Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91047.t1 | XP_013454922.1 | 81.7 | 524 | 91 | 2 | 1 | 524 | 1 | 519 | 5.90E-157 | 564.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91047.t1 | Q7XJK8 | 29.0 | 272 | 160 | 8 | 6 | 266 | 2 | 251 | 6.6e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91047.t1 | A0A072USW1 | 81.7 | 524 | 91 | 2 | 1 | 524 | 1 | 519 | 4.2e-157 | 564.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene91047.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91047.t1 | MTR_7g106510 | 83.779 | 524 | 64 | 4 | 1 | 524 | 1 | 503 | 0.0 | 836 |
| MS.gene91047.t1 | MTR_4g019670 | 83.397 | 524 | 82 | 2 | 1 | 524 | 1 | 519 | 0.0 | 829 |
| MS.gene91047.t1 | MTR_3g093900 | 44.158 | 582 | 255 | 11 | 1 | 524 | 1 | 570 | 3.89e-132 | 396 |
| MS.gene91047.t1 | MTR_8g467500 | 52.344 | 256 | 118 | 1 | 13 | 268 | 13 | 264 | 5.93e-70 | 226 |
| MS.gene91047.t1 | MTR_3g466980 | 33.939 | 165 | 105 | 2 | 1 | 164 | 1 | 162 | 2.84e-24 | 101 |
| MS.gene91047.t1 | MTR_5g075380 | 32.692 | 156 | 105 | 0 | 7 | 162 | 4 | 159 | 1.32e-22 | 94.7 |
| MS.gene91047.t1 | MTR_8g036130 | 38.168 | 131 | 79 | 1 | 4 | 132 | 1 | 131 | 4.21e-22 | 95.9 |
| MS.gene91047.t1 | MTR_3g466830 | 34.667 | 150 | 97 | 1 | 6 | 154 | 2 | 151 | 1.82e-21 | 91.7 |
| MS.gene91047.t1 | MTR_4g032620 | 36.066 | 122 | 78 | 0 | 6 | 127 | 3 | 124 | 2.80e-21 | 93.2 |
| MS.gene91047.t1 | MTR_3g466890 | 31.373 | 153 | 104 | 1 | 6 | 157 | 2 | 154 | 1.61e-19 | 86.3 |
| MS.gene91047.t1 | MTR_4g031910 | 37.805 | 164 | 89 | 3 | 1 | 160 | 1 | 155 | 2.78e-19 | 87.4 |
| MS.gene91047.t1 | MTR_2g016210 | 31.034 | 145 | 99 | 1 | 7 | 150 | 4 | 148 | 6.56e-19 | 86.7 |
| MS.gene91047.t1 | MTR_3g065100 | 38.655 | 119 | 73 | 0 | 4 | 122 | 1 | 119 | 2.96e-18 | 84.7 |
| MS.gene91047.t1 | MTR_1g090710 | 32.479 | 117 | 78 | 1 | 4 | 120 | 1 | 116 | 1.18e-17 | 80.5 |
| MS.gene91047.t1 | MTR_4g032260 | 40.625 | 96 | 57 | 0 | 37 | 132 | 34 | 129 | 2.85e-17 | 79.7 |
| MS.gene91047.t1 | MTR_2g035610 | 36.066 | 122 | 78 | 0 | 4 | 125 | 1 | 122 | 6.93e-17 | 77.4 |
| MS.gene91047.t1 | MTR_5g047580 | 35.043 | 117 | 75 | 1 | 4 | 120 | 1 | 116 | 7.95e-17 | 78.2 |
| MS.gene91047.t1 | MTR_3g031240 | 29.060 | 117 | 83 | 0 | 6 | 122 | 3 | 119 | 1.04e-16 | 78.6 |
| MS.gene91047.t1 | MTR_4g028800 | 45.714 | 70 | 36 | 1 | 7 | 76 | 4 | 71 | 4.62e-16 | 73.2 |
| MS.gene91047.t1 | MTR_1g090783 | 28.276 | 145 | 103 | 1 | 6 | 150 | 2 | 145 | 1.48e-15 | 74.7 |
| MS.gene91047.t1 | MTR_3g031100 | 29.915 | 117 | 82 | 0 | 6 | 122 | 3 | 119 | 2.05e-15 | 76.3 |
| MS.gene91047.t1 | MTR_4g032290 | 31.875 | 160 | 82 | 4 | 37 | 175 | 34 | 187 | 2.12e-15 | 76.3 |
| MS.gene91047.t1 | MTR_3g466900 | 32.258 | 124 | 83 | 1 | 35 | 157 | 2 | 125 | 2.79e-15 | 73.2 |
| MS.gene91047.t1 | MTR_1g077390 | 33.913 | 115 | 75 | 1 | 6 | 120 | 3 | 116 | 3.32e-15 | 73.6 |
| MS.gene91047.t1 | MTR_1g090697 | 29.252 | 147 | 103 | 1 | 4 | 150 | 1 | 146 | 3.97e-15 | 73.2 |
| MS.gene91047.t1 | MTR_3g466930 | 33.065 | 124 | 82 | 1 | 35 | 157 | 2 | 125 | 1.67e-14 | 70.9 |
| MS.gene91047.t1 | MTR_4g063790 | 30.000 | 160 | 101 | 5 | 1 | 155 | 1 | 154 | 4.73e-14 | 70.9 |
