Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90619.t1 | XP_003616838.2 | 93.7 | 587 | 37 | 0 | 1 | 587 | 33 | 619 | 2.4e-310 | 1073.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90619.t1 | Q9M219 | 26.1 | 524 | 370 | 8 | 75 | 585 | 36 | 555 | 2.5e-48 | 194.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90619.t1 | G7K7G6 | 93.7 | 587 | 37 | 0 | 1 | 587 | 1 | 587 | 1.7e-310 | 1073.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene90619.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90619.t1 | MTR_5g084810 | 95.741 | 587 | 25 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1144 |
| MS.gene90619.t1 | MTR_7g093000 | 35.315 | 555 | 344 | 6 | 34 | 579 | 15 | 563 | 1.10e-105 | 330 |
| MS.gene90619.t1 | MTR_8g005155 | 26.422 | 545 | 374 | 11 | 48 | 575 | 18 | 552 | 1.78e-53 | 191 |
| MS.gene90619.t1 | MTR_7g080620 | 24.909 | 550 | 386 | 11 | 46 | 575 | 30 | 572 | 2.89e-44 | 168 |
| MS.gene90619.t1 | MTR_8g080990 | 20.690 | 319 | 233 | 7 | 256 | 571 | 62 | 363 | 1.47e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90619.t1 | AT4G19650 | 46.899 | 516 | 272 | 2 | 68 | 583 | 79 | 592 | 2.47e-169 | 494 |
| MS.gene90619.t1 | AT4G19650 | 44.788 | 518 | 282 | 3 | 68 | 583 | 60 | 575 | 6.81e-156 | 459 |
| MS.gene90619.t1 | AT5G45113 | 43.062 | 418 | 232 | 2 | 168 | 583 | 1 | 414 | 1.83e-114 | 347 |
| MS.gene90619.t1 | AT5G06810 | 34.595 | 555 | 359 | 3 | 29 | 581 | 29 | 581 | 1.35e-104 | 327 |
| MS.gene90619.t1 | AT5G06811 | 34.568 | 567 | 351 | 6 | 22 | 581 | 24 | 577 | 2.09e-99 | 314 |
| MS.gene90619.t1 | AT3G60400 | 26.118 | 559 | 386 | 12 | 42 | 585 | 9 | 555 | 2.25e-52 | 188 |
| MS.gene90619.t1 | AT5G45115 | 47.692 | 65 | 34 | 0 | 57 | 121 | 58 | 122 | 3.58e-11 | 61.2 |
| MS.gene90619.t1 | AT5G45115 | 47.692 | 65 | 34 | 0 | 57 | 121 | 58 | 122 | 3.58e-11 | 61.2 |
| MS.gene90619.t1 | AT1G74120 | 25.311 | 241 | 151 | 6 | 347 | 579 | 186 | 405 | 8.41e-11 | 64.7 |
Find 95 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAGAAAGAGCGGGAATT+TGG | 0.207920 | 5.4:+66998567 | None:intergenic |
| TTGAGCAAACATTCGATAAA+AGG | 0.208563 | 5.4:-66997627 | MS.gene90619:CDS |
| TTGTGACCCGCTTATTAAAT+TGG | 0.211062 | 5.4:-66997475 | MS.gene90619:CDS |
| AAAAGGTTCAAATTCGTTAA+TGG | 0.216359 | 5.4:+66998340 | None:intergenic |
| ATTTCAAGATTATGAAGATT+TGG | 0.259240 | 5.4:-66998120 | MS.gene90619:CDS |
| CTTGCTGAAACTAGGGTATA+TGG | 0.266036 | 5.4:-66997439 | MS.gene90619:CDS |
| TTTGAATTACATTTCTCTTC+AGG | 0.267697 | 5.4:+66997271 | None:intergenic |
| GAATTGGGATTGAGAGTAAA+TGG | 0.269440 | 5.4:-66997995 | MS.gene90619:CDS |
| ATTCTGCATAAATCAGCTTT+TGG | 0.277612 | 5.4:+66997573 | None:intergenic |
| CTTGATTGGTTGAAAAGAAT+TGG | 0.282428 | 5.4:-66998011 | MS.gene90619:CDS |
