AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90901

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90901.t1 MTR_1g116790 90.341 352 13 8 1 340 1 343 0.0 504
MS.gene90901.t1 MTR_1g052470 42.023 257 120 7 95 334 126 370 1.61e-41 149
MS.gene90901.t1 MTR_4g065870 62.617 107 39 1 233 338 325 431 1.24e-37 139
MS.gene90901.t1 MTR_2g098310 61.404 114 39 2 228 338 297 408 6.06e-37 137
MS.gene90901.t1 MTR_8g036235 33.333 384 167 12 16 334 29 388 1.03e-36 136
MS.gene90901.t1 MTR_4g033295 58.947 95 39 0 244 338 100 194 9.25e-34 123
MS.gene90901.t1 MTR_4g065870 66.304 92 30 1 233 323 325 416 2.59e-33 127
MS.gene90901.t1 MTR_2g098310 62.376 101 33 2 228 325 297 395 6.38e-33 126
MS.gene90901.t1 MTR_3g028520 38.672 256 115 10 96 335 166 395 4.61e-32 124
MS.gene90901.t1 MTR_3g027650 38.672 256 115 10 96 335 166 395 4.61e-32 124
MS.gene90901.t1 MTR_4g033295 65.000 80 28 0 244 323 100 179 5.10e-31 115
MS.gene90901.t1 MTR_3g027650 39.344 244 106 9 96 323 166 383 3.50e-30 119
MS.gene90901.t1 MTR_2g098310 46.980 149 39 3 228 338 297 443 7.21e-30 119
MS.gene90901.t1 MTR_8g036235 31.700 347 154 11 16 300 29 354 3.29e-25 105
MS.gene90901.t1 MTR_7g092540 31.056 322 159 10 69 338 9 319 3.44e-25 103
MS.gene90901.t1 MTR_7g092540 31.715 309 148 10 69 325 9 306 9.11e-24 99.8
MS.gene90901.t1 MTR_2g098310 63.158 76 23 2 228 300 297 370 1.66e-22 97.8
MS.gene90901.t1 MTR_4g033295 67.213 61 20 0 244 304 100 160 3.16e-22 92.8
MS.gene90901.t1 MTR_4g065870 65.217 69 23 1 233 300 325 393 7.22e-22 95.9
MS.gene90901.t1 MTR_3g027650 35.747 221 100 9 96 300 166 360 2.06e-18 85.5
MS.gene90901.t1 MTR_1g052470 36.816 201 98 7 95 278 126 314 1.00e-15 77.0
MS.gene90901.t1 MTR_4g131160 53.846 65 29 1 261 325 195 258 6.34e-14 72.4
MS.gene90901.t1 MTR_4g131160 53.846 65 29 1 261 325 198 261 6.65e-14 72.4
MS.gene90901.t1 MTR_6g052280 49.315 73 34 2 230 300 21 92 1.75e-12 64.3
MS.gene90901.t1 MTR_1g080890 50.769 65 31 1 261 325 192 255 4.31e-12 66.6
MS.gene90901.t1 MTR_3g498825 50.000 64 32 0 262 325 147 210 8.66e-12 65.9
MS.gene90901.t1 MTR_8g012290 47.059 68 36 0 262 329 291 358 2.11e-11 65.1
MS.gene90901.t1 MTR_8g012290 47.059 68 36 0 262 329 291 358 2.11e-11 65.1
MS.gene90901.t1 MTR_3g116770 47.059 68 36 0 262 329 191 258 2.53e-11 64.7
MS.gene90901.t1 MTR_3g116770 47.059 68 36 0 262 329 191 258 2.53e-11 64.7
MS.gene90901.t1 MTR_5g005110 50.000 68 33 1 261 328 223 289 3.11e-11 63.9
MS.gene90901.t1 MTR_1g018090 50.000 68 33 1 261 328 273 339 3.13e-11 64.3
MS.gene90901.t1 MTR_8g062240 46.377 69 37 0 262 330 151 219 3.17e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90901.t1 AT1G05805 43.478 368 122 13 27 338 22 359 5.82e-70 223
MS.gene90901.t1 AT2G43140 50.000 272 77 12 92 338 71 308 1.89e-62 201
MS.gene90901.t1 AT2G43140 54.930 213 62 8 134 338 25 211 4.87e-59 189
MS.gene90901.t1 AT1G51140 61.765 102 35 1 233 334 279 376 3.35e-36 135
MS.gene90901.t1 AT1G35460 61.290 93 36 0 246 338 165 257 5.80e-36 131
MS.gene90901.t1 AT2G42280 71.429 84 24 0 255 338 272 355 9.02e-35 130
MS.gene90901.t1 AT4G09180 60.870 92 36 0 247 338 169 260 1.01e-33 125
MS.gene90901.t1 AT2G42280 79.710 69 14 0 255 323 272 340 4.88e-31 120
MS.gene90901.t1 AT1G35460 57.500 80 26 2 233 304 144 223 2.54e-23 96.7
MS.gene90901.t1 AT2G24260 55.385 65 28 1 261 325 34 97 6.71e-14 70.9
MS.gene90901.t1 AT2G24260 55.385 65 28 1 261 325 137 200 1.16e-13 71.6
MS.gene90901.t1 AT5G58010 50.769 65 31 1 261 325 98 161 1.98e-13 70.5
MS.gene90901.t1 AT4G30980 53.846 65 29 1 261 325 129 192 2.14e-13 70.5
MS.gene90901.t1 AT4G30980 53.846 65 29 1 261 325 177 240 3.15e-13 70.1
MS.gene90901.t1 AT1G25330 45.833 72 37 1 254 325 98 167 2.45e-12 65.9
MS.gene90901.t1 AT4G34530 50.000 64 32 0 262 325 172 235 3.95e-12 66.6
MS.gene90901.t1 AT5G50915 44.737 76 40 1 254 329 130 203 6.01e-12 65.9
MS.gene90901.t1 AT5G50915 44.737 76 40 1 254 329 130 203 6.01e-12 65.9
MS.gene90901.t1 AT5G50915 44.737 76 40 1 254 329 130 203 7.74e-12 65.1
MS.gene90901.t1 AT5G50915 44.737 76 40 1 254 329 130 203 7.74e-12 65.1
MS.gene90901.t1 AT1G68920 44.737 76 41 1 254 329 295 369 1.18e-11 65.9
MS.gene90901.t1 AT1G68920 44.737 76 41 1 254 329 296 370 1.18e-11 65.9
MS.gene90901.t1 AT1G68920 44.737 76 41 1 254 329 296 370 1.18e-11 65.9
MS.gene90901.t1 AT1G68920 44.737 76 41 1 254 329 296 370 1.18e-11 65.9
MS.gene90901.t1 AT1G26260 45.333 75 38 1 254 325 190 264 1.43e-11 65.5
MS.gene90901.t1 AT1G26260 45.333 75 38 1 254 325 212 286 1.55e-11 65.5
MS.gene90901.t1 AT1G26260 45.333 75 38 1 254 325 212 286 1.55e-11 65.5
MS.gene90901.t1 AT1G26260 45.333 75 38 1 254 325 212 286 1.55e-11 65.5
MS.gene90901.t1 AT1G26260 45.333 75 38 1 254 325 212 286 1.55e-11 65.5
MS.gene90901.t1 AT1G26260 45.333 75 38 1 254 325 161 235 1.82e-11 64.7
MS.gene90901.t1 AT3G07340 47.059 68 36 0 262 329 258 325 3.81e-11 64.3
MS.gene90901.t1 AT3G07340 47.059 68 36 0 262 329 258 325 4.41e-11 64.3
MS.gene90901.t1 AT5G48560 43.421 76 41 1 254 329 295 368 5.24e-11 63.9