| MS.gene91047.t1 | MTR_4g028720 | 34.899 | 149 | 93 | 2 | 4 | 149 | 1 | 148 | 6.91e-14 | 69.7 |
| MS.gene91047.t1 | MTR_1g084950 | 38.017 | 121 | 70 | 2 | 4 | 120 | 1 | 120 | 1.24e-13 | 68.9 |
| MS.gene91047.t1 | MTR_7g011950 | 32.886 | 149 | 96 | 2 | 4 | 149 | 1 | 148 | 4.88e-13 | 67.4 |
| MS.gene91047.t1 | MTR_1g077320 | 32.215 | 149 | 97 | 2 | 4 | 149 | 1 | 148 | 6.70e-13 | 67.0 |
| MS.gene91047.t1 | MTR_1g077300 | 34.400 | 125 | 77 | 2 | 6 | 126 | 3 | 126 | 1.65e-12 | 65.9 |
| MS.gene91047.t1 | MTR_3g467080 | 24.684 | 158 | 115 | 2 | 4 | 157 | 1 | 158 | 3.95e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91047.t1 | AT1G65300 | 27.985 | 268 | 164 | 7 | 6 | 264 | 2 | 249 | 4.02e-20 | 90.9 |
| MS.gene91047.t1 | AT2G40210 | 28.916 | 166 | 115 | 2 | 4 | 169 | 1 | 163 | 2.19e-19 | 90.5 |
| MS.gene91047.t1 | AT3G05860 | 30.657 | 137 | 91 | 2 | 1 | 136 | 1 | 134 | 1.39e-16 | 80.1 |
| MS.gene91047.t1 | AT3G05860 | 30.657 | 137 | 91 | 2 | 1 | 136 | 1 | 134 | 1.56e-16 | 80.1 |
| MS.gene91047.t1 | AT3G05860 | 30.657 | 137 | 91 | 2 | 1 | 136 | 1 | 134 | 3.38e-16 | 77.8 |
| MS.gene91047.t1 | AT5G26650 | 31.579 | 114 | 78 | 0 | 7 | 120 | 2 | 115 | 3.91e-16 | 80.5 |
| MS.gene91047.t1 | AT5G27960 | 31.579 | 114 | 78 | 0 | 7 | 120 | 2 | 115 | 1.24e-15 | 78.6 |
| MS.gene91047.t1 | AT1G31630 | 31.304 | 115 | 78 | 1 | 6 | 120 | 2 | 115 | 5.91e-15 | 76.6 |
| MS.gene91047.t1 | AT5G06500 | 28.082 | 146 | 104 | 1 | 4 | 149 | 1 | 145 | 6.74e-15 | 75.1 |
| MS.gene91047.t1 | AT1G22590 | 29.358 | 109 | 74 | 1 | 6 | 114 | 3 | 108 | 6.86e-15 | 72.8 |
| MS.gene91047.t1 | AT5G48670 | 36.134 | 119 | 76 | 0 | 4 | 122 | 1 | 119 | 1.02e-14 | 75.9 |
| MS.gene91047.t1 | AT1G65330 | 31.858 | 113 | 77 | 0 | 8 | 120 | 4 | 116 | 1.11e-14 | 75.1 |
| MS.gene91047.t1 | AT2G15660 | 29.487 | 156 | 103 | 5 | 40 | 194 | 30 | 179 | 2.04e-14 | 73.6 |
| MS.gene91047.t1 | AT1G31640 | 31.356 | 118 | 77 | 2 | 3 | 120 | 2 | 115 | 2.11e-14 | 75.9 |
| MS.gene91047.t1 | AT5G26630 | 33.708 | 178 | 109 | 5 | 1 | 177 | 1 | 170 | 3.69e-14 | 72.4 |
| MS.gene91047.t1 | AT2G28700 | 29.060 | 117 | 83 | 0 | 4 | 120 | 1 | 117 | 3.93e-14 | 73.9 |
| MS.gene91047.t1 | AT5G27810 | 32.184 | 87 | 59 | 0 | 34 | 120 | 3 | 89 | 9.07e-11 | 59.7 |
Find 100 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTCCTCAAGAAAATTT+TGG | 0.166377 | 7.4:+78826743 | MS.gene91047:CDS |
| TTGACTCATACTTGGTTATT+AGG | 0.193064 | 7.4:-78825731 | None:intergenic |
| TTGCCTCCTCAAGGATATTT+TGG | 0.199048 | 7.4:+78826521 | MS.gene91047:CDS |
| AGTATTATTCTCAATCAATT+TGG | 0.203967 | 7.4:-78825556 | None:intergenic |
| TTGGCTAATCAAGCCGATTT+TGG | 0.211096 | 7.4:+78826242 | MS.gene91047:CDS |
| AACAATATAGGTAGCAATAT+TGG | 0.211965 | 7.4:+78826458 | MS.gene91047:CDS |
| GATTGTCACCTGCTCCATTT+TGG | 0.265823 | 7.4:-78825622 | None:intergenic |
| GAAAGGGTTGTTCACCAAAA+TGG | 0.296295 | 7.4:+78825608 | MS.gene91047:CDS |
| AGAAAATGAAGAGACTTTAA+TGG | 0.303503 | 7.4:+78825851 | MS.gene91047:CDS |
| CCAACAACCCTTGTTAGATT+TGG | 0.312296 | 7.4:+78826118 | MS.gene91047:CDS |