| CTCTTCAGGATTAGAATCTT+AGG | 0.284996 | 5.4:+66997285 | None:intergenic |
| TGCCAGATTGTTGGACCTTC+AGG | 0.287973 | 5.4:+66997033 | None:intergenic |
| TTTCAAGATTATGAAGATTT+GGG | 0.302755 | 5.4:-66998119 | MS.gene90619:CDS |
| TCCATTGGAGCTTATTAGTT+TGG | 0.304432 | 5.4:-66997538 | MS.gene90619:CDS |
| AAAGGTTCAAATTCGTTAAT+GGG | 0.316048 | 5.4:+66998341 | None:intergenic |
| GTGGCGCGTTTGATGTAAAT+TGG | 0.317940 | 5.4:+66998545 | None:intergenic |
| AGGAATTAATCACACGGAAT+TGG | 0.320142 | 5.4:-66998306 | MS.gene90619:CDS |
| AGGAAGCTGTTCTTGTTTCT+AGG | 0.327574 | 5.4:-66997825 | MS.gene90619:CDS |
| ATCGTCAGGGATGTTGATTT+TGG | 0.327979 | 5.4:+66998406 | None:intergenic |
| TGTTTGTTGTCCTTTGCTTT+TGG | 0.333098 | 5.4:-66998066 | MS.gene90619:CDS |
| TGGAGAAAGAGCGGGAATTT+GGG | 0.341540 | 5.4:+66998568 | None:intergenic |
| AGAGCGGTTTGTAAGGAGTT+AGG | 0.349298 | 5.4:-66997600 | MS.gene90619:CDS |
| AGTTTGTTGTTGTTCTTGAT+TGG | 0.351137 | 5.4:-66998025 | MS.gene90619:CDS |
| TTTAATAAGCGGGTCACAAT+AGG | 0.351904 | 5.4:+66997479 | None:intergenic |
| TTTCATGTATTGTGTTATCA+TGG | 0.353729 | 5.4:-66998224 | MS.gene90619:CDS |
| AGGGAGAGGTGATCAGTTAC+AGG | 0.358936 | 5.4:-66997376 | MS.gene90619:CDS |
| TTGATTGGTTGAAAAGAATT+GGG | 0.361761 | 5.4:-66998010 | MS.gene90619:CDS |
| CAAAGAAAATAACAACCTTT+AGG | 0.370775 | 5.4:+66998272 | None:intergenic |
| TATCTCACAAGACATTCTAT+TGG | 0.371889 | 5.4:+66997213 | None:intergenic |
| AAATGGAAGAAGATGGGTTT+TGG | 0.374297 | 5.4:+66998627 | None:intergenic |
| GAAGCAGTAAAATTGTTTCC+AGG | 0.374900 | 5.4:-66997396 | MS.gene90619:CDS |
| CTGCCTCGTAGAAGCTGGTT+TGG | 0.378167 | 5.4:-66997343 | MS.gene90619:CDS |
| GGTGCAAGAAATTGGGGTTT+TGG | 0.381606 | 5.4:+66998648 | None:intergenic |
| TTTATACGTTGCCAGATTGT+TGG | 0.388911 | 5.4:+66997024 | None:intergenic |
| TTGAAAGAAATGGAAGAAGA+TGG | 0.405404 | 5.4:+66998620 | None:intergenic |
| TGGGTATGGAAATGGAGTTT+TGG | 0.409236 | 5.4:-66998150 | MS.gene90619:CDS |
| ATCCTGAAGGTCCAACAATC+TGG | 0.424676 | 5.4:-66997035 | MS.gene90619:CDS |
| TCTAGGTCGGTTTATTAAGT+CGG | 0.428427 | 5.4:-66997808 | MS.gene90619:CDS |
| ATCTCACAAGACATTCTATT+GGG | 0.431195 | 5.4:+66997214 | None:intergenic |
| AGGTTATAGAGCGGTTTGTA+AGG | 0.431374 | 5.4:-66997607 | MS.gene90619:CDS |
| CGGCTTTCTTGCTGAAACTA+GGG | 0.439594 | 5.4:-66997446 | MS.gene90619:CDS |
| GCTTATTAAATTGGAGAAAA+CGG | 0.440222 | 5.4:-66997466 | MS.gene90619:CDS |
| CTAGGTCGGTTTATTAAGTC+GGG | 0.441636 | 5.4:-66997807 | MS.gene90619:CDS |
| TGATCAGTTACAGGAGAGAT+TGG | 0.453405 | 5.4:-66997367 | MS.gene90619:CDS |
| TTCATGTATTGTGTTATCAT+GGG | 0.455291 | 5.4:-66998223 | MS.gene90619:CDS |
| AGACCTTCCAACAACAAATT+CGG | 0.457193 | 5.4:+66997852 | None:intergenic |
| TGAAAGAAATGGAAGAAGAT+GGG | 0.458028 | 5.4:+66998621 | None:intergenic |