MS.gene90901.t1 AT5G48560 43.421 76 41 1 254 329 295 368 5.60e-11 63.9
MS.gene90901.t1 AT4G36540 48.438 64 33 0 262 325 141 204 5.60e-11 63.2
MS.gene90901.t1 AT4G36540 48.438 64 33 0 262 325 141 204 5.62e-11 63.2
MS.gene90901.t1 AT2G42300 41.892 74 42 1 253 325 175 248 7.03e-11 63.2
MS.gene90901.t1 AT2G42300 41.892 74 42 1 253 325 175 248 8.79e-11 62.4

Find 89 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGTTGTTGTTATTATTAT+CGG 0.271568 1.2:+86691302 None:intergenic
TTATTCAGACATGCTGGATT+TGG 0.325679 1.2:-86688127 MS.gene90901:CDS
GGAGGATCACGCCTTCTTCC+TGG 0.332014 1.2:-86691796 MS.gene90901:CDS
CCCAGGTATTGGTACTAGTA+TGG 0.340957 1.2:+86691334 None:intergenic
TTTACAAGGGACGGAATCTT+GGG 0.341870 1.2:+86690991 None:intergenic
TCCTCGTAGCATTGCTGAAC+GGG 0.362115 1.2:-86690939 MS.gene90901:intron
GGTCAAGCTGGTGGCTTTGA+TGG 0.364612 1.2:-86691682 MS.gene90901:CDS
AAGATCTCTGCTGTTGTTGT+TGG 0.370571 1.2:+86691713 None:intergenic
TTGTTGTTGTTATTATTATC+GGG 0.382053 1.2:+86691303 None:intergenic
AATTATACCTTATCCATGTT+AGG 0.394411 1.2:+86690759 None:intergenic
GCATCAGCAGCAGCTGGAAA+TGG 0.408966 1.2:-86691363 MS.gene90901:CDS
AAATAATGTTGTCCCGTTCC+AGG 0.410987 1.2:+86691778 None:intergenic
TTGAGAAGAAGAAAATACTA+TGG 0.436830 1.2:+86691272 None:intergenic
TAGTCTCCCACAAACTTCTC+TGG 0.449517 1.2:-86691041 MS.gene90901:CDS
TTCAGACATGCTGGATTTGG+CGG 0.454145 1.2:-86688124 MS.gene90901:CDS
TCACGCCTTCTTCCTGGAAC+GGG 0.457043 1.2:-86691790 MS.gene90901:CDS
GTATCGTCCACCTTCCTCAT+CGG 0.462261 1.2:-86691941 MS.gene90901:CDS
TGGCAAGTTGAAGAAGTTGC+AGG 0.465868 1.2:-86690790 MS.gene90901:CDS
GAGAGAAGAACTAGAATAAG+TGG 0.469542 1.2:-86690810 MS.gene90901:CDS
TATGATTGAGAGTGGCTAGA+TGG 0.473699 1.2:+86691614 None:intergenic
AGGTCTTCAAACTCAAGTTC+AGG 0.476074 1.2:-86688088 MS.gene90901:intron
GGGGCCTCCACCCCAGGTAT+TGG 0.479871 1.2:+86691323 None:intergenic
ACAGAGCTCCATCAGTCAAA+CGG 0.480020 1.2:-86691887 MS.gene90901:CDS
TATCGTCCACCTTCCTCATC+GGG 0.481788 1.2:-86691940 MS.gene90901:CDS
CAGAGCTCCATCAGTCAAAC+GGG 0.487084 1.2:-86691886 MS.gene90901:CDS
CATAATAACAATAACAATAA+CGG 0.488709 1.2:-86691595 MS.gene90901:intron
ATTATCGGGGCCTCCACCCC+AGG 0.489981 1.2:+86691317 None:intergenic
ACCACTGTGGATGCCATCAT+AGG 0.495661 1.2:-86691823 MS.gene90901:CDS
ATGAGTGGCGCATCCACGCT+TGG 0.498051 1.2:+86690961 None:intergenic
AAGAAGGTCGGGATCATCAT+TGG 0.499212 1.2:+86691188 None:intergenic
AACAAGTTATTCAGACATGC+TGG 0.500068 1.2:-86688133 MS.gene90901:CDS
TGTACTTTGTTTGCATCCGC+AGG 0.501831 1.2:+86687825 None:intergenic
CCCACAAACTTCTCTGGAGA+TGG 0.503550 1.2:-86691035 MS.gene90901:CDS
AAGTCTGAATTGAGTTTCAC+TGG 0.510691 1.2:-86691435 MS.gene90901:CDS
CCTTGTACCTAACATGGATA+AGG 0.512854 1.2:-86690766 MS.gene90901:intron
CCTTATCCATGTTAGGTACA+AGG 0.519581 1.2:+86690766 None:intergenic
CAAACGGGTCTCACAAGGTA+TGG 0.525076 1.2:-86691871 MS.gene90901:CDS
AGGCAATGTAGAAGAAGGTC+GGG 0.527337 1.2:+86691177 None:intergenic
TCCATACTAGTACCAATACC+TGG 0.528579 1.2:-86691335 MS.gene90901:CDS
GTGGTGTTGAGGAGAGAGCT+AGG 0.530531 1.2:+86691841 None:intergenic
GATTATGCATCAGCAGCAGC+TGG 0.531366 1.2:-86691369 MS.gene90901:CDS
GGCTAGATGGTTGAGAAAGC+CGG 0.532966 1.2:+86691627 None:intergenic
GAATTGAGTTTCACTGGTGG+AGG 0.537805 1.2:-86691429 MS.gene90901:CDS
GTTGTCCCGTTCCAGGAAGA+AGG 0.539397 1.2:+86691785 None:intergenic
CCATCTCCAGAGAAGTTTGT+GGG 0.544047 1.2:+86691035 None:intergenic
TGTAAAATCCGTGCCAAGCG+TGG 0.544695 1.2:-86690974 MS.gene90901:CDS
GGGGAATATTATGCATAAGC+TGG 0.546019 1.2:+86691011 None:intergenic
TGGCGCATCCACGCTTGGCA+CGG 0.548021 1.2:+86690966 None:intergenic
CCTCAATGCCCTCGAAACTC+AGG 0.548042 1.2:-86691157 MS.gene90901:intron
ATCCTCGTAGCATTGCTGAA+CGG 0.552987 1.2:-86690940 MS.gene90901:CDS
TGTGAGACCCGTTTGACTGA+TGG 0.553828 1.2:+86691879 None:intergenic
AGTACCAATACCTGGGGTGG+AGG 0.556362 1.2:-86691327 MS.gene90901:CDS
TCCATCTCCAGAGAAGTTTG+TGG 0.557386 1.2:+86691034 None:intergenic
TGATCCTCCTACTCCTATGA+TGG 0.563521 1.2:+86691810 None:intergenic
GAGATAGTACCTGAGTTTCG+AGG 0.564156 1.2:+86691148 None:intergenic
TGTTGTTGTTATTATTATCG+GGG 0.564933 1.2:+86691304 None:intergenic
TCTTCTTACGAAGGTCAAGC+TGG 0.565420 1.2:-86691694 MS.gene90901:CDS
ATCACGCCTTCTTCCTGGAA+CGG 0.566174 1.2:-86691791 MS.gene90901:CDS
CATTGAGGCAATGTAGAAGA+AGG 0.573373 1.2:+86691172 None:intergenic
CCTGAGTTTCGAGGGCATTG+AGG 0.579102 1.2:+86691157 None:intergenic
AGATGGTTGAGAAAGCCGGC+TGG 0.579941 1.2:+86691631 None:intergenic
ATTGTTATTATGATTGAGAG+TGG 0.580253 1.2:+86691606 None:intergenic
GAGGCAATGTAGAAGAAGGT+CGG 0.583589 1.2:+86691176 None:intergenic
GTGGATGCCATCATAGGAGT+AGG 0.587569 1.2:-86691817 MS.gene90901:CDS
CTGTTGTTGCTGAGACGAAG+AGG 0.588667 1.2:+86691906 None:intergenic
TTGGCGGTTCAACATATCAA+AGG 0.593157 1.2:-86688108 MS.gene90901:CDS
CCATACTAGTACCAATACCT+GGG 0.597961 1.2:-86691334 MS.gene90901:CDS
AGATAGTACCTGAGTTTCGA+GGG 0.598370 1.2:+86691149 None:intergenic
GACCTTGAGAATTGCACCTG+CGG 0.607185 1.2:-86687841 MS.gene90901:CDS
CGTCAGAAAAGCTCTCCAGC+CGG 0.607974 1.2:-86691646 MS.gene90901:CDS