| GATGGTGGTGGGGTACAATC+TGG | 0.325759 | 7.4:+78826068 | MS.gene91047:CDS |
| GAGGCATGTGCGATTGTGTT+TGG | 0.338129 | 7.4:+78825657 | MS.gene91047:CDS |
| TGTTTCTTCCTCGTGGAAAT+CGG | 0.350712 | 7.4:+78826423 | MS.gene91047:CDS |
| TATTGAAACCACTGGTCATT+TGG | 0.376977 | 7.4:-78826154 | None:intergenic |
| ACTTTGTTGACAATAATTAC+AGG | 0.379077 | 7.4:+78827044 | MS.gene91047:CDS |
| ATTTATTCTGAAGGAAATCC+AGG | 0.379085 | 7.4:-78827079 | None:intergenic |
| GTTATCAAAATCGCCAAAAT+CGG | 0.379836 | 7.4:-78826255 | None:intergenic |
| ACAATATAGGTAGCAATATT+GGG | 0.381596 | 7.4:+78826459 | MS.gene91047:CDS |
| GTTTCTTCCTCGTGGAAATC+GGG | 0.382019 | 7.4:+78826424 | MS.gene91047:CDS |
| CAAAATCTTCAAAGTTAAAT+CGG | 0.384532 | 7.4:-78826769 | None:intergenic |
| TTTGAAGATCAAGAAAACTT+TGG | 0.393915 | 7.4:+78826653 | MS.gene91047:CDS |
| TCTTCTAAAGTAAAAGATAT+TGG | 0.398866 | 7.4:-78826047 | None:intergenic |
| AGGCATGTGCGATTGTGTTT+GGG | 0.407804 | 7.4:+78825658 | MS.gene91047:CDS |
| CAATGACATTGACTCATACT+TGG | 0.420310 | 7.4:-78825739 | None:intergenic |
| GTGATACAAAGCCATCAATA+TGG | 0.420781 | 7.4:+78825685 | MS.gene91047:CDS |
| GGCGGCAATATTAATGGAGA+TGG | 0.429163 | 7.4:+78827001 | MS.gene91047:CDS |
| GAAAATGAAGAGACTTTAAT+GGG | 0.430958 | 7.4:+78825852 | MS.gene91047:CDS |
| CAAGTATGAGTCAATGTCAT+TGG | 0.431413 | 7.4:+78825740 | MS.gene91047:CDS |
| CAATCTGGGGTTAACATGTA+TGG | 0.436691 | 7.4:+78826083 | MS.gene91047:CDS |
| TTTGATAACAAATTTGATGA+TGG | 0.436904 | 7.4:+78826269 | MS.gene91047:CDS |
| GTTGGAGAAGGATTATTAAG+AGG | 0.452115 | 7.4:-78826017 | None:intergenic |
| GTAGGAGATGGCCATATTGA+TGG | 0.460403 | 7.4:-78825696 | None:intergenic |
| GGAGGTCAAAGCAACTTTCA+AGG | 0.462180 | 7.4:+78826542 | MS.gene91047:CDS |
| ATATCAACACCACCATTGCT+TGG | 0.469029 | 7.4:-78826953 | None:intergenic |
| ATGGTGGTGGGGTACAATCT+GGG | 0.479496 | 7.4:+78826069 | MS.gene91047:CDS |
| TACAGGAACAACTTCAACCC+TGG | 0.480219 | 7.4:+78827061 | MS.gene91047:CDS |
| GAAGATCAAGAAAACTTTGG+AGG | 0.480766 | 7.4:+78826656 | MS.gene91047:CDS |
| CCAAATCTAACAAGGGTTGT+TGG | 0.489048 | 7.4:-78826118 | None:intergenic |
| GATGTCTAGGCATTTAGAAA+AGG | 0.494516 | 7.4:+78825986 | MS.gene91047:CDS |
| ATCAATATGGCCATCTCCTA+CGG | 0.502373 | 7.4:+78825698 | MS.gene91047:CDS |
| TGTGCGATTGTGTTTGGGCC+AGG | 0.504658 | 7.4:+78825663 | MS.gene91047:CDS |
| ATGGTTGTTATTGAAACCAC+TGG | 0.506528 | 7.4:-78826162 | None:intergenic |
| TTTACTTTAGAAGATGGTGG+TGG | 0.508226 | 7.4:+78826056 | MS.gene91047:CDS |
| GTATCTTCATGCTACTTCCA+TGG | 0.509071 | 7.4:-78826181 | None:intergenic |
| TAATAATCCTTCTCCAACGT+TGG | 0.514500 | 7.4:+78826022 | MS.gene91047:CDS |
| ATTGATGGCTTTGTATCACC+TGG | 0.518792 | 7.4:-78825681 | None:intergenic |
| TGAGAATAATACTCAAAGAA+AGG | 0.521008 | 7.4:+78825566 | MS.gene91047:CDS |
| ATACCACCACATACAAATCA+TGG | 0.521732 | 7.4:+78826818 | MS.gene91047:CDS |
| GACAATCTTATGTGGAATTG+AGG | 0.522788 | 7.4:+78825638 | MS.gene91047:CDS |
| TTACTTTAGAAGATGGTGGT+GGG | 0.531437 | 7.4:+78826057 | MS.gene91047:CDS |
| CCTCCACTAACAGATCTTAG+TGG | 0.531606 | 7.4:+78826203 | MS.gene91047:CDS |