| ACACTTACTCGACAATATAT+CGG | 0.459640 | 5.4:+66997743 | None:intergenic |
| CATATGTATGATTTGTTCAA+GGG | 0.474363 | 5.4:-66997879 | MS.gene90619:CDS |
| ACGGCTTTCTTGCTGAAACT+AGG | 0.474798 | 5.4:-66997447 | MS.gene90619:CDS |
| ATCTTCGCCATTCGATTCCT+CGG | 0.482527 | 5.4:+66998197 | None:intergenic |
| TTCAATGTATGAGTGGTTGA+AGG | 0.494343 | 5.4:-66997145 | MS.gene90619:CDS |
| ACATATGTATGATTTGTTCA+AGG | 0.498470 | 5.4:-66997880 | MS.gene90619:CDS |
| GATCCGAATTTGTTGTTGGA+AGG | 0.498949 | 5.4:-66997855 | MS.gene90619:CDS |
| TTAGGGTTGAAGAGAAAGAA+TGG | 0.499067 | 5.4:+66998701 | None:intergenic |
| AGCTGTTCTTGTTTCTAGGT+CGG | 0.500050 | 5.4:-66997821 | MS.gene90619:CDS |
| TTGGACTGCCTCGTAGAAGC+TGG | 0.500999 | 5.4:-66997348 | MS.gene90619:CDS |
| CTTCTAAACAGAAACATAAG+AGG | 0.503889 | 5.4:-66997515 | MS.gene90619:CDS |
| CTAGTTCTAGCACTTATAGC+TGG | 0.504313 | 5.4:-66997956 | MS.gene90619:CDS |
| TGTATGAGTGGTTGAAGGAA+AGG | 0.504426 | 5.4:-66997140 | MS.gene90619:CDS |
| ATTTGTTGTTGGAAGGTCTA+GGG | 0.509859 | 5.4:-66997848 | MS.gene90619:CDS |
| TATGGAAAACTCTGAGGAGA+TGG | 0.511741 | 5.4:-66997421 | MS.gene90619:CDS |
| AATTTGTTGTTGGAAGGTCT+AGG | 0.516290 | 5.4:-66997849 | MS.gene90619:CDS |
| GTAAAATTGTTTCCAGGGAG+AGG | 0.518160 | 5.4:-66997390 | MS.gene90619:CDS |
| AATCATAAATGATGATCCAT+TGG | 0.526253 | 5.4:-66997553 | MS.gene90619:CDS |
| GTAAATTGGTGGAGAAAGAG+CGG | 0.528173 | 5.4:+66998559 | None:intergenic |
| TCATGTATTGTGTTATCATG+GGG | 0.535058 | 5.4:-66998222 | MS.gene90619:CDS |
| TAGGGTTGAAGAGAAAGAAT+GGG | 0.541091 | 5.4:+66998702 | None:intergenic |
| AAGCAGTAAAATTGTTTCCA+GGG | 0.543083 | 5.4:-66997395 | MS.gene90619:CDS |
| ATGAGGAAATTGATGAAATG+TGG | 0.545861 | 5.4:+66998431 | None:intergenic |
| GCCAAACTAATAAGCTCCAA+TGG | 0.546201 | 5.4:+66997537 | None:intergenic |
| ATATGAAACTATGGTACTCA+AGG | 0.555816 | 5.4:+66997095 | None:intergenic |
| AGAAAGAGCGGGAATTTGGG+TGG | 0.556121 | 5.4:+66998571 | None:intergenic |
| TTGTAGCACTGCGATTAGAA+TGG | 0.562098 | 5.4:-66997319 | MS.gene90619:CDS |
| TGTAACTGATCACCTCTCCC+TGG | 0.577413 | 5.4:+66997378 | None:intergenic |
| TAAATTGGTGGAGAAAGAGC+GGG | 0.577774 | 5.4:+66998560 | None:intergenic |
| CAGAAACATAAGAGGAGTGG+AGG | 0.579021 | 5.4:-66997507 | MS.gene90619:CDS |
| TGTGTTATCATGGGGTTCCG+AGG | 0.589302 | 5.4:-66998214 | MS.gene90619:CDS |
| GAAAGTGAAAGAGTTCCCAT+TGG | 0.599604 | 5.4:+66998740 | None:intergenic |
| AAACAGAAACATAAGAGGAG+TGG | 0.607869 | 5.4:-66997510 | MS.gene90619:CDS |
| TGTTGTTGGAAGGTCTAGGG+AGG | 0.611420 | 5.4:-66997845 | MS.gene90619:CDS |
| GCGCGTTTGATGTAAATTGG+TGG | 0.612365 | 5.4:+66998548 | None:intergenic |
| TTCGATAAAAGGTTATAGAG+CGG | 0.623688 | 5.4:-66997616 | MS.gene90619:CDS |
