| CAACCAGTGTTGTCAACTAT+CGG | + | chr8.3:24003279-24003298 | None:intergenic | 40.0% | |
| CTGTTACATGCTACAACATC+AGG | + | chr8.3:24005503-24005522 | None:intergenic | 40.0% | |
| GAATTGAAGGAAGCTTGTAG+CGG | - | chr8.3:24006127-24006146 | MS.gene90517:CDS | 40.0% | |
| GAGATAGAGGCAGCAATAAA+TGG | - | chr8.3:24005034-24005053 | MS.gene90517:CDS | 40.0% | |
| GAGTTGCACCAAACAAAAAG+TGG | - | chr8.3:24005325-24005344 | MS.gene90517:intron | 40.0% | |
| GATTGCAGTTCAACTAAAGG+GGG | - | chr8.3:24003709-24003728 | MS.gene90517:intron | 40.0% | |
| GCAAGGACTTCACAAAACTA+GGG | + | chr8.3:24003813-24003832 | None:intergenic | 40.0% | |
| GCCTATAGAACTGAACAACA+CGG | - | chr8.3:24006061-24006080 | MS.gene90517:intron | 40.0% | |
| GCTGTGCATAAATTGCTAGA+AGG | - | chr8.3:24004275-24004294 | MS.gene90517:intron | 40.0% | |
| GTAGAGAGTTCTTCTTCGAT+TGG | + | chr8.3:24005740-24005759 | None:intergenic | 40.0% | |
| GTATAAACAAAACAAGGCGG+TGG | - | chr8.3:24002988-24003007 | MS.gene90517:CDS | 40.0% | |
| TAGGGTTACCCTAAATTTGG+TGG | + | chr8.3:24004330-24004349 | None:intergenic | 40.0% | |
| TATCTCCAAGTCCAATTCCA+TGG | + | chr8.3:24005020-24005039 | None:intergenic | 40.0% | |
| TGAAAAGAAGAGGGATCGAA+TGG | - | chr8.3:24002609-24002628 | MS.gene90517:CDS | 40.0% | |
| TGAACTAAGAGGTCTATGGT+TGG | - | chr8.3:24005134-24005153 | MS.gene90517:intron | 40.0% | |
| TTTGGAGAGAAATGTGCCAT+AGG | + | chr8.3:24002721-24002740 | None:intergenic | 40.0% | |
| ! | AAAGTGGAAACAGTGCTACT+TGG | - | chr8.3:24004870-24004889 | MS.gene90517:intron | 40.0% |
| ! | ACCGTGTTGTTCAGTTCTAT+AGG | + | chr8.3:24006065-24006084 | None:intergenic | 40.0% |
| ! | ATTGTAGCGGAGTAACCTAT+TGG | + | chr8.3:24003149-24003168 | None:intergenic | 40.0% |
| ! | GGAGTGACTGTTGCATTTTA+TGG | - | chr8.3:24002673-24002692 | MS.gene90517:CDS | 40.0% |
| ! | TGTTGCATTTTATGGGAGAG+AGG | - | chr8.3:24002681-24002700 | MS.gene90517:CDS | 40.0% |
| ! | TTGTAGCGGAGTAACCTATT+GGG | + | chr8.3:24003148-24003167 | None:intergenic | 40.0% |
| ! | TTTTGGATGTCTTGTGGAAC+AGG | + | chr8.3:24005548-24005567 | None:intergenic | 40.0% |
| !! | AATAGCCGGTTAAGTTGAAG+AGG | + | chr8.3:24004387-24004406 | None:intergenic | 40.0% |
| !! | ATGAAAGGGTGTTTCATGGA+AGG | + | chr8.3:24003407-24003426 | None:intergenic | 40.0% |
| !! | CAAGACATGGTGGTGTTATT+TGG | + | chr8.3:24004096-24004115 | None:intergenic | 40.0% |
| !! | CTTCAATTTTTCTGGGAGGT+CGG | + | chr8.3:24004627-24004646 | None:intergenic | 40.0% |
| !! | TTTTAAGAGTTCGATTGCGC+AGG | - | chr8.3:24005984-24006003 | MS.gene90517:intron | 40.0% |