| ATTGGTGCCAACGTTGGAGA+AGG | 0.535543 | 7.4:-78826029 | None:intergenic |
| CTAACAGATCTTAGTGGTGG+TGG | 0.538898 | 7.4:+78826209 | MS.gene91047:CDS |
| GTTATAAGAAAAGATTGAAA+GGG | 0.540577 | 7.4:+78825592 | MS.gene91047:CDS |
| TACTTTAGAAGATGGTGGTG+GGG | 0.541086 | 7.4:+78826058 | MS.gene91047:CDS |
| TAACAAATTTGATGATGGCA+TGG | 0.546398 | 7.4:+78826274 | MS.gene91047:CDS |
| CATGATATGTTTCTTCCTCG+TGG | 0.547514 | 7.4:+78826416 | MS.gene91047:CDS |
| ATATTAATGGAGATGGGATG+CGG | 0.549478 | 7.4:+78827008 | MS.gene91047:CDS |
| CGTTATAAGAAAAGATTGAA+AGG | 0.551031 | 7.4:+78825591 | MS.gene91047:CDS |
| GCGGCAATATTAATGGAGAT+GGG | 0.556348 | 7.4:+78827002 | MS.gene91047:CDS |
| GTTGTTCACCAAAATGGAGC+AGG | 0.556851 | 7.4:+78825614 | MS.gene91047:CDS |
| TCTTCAGCCACCGTAGGAGA+TGG | 0.560949 | 7.4:-78825708 | None:intergenic |
| CCACCACTAAGATCTGTTAG+TGG | 0.562274 | 7.4:-78826206 | None:intergenic |
| TGGTGGTGGTTGTGATAACT+TGG | 0.567708 | 7.4:+78826223 | MS.gene91047:CDS |
| ACATTACAGGTAGCAATACA+AGG | 0.567975 | 7.4:+78826573 | MS.gene91047:CDS |
| AGATCACTAGAAAGATGTCT+AGG | 0.570407 | 7.4:+78825973 | MS.gene91047:CDS |
| TTTCTCGACCAAATCTAACA+AGG | 0.571412 | 7.4:-78826126 | None:intergenic |
| AATATGGCCATCTCCTACGG+TGG | 0.571701 | 7.4:+78825701 | MS.gene91047:CDS |
| AAAGATATTGGTGCCAACGT+TGG | 0.577514 | 7.4:-78826035 | None:intergenic |
| GTAGGTGTGTTGCCTCCTCA+AGG | 0.582180 | 7.4:+78826512 | MS.gene91047:CDS |
| CCAACACCATGATTTGTATG+TGG | 0.583138 | 7.4:-78826824 | None:intergenic |
| GAGCAGGTGACAATCTTATG+TGG | 0.583955 | 7.4:+78825630 | MS.gene91047:CDS |
| TTTCTTCCTCGTGGAAATCG+GGG | 0.589231 | 7.4:+78826425 | MS.gene91047:CDS |
| AACAAATTTGATGATGGCAT+GGG | 0.594149 | 7.4:+78826275 | MS.gene91047:CDS |
| TTTATTCTGAAGGAAATCCA+GGG | 0.595152 | 7.4:-78827078 | None:intergenic |
| TGGTGGTGGGGTACAATCTG+GGG | 0.599552 | 7.4:+78826070 | MS.gene91047:CDS |
| TTCTCGACCAAATCTAACAA+GGG | 0.605573 | 7.4:-78826125 | None:intergenic |
| CATGAAAATCCAAGCAATGG+TGG | 0.610991 | 7.4:+78826944 | MS.gene91047:CDS |
| CCACATGAAAATCCAAGCAA+TGG | 0.614633 | 7.4:+78826941 | MS.gene91047:CDS |
| TCACCTGAAAATTCTAGTGG+TGG | 0.615267 | 7.4:+78826305 | MS.gene91047:CDS |
| CCACATACAAATCATGGTGT+TGG | 0.616507 | 7.4:+78826824 | MS.gene91047:CDS |
| ATTAGGTCTTCAGCCACCGT+AGG | 0.620414 | 7.4:-78825714 | None:intergenic |
| ACATCACATGAAAATCATAG+TGG | 0.625105 | 7.4:+78826386 | MS.gene91047:CDS |
| CCATCACCTGAAAATTCTAG+TGG | 0.626301 | 7.4:+78826302 | MS.gene91047:CDS |
| GAAAATCCTAGTGGTGGTGT+AGG | 0.627650 | 7.4:+78826494 | MS.gene91047:CDS |
| TTCTTCCTCGTGGAAATCGG+GGG | 0.632479 | 7.4:+78826426 | MS.gene91047:CDS |
| ATGCATCAAATTGAAAACGA+AGG | 0.641960 | 7.4:+78825882 | MS.gene91047:CDS |
| AGTGGTTTCAATAACAACCA+TGG | 0.647385 | 7.4:+78826164 | MS.gene91047:CDS |
| TTCTCATTCAGATTTGCATG+TGG | 0.650408 | 7.4:-78826602 | None:intergenic |
| AACACACCTACACCACCACT+AGG | 0.650603 | 7.4:-78826500 | None:intergenic |
| CCTCCAAAATATCCTTGAGG+AGG | 0.656666 | 7.4:-78826524 | None:intergenic |
| ATGATACATGTAGCAACATG+TGG | 0.657144 | 7.4:+78826912 | MS.gene91047:CDS |