| TGGGGTTCCGAGGAATCGAA+TGG | 0.633090 | 5.4:-66998204 | MS.gene90619:CDS |
| AGAAACATAAGAGGAGTGGA+GGG | 0.636056 | 5.4:-66997506 | MS.gene90619:CDS |
| ATATGTATGATTTGTTCAAG+GGG | 0.636636 | 5.4:-66997878 | MS.gene90619:CDS |
| ACATCACCAACCAAAAGCAA+AGG | 0.637648 | 5.4:+66998056 | None:intergenic |
| CAAGAGTTTCAATGTATGAG+TGG | 0.645039 | 5.4:-66997152 | MS.gene90619:CDS |
| AAAATCAACATCCCTGACGA+TGG | 0.646277 | 5.4:-66998404 | MS.gene90619:CDS |
| TATATTGTCGAGTAAGTGTG+TGG | 0.647992 | 5.4:-66997739 | MS.gene90619:CDS |
| TTTGTGAATATGCATCCTGA+AGG | 0.654931 | 5.4:-66997048 | MS.gene90619:CDS |
| AGGGTATATGGAAAACTCTG+AGG | 0.686033 | 5.4:-66997427 | MS.gene90619:CDS |
| TATGTATGATTTGTTCAAGG+GGG | 0.703088 | 5.4:-66997877 | MS.gene90619:CDS |
| GAGTTTAGGAATTAATCACA+CGG | 0.713083 | 5.4:-66998312 | MS.gene90619:CDS |
| AATCCAAACCAGCTTCTACG+AGG | 0.736492 | 5.4:+66997340 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTGTATAATATTCGAA+TGG | - | chr5.4:66998039-66998058 | MS.gene90619:CDS | 15.0% |
| !! | ATTTCAAGATTATGAAGATT+TGG | - | chr5.4:66997613-66997632 | MS.gene90619:CDS | 20.0% |
| !! | GATTTCTTAAAAAACACTTT+AGG | - | chr5.4:66998493-66998512 | MS.gene90619:CDS | 20.0% |
| !! | TAGTTTCATATGATGAAAAA+CGG | - | chr5.4:66998650-66998669 | MS.gene90619:CDS | 20.0% |
| !! | TTTCAAGATTATGAAGATTT+GGG | - | chr5.4:66997614-66997633 | MS.gene90619:CDS | 20.0% |
| !!! | TTTTTCATCATATGAAACTA+TGG | + | chr5.4:66998650-66998669 | None:intergenic | 20.0% |
| ! | AAAAGGTTCAAATTCGTTAA+TGG | + | chr5.4:66997396-66997415 | None:intergenic | 25.0% |
| ! | AAAGGTTCAAATTCGTTAAT+GGG | + | chr5.4:66997395-66997414 | None:intergenic | 25.0% |
| ! | AATCATAAATGATGATCCAT+TGG | - | chr5.4:66998180-66998199 | MS.gene90619:CDS | 25.0% |
| ! | CAAAGAAAATAACAACCTTT+AGG | + | chr5.4:66997464-66997483 | None:intergenic | 25.0% |
| ! | GCTTATTAAATTGGAGAAAA+CGG | - | chr5.4:66998267-66998286 | MS.gene90619:CDS | 25.0% |
| ! | TTCATGTATTGTGTTATCAT+GGG | - | chr5.4:66997510-66997529 | MS.gene90619:CDS | 25.0% |
| ! | TTGGAAAAATTTCTACCTAA+AGG | - | chr5.4:66997446-66997465 | MS.gene90619:CDS | 25.0% |
| ! | TTTCATGTATTGTGTTATCA+TGG | - | chr5.4:66997509-66997528 | MS.gene90619:CDS | 25.0% |
| ! | TTTGAATTACATTTCTCTTC+AGG | + | chr5.4:66998465-66998484 | None:intergenic | 25.0% |
| !! | ATTCCTAAACTCTCTAAAAA+AGG | + | chr5.4:66997413-66997432 | None:intergenic | 25.0% |
| !! | GTTTTCTCCAATTTAATAAG+CGG | + | chr5.4:66998268-66998287 | None:intergenic | 25.0% |
| !! | TTGATTGGTTGAAAAGAATT+GGG | - | chr5.4:66997723-66997742 | MS.gene90619:CDS | 25.0% |
| !! | TTTTCTCCAATTTAATAAGC+GGG | + | chr5.4:66998267-66998286 | None:intergenic | 25.0% |
| !!! | ACATATGTATGATTTGTTCA+AGG | - | chr5.4:66997853-66997872 | MS.gene90619:CDS | 25.0% |