AGCAATGCTACGAGGATGAG+TGG 0.612328 1.2:+86690946 None:intergenic
GATGCCATCATAGGAGTAGG+AGG 0.612834 1.2:-86691814 MS.gene90901:CDS
ATCCGCAGGTGCAATTCTCA+AGG 0.615432 1.2:+86687839 None:intergenic
GAAGAAGAACCCGATGAGGA+AGG 0.617996 1.2:+86691931 None:intergenic
GAAGAACCCGATGAGGAAGG+TGG 0.619178 1.2:+86691934 None:intergenic
TTGATTGAATTGCAGCTGGG+GGG 0.621095 1.2:-86691488 MS.gene90901:intron
TCAGTCAAACGGGTCTCACA+AGG 0.625307 1.2:-86691876 MS.gene90901:CDS
ACTAGTACCAATACCTGGGG+TGG 0.626810 1.2:-86691330 MS.gene90901:CDS
TGGCATCCACAGTGGTGTTG+AGG 0.637238 1.2:+86691830 None:intergenic
TTACAAGGGACGGAATCTTG+GGG 0.638798 1.2:+86690992 None:intergenic
TCTTACGAAGGTCAAGCTGG+TGG 0.649831 1.2:-86691691 MS.gene90901:CDS
GCAGGACCTTGTACCTAACA+TGG 0.655399 1.2:-86690772 MS.gene90901:CDS
TCTGAATTGAGTTTCACTGG+TGG 0.663147 1.2:-86691432 MS.gene90901:CDS
GGAAGAAGAAGAACCCGATG+AGG 0.673921 1.2:+86691927 None:intergenic
TCCTATGATGGCATCCACAG+TGG 0.685277 1.2:+86691822 None:intergenic
CAGCAGAGATCTTCTTACGA+AGG 0.692275 1.2:-86691703 MS.gene90901:CDS
CTCTCTCCTCAACACCACTG+TGG 0.695914 1.2:-86691836 MS.gene90901:CDS
ACCCGTTCAGCAATGCTACG+AGG 0.708822 1.2:+86690938 None:intergenic
CATACTAGTACCAATACCTG+GGG 0.722107 1.2:-86691333 MS.gene90901:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAATATTTCATTGAT+AGG - chr1.2:86691797-86691816 MS.gene90901:CDS 10.0%
!! TTGAATTATTTATGTATTTA+AGG + chr1.2:86690247-86690266 None:intergenic 10.0%
!! AAATGAATTAATAATAGGTA+AGG + chr1.2:86689064-86689083 None:intergenic 15.0%
!! AATTATGAACTAATTTAACT+TGG + chr1.2:86691420-86691439 None:intergenic 15.0%
!! CATAATAACAATAACAATAA+CGG - chr1.2:86688170-86688189 MS.gene90901:intron 15.0%
!! TAACTAAAAATGAAATAATG+TGG + chr1.2:86688673-86688692 None:intergenic 15.0%
!! TCTATTAGAAACTTAATTAA+GGG + chr1.2:86689304-86689323 None:intergenic 15.0%
!!! ATATTTTCTACAATAAGTAT+TGG - chr1.2:86691491-86691510 MS.gene90901:intron 15.0%
!!! ATTTATGTATGATAGTTTTT+AGG + chr1.2:86690165-86690184 None:intergenic 15.0%
!!! CTTTTAGATATATACTTTTA+TGG + chr1.2:86689925-86689944 None:intergenic 15.0%
!!! TCTTACTTTGAAAAATAAAA+AGG + chr1.2:86691345-86691364 None:intergenic 15.0%
!!! TTCGTTTTTTTATAAAACTA+TGG - chr1.2:86689659-86689678 MS.gene90901:intron 15.0%
!!! TTTATGTATGATAGTTTTTA+GGG + chr1.2:86690164-86690183 None:intergenic 15.0%
!! AAAATAAGATAAAGGAAAAG+GGG + chr1.2:86689568-86689587 None:intergenic 20.0%
!! AGCTATTACGTATAATATAA+AGG - chr1.2:86689849-86689868 MS.gene90901:intron 20.0%
!! AGTATATATCTAAAAGAACA+AGG - chr1.2:86689929-86689948 MS.gene90901:intron 20.0%
!! CAAAATAAGATAAAGGAAAA+GGG + chr1.2:86689569-86689588 None:intergenic 20.0%
!! CTAGCAAATGAATTAATAAT+AGG + chr1.2:86689069-86689088 None:intergenic 20.0%
!! GTAGAAAATATTTGAATTAC+TGG + chr1.2:86691482-86691501 None:intergenic 20.0%
!! GTCTATTAGAAACTTAATTA+AGG + chr1.2:86689305-86689324 None:intergenic 20.0%
!! TAAATGGTAGTTAAATACTA+TGG + chr1.2:86691270-86691289 None:intergenic 20.0%
!! TACCTTAATGATGATAAATT+AGG + chr1.2:86689103-86689122 None:intergenic 20.0%
!! TCTTTGTTAATGATAACTAA+CGG - chr1.2:86690047-86690066 MS.gene90901:intron 20.0%
!! TTCCTAATTTATCATCATTA+AGG - chr1.2:86689098-86689117 MS.gene90901:intron 20.0%
!!! CTTTTCCTTTATCTTATTTT+GGG - chr1.2:86689568-86689587 MS.gene90901:intron 20.0%
!!! GTTGTTGTTGTTATTATTAT+CGG + chr1.2:86688466-86688485 None:intergenic 20.0%
!!! TACTTTGATTTGTTAATCAA+TGG - chr1.2:86690866-86690885 MS.gene90901:intron 20.0%
!!! TTATGTATGATAGTTTTTAG+GGG + chr1.2:86690163-86690182 None:intergenic 20.0%
!!! TTGTTGTTGTTATTATTATC+GGG + chr1.2:86688465-86688484 None:intergenic 20.0%
!!! TTTTCCTTTATCTTATTTTG+GGG - chr1.2:86689569-86689588 MS.gene90901:intron 20.0%
! AAAATGAAATAATGTGGTTG+TGG + chr1.2:86688667-86688686 None:intergenic 25.0%
! AAACAGTGTTAAACAAAAAG+GGG + chr1.2:86689336-86689355 None:intergenic 25.0%
! AAGTAGCTTGAAACATTATA+TGG - chr1.2:86691296-86691315 MS.gene90901:CDS 25.0%
! AATAAATTCCCAACTCAATA+AGG + chr1.2:86689611-86689630 None:intergenic 25.0%
! AATAATAGGTAAGGAAAGTT+AGG + chr1.2:86689055-86689074 None:intergenic 25.0%
! AATTATACCTTATCCATGTT+AGG + chr1.2:86689009-86689028 None:intergenic 25.0%
! ACTACTAAGGATAAAAACTA+GGG - chr1.2:86689201-86689220 MS.gene90901:intron 25.0%
! AGTGTTTAACTGTGTATTAT+AGG - chr1.2:86691575-86691594 MS.gene90901:intron 25.0%
! ATAAATTCCCAACTCAATAA+GGG + chr1.2:86689610-86689629 None:intergenic 25.0%
! CAAACAGTGTTAAACAAAAA+GGG + chr1.2:86689337-86689356 None:intergenic 25.0%
! CCAAAATAAGATAAAGGAAA+AGG + chr1.2:86689570-86689589 None:intergenic 25.0%
! GACATTCAATGAAAACTTAA+GGG + chr1.2:86689243-86689262 None:intergenic 25.0%
! GCATCTTCAATTGAATTTAT+AGG - chr1.2:86691515-86691534 MS.gene90901:intron 25.0%
! TACTACTAAGGATAAAAACT+AGG - chr1.2:86689200-86689219 MS.gene90901:intron 25.0%
! TGACATTCAATGAAAACTTA+AGG + chr1.2:86689244-86689263 None:intergenic 25.0%
! TGTAGTCAAAAATACTACTA+AGG - chr1.2:86689188-86689207 MS.gene90901:intron 25.0%
! TTAGTTCATAATTACAGAGT+AGG - chr1.2:86691427-86691446 MS.gene90901:CDS 25.0%