| TGACCTCCAAAATATCCTTG+AGG | 0.660910 | 7.4:-78826527 | None:intergenic |
| AAAGTTGACCAAATGACCAG+TGG | 0.671225 | 7.4:+78826146 | MS.gene91047:CDS |
| CCACTAAGATCTGTTAGTGG+AGG | 0.673960 | 7.4:-78826203 | None:intergenic |
| TCACATGAAAATCCTAGTGG+TGG | 0.674534 | 7.4:+78826488 | MS.gene91047:CDS |
| CAATCACATGAAAATCCTAG+TGG | 0.684612 | 7.4:+78826485 | MS.gene91047:CDS |
| ACAACATAGATAGCAACATG+TGG | 0.691102 | 7.4:+78826687 | MS.gene91047:CDS |
| CCACTAACAGATCTTAGTGG+TGG | 0.700550 | 7.4:+78826206 | MS.gene91047:CDS |
| ACACCATGATTTGTATGTGG+TGG | 0.720749 | 7.4:-78826821 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATTATTCTCAATCAATT+TGG | - | chr7.4:78825559-78825578 | None:intergenic | 20.0% |
| !! | CAAAATCTTCAAAGTTAAAT+CGG | - | chr7.4:78826772-78826791 | None:intergenic | 20.0% |
| !! | GTTATAAGAAAAGATTGAAA+GGG | + | chr7.4:78825592-78825611 | MS.gene91047:CDS | 20.0% |
| !!! | ACTTTTCATCAAAACAATTT+TGG | + | chr7.4:78826980-78826999 | MS.gene91047:CDS | 20.0% |
| !!! | ATATCTTTTACTTTAGAAGA+TGG | + | chr7.4:78826050-78826069 | MS.gene91047:CDS | 20.0% |
| !!! | GGGAATTTTATTAACAATAT+AGG | + | chr7.4:78826446-78826465 | MS.gene91047:CDS | 20.0% |
| !!! | TCTTCTAAAGTAAAAGATAT+TGG | - | chr7.4:78826050-78826069 | None:intergenic | 20.0% |
| !!! | TTTGATAACAAATTTGATGA+TGG | + | chr7.4:78826269-78826288 | MS.gene91047:CDS | 20.0% |
| ! | AACAATATAGGTAGCAATAT+TGG | + | chr7.4:78826458-78826477 | MS.gene91047:CDS | 25.0% |
| ! | ACAATATAGGTAGCAATATT+GGG | + | chr7.4:78826459-78826478 | MS.gene91047:CDS | 25.0% |
| ! | ACTTTGTTGACAATAATTAC+AGG | + | chr7.4:78827044-78827063 | MS.gene91047:CDS | 25.0% |
| ! | AGAAAATGAAGAGACTTTAA+TGG | + | chr7.4:78825851-78825870 | MS.gene91047:CDS | 25.0% |
| ! | CGTTATAAGAAAAGATTGAA+AGG | + | chr7.4:78825591-78825610 | MS.gene91047:CDS | 25.0% |
| ! | GAAAATGAAGAGACTTTAAT+GGG | + | chr7.4:78825852-78825871 | MS.gene91047:CDS | 25.0% |
| ! | TATCCTTCAAAAAAGTCAAT+TGG | - | chr7.4:78825791-78825810 | None:intergenic | 25.0% |
| ! | TGAGAATAATACTCAAAGAA+AGG | + | chr7.4:78825566-78825585 | MS.gene91047:CDS | 25.0% |
| ! | TTTGAAGATCAAGAAAACTT+TGG | + | chr7.4:78826653-78826672 | MS.gene91047:CDS | 25.0% |
| !! | ATACAACATGCAAATTTTAG+TGG | + | chr7.4:78826710-78826729 | MS.gene91047:CDS | 25.0% |
| !! | TGATCTTCAAAATTTTCTTG+AGG | - | chr7.4:78826644-78826663 | None:intergenic | 25.0% |
| !! | TTTCATCAAAACAATTTTGG+CGG | + | chr7.4:78826983-78827002 | MS.gene91047:CDS | 25.0% |
| !! | TTTGAAGTTCAGAAAAACTT+TGG | + | chr7.4:78826878-78826897 | MS.gene91047:CDS | 25.0% |
| !!! | ATTGACTTTTTTGAAGGATA+AGG | + | chr7.4:78825791-78825810 | MS.gene91047:CDS | 25.0% |
| !!! | TTGACTTTTTTGAAGGATAA+GGG | + | chr7.4:78825792-78825811 | MS.gene91047:CDS | 25.0% |
| !!! | TTTCTTTTTCAATCTTTGCA+AGG | - | chr7.4:78825836-78825855 | None:intergenic | 25.0% |
| ACATCACATGAAAATCATAG+TGG | + | chr7.4:78826386-78826405 | MS.gene91047:CDS | 30.0% | |
| ATGCATCAAATTGAAAACGA+AGG | + | chr7.4:78825882-78825901 | MS.gene91047:CDS | 30.0% | |
| GTTATCAAAATCGCCAAAAT+CGG | - | chr7.4:78826258-78826277 | None:intergenic | 30.0% | |