| !!! | ATATGTATGATTTGTTCAAG+GGG | - | chr5.4:66997855-66997874 | MS.gene90619:CDS | 25.0% |
| !!! | CATATGTATGATTTGTTCAA+GGG | - | chr5.4:66997854-66997873 | MS.gene90619:CDS | 25.0% |
| !!! | GGTTGAATTTTTGAAAGAAA+TGG | + | chr5.4:66997126-66997145 | None:intergenic | 25.0% |
| !!! | TTAGAGTTTTTTCATCAAGT+GGG | - | chr5.4:66997818-66997837 | MS.gene90619:CDS | 25.0% |
| !!! | TTTAGAGTTTTTTCATCAAG+TGG | - | chr5.4:66997817-66997836 | MS.gene90619:CDS | 25.0% |
| AAGCAGTAAAATTGTTTCCA+GGG | - | chr5.4:66998338-66998357 | MS.gene90619:CDS | 30.0% | |
| ACACTTACTCGACAATATAT+CGG | + | chr5.4:66997993-66998012 | None:intergenic | 30.0% | |
| ATATGAAACTATGGTACTCA+AGG | + | chr5.4:66998641-66998660 | None:intergenic | 30.0% | |
| ATCTCACAAGACATTCTATT+GGG | + | chr5.4:66998522-66998541 | None:intergenic | 30.0% | |
| ATGAGGAAATTGATGAAATG+TGG | + | chr5.4:66997305-66997324 | None:intergenic | 30.0% | |
| CTTCTAAACAGAAACATAAG+AGG | - | chr5.4:66998218-66998237 | MS.gene90619:CDS | 30.0% | |
| GAGTTTAGGAATTAATCACA+CGG | - | chr5.4:66997421-66997440 | MS.gene90619:CDS | 30.0% | |
| TATCTCACAAGACATTCTAT+TGG | + | chr5.4:66998523-66998542 | None:intergenic | 30.0% | |
| TCATGTATTGTGTTATCATG+GGG | - | chr5.4:66997511-66997530 | MS.gene90619:CDS | 30.0% | |
| TGAAAGAAATGGAAGAAGAT+GGG | + | chr5.4:66997115-66997134 | None:intergenic | 30.0% | |
| TTCGATAAAAGGTTATAGAG+CGG | - | chr5.4:66998117-66998136 | MS.gene90619:CDS | 30.0% | |
| TTGAAAGAAATGGAAGAAGA+TGG | + | chr5.4:66997116-66997135 | None:intergenic | 30.0% | |
| TTGAGCAAACATTCGATAAA+AGG | - | chr5.4:66998106-66998125 | MS.gene90619:CDS | 30.0% | |
| ! | ATTCTGCATAAATCAGCTTT+TGG | + | chr5.4:66998163-66998182 | None:intergenic | 30.0% |
| ! | CTTGATTGGTTGAAAAGAAT+TGG | - | chr5.4:66997722-66997741 | MS.gene90619:CDS | 30.0% |
| !! | AGTTTGTTGTTGTTCTTGAT+TGG | - | chr5.4:66997708-66997727 | MS.gene90619:CDS | 30.0% |
| !! | ATACCCAACATACTTTTTAC+AGG | - | chr5.4:66998540-66998559 | MS.gene90619:CDS | 30.0% |
| !! | TATGTATGATTTGTTCAAGG+GGG | - | chr5.4:66997856-66997875 | MS.gene90619:CDS | 30.0% |
| !!! | GAAATTTTTGGGTATGGAAA+TGG | - | chr5.4:66997575-66997594 | MS.gene90619:CDS | 30.0% |
| !!! | GAACCTTTTTTAGAGAGTTT+AGG | - | chr5.4:66997407-66997426 | MS.gene90619:CDS | 30.0% |
| AAACAGAAACATAAGAGGAG+TGG | - | chr5.4:66998223-66998242 | MS.gene90619:CDS | 35.0% | |
| AGACCTTCCAACAACAAATT+CGG | + | chr5.4:66997884-66997903 | None:intergenic | 35.0% | |
| AGGAATTAATCACACGGAAT+TGG | - | chr5.4:66997427-66997446 | MS.gene90619:CDS | 35.0% | |
| CAAGAGTTTCAATGTATGAG+TGG | - | chr5.4:66998581-66998600 | MS.gene90619:CDS | 35.0% | |
| CCCAAAAATTTCTCTTGCTT+CGG | + | chr5.4:66997567-66997586 | None:intergenic | 35.0% | |