! TTATTGTCAGTATTGTGTTT+GGG - chr1.2:86689626-86689645 MS.gene90901:intron 25.0%
! TTGAGAAGAAGAAAATACTA+TGG + chr1.2:86688496-86688515 None:intergenic 25.0%
! TTTATGTATTTAAGGACTGA+TGG + chr1.2:86690239-86690258 None:intergenic 25.0%
! TTTATTGTCAGTATTGTGTT+TGG - chr1.2:86689625-86689644 MS.gene90901:intron 25.0%
!! ACAACTTTTGTTAGTGTTAT+TGG + chr1.2:86691217-86691236 None:intergenic 25.0%
!! ATTGTTATTATGATTGAGAG+TGG + chr1.2:86688162-86688181 None:intergenic 25.0%
!! CAAGCTACTTTAAGTTTAAA+TGG + chr1.2:86691286-86691305 None:intergenic 25.0%
!! TGCATAATCAACAACATTTT+CGG + chr1.2:86688385-86688404 None:intergenic 25.0%
!! TGTTGTTGTTATTATTATCG+GGG + chr1.2:86688464-86688483 None:intergenic 25.0%
!!! AGTAGCTTTTTTTCTTTCAT+TGG + chr1.2:86689388-86689407 None:intergenic 25.0%
!!! ATGTGAAGCTCTTTTTAATT+TGG + chr1.2:86691761-86691780 None:intergenic 25.0%
!!! ATTGCTTTGTTTAAAACTAG+AGG - chr1.2:86690089-86690108 MS.gene90901:intron 25.0%
!!! CCTTTTCCTTTATCTTATTT+TGG - chr1.2:86689567-86689586 MS.gene90901:intron 25.0%
!!! TGTGAAGCTCTTTTTAATTT+GGG + chr1.2:86691760-86691779 None:intergenic 25.0%
!!! TTGCTTTGTTTAAAACTAGA+GGG - chr1.2:86690090-86690109 MS.gene90901:intron 25.0%
AAACAGAAGCAGAAAGAAAA+AGG + chr1.2:86688881-86688900 None:intergenic 30.0%
AACAGTGTTAAACAAAAAGG+GGG + chr1.2:86689335-86689354 None:intergenic 30.0%
AAGGGGATGAAATTAAATAC+CGG + chr1.2:86689551-86689570 None:intergenic 30.0%
AAGGTAATGCACACATTAAT+TGG - chr1.2:86689117-86689136 MS.gene90901:intron 30.0%
AATTACTGGTAATACTCTCA+TGG + chr1.2:86691468-86691487 None:intergenic 30.0%
AGAACCCCAAAATAAGATAA+AGG + chr1.2:86689576-86689595 None:intergenic 30.0%
AGTTGTAGAAATAGTTTCAG+TGG - chr1.2:86691231-86691250 MS.gene90901:CDS 30.0%
ATAATTACAGAGTAGGTAGA+TGG - chr1.2:86691434-86691453 MS.gene90901:CDS 30.0%
ATGATAATAGTAAATGAGCC+AGG - chr1.2:86689874-86689893 MS.gene90901:intron 30.0%
CTTGTAGTAATGAAGTAGTT+AGG - chr1.2:86689160-86689179 MS.gene90901:intron 30.0%
GAAGCTCATTTACACTAAAA+TGG + chr1.2:86691043-86691062 None:intergenic 30.0%
GCAAACAGTGTTAAACAAAA+AGG + chr1.2:86689338-86689357 None:intergenic 30.0%
TAAGACAAAGTCAAAGTCAA+TGG - chr1.2:86688210-86688229 MS.gene90901:intron 30.0%
TAGCAGATAATACAGAGAAT+GGG - chr1.2:86691124-86691143 MS.gene90901:intron 30.0%
TTCAAATCCCTTATTGAGTT+GGG - chr1.2:86689600-86689619 MS.gene90901:intron 30.0%
TTTCAAATCCCTTATTGAGT+TGG - chr1.2:86689599-86689618 MS.gene90901:intron 30.0%
! AAAACTATGGTTGTTTCAAG+TGG - chr1.2:86689672-86689691 MS.gene90901:intron 30.0%
! AACTGTGAGACAATGATTTT+GGG + chr1.2:86689707-86689726 None:intergenic 30.0%
! ATAGCTTTACTTCATGTTGT+TGG + chr1.2:86689835-86689854 None:intergenic 30.0%
! ATGTTATTTAGTGAAACCTC+AGG - chr1.2:86690120-86690139 MS.gene90901:intron 30.0%
! CTTTAAAAAACCAGAAACAG+CGG - chr1.2:86690339-86690358 MS.gene90901:intron 30.0%
! GTCAAGTTTAAAACTAGAGA+GGG + chr1.2:86689273-86689292 None:intergenic 30.0%
! TGTCAAGTTTAAAACTAGAG+AGG + chr1.2:86689274-86689293 None:intergenic 30.0%
! TGTTATTTAGTGAAACCTCA+GGG - chr1.2:86690121-86690140 MS.gene90901:intron 30.0%
!! ATTTTTGATTGAATTGCAGC+TGG - chr1.2:86688273-86688292 MS.gene90901:intron 30.0%
!! TGCTTTGTTTAAAACTAGAG+GGG - chr1.2:86690091-86690110 MS.gene90901:intron 30.0%
!! TTTTTGATTGAATTGCAGCT+GGG - chr1.2:86688274-86688293 MS.gene90901:intron 30.0%
!!! CCTTTTTTTTCGTCTATAAC+CGG - chr1.2:86689529-86689548 MS.gene90901:intron 30.0%
!!! GCTGTTTCTGGTTTTTTAAA+GGG + chr1.2:86690340-86690359 None:intergenic 30.0%
AACAAGTTATTCAGACATGC+TGG - chr1.2:86691632-86691651 MS.gene90901:CDS 35.0%
AAGTCTGAATTGAGTTTCAC+TGG - chr1.2:86688330-86688349 MS.gene90901:intron 35.0%
ACAATAATACTCTCAAGTCC+AGG + chr1.2:86690809-86690828 None:intergenic 35.0%
ACAGTGTTAAACAAAAAGGG+GGG + chr1.2:86689334-86689353 None:intergenic 35.0%
AGAAAGAAGAATGCTAGACA+TGG - chr1.2:86689971-86689990 MS.gene90901:intron 35.0%
ATTCGACTATACAAAGAGTC+AGG - chr1.2:86691386-86691405 MS.gene90901:CDS 35.0%
ATTCTACTCAGTAGAAGCTA+CGG + chr1.2:86691715-86691734 None:intergenic 35.0%
CCGGTTATAGACGAAAAAAA+AGG + chr1.2:86689532-86689551 None:intergenic 35.0%
CTATTGCAATACATGTATGC+AGG - chr1.2:86688933-86688952 MS.gene90901:intron 35.0%
GAAAGTTAGGAAGCAAAAGT+TGG + chr1.2:86689042-86689061 None:intergenic 35.0%
GAGAGAAGAACTAGAATAAG+TGG - chr1.2:86688955-86688974 MS.gene90901:intron 35.0%
GTAGCAGATAATACAGAGAA+TGG - chr1.2:86691123-86691142 MS.gene90901:intron 35.0%
GTATTGTGTTTGGGAAGATA+TGG - chr1.2:86689635-86689654 MS.gene90901:intron 35.0%
GTGTAACTGAAAGAAAACCT+GGG - chr1.2:86690375-86690394 MS.gene90901:intron 35.0%
GTTATTTAGTGAAACCTCAG+GGG - chr1.2:86690122-86690141 MS.gene90901:intron 35.0%
TAGAATCGTCTGATACTACT+CGG - chr1.2:86690753-86690772 MS.gene90901:intron 35.0%
TCACAGTAAAACATACTCTC+CGG + chr1.2:86690915-86690934 None:intergenic 35.0%
TGTGTAACTGAAAGAAAACC+TGG - chr1.2:86690374-86690393 MS.gene90901:intron 35.0%
TTATTCAGACATGCTGGATT+TGG - chr1.2:86691638-86691657 MS.gene90901:CDS 35.0%
! CAACTGTGAGACAATGATTT+TGG + chr1.2:86689708-86689727 None:intergenic 35.0%