| TTGACTCATACTTGGTTATT+AGG | - | chr7.4:78825734-78825753 | None:intergenic | 30.0% | |
| ! | TCTTCAAAATTTTCTTGAGG+AGG | - | chr7.4:78826641-78826660 | None:intergenic | 30.0% |
| ! | TTGCTTCCTCAAGAAAATTT+TGG | + | chr7.4:78826743-78826762 | MS.gene91047:CDS | 30.0% |
| !! | AACAAATTTGATGATGGCAT+GGG | + | chr7.4:78826275-78826294 | MS.gene91047:CDS | 30.0% |
| !! | AATTTTGGCGGCAATATTAA+TGG | + | chr7.4:78826995-78827014 | MS.gene91047:CDS | 30.0% |
| !! | GAAGATTTTGATAACAACAC+AGG | + | chr7.4:78826782-78826801 | MS.gene91047:CDS | 30.0% |
| !! | GCAAGATTTTGATAGTATCA+TGG | + | chr7.4:78826358-78826377 | MS.gene91047:CDS | 30.0% |
| !! | TAACAAATTTGATGATGGCA+TGG | + | chr7.4:78826274-78826293 | MS.gene91047:CDS | 30.0% |
| !! | TCTTTTACTTTAGAAGATGG+TGG | + | chr7.4:78826053-78826072 | MS.gene91047:CDS | 30.0% |
| !!! | TGACCAATTGACTTTTTTGA+AGG | + | chr7.4:78825785-78825804 | MS.gene91047:CDS | 30.0% |
| ACAACATAGATAGCAACATG+TGG | + | chr7.4:78826687-78826706 | MS.gene91047:CDS | 35.0% | |
| ACATTACAGGTAGCAATACA+AGG | + | chr7.4:78826573-78826592 | MS.gene91047:CDS | 35.0% | |
| AGATCACTAGAAAGATGTCT+AGG | + | chr7.4:78825973-78825992 | MS.gene91047:CDS | 35.0% | |
| AGTGGTTTCAATAACAACCA+TGG | + | chr7.4:78826164-78826183 | MS.gene91047:CDS | 35.0% | |
| ATACCACCACATACAAATCA+TGG | + | chr7.4:78826818-78826837 | MS.gene91047:CDS | 35.0% | |
| ATATTAATGGAGATGGGATG+CGG | + | chr7.4:78827008-78827027 | MS.gene91047:CDS | 35.0% | |
| ATGATACATGTAGCAACATG+TGG | + | chr7.4:78826912-78826931 | MS.gene91047:CDS | 35.0% | |
| CAAGTATGAGTCAATGTCAT+TGG | + | chr7.4:78825740-78825759 | MS.gene91047:CDS | 35.0% | |
| CAATCACATGAAAATCCTAG+TGG | + | chr7.4:78826485-78826504 | MS.gene91047:CDS | 35.0% | |
| GAAGATCAAGAAAACTTTGG+AGG | + | chr7.4:78826656-78826675 | MS.gene91047:CDS | 35.0% | |
| GAAGTTCAGAAAAACTTTGG+AGG | + | chr7.4:78826881-78826900 | MS.gene91047:CDS | 35.0% | |
| GACAATCTTATGTGGAATTG+AGG | + | chr7.4:78825638-78825657 | MS.gene91047:CDS | 35.0% | |
| GATGTCTAGGCATTTAGAAA+AGG | + | chr7.4:78825986-78826005 | MS.gene91047:CDS | 35.0% | |
| GTGATACAAAGCCATCAATA+TGG | + | chr7.4:78825685-78825704 | MS.gene91047:CDS | 35.0% | |
| GTTGGAGAAGGATTATTAAG+AGG | - | chr7.4:78826020-78826039 | None:intergenic | 35.0% | |
| TAATAATCCTTCTCCAACGT+TGG | + | chr7.4:78826022-78826041 | MS.gene91047:CDS | 35.0% | |
| TATTGAAACCACTGGTCATT+TGG | - | chr7.4:78826157-78826176 | None:intergenic | 35.0% | |
| TTCTCATTCAGATTTGCATG+TGG | - | chr7.4:78826605-78826624 | None:intergenic | 35.0% | |
| TTCTCGACCAAATCTAACAA+GGG | - | chr7.4:78826128-78826147 | None:intergenic | 35.0% | |
| TTTCTCGACCAAATCTAACA+AGG | - | chr7.4:78826129-78826148 | None:intergenic | 35.0% | |
| ! | AAACCACCACTAGAATTTTC+AGG | - | chr7.4:78826311-78826330 | None:intergenic | 35.0% |
| ! | ATGGTTGTTATTGAAACCAC+TGG | - | chr7.4:78826165-78826184 | None:intergenic | 35.0% |
| ! | TTACTTTAGAAGATGGTGGT+GGG | + | chr7.4:78826057-78826076 | MS.gene91047:CDS | 35.0% |
| ! | TTTACTTTAGAAGATGGTGG+TGG | + | chr7.4:78826056-78826075 | MS.gene91047:CDS | 35.0% |