| CTCTTCAGGATTAGAATCTT+AGG | + | chr5.4:66998451-66998470 | None:intergenic | 35.0% | |
| GAAGCAGTAAAATTGTTTCC+AGG | - | chr5.4:66998337-66998356 | MS.gene90619:CDS | 35.0% | |
| GAATTGGGATTGAGAGTAAA+TGG | - | chr5.4:66997738-66997757 | MS.gene90619:CDS | 35.0% | |
| TAGGGTTGAAGAGAAAGAAT+GGG | + | chr5.4:66997034-66997053 | None:intergenic | 35.0% | |
| TATATTGTCGAGTAAGTGTG+TGG | - | chr5.4:66997994-66998013 | MS.gene90619:CDS | 35.0% | |
| TCCATTGGAGCTTATTAGTT+TGG | - | chr5.4:66998195-66998214 | MS.gene90619:CDS | 35.0% | |
| TTAGGGTTGAAGAGAAAGAA+TGG | + | chr5.4:66997035-66997054 | None:intergenic | 35.0% | |
| TTCAATGTATGAGTGGTTGA+AGG | - | chr5.4:66998588-66998607 | MS.gene90619:CDS | 35.0% | |
| TTGTGACCCGCTTATTAAAT+TGG | - | chr5.4:66998258-66998277 | MS.gene90619:CDS | 35.0% | |
| TTTAATAAGCGGGTCACAAT+AGG | + | chr5.4:66998257-66998276 | None:intergenic | 35.0% | |
| TTTATACGTTGCCAGATTGT+TGG | + | chr5.4:66998712-66998731 | None:intergenic | 35.0% | |
| TTTGTGAATATGCATCCTGA+AGG | - | chr5.4:66998685-66998704 | MS.gene90619:CDS | 35.0% | |
| ! | ACCGAAGCAAGAGAAATTTT+TGG | - | chr5.4:66997563-66997582 | MS.gene90619:CDS | 35.0% |
| ! | ACGTCCTGTAAAAAGTATGT+TGG | + | chr5.4:66998547-66998566 | None:intergenic | 35.0% |
| ! | CCGAAGCAAGAGAAATTTTT+GGG | - | chr5.4:66997564-66997583 | MS.gene90619:CDS | 35.0% |
| ! | CGTCCTGTAAAAAGTATGTT+GGG | + | chr5.4:66998546-66998565 | None:intergenic | 35.0% |
| ! | GATGAAATGTGGAGAGTTTT+TGG | + | chr5.4:66997294-66997313 | None:intergenic | 35.0% |
| ! | GTGAGAAAAATTGGGGTTTT+GGG | + | chr5.4:66997066-66997085 | None:intergenic | 35.0% |
| ! | TCTAGGTCGGTTTATTAAGT+CGG | - | chr5.4:66997925-66997944 | MS.gene90619:CDS | 35.0% |
| ! | TGAGAAAAATTGGGGTTTTG+GGG | + | chr5.4:66997065-66997084 | None:intergenic | 35.0% |
| !! | AAATGGAAGAAGATGGGTTT+TGG | + | chr5.4:66997109-66997128 | None:intergenic | 35.0% |
| !! | AACATACTTTTTACAGGACG+TGG | - | chr5.4:66998546-66998565 | MS.gene90619:CDS | 35.0% |
| !! | AATTTGTTGTTGGAAGGTCT+AGG | - | chr5.4:66997884-66997903 | MS.gene90619:CDS | 35.0% |
| !! | ATTTGTTGTTGGAAGGTCTA+GGG | - | chr5.4:66997885-66997904 | MS.gene90619:CDS | 35.0% |
| !! | GGGTTTTGGTGAGAAAAATT+GGG | + | chr5.4:66997074-66997093 | None:intergenic | 35.0% |
| !! | GGTTTTGGTGAGAAAAATTG+GGG | + | chr5.4:66997073-66997092 | None:intergenic | 35.0% |
| !!! | GCAAGAGAAATTTTTGGGTA+TGG | - | chr5.4:66997569-66997588 | MS.gene90619:CDS | 35.0% |
| !!! | TGTAGTTTTGTGTGTAGTGA+AGG | + | chr5.4:66997247-66997266 | None:intergenic | 35.0% |
| !!! | TGTTTGTTGTCCTTTGCTTT+TGG | - | chr5.4:66997667-66997686 | MS.gene90619:CDS | 35.0% |
| AAAATCAACATCCCTGACGA+TGG | - | chr5.4:66997329-66997348 | MS.gene90619:CDS | 40.0% | |
| ACATCACCAACCAAAAGCAA+AGG | + | chr5.4:66997680-66997699 | None:intergenic | 40.0% | |