| !!! | ATCTTTTTTTTGGTGGTGGC+CGG | + | chr8.3:24004070-24004089 | None:intergenic | 40.0% |
| AAAGGGGGAACATATTCTCG+TGG | - | chr8.3:24003724-24003743 | MS.gene90517:intron | 45.0% | |
| AAATCCGTCGGTGATCGAAA+CGG | + | chr8.3:24004705-24004724 | None:intergenic | 45.0% | |
| AACGACCATGGAATTGGACT+TGG | - | chr8.3:24005012-24005031 | MS.gene90517:CDS | 45.0% | |
| AGCTACATGTGATCTGAGCA+AGG | + | chr8.3:24003830-24003849 | None:intergenic | 45.0% | |
| ATTACCGTTTCGATCACCGA+CGG | - | chr8.3:24004698-24004717 | MS.gene90517:intron | 45.0% | |
| GACTGCCCTGTATATTGCTT+AGG | + | chr8.3:24005608-24005627 | None:intergenic | 45.0% | |
| GGAATTGGACTTGGAGATAG+AGG | - | chr8.3:24005021-24005040 | MS.gene90517:CDS | 45.0% | |
| TAGCCGATAGTTGACAACAC+TGG | - | chr8.3:24003273-24003292 | MS.gene90517:CDS | 45.0% | |
| TGAAGGACTCCGATCACATT+TGG | - | chr8.3:24003777-24003796 | MS.gene90517:intron | 45.0% | |
| TGCACCAAACAAAAAGTGGG+AGG | - | chr8.3:24005329-24005348 | MS.gene90517:intron | 45.0% | |
| TGTAAGACAGGATTGAGTGC+TGG | - | chr8.3:24004236-24004255 | MS.gene90517:intron | 45.0% | |
| TTGCATTACAAGCTGACTGC+TGG | - | chr8.3:24005833-24005852 | MS.gene90517:intron | 45.0% | |
| ! | GCTTGTAAAGCACTACAAGG+TGG | + | chr8.3:24003474-24003493 | None:intergenic | 45.0% |
| ! | TAATGGACGACGATGGATAC+GGG | + | chr8.3:24004682-24004701 | None:intergenic | 45.0% |
| ! | TATGGGAGAGAGGTGTATGA+GGG | - | chr8.3:24002691-24002710 | MS.gene90517:CDS | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr8.3:24004008-24004027 | MS.gene90517:intron | 45.0% |
| ! | TTATGGGAGAGAGGTGTATG+AGG | - | chr8.3:24002690-24002709 | MS.gene90517:CDS | 45.0% |
| !! | GGAAACAGTGCTACTTGGTA+AGG | - | chr8.3:24004875-24004894 | MS.gene90517:intron | 45.0% |
| !! | GGCGGTTGATGAAAAGAAGA+GGG | - | chr8.3:24002600-24002619 | MS.gene90517:CDS | 45.0% |
| !! | GTAATGGACGACGATGGATA+CGG | + | chr8.3:24004683-24004702 | None:intergenic | 45.0% |
| !! | TGGCGGTTGATGAAAAGAAG+AGG | - | chr8.3:24002599-24002618 | MS.gene90517:CDS | 45.0% |
| !!! | CTTGCCTCCCACTTTTTGTT+TGG | + | chr8.3:24005336-24005355 | None:intergenic | 45.0% |
| !!! | TCTTTTTTTTGGTGGTGGCC+GGG | + | chr8.3:24004069-24004088 | None:intergenic | 45.0% |
| GGAGGAATGACAAACGACCA+TGG | - | chr8.3:24005000-24005019 | MS.gene90517:CDS | 50.0% | |
| GTCGGTGATCGAAACGGTAA+TGG | + | chr8.3:24004699-24004718 | None:intergenic | 50.0% | |
| GTTACATTACCTGGTGCAGC+AGG | - | chr8.3:24005110-24005129 | MS.gene90517:intron | 50.0% | |
| TAGGGGGACCCCCAAATTTA+AGG | - | chr8.3:24005180-24005199 | MS.gene90517:intron | 50.0% | |
| TCAGCTGTGATTCACGCTGA+AGG | - | chr8.3:24003760-24003779 | MS.gene90517:intron | 50.0% | |