| !! | CAACATGCAAATTTTAGTGG+TGG | + | chr7.4:78826713-78826732 | MS.gene91047:CDS | 35.0% |
| !! | CAAGGTTTTGATGACATTAC+AGG | + | chr7.4:78826560-78826579 | MS.gene91047:CDS | 35.0% |
| !! | CAATGACATTGACTCATACT+TGG | - | chr7.4:78825742-78825761 | None:intergenic | 35.0% |
| AAAGTTGACCAAATGACCAG+TGG | + | chr7.4:78826146-78826165 | MS.gene91047:CDS | 40.0% | |
| ATATCAACACCACCATTGCT+TGG | - | chr7.4:78826956-78826975 | None:intergenic | 40.0% | |
| ATCAATATGGCCATCTCCTA+CGG | + | chr7.4:78825698-78825717 | MS.gene91047:CDS | 40.0% | |
| CATGAAAATCCAAGCAATGG+TGG | + | chr7.4:78826944-78826963 | MS.gene91047:CDS | 40.0% | |
| CATGATATGTTTCTTCCTCG+TGG | + | chr7.4:78826416-78826435 | MS.gene91047:CDS | 40.0% | |
| CCAAATCTAACAAGGGTTGT+TGG | - | chr7.4:78826121-78826140 | None:intergenic | 40.0% | |
| CCAACAACCCTTGTTAGATT+TGG | + | chr7.4:78826118-78826137 | MS.gene91047:CDS | 40.0% | |
| CCACATACAAATCATGGTGT+TGG | + | chr7.4:78826824-78826843 | MS.gene91047:CDS | 40.0% | |
| CCACATGAAAATCCAAGCAA+TGG | + | chr7.4:78826941-78826960 | MS.gene91047:CDS | 40.0% | |
| CCATCACCTGAAAATTCTAG+TGG | + | chr7.4:78826302-78826321 | MS.gene91047:CDS | 40.0% | |
| GAAAGGGTTGTTCACCAAAA+TGG | + | chr7.4:78825608-78825627 | MS.gene91047:CDS | 40.0% | |
| GCGGCAATATTAATGGAGAT+GGG | + | chr7.4:78827002-78827021 | MS.gene91047:CDS | 40.0% | |
| TCACATGAAAATCCTAGTGG+TGG | + | chr7.4:78826488-78826507 | MS.gene91047:CDS | 40.0% | |
| TCACCTGAAAATTCTAGTGG+TGG | + | chr7.4:78826305-78826324 | MS.gene91047:CDS | 40.0% | |
| TGACCTCCAAAATATCCTTG+AGG | - | chr7.4:78826530-78826549 | None:intergenic | 40.0% | |
| TGTTTCTTCCTCGTGGAAAT+CGG | + | chr7.4:78826423-78826442 | MS.gene91047:CDS | 40.0% | |
| ! | ACACCATGATTTGTATGTGG+TGG | - | chr7.4:78826824-78826843 | None:intergenic | 40.0% |
| ! | CAATCTGGGGTTAACATGTA+TGG | + | chr7.4:78826083-78826102 | MS.gene91047:CDS | 40.0% |
| ! | CCAACACCATGATTTGTATG+TGG | - | chr7.4:78826827-78826846 | None:intergenic | 40.0% |
| ! | CCATTGCTTGGATTTTCATG+TGG | - | chr7.4:78826944-78826963 | None:intergenic | 40.0% |
| ! | CGGTCTCCAAAATTTTCTTG+AGG | - | chr7.4:78826752-78826771 | None:intergenic | 40.0% |
| ! | GTATCTTCATGCTACTTCCA+TGG | - | chr7.4:78826184-78826203 | None:intergenic | 40.0% |
| ! | TACTTTAGAAGATGGTGGTG+GGG | + | chr7.4:78826058-78826077 | MS.gene91047:CDS | 40.0% |
| ! | TTGCCTCCTCAAGGATATTT+TGG | + | chr7.4:78826521-78826540 | MS.gene91047:CDS | 40.0% |
| ! | TTGCTTGGATTTTCATGTGG+AGG | - | chr7.4:78826941-78826960 | None:intergenic | 40.0% |
| !! | AAAGATATTGGTGCCAACGT+TGG | - | chr7.4:78826038-78826057 | None:intergenic | 40.0% |
| !! | ATTGATGGCTTTGTATCACC+TGG | - | chr7.4:78825684-78825703 | None:intergenic | 40.0% |
| !! | TTGGCTAATCAAGCCGATTT+TGG | + | chr7.4:78826242-78826261 | MS.gene91047:CDS | 40.0% |
| !!! | CCACTAGAATTTTCAGGTGA+TGG | - | chr7.4:78826305-78826324 | None:intergenic | 40.0% |
| AGGCATGTGCGATTGTGTTT+GGG | + | chr7.4:78825658-78825677 | MS.gene91047:CDS | 45.0% | |
| CCACCACTAAGATCTGTTAG+TGG | - | chr7.4:78826209-78826228 | None:intergenic | 45.0% | |