| AGAAACATAAGAGGAGTGGA+GGG | - | chr5.4:66998227-66998246 | MS.gene90619:CDS | 40.0% | |
| AGGGTATATGGAAAACTCTG+AGG | - | chr5.4:66998306-66998325 | MS.gene90619:CDS | 40.0% | |
| AGGTTATAGAGCGGTTTGTA+AGG | - | chr5.4:66998126-66998145 | MS.gene90619:CDS | 40.0% | |
| CTTGCTGAAACTAGGGTATA+TGG | - | chr5.4:66998294-66998313 | MS.gene90619:CDS | 40.0% | |
| GCCAAACTAATAAGCTCCAA+TGG | + | chr5.4:66998199-66998218 | None:intergenic | 40.0% | |
| GTAAAATTGTTTCCAGGGAG+AGG | - | chr5.4:66998343-66998362 | MS.gene90619:CDS | 40.0% | |
| GTAAATTGGTGGAGAAAGAG+CGG | + | chr5.4:66997177-66997196 | None:intergenic | 40.0% | |
| TAAATTGGTGGAGAAAGAGC+GGG | + | chr5.4:66997176-66997195 | None:intergenic | 40.0% | |
| TGATCAGTTACAGGAGAGAT+TGG | - | chr5.4:66998366-66998385 | MS.gene90619:CDS | 40.0% | |
| TGTATGAGTGGTTGAAGGAA+AGG | - | chr5.4:66998593-66998612 | MS.gene90619:CDS | 40.0% | |
| TTGTAGCACTGCGATTAGAA+TGG | - | chr5.4:66998414-66998433 | MS.gene90619:CDS | 40.0% | |
| ! | ACGTTGTGCTTCAATTTTCG+TGG | + | chr5.4:66997210-66997229 | None:intergenic | 40.0% |
| ! | AGGAAGCTGTTCTTGTTTCT+AGG | - | chr5.4:66997908-66997927 | MS.gene90619:CDS | 40.0% |
| ! | CTAGGTCGGTTTATTAAGTC+GGG | - | chr5.4:66997926-66997945 | MS.gene90619:CDS | 40.0% |
| ! | GGTGAGAAAAATTGGGGTTT+TGG | + | chr5.4:66997067-66997086 | None:intergenic | 40.0% |
| ! | TATGGAAAACTCTGAGGAGA+TGG | - | chr5.4:66998312-66998331 | MS.gene90619:CDS | 40.0% |
| ! | TGGGTATGGAAATGGAGTTT+TGG | - | chr5.4:66997583-66997602 | MS.gene90619:CDS | 40.0% |
| !! | AGCTGTTCTTGTTTCTAGGT+CGG | - | chr5.4:66997912-66997931 | MS.gene90619:CDS | 40.0% |
| !! | CTAGTTCTAGCACTTATAGC+TGG | - | chr5.4:66997777-66997796 | MS.gene90619:CDS | 40.0% |
| !! | GATCCGAATTTGTTGTTGGA+AGG | - | chr5.4:66997878-66997897 | MS.gene90619:CDS | 40.0% |
| !! | GGGGTTTTGGTGAGAAAAAT+TGG | + | chr5.4:66997075-66997094 | None:intergenic | 40.0% |
| !! | GGGTTTTGGTGCAAGAAATT+GGG | + | chr5.4:66997095-66997114 | None:intergenic | 40.0% |
| !! | GGTGGATTTTGAACAGTTCA+AGG | + | chr5.4:66997147-66997166 | None:intergenic | 40.0% |
| !! | GGTTTTGGTGCAAGAAATTG+GGG | + | chr5.4:66997094-66997113 | None:intergenic | 40.0% |
| !! | TGGGTTTTGGTGCAAGAAAT+TGG | + | chr5.4:66997096-66997115 | None:intergenic | 40.0% |
| !! | TGTTGTCCTTTGCTTTTGGT+TGG | - | chr5.4:66997671-66997690 | MS.gene90619:CDS | 40.0% |
| !!! | ATCGTCAGGGATGTTGATTT+TGG | + | chr5.4:66997330-66997349 | None:intergenic | 40.0% |
| !!! | GGATGTTGATTTTGGAGATG+AGG | + | chr5.4:66997322-66997341 | None:intergenic | 40.0% |
| AATCCAAACCAGCTTCTACG+AGG | + | chr5.4:66998396-66998415 | None:intergenic | 45.0% | |
| ACGGCTTTCTTGCTGAAACT+AGG | - | chr5.4:66998286-66998305 | MS.gene90619:CDS | 45.0% | |