! GGTTTTCTTTCAGTTACACA+TGG + chr1.2:86690374-86690393 None:intergenic 35.0%
!! ATGACATTTCCAGCTTGTTA+TGG + chr1.2:86690020-86690039 None:intergenic 35.0%
!! TTTTGATTGAATTGCAGCTG+GGG - chr1.2:86688275-86688294 MS.gene90901:intron 35.0%
!!! CGCTGTTTCTGGTTTTTTAA+AGG + chr1.2:86690341-86690360 None:intergenic 35.0%
AAATAATGTTGTCCCGTTCC+AGG + chr1.2:86687990-86688009 None:intergenic 40.0%
AACTGAAAGAAAACCTGGGT+AGG - chr1.2:86690379-86690398 MS.gene90901:intron 40.0%
AAGATCTCTGCTGTTGTTGT+TGG + chr1.2:86688055-86688074 None:intergenic 40.0%
ACAAATGAACCCCTCAATGA+AGG - chr1.2:86689414-86689433 MS.gene90901:intron 40.0%
ACACTTCCTTTGCTGAAACA+CGG + chr1.2:86690555-86690574 None:intergenic 40.0%
ACATGGATGGAATTGGCATA+AGG - chr1.2:86689988-86690007 MS.gene90901:intron 40.0%
AGAAGAATGCTAGACATGGA+TGG - chr1.2:86689975-86689994 MS.gene90901:intron 40.0%
AGATAGTACCTGAGTTTCGA+GGG + chr1.2:86688619-86688638 None:intergenic 40.0%
AGGTCTTCAAACTCAAGTTC+AGG - chr1.2:86691677-86691696 MS.gene90901:CDS 40.0%
AGTAGCCTCTTAACTTAACG+TGG + chr1.2:86689361-86689380 None:intergenic 40.0%
ATGCTAGACATGGATGGAAT+TGG - chr1.2:86689981-86690000 MS.gene90901:intron 40.0%
CAGTGTTAAACAAAAAGGGG+GGG + chr1.2:86689333-86689352 None:intergenic 40.0%
CATACTAGTACCAATACCTG+GGG - chr1.2:86688432-86688451 MS.gene90901:intron 40.0%
CATAGAGAAGAAGGACAAGA+AGG - chr1.2:86689467-86689486 MS.gene90901:intron 40.0%
CATCTATGTTCAAAGCAAGC+AGG + chr1.2:86691000-86691019 None:intergenic 40.0%
CATTGAGGCAATGTAGAAGA+AGG + chr1.2:86688596-86688615 None:intergenic 40.0%
CCATACTAGTACCAATACCT+GGG - chr1.2:86688431-86688450 MS.gene90901:intron 40.0%
CCTTATCCATGTTAGGTACA+AGG + chr1.2:86689002-86689021 None:intergenic 40.0%
CCTTGTACCTAACATGGATA+AGG - chr1.2:86688999-86689018 MS.gene90901:intron 40.0%
CTTCTTGTCCTTCTTCTCTA+TGG + chr1.2:86689469-86689488 None:intergenic 40.0%
GGGGAATATTATGCATAAGC+TGG + chr1.2:86688757-86688776 None:intergenic 40.0%
GGTGAATTGTTTCCCTTTAG+AGG - chr1.2:86690887-86690906 MS.gene90901:intron 40.0%
GGTTCAACAACCTTCATTGA+GGG + chr1.2:86689427-86689446 None:intergenic 40.0%
GTAACTCAAGTCACTCTCTT+TGG + chr1.2:86690967-86690986 None:intergenic 40.0%
GTAGCCTCTTAACTTAACGT+GGG + chr1.2:86689360-86689379 None:intergenic 40.0%
GTGGGAGACTATACTGAATT+AGG + chr1.2:86688715-86688734 None:intergenic 40.0%
GTTCAACAACCTTCATTGAG+GGG + chr1.2:86689426-86689445 None:intergenic 40.0%
GTTGTTCTCCATAGAGAAGA+AGG - chr1.2:86689458-86689477 MS.gene90901:intron 40.0%
GTTGTTGAACCACTCAGTAA+AGG - chr1.2:86689436-86689455 MS.gene90901:intron 40.0%
TAAGCTTCTACCGTCAACTT+TGG - chr1.2:86691091-86691110 MS.gene90901:intron 40.0%
TATGATTGAGAGTGGCTAGA+TGG + chr1.2:86688154-86688173 None:intergenic 40.0%
TCCATACTAGTACCAATACC+TGG - chr1.2:86688430-86688449 MS.gene90901:intron 40.0%
TCTGAATTGAGTTTCACTGG+TGG - chr1.2:86688333-86688352 MS.gene90901:intron 40.0%
TGGTTCAACAACCTTCATTG+AGG + chr1.2:86689428-86689447 None:intergenic 40.0%
TTGGCGGTTCAACATATCAA+AGG - chr1.2:86691657-86691676 MS.gene90901:CDS 40.0%
TTTACAAGGGACGGAATCTT+GGG + chr1.2:86688777-86688796 None:intergenic 40.0%
TTTGAGAACCGTAGTTCAGT+TGG - chr1.2:86690441-86690460 MS.gene90901:intron 40.0%
TTTGATTGAATTGCAGCTGG+GGG - chr1.2:86688276-86688295 MS.gene90901:intron 40.0%
TTTGCCCACGTTAAGTTAAG+AGG - chr1.2:86689353-86689372 MS.gene90901:intron 40.0%
! AACTAACGGTGTTAACCCAA+GGG - chr1.2:86690061-86690080 MS.gene90901:intron 40.0%
! CGATCATGACTACATTGGTT+AGG - chr1.2:86690783-86690802 MS.gene90901:CDS 40.0%
! TAACTAACGGTGTTAACCCA+AGG - chr1.2:86690060-86690079 MS.gene90901:intron 40.0%
! TTGACCACTGTAGTTTGTCT+CGG - chr1.2:86689754-86689773 MS.gene90901:intron 40.0%
! TTTTACAAGGGACGGAATCT+TGG + chr1.2:86688778-86688797 None:intergenic 40.0%
!! GAAGCAAAAGTTGGTAGCAT+GGG + chr1.2:86689033-86689052 None:intergenic 40.0%
AAATGAGCCAGGAAAGTTGC+AGG - chr1.2:86689885-86689904 MS.gene90901:intron 45.0%
AACAAAGCAATCACCTCCCT+TGG + chr1.2:86690080-86690099 None:intergenic 45.0%
AACCAGAAACAGCGGAAGTA+AGG - chr1.2:86690347-86690366 MS.gene90901:intron 45.0%
AACGACATCACAGAGAAGAG+AGG - chr1.2:86690480-86690499 MS.gene90901:intron 45.0%
AAGAAGGTCGGGATCATCAT+TGG + chr1.2:86688580-86688599 None:intergenic 45.0%
AAGGTCTGTTGCGAAACAGA+TGG - chr1.2:86690618-86690637 MS.gene90901:intron 45.0%
AATCGTCTGATACTACTCGG+CGG - chr1.2:86690756-86690775 MS.gene90901:intron 45.0%
ACAAAGCAATCACCTCCCTT+GGG + chr1.2:86690079-86690098 None:intergenic 45.0%
ACAGAGCTCCATCAGTCAAA+CGG - chr1.2:86687878-86687897 MS.gene90901:intron 45.0%
ACAGAGGAAGGCAGAAATGA+AGG - chr1.2:86690302-86690321 MS.gene90901:intron 45.0%
ACTAGACCGTGAGAGAGTAA+GGG - chr1.2:86690505-86690524 MS.gene90901:intron 45.0%
ACTATAGCCTGCAACTTTCC+TGG + chr1.2:86689895-86689914 None:intergenic 45.0%
AGGAGAATGCCATAACAAGC+TGG - chr1.2:86690008-86690027 MS.gene90901:intron 45.0%
AGGCAATGTAGAAGAAGGTC+GGG + chr1.2:86688591-86688610 None:intergenic 45.0%
ATCCTCGTAGCATTGCTGAA+CGG - chr1.2:86688825-86688844 MS.gene90901:intron 45.0%
ATTGCCGAGACAAACTACAG+TGG + chr1.2:86689761-86689780 None:intergenic 45.0%