| CCACTAACAGATCTTAGTGG+TGG | + | chr7.4:78826206-78826225 | MS.gene91047:CDS | 45.0% | |
| CCACTAAGATCTGTTAGTGG+AGG | - | chr7.4:78826206-78826225 | None:intergenic | 45.0% | |
| CCTCCAAAATATCCTTGAGG+AGG | - | chr7.4:78826527-78826546 | None:intergenic | 45.0% | |
| CCTCCACTAACAGATCTTAG+TGG | + | chr7.4:78826203-78826222 | MS.gene91047:CDS | 45.0% | |
| CTAACAGATCTTAGTGGTGG+TGG | + | chr7.4:78826209-78826228 | MS.gene91047:CDS | 45.0% | |
| GAGCAGGTGACAATCTTATG+TGG | + | chr7.4:78825630-78825649 | MS.gene91047:CDS | 45.0% | |
| GGAGGTCAAAGCAACTTTCA+AGG | + | chr7.4:78826542-78826561 | MS.gene91047:CDS | 45.0% | |
| GGCGGCAATATTAATGGAGA+TGG | + | chr7.4:78827001-78827020 | MS.gene91047:CDS | 45.0% | |
| GTAGGAGATGGCCATATTGA+TGG | - | chr7.4:78825699-78825718 | None:intergenic | 45.0% | |
| GTTGTTCACCAAAATGGAGC+AGG | + | chr7.4:78825614-78825633 | MS.gene91047:CDS | 45.0% | |
| GTTTCTTCCTCGTGGAAATC+GGG | + | chr7.4:78826424-78826443 | MS.gene91047:CDS | 45.0% | |
| TACAGGAACAACTTCAACCC+TGG | + | chr7.4:78827061-78827080 | MS.gene91047:CDS | 45.0% | |
| TTTCTTCCTCGTGGAAATCG+GGG | + | chr7.4:78826425-78826444 | MS.gene91047:CDS | 45.0% | |
| ! | GAAAATCCTAGTGGTGGTGT+AGG | + | chr7.4:78826494-78826513 | MS.gene91047:CDS | 45.0% |
| ! | GATTGTCACCTGCTCCATTT+TGG | - | chr7.4:78825625-78825644 | None:intergenic | 45.0% |
| !! | CCTCCTCAAGGATATTTTGG+AGG | + | chr7.4:78826524-78826543 | MS.gene91047:CDS | 45.0% |
| !! | TGGTGGTGGTTGTGATAACT+TGG | + | chr7.4:78826223-78826242 | MS.gene91047:CDS | 45.0% |
| AAATTCCCCCGATTTCCACG+AGG | - | chr7.4:78826434-78826453 | None:intergenic | 50.0% | |
| AACACACCTACACCACCACT+AGG | - | chr7.4:78826503-78826522 | None:intergenic | 50.0% | |
| AATATGGCCATCTCCTACGG+TGG | + | chr7.4:78825701-78825720 | MS.gene91047:CDS | 50.0% | |
| ATTAGGTCTTCAGCCACCGT+AGG | - | chr7.4:78825717-78825736 | None:intergenic | 50.0% | |
| GAGGCATGTGCGATTGTGTT+TGG | + | chr7.4:78825657-78825676 | MS.gene91047:CDS | 50.0% | |
| TTCTTCCTCGTGGAAATCGG+GGG | + | chr7.4:78826426-78826445 | MS.gene91047:CDS | 50.0% | |
| !! | ATGGTGGTGGGGTACAATCT+GGG | + | chr7.4:78826069-78826088 | MS.gene91047:CDS | 50.0% |
| !! | ATTGGTGCCAACGTTGGAGA+AGG | - | chr7.4:78826032-78826051 | None:intergenic | 50.0% |
| GTAGGTGTGTTGCCTCCTCA+AGG | + | chr7.4:78826512-78826531 | MS.gene91047:CDS | 55.0% | |
| TCTTCAGCCACCGTAGGAGA+TGG | - | chr7.4:78825711-78825730 | None:intergenic | 55.0% | |
| TGTGCGATTGTGTTTGGGCC+AGG | + | chr7.4:78825663-78825682 | MS.gene91047:CDS | 55.0% | |
| !! | GATGGTGGTGGGGTACAATC+TGG | + | chr7.4:78826068-78826087 | MS.gene91047:CDS | 55.0% |
| !! | TGGTGGTGGGGTACAATCTG+GGG | + | chr7.4:78826070-78826089 | MS.gene91047:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 78825525 | 78827099 | 78825525 | ID=MS.gene91047 |
| chr7.4 | mRNA | 78825525 | 78827099 | 78825525 | ID=MS.gene91047.t1;Parent=MS.gene91047 |
| chr7.4 | exon | 78825525 | 78827099 | 78825525 | ID=MS.gene91047.t1.exon1;Parent=MS.gene91047.t1 |
| chr7.4 | CDS | 78825525 | 78827099 | 78825525 | ID=cds.MS.gene91047.t1;Parent=MS.gene91047.t1 |
| Gene Sequence |
| Protein sequence |