| AGAGCGGTTTGTAAGGAGTT+AGG | - | chr5.4:66998133-66998152 | MS.gene90619:CDS | 45.0% | |
| ATCCTGAAGGTCCAACAATC+TGG | - | chr5.4:66998698-66998717 | MS.gene90619:CDS | 45.0% | |
| ATCTTCGCCATTCGATTCCT+CGG | + | chr5.4:66997539-66997558 | None:intergenic | 45.0% | |
| CAGAAACATAAGAGGAGTGG+AGG | - | chr5.4:66998226-66998245 | MS.gene90619:CDS | 45.0% | |
| CGGCTTTCTTGCTGAAACTA+GGG | - | chr5.4:66998287-66998306 | MS.gene90619:CDS | 45.0% | |
| GCGCGTTTGATGTAAATTGG+TGG | + | chr5.4:66997188-66997207 | None:intergenic | 45.0% | |
| GTGGCGCGTTTGATGTAAAT+TGG | + | chr5.4:66997191-66997210 | None:intergenic | 45.0% | |
| TGGAGAAAGAGCGGGAATTT+GGG | + | chr5.4:66997168-66997187 | None:intergenic | 45.0% | |
| ! | GGTGCAAGAAATTGGGGTTT+TGG | + | chr5.4:66997088-66997107 | None:intergenic | 45.0% |
| !!! | AAAATTGGGGTTTTGGGGTG+TGG | + | chr5.4:66997060-66997079 | None:intergenic | 45.0% |
| !!! | GGTTTTGGGGTGTGGAATTA+GGG | + | chr5.4:66997052-66997071 | None:intergenic | 45.0% |
| AGAAAGAGCGGGAATTTGGG+TGG | + | chr5.4:66997165-66997184 | None:intergenic | 50.0% | |
| AGGGAGAGGTGATCAGTTAC+AGG | - | chr5.4:66998357-66998376 | MS.gene90619:CDS | 50.0% | |
| GAAAAACGTCGCCATCGTCA+GGG | + | chr5.4:66997343-66997362 | None:intergenic | 50.0% | |
| GTGGAGAAAGAGCGGGAATT+TGG | + | chr5.4:66997169-66997188 | None:intergenic | 50.0% | |
| TGCCAGATTGTTGGACCTTC+AGG | + | chr5.4:66998703-66998722 | None:intergenic | 50.0% | |
| TGTAACTGATCACCTCTCCC+TGG | + | chr5.4:66998358-66998377 | None:intergenic | 50.0% | |
| TGTGTTATCATGGGGTTCCG+AGG | - | chr5.4:66997519-66997538 | MS.gene90619:CDS | 50.0% | |
| TGTTGTTGGAAGGTCTAGGG+AGG | - | chr5.4:66997888-66997907 | MS.gene90619:CDS | 50.0% | |
| ! | ACGTTTTTCGTGCTCTCAGC+AGG | - | chr5.4:66997354-66997373 | MS.gene90619:CDS | 50.0% |
| !! | GGGGGATCCGAATTTGTTGT+TGG | - | chr5.4:66997874-66997893 | MS.gene90619:CDS | 50.0% |
| !!! | GGGTTTTGGGGTGTGGAATT+AGG | + | chr5.4:66997053-66997072 | None:intergenic | 50.0% |
| CGAAAAACGTCGCCATCGTC+AGG | + | chr5.4:66997344-66997363 | None:intergenic | 55.0% | |
| CTGCCTCGTAGAAGCTGGTT+TGG | - | chr5.4:66998390-66998409 | MS.gene90619:CDS | 55.0% | |
| TGGGGTTCCGAGGAATCGAA+TGG | - | chr5.4:66997529-66997548 | MS.gene90619:CDS | 55.0% | |
| TTGGACTGCCTCGTAGAAGC+TGG | - | chr5.4:66998385-66998404 | MS.gene90619:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 66996996 | 66998759 | 66996996 | ID=MS.gene90619 |
| chr5.4 | mRNA | 66996996 | 66998759 | 66996996 | ID=MS.gene90619.t1;Parent=MS.gene90619 |
| chr5.4 | exon | 66996996 | 66998759 | 66996996 | ID=MS.gene90619.t1.exon1;Parent=MS.gene90619.t1 |
| chr5.4 | CDS | 66996996 | 66998759 | 66996996 | ID=cds.MS.gene90619.t1;Parent=MS.gene90619.t1 |
| Gene Sequence |
| Protein sequence |