ATTTAGTGAAACCTCAGGGG+AGG - chr1.2:86690125-86690144 MS.gene90901:intron 45.0%
CAGCAGAGATCTTCTTACGA+AGG - chr1.2:86688062-86688081 MS.gene90901:intron 45.0%
CCATCTCCAGAGAAGTTTGT+GGG + chr1.2:86688733-86688752 None:intergenic 45.0%
CTGCTACCATCCAAAGTTGA+CGG + chr1.2:86691104-86691123 None:intergenic 45.0%
CTTCTACCGTCAACTTTGGA+TGG - chr1.2:86691095-86691114 MS.gene90901:intron 45.0%
GAATTGAGTTTCACTGGTGG+AGG - chr1.2:86688336-86688355 MS.gene90901:intron 45.0%
GAGATAGTACCTGAGTTTCG+AGG + chr1.2:86688620-86688639 None:intergenic 45.0%
GAGGCAATGTAGAAGAAGGT+CGG + chr1.2:86688592-86688611 None:intergenic 45.0%
GGAGAACAACCTTTACTGAG+TGG + chr1.2:86689448-86689467 None:intergenic 45.0%
GTACCAGACCAGTTTCAGAA+AGG - chr1.2:86690599-86690618 MS.gene90901:intron 45.0%
GTTCGCGATCATGACTACAT+TGG - chr1.2:86690778-86690797 MS.gene90901:CDS 45.0%
TAGTCTCCCACAAACTTCTC+TGG - chr1.2:86688724-86688743 MS.gene90901:intron 45.0%
TAGTGTCCGTGTTTCAGCAA+AGG - chr1.2:86690546-86690565 MS.gene90901:intron 45.0%
TCAGACGATTCTACGATCCA+CGG + chr1.2:86690746-86690765 None:intergenic 45.0%
TCCATCTCCAGAGAAGTTTG+TGG + chr1.2:86688734-86688753 None:intergenic 45.0%
TCTTCTTACGAAGGTCAAGC+TGG - chr1.2:86688071-86688090 MS.gene90901:intron 45.0%
TGATCCTCCTACTCCTATGA+TGG + chr1.2:86687958-86687977 None:intergenic 45.0%
TTACAAGGGACGGAATCTTG+GGG + chr1.2:86688776-86688795 None:intergenic 45.0%
TTCAGACATGCTGGATTTGG+CGG - chr1.2:86691641-86691660 MS.gene90901:CDS 45.0%
TTGATTGAATTGCAGCTGGG+GGG - chr1.2:86688277-86688296 MS.gene90901:intron 45.0%
! ATGACTACATTGGTTAGGCC+TGG - chr1.2:86690788-86690807 MS.gene90901:CDS 45.0%
! CGAGTTTGAAGCAGGACTAT+AGG + chr1.2:86690658-86690677 None:intergenic 45.0%
! GCTTGGCACGGATTTTACAA+GGG + chr1.2:86688790-86688809 None:intergenic 45.0%
! TGGCAAGTTGAAGAAGTTGC+AGG - chr1.2:86688975-86688994 MS.gene90901:intron 45.0%
! TGTACTTTGTTTGCATCCGC+AGG + chr1.2:86691943-86691962 None:intergenic 45.0%
! TTGTTTCCCTTTAGAGGAGC+CGG - chr1.2:86690893-86690912 MS.gene90901:intron 45.0%
!! AGACCTTTCTGAAACTGGTC+TGG + chr1.2:86690605-86690624 None:intergenic 45.0%
!! CCCAGGTATTGGTACTAGTA+TGG + chr1.2:86688434-86688453 None:intergenic 45.0%
!! GCAACAGACCTTTCTGAAAC+TGG + chr1.2:86690610-86690629 None:intergenic 45.0%
!! GGAAGCAAAAGTTGGTAGCA+TGG + chr1.2:86689034-86689053 None:intergenic 45.0%
!! TATTATTATTATTATTAGTT+TGG + chr1.2:86688521-86688540 None:intergenic 5.0%
!!! ATTATTATTATTATTAGTTT+GGG + chr1.2:86688520-86688539 None:intergenic 5.0%
AATTGCACTAACCTCCCCTG+AGG + chr1.2:86690139-86690158 None:intergenic 50.0%
ACCACTGTGGATGCCATCAT+AGG - chr1.2:86687942-86687961 MS.gene90901:intron 50.0%
ACTAGTACCAATACCTGGGG+TGG - chr1.2:86688435-86688454 MS.gene90901:intron 50.0%
AGCAATGCTACGAGGATGAG+TGG + chr1.2:86688822-86688841 None:intergenic 50.0%
AGTTGAGAACATGTCGCACG+CGG - chr1.2:86690409-86690428 MS.gene90901:intron 50.0%
ATACTCTCCGGCTCCTCTAA+AGG + chr1.2:86690903-86690922 None:intergenic 50.0%
ATCACGCCTTCTTCCTGGAA+CGG - chr1.2:86687974-86687993 MS.gene90901:intron 50.0%
ATCCGCAGGTGCAATTCTCA+AGG + chr1.2:86691929-86691948 None:intergenic 50.0%
CAAACGGGTCTCACAAGGTA+TGG - chr1.2:86687894-86687913 MS.gene90901:intron 50.0%
CAGAGCTCCATCAGTCAAAC+GGG - chr1.2:86687879-86687898 MS.gene90901:intron 50.0%
CAGCAATCCTGGCTGTATGA+CGG - chr1.2:86690707-86690726 MS.gene90901:intron 50.0%
CCTTCCTCTGTCTGAACTGT+GGG + chr1.2:86690293-86690312 None:intergenic 50.0%
CTAGACCGTGAGAGAGTAAG+GGG - chr1.2:86690506-86690525 MS.gene90901:intron 50.0%
CTGTTGTTGCTGAGACGAAG+AGG + chr1.2:86687862-86687881 None:intergenic 50.0%
GAAGAAGAACCCGATGAGGA+AGG + chr1.2:86687837-86687856 None:intergenic 50.0%
GACCTTGAGAATTGCACCTG+CGG - chr1.2:86691924-86691943 MS.gene90901:CDS 50.0%
GACTAGACCGTGAGAGAGTA+AGG - chr1.2:86690504-86690523 MS.gene90901:intron 50.0%
GAGAACCGTAGTTCAGTTGG+CGG - chr1.2:86690444-86690463 MS.gene90901:intron 50.0%
GATGCCATCATAGGAGTAGG+AGG - chr1.2:86687951-86687970 MS.gene90901:intron 50.0%
GATTATGCATCAGCAGCAGC+TGG - chr1.2:86688396-86688415 MS.gene90901:intron 50.0%
GCAGGACCTTGTACCTAACA+TGG - chr1.2:86688993-86689012 MS.gene90901:intron 50.0%
GGAAGAAGAAGAACCCGATG+AGG + chr1.2:86687841-86687860 None:intergenic 50.0%
GGCTAGATGGTTGAGAAAGC+CGG + chr1.2:86688141-86688160 None:intergenic 50.0%
GTATCGTCCACCTTCCTCAT+CGG - chr1.2:86687824-86687843 MS.gene90901:CDS 50.0%
GTGGATGCCATCATAGGAGT+AGG - chr1.2:86687948-86687967 MS.gene90901:intron 50.0%
GTTTGCCCCTTACTCTCTCA+CGG + chr1.2:86690514-86690533 None:intergenic 50.0%
TACTCTCCGGCTCCTCTAAA+GGG + chr1.2:86690902-86690921 None:intergenic 50.0%
TATCGTCCACCTTCCTCATC+GGG - chr1.2:86687825-86687844 MS.gene90901:CDS 50.0%
TCAGTCAAACGGGTCTCACA+AGG - chr1.2:86687889-86687908 MS.gene90901:intron 50.0%
TCCTATGATGGCATCCACAG+TGG + chr1.2:86687946-86687965 None:intergenic 50.0%
TCCTCGTAGCATTGCTGAAC+GGG - chr1.2:86688826-86688845 MS.gene90901:intron 50.0%
TCTTACGAAGGTCAAGCTGG+TGG - chr1.2:86688074-86688093 MS.gene90901:intron 50.0%