| TGAACAACACGGTCGAGTAG+AGG | - | chr8.3:24006072-24006091 | MS.gene90517:CDS | 50.0% | |
| TTAGTTCAACCTGCTGCACC+AGG | + | chr8.3:24005122-24005141 | None:intergenic | 50.0% | |
| ! | CAAGGTCTAGGGTTCAAACC+CGG | - | chr8.3:24004048-24004067 | MS.gene90517:intron | 50.0% |
| ! | GTGCAGCAGGTTGAACTAAG+AGG | - | chr8.3:24005123-24005142 | MS.gene90517:intron | 50.0% |
| !! | AGACAGGATTGAGTGCTGGT+TGG | - | chr8.3:24004240-24004259 | MS.gene90517:intron | 50.0% |
| !! | GAAACGGTAATGGACGACGA+TGG | + | chr8.3:24004689-24004708 | None:intergenic | 50.0% |
| !! | GGTGTATGAGGGTGTTCCTA+TGG | - | chr8.3:24002702-24002721 | MS.gene90517:CDS | 50.0% |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr8.3:24004006-24004025 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr8.3:24004003-24004022 | MS.gene90517:intron | 55.0% | |
| GGGAACATATTCTCGTGGCG+AGG | - | chr8.3:24003729-24003748 | MS.gene90517:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 24002586 | 24006234 | 24002586 | ID=MS.gene90517 |
| chr8.3 | mRNA | 24002586 | 24006234 | 24002586 | ID=MS.gene90517.t1;Parent=MS.gene90517 |
| chr8.3 | exon | 24006067 | 24006234 | 24006067 | ID=MS.gene90517.t1.exon1;Parent=MS.gene90517.t1 |
| chr8.3 | CDS | 24006067 | 24006234 | 24006067 | ID=cds.MS.gene90517.t1;Parent=MS.gene90517.t1 |
| chr8.3 | exon | 24005772 | 24005831 | 24005772 | ID=MS.gene90517.t1.exon2;Parent=MS.gene90517.t1 |
| chr8.3 | CDS | 24005772 | 24005831 | 24005772 | ID=cds.MS.gene90517.t1;Parent=MS.gene90517.t1 |
| chr8.3 | exon | 24005202 | 24005239 | 24005202 | ID=MS.gene90517.t1.exon3;Parent=MS.gene90517.t1 |
| chr8.3 | CDS | 24005202 | 24005239 | 24005202 | ID=cds.MS.gene90517.t1;Parent=MS.gene90517.t1 |
| chr8.3 | exon | 24004956 | 24005103 | 24004956 | ID=MS.gene90517.t1.exon4;Parent=MS.gene90517.t1 |
| chr8.3 | CDS | 24004956 | 24005103 | 24004956 | ID=cds.MS.gene90517.t1;Parent=MS.gene90517.t1 |
| chr8.3 | exon | 24004480 | 24004686 | 24004480 | ID=MS.gene90517.t1.exon5;Parent=MS.gene90517.t1 |
| chr8.3 | CDS | 24004480 | 24004686 | 24004480 | ID=cds.MS.gene90517.t1;Parent=MS.gene90517.t1 |
| chr8.3 | exon | 24003470 | 24003530 | 24003470 | ID=MS.gene90517.t1.exon6;Parent=MS.gene90517.t1 |
| chr8.3 | CDS | 24003470 | 24003530 | 24003470 | ID=cds.MS.gene90517.t1;Parent=MS.gene90517.t1 |
| chr8.3 | exon | 24002586 | 24003337 | 24002586 | ID=MS.gene90517.t1.exon7;Parent=MS.gene90517.t1 |
| chr8.3 | CDS | 24002586 | 24003337 | 24002586 | ID=cds.MS.gene90517.t1;Parent=MS.gene90517.t1 |
| Gene Sequence |
| Protein sequence |