TGTAAAATCCGTGCCAAGCG+TGG - chr1.2:86688791-86688810 MS.gene90901:intron 50.0%
TGTATGACGGCAAGGAACCA+TGG - chr1.2:86690720-86690739 MS.gene90901:intron 50.0%
TGTGAGACCCGTTTGACTGA+TGG + chr1.2:86687889-86687908 None:intergenic 50.0%
TTCACCCACAGTTCAGACAG+AGG - chr1.2:86690286-86690305 MS.gene90901:intron 50.0%
! CCCACAAACTTCTCTGGAGA+TGG - chr1.2:86688730-86688749 MS.gene90901:intron 50.0%
! CGCTTGGCACGGATTTTACA+AGG + chr1.2:86688791-86688810 None:intergenic 50.0%
! GACCTTACTTCCGCTGTTTC+TGG + chr1.2:86690352-86690371 None:intergenic 50.0%
! GCTTTTCTGACGGAGCAAAG+CGG + chr1.2:86688111-86688130 None:intergenic 50.0%
! GGCACGGATTTTACAAGGGA+CGG + chr1.2:86688786-86688805 None:intergenic 50.0%
! TAACGGTGTTAACCCAAGGG+AGG - chr1.2:86690064-86690083 MS.gene90901:intron 50.0%
! TCAACTTTTGCTGCCTACCC+AGG + chr1.2:86690395-86690414 None:intergenic 50.0%
! TGAACTCGCGAGTTTGAAGC+AGG + chr1.2:86690666-86690685 None:intergenic 50.0%
AACCGTAGTTCAGTTGGCGG+TGG - chr1.2:86690447-86690466 MS.gene90901:intron 55.0%
ACCCGTTCAGCAATGCTACG+AGG + chr1.2:86688830-86688849 None:intergenic 55.0%
AGATGGTTGAGAAAGCCGGC+TGG + chr1.2:86688137-86688156 None:intergenic 55.0%
AGTACCAATACCTGGGGTGG+AGG - chr1.2:86688438-86688457 MS.gene90901:intron 55.0%
ATCCTGGCTGTATGACGGCA+AGG - chr1.2:86690712-86690731 MS.gene90901:intron 55.0%
CATACAGCCAGGATTGCTGG+AGG + chr1.2:86690706-86690725 None:intergenic 55.0%
CCCACAGTTCAGACAGAGGA+AGG - chr1.2:86690290-86690309 MS.gene90901:intron 55.0%
CCTCAATGCCCTCGAAACTC+AGG - chr1.2:86688608-86688627 MS.gene90901:intron 55.0%
CGTCAGAAAAGCTCTCCAGC+CGG - chr1.2:86688119-86688138 MS.gene90901:CDS 55.0%
CGTCATACAGCCAGGATTGC+TGG + chr1.2:86690709-86690728 None:intergenic 55.0%
CTCTCTCCTCAACACCACTG+TGG - chr1.2:86687929-86687948 MS.gene90901:intron 55.0%
GAAGAACCCGATGAGGAAGG+TGG + chr1.2:86687834-86687853 None:intergenic 55.0%
GATTCTACGATCCACGGCCA+TGG + chr1.2:86690740-86690759 None:intergenic 55.0%
GCATCAGCAGCAGCTGGAAA+TGG - chr1.2:86688402-86688421 MS.gene90901:intron 55.0%
GCCTTCCTCTGTCTGAACTG+TGG + chr1.2:86690294-86690313 None:intergenic 55.0%
GTTGTCCCGTTCCAGGAAGA+AGG + chr1.2:86687983-86688002 None:intergenic 55.0%
TCACGCCTTCTTCCTGGAAC+GGG - chr1.2:86687975-86687994 MS.gene90901:intron 55.0%
TGGGGGGTTCACAATCACGA+GGG - chr1.2:86688293-86688312 MS.gene90901:intron 55.0%
TTCCTTGCCGTCATACAGCC+AGG + chr1.2:86690717-86690736 None:intergenic 55.0%
! CGGCTGGAGAGCTTTTCTGA+CGG + chr1.2:86688121-86688140 None:intergenic 55.0%
! GATTGCTGGAGGTGTGTCCA+CGG + chr1.2:86690695-86690714 None:intergenic 55.0%
! GTGGTGTTGAGGAGAGAGCT+AGG + chr1.2:86687927-86687946 None:intergenic 55.0%
! TGGCATCCACAGTGGTGTTG+AGG + chr1.2:86687938-86687957 None:intergenic 55.0%
!! CCTGAGTTTCGAGGGCATTG+AGG + chr1.2:86688611-86688630 None:intergenic 55.0%
!! GGTCAAGCTGGTGGCTTTGA+TGG - chr1.2:86688083-86688102 MS.gene90901:intron 55.0%
ATGAGTGGCGCATCCACGCT+TGG + chr1.2:86688807-86688826 None:intergenic 60.0%
CGCCACCGCCAACTGAACTA+CGG + chr1.2:86690452-86690471 None:intergenic 60.0%
CTGGGGGGTTCACAATCACG+AGG - chr1.2:86688292-86688311 MS.gene90901:intron 60.0%
GGACACACCTCCAGCAATCC+TGG - chr1.2:86690696-86690715 MS.gene90901:intron 60.0%
GGAGGATCACGCCTTCTTCC+TGG - chr1.2:86687969-86687988 MS.gene90901:intron 60.0%
GGGGGGTTCACAATCACGAG+GGG - chr1.2:86688294-86688313 MS.gene90901:intron 60.0%
TGAGAACATGTCGCACGCGG+CGG - chr1.2:86690412-86690431 MS.gene90901:intron 60.0%
ACGGCAAGGAACCATGGCCG+TGG - chr1.2:86690726-86690745 MS.gene90901:intron 65.0%
ATTATCGGGGCCTCCACCCC+AGG + chr1.2:86688451-86688470 None:intergenic 65.0%
CTGCTGCTGCTGCTGCTGCT+GGG + chr1.2:86688027-86688046 None:intergenic 65.0%
GTTCAGTTGGCGGTGGCGCA+AGG - chr1.2:86690454-86690473 MS.gene90901:intron 65.0%
TCGCGAGTTCAAACCCGCCG+TGG - chr1.2:86690675-86690694 MS.gene90901:intron 65.0%
TGGCGCATCCACGCTTGGCA+CGG + chr1.2:86688802-86688821 None:intergenic 65.0%
! TGCTGGAGGTGTGTCCACGG+CGG + chr1.2:86690692-86690711 None:intergenic 65.0%
CAGTTGGCGGTGGCGCAAGG+AGG - chr1.2:86690457-86690476 MS.gene90901:intron 70.0%
GCTGCTGCTGCTGCTGCTGC+TGG + chr1.2:86688028-86688047 None:intergenic 70.0%
GGGGCCTCCACCCCAGGTAT+TGG + chr1.2:86688445-86688464 None:intergenic 70.0%
! GCTGGAGGTGTGTCCACGGC+GGG + chr1.2:86690691-86690710 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 86687822 86691965 86687822 ID=MS.gene90901
chr1.2 mRNA 86687822 86691965 86687822 ID=MS.gene90901.t1;Parent=MS.gene90901
chr1.2 exon 86691596 86691965 86691596 ID=MS.gene90901.t1.exon1;Parent=MS.gene90901.t1
chr1.2 CDS 86691596 86691965 86691596 ID=cds.MS.gene90901.t1;Parent=MS.gene90901.t1
chr1.2 exon 86691158 86691495 86691158 ID=MS.gene90901.t1.exon2;Parent=MS.gene90901.t1
chr1.2 CDS 86691158 86691495 86691158 ID=cds.MS.gene90901.t1;Parent=MS.gene90901.t1
chr1.2 exon 86690940 86691065 86690940 ID=MS.gene90901.t1.exon3;Parent=MS.gene90901.t1
chr1.2 CDS 86690940 86691065 86690940 ID=cds.MS.gene90901.t1;Parent=MS.gene90901.t1
chr1.2 exon 86690767 86690832 86690767 ID=MS.gene90901.t1.exon4;Parent=MS.gene90901.t1
chr1.2 CDS 86690767 86690832 86690767 ID=cds.MS.gene90901.t1;Parent=MS.gene90901.t1
chr1.2 exon 86688089 86688157 86688089 ID=MS.gene90901.t1.exon5;Parent=MS.gene90901.t1
chr1.2 CDS 86688089 86688157 86688089 ID=cds.MS.gene90901.t1;Parent=MS.gene90901.t1
chr1.2 exon 86687822 86687875 86687822 ID=MS.gene90901.t1.exon6;Parent=MS.gene90901.t1
chr1.2 CDS 86687822 86687875 86687822 ID=cds.MS.gene90901.t1;Parent=MS.gene90901.t1
Gene Sequence

>MS.gene90901

ATGTATCGTCCACCTTCCTCATCGGGTTCTTCTTCTTCCTCTTCGTCTCAGCAACAACAGAGCTCCATCAGTCAAACGGGTCTCACAAGGTATGGTTCTGCACCTAGCTCTCTCCTCAACACCACTGTGGATGCCATCATAGGAGTAGGAGGATCACGCCTTCTTCCTGGAACGGGACAACATTATTTCTCTGATGACTCTACCCAGCAGCAGCAGCAGCAGCAGCAGCACCAACAACAACAGCAGAGATCTTCTTACGAAGGTCAAGCTGGTGGCTTTGATGGATCCGCTTTGCTCCGTCAGAAAAGCTCTCCAGCCGGCTTTCTCAACCATCTAGCCACTCTCAATCATAATAACAATAACAATAACGGTATATGTTTGTTTTTATTAAGACAAAGTCAAAGTCAATGGATTATATTAGATCTCATAAAGAGTAAGTAATAGTACTAGTATTTTTGATTGAATTGCAGCTGGGGGGTTCACAATCACGAGGGGCAATTCAAGATTGAAGTCTGAATTGAGTTTCACTGGTGGAGGACAAGAATGTCTTTCTCGAATATCCGAAAATGTTGTTGATTATGCATCAGCAGCAGCTGGAAATGGATCATTCCATACTAGTACCAATACCTGGGGTGGAGGCCCCGATAATAATAACAACAACAACTCAAATTCCATAGTATTTTCTTCTTCTCAAACCCAAACTAATAATAATAATAATAATAATAGTAGTAAGAAGCGTTCTAGTAGAACTGACACCAATGATGATCCCGACCTTCTTCTACATTGCCTCAATGCCCTCGAAACTCAGGTACTATCTCTTTTCACAATATTAATTCTTTCATCCACAACCACATTATTTCATTTTTAGTTACTAATTCAATATTTCTACTCCTAATTCAGTATAGTCTCCCACAAACTTCTCTGGAGATGGACCAGCTTATGCATAATATTCCCCAAGATTCCGTCCCTTGTAAAATCCGTGCCAAGCGTGGATGCGCCACTCATCCTCGTAGCATTGCTGAACGGGTAATTAATTCATTCATTACTCTACTCTTTCCTTTTTCTTTCTGCTTCTGTTTCAAAATACTACTCTCTACTGTATATAACAACTCTATTGCAATACATGTATGCAGGAGAGAAGAACTAGAATAAGTGGCAAGTTGAAGAAGTTGCAGGACCTTGTACCTAACATGGATAAGGTATAATTACCCATGCTACCAACTTTTGCTTCCTAACTTTCCTTACCTATTATTAATTCATTTGCTAGTATTTATGTTTCCTAATTTATCATCATTAAGGTAATGCACACATTAATTGGAATGTTTCAATGTAGTTGTACTTGTAGTAATGAAGTAGTTAGGTGCAATGTAGTCAAAAATACTACTAAGGATAAAAACTAGGGAAAATTACATTGAGCTCCCTTAAGTTTTCATTGAATGTCACAAACACCCTCTCTAGTTTTAAACTTGACACTCATCTCCCTTAATTAAGTTTCTAATAGACACAAACCCCCCCTTTTTGTTTAACACTGTTTGCCCACGTTAAGTTAAGAGGCTACTCATACCAATGAAAGAAAAAAAGCTACTCTACTCACAAATGAACCCCTCAATGAAGGTTGTTGAACCACTCAGTAAAGGTTGTTCTCCATAGAGAAGAAGGACAAGAAGGCAGAAATAATATTCATTTATGAATCTCGCAGTAATTTCTCCTTTTTTTTCGTCTATAACCGGTATTTAATTTCATCCCCTTTTCCTTTATCTTATTTTGGGGTTCTATATTTCAAATCCCTTATTGAGTTGGGAATTTATTGTCAGTATTGTGTTTGGGAAGATATGGTTTCGTTTTTTTATAAAACTATGGTTGTTTCAAGTGGAGATTCATACCCAAAATCATTGTCTCACAGTTGTAGATTGCTACTAAAATTTAAATTATTTGACCACTGTAGTTTGTCTCGGCAATCAGTCAAGTTCAAGATACTTATCAGCGATAATCTAGTTTATGAAACTATAGCCAACAACATGAAGTAAAGCTATTACGTATAATATAAAGGTCATGATAATAGTAAATGAGCCAGGAAAGTTGCAGGCTATAGTAGAAAAGCCATAAAAGTATATATCTAAAAGAACAAGGAATCGATGTTGATTTCATGAGAAAGAAGAATGCTAGACATGGATGGAATTGGCATAAGGAGAATGCCATAACAAGCTGGAAATGTCATTTGTGCTTCTTTGTTAATGATAACTAACGGTGTTAACCCAAGGGAGGTGATTGCTTTGTTTAAAACTAGAGGGGCTCTCTATGTTATTTAGTGAAACCTCAGGGGAGGTTAGTGCAATTTCCCCTAAAAACTATCATACATAAATAAAACAACATCTAAATCACAACATCAAACTAAGTTAATTAGACATTCATAACCATCAGTCCTTAAATACATAAATAATTCAAATCTAAGTTCATAAATAAATTCACCCACAGTTCAGACAGAGGAAGGCAGAAATGAAGGAAAAAAAAACAGCCCTTTAAAAAACCAGAAACAGCGGAAGTAAGGTCCATGTGTAACTGAAAGAAAACCTGGGTAGGCAGCAAAAGTTGAGAACATGTCGCACGCGGCGGCACACATTTGAGAACCGTAGTTCAGTTGGCGGTGGCGCAAGGAGGAACGACATCACAGAGAAGAGAGGAGACTAGACCGTGAGAGAGTAAGGGGCAAACTTTTCTTACTTTTAGTGTCCGTGTTTCAGCAAAGGAAGTGTTCAAGAAGCACAAGTGTTTTCACAGTACCAGACCAGTTTCAGAAAGGTCTGTTGCGAAACAGATGGCTCAAATTTGTGATCCTATAGTCCTGCTTCAAACTCGCGAGTTCAAACCCGCCGTGGACACACCTCCAGCAATCCTGGCTGTATGACGGCAAGGAACCATGGCCGTGGATCGTAGAATCGTCTGATACTACTCGGCGGTTCGCGATCATGACTACATTGGTTAGGCCTGGACTTGAGAGTATTATTGTAACAAACTCTTGAATTTTCATGAGTACTTGCAATATCTACTTTGATTTGTTAATCAATGGTGAATTGTTTCCCTTTAGAGGAGCCGGAGAGTATGTTTTACTGTGAATTAGAGTCTTTAATCTTGAATCTTGATGCCAAAGAGAGTGACTTGAGTTACTTTGTACTTGCCTGCTTGCTTTGAACATAGATGAATGTAAGTGATACTACAGTCCATTTTAGTGTAAATGAGCTTCTAAACGACATTTTTCTTTCTATTTTATTTAAGCTTCTACCGTCAACTTTGGATGGTAGCAGTAGCAGATAATACAGAGAATGGGTGTTTCAGCTTCATTTCTTTTCTTTCTAAAATACAAAGTCAATGATAAAATTATTCAAAATCAATTGCCAATAACACTAACAAAAGTTGTAGAAATAGTTTCAGTGGAATGATTATTCATCCATAGTATTTAACTACCATTTAAACTTAAAGTAGCTTGAAACATTATATGGAACTAGAATTTTGCTTATGCTTTCCTTTTTATTTTTCAAAGTAAGATTTATGTGCAAGAATTGAAAAATTCGACTATACAAAGAGTCAGGATCAAGTTCCAAGTTAAATTAGTTCATAATTACAGAGTAGGTAGATGGCTTTTATGCCATGAGAGTATTACCAGTAATTCAAATATTTTCTACAATAAGTATTGGAGCATCTTCAATTGAATTTATAGGATTACTCGATAACATCACATAATATGTATGTCAAACTAGTGTTTAACTGTGTATTATAGGTTGCTTAATGTTGTTTCAAAATGTGACTGTAGCAAACAAGTTATTCAGACATGCTGGATTTGGCGGTTCAACATATCAAAGGTCTTCAAACTCAAGTTCAGGTGTGTAAAGCTACCGTAGCTTCTACTGAGTAGAATATTCTTTATATATATGTATATTCCCAAATTAAAAAGAGCTTCACATGAATACAGCATTCTTAAAAATTAATATTTCATTGATAGGCTAGTACATACTACTGTTAAAAATAAAGTGTTTGCATTCTGTAATTCTTAATACTCTGTTGATCTTGACTATATCTTTTCACTACTTTGCAGAAGCTTCACGAAGACCTTGAGAATTGCACCTGCGGATGCAAACAAAGTACATAA
Protein sequence

>MS.gene90901.t1

MYRPPSSSGSSSSSSSQQQQSSISQTGLTRYGSAPSSLLNTTVDAIIGVGGSRLLPGTGQHYFSDDSTQQQQQQQQHQQQQQRSSYEGQAGGFDGSALLRQKSSPAGFLNHLATLNHNNNNNNAGGFTITRGNSRLKSELSFTGGGQECLSRISENVVDYASAAAGNGSFHTSTNTWGGGPDNNNNNNSNSIVFSSSQTQTNNNNNNNSSKKRSSRTDTNDDPDLLLHCLNALETQYSLPQTSLEMDQLMHNIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHEDLENCTCGCKQST