Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91050.t1 | XP_013454922.1 | 84.2 | 524 | 78 | 2 | 1 | 524 | 1 | 519 | 1.80E-169 | 605.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91050.t1 | Q7XJK8 | 29.8 | 258 | 161 | 7 | 6 | 252 | 2 | 250 | 5.1e-16 | 87.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91050.t1 | A0A072USW1 | 84.2 | 524 | 78 | 2 | 1 | 524 | 1 | 519 | 1.3e-169 | 605.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene91050.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91050.t1 | MTR_7g106510 | 83.779 | 524 | 64 | 4 | 1 | 524 | 1 | 503 | 0.0 | 832 |
| MS.gene91050.t1 | MTR_4g019670 | 83.397 | 524 | 82 | 2 | 1 | 524 | 1 | 519 | 0.0 | 827 |
| MS.gene91050.t1 | MTR_3g093900 | 44.502 | 582 | 253 | 12 | 1 | 524 | 1 | 570 | 3.14e-134 | 401 |
| MS.gene91050.t1 | MTR_8g467500 | 53.516 | 256 | 115 | 1 | 13 | 268 | 13 | 264 | 2.00e-70 | 227 |
| MS.gene91050.t1 | MTR_3g466980 | 33.333 | 165 | 106 | 2 | 1 | 164 | 1 | 162 | 3.73e-24 | 100 |
| MS.gene91050.t1 | MTR_5g075380 | 32.051 | 156 | 106 | 0 | 7 | 162 | 4 | 159 | 1.71e-22 | 94.7 |
| MS.gene91050.t1 | MTR_8g036130 | 37.405 | 131 | 80 | 1 | 4 | 132 | 1 | 131 | 6.49e-22 | 95.5 |
| MS.gene91050.t1 | MTR_3g466830 | 34.000 | 150 | 98 | 1 | 6 | 154 | 2 | 151 | 1.33e-21 | 92.0 |
| MS.gene91050.t1 | MTR_4g032620 | 35.246 | 122 | 79 | 0 | 6 | 127 | 3 | 124 | 3.67e-21 | 92.8 |
| MS.gene91050.t1 | MTR_3g466890 | 30.719 | 153 | 105 | 1 | 6 | 157 | 2 | 154 | 1.37e-19 | 86.3 |
| MS.gene91050.t1 | MTR_4g031910 | 37.805 | 164 | 89 | 3 | 1 | 160 | 1 | 155 | 3.78e-19 | 87.0 |
| MS.gene91050.t1 | MTR_2g016210 | 30.345 | 145 | 100 | 1 | 7 | 150 | 4 | 148 | 1.06e-18 | 85.9 |
| MS.gene91050.t1 | MTR_3g065100 | 38.462 | 117 | 72 | 0 | 6 | 122 | 3 | 119 | 4.37e-18 | 84.3 |
| MS.gene91050.t1 | MTR_1g090710 | 32.174 | 115 | 77 | 1 | 6 | 120 | 3 | 116 | 1.21e-17 | 80.5 |
| MS.gene91050.t1 | MTR_4g032260 | 39.583 | 96 | 58 | 0 | 37 | 132 | 34 | 129 | 5.19e-17 | 79.0 |
| MS.gene91050.t1 | MTR_5g047580 | 35.833 | 120 | 73 | 2 | 1 | 120 | 1 | 116 | 6.06e-17 | 78.6 |
| MS.gene91050.t1 | MTR_2g035610 | 36.800 | 125 | 76 | 1 | 1 | 125 | 1 | 122 | 1.14e-16 | 76.6 |
| MS.gene91050.t1 | MTR_3g031240 | 28.205 | 117 | 84 | 0 | 6 | 122 | 3 | 119 | 1.95e-16 | 77.8 |
| MS.gene91050.t1 | MTR_4g032290 | 31.875 | 160 | 82 | 4 | 37 | 175 | 34 | 187 | 3.03e-16 | 78.6 |
| MS.gene91050.t1 | MTR_4g028800 | 44.286 | 70 | 37 | 1 | 7 | 76 | 4 | 71 | 7.60e-16 | 72.8 |
| MS.gene91050.t1 | MTR_4g063790 | 27.742 | 155 | 104 | 3 | 6 | 155 | 3 | 154 | 1.05e-15 | 75.5 |
| MS.gene91050.t1 | MTR_1g090783 | 27.586 | 145 | 104 | 1 | 6 | 150 | 2 | 145 | 1.15e-15 | 74.7 |
| MS.gene91050.t1 | MTR_3g031100 | 29.060 | 117 | 83 | 0 | 6 | 122 | 3 | 119 | 2.74e-15 | 75.9 |
| MS.gene91050.t1 | MTR_3g466900 | 31.452 | 124 | 84 | 1 | 35 | 157 | 2 | 125 | 2.79e-15 | 73.2 |
| MS.gene91050.t1 | MTR_1g077390 | 33.043 | 115 | 76 | 1 | 6 | 120 | 3 | 116 | 3.07e-15 | 73.6 |
| MS.gene91050.t1 | MTR_3g466930 | 32.258 | 124 | 83 | 1 | 35 | 157 | 2 | 125 | 3.29e-15 | 72.8 |
| MS.gene91050.t1 | MTR_1g090697 | 30.000 | 150 | 101 | 2 | 1 | 150 | 1 | 146 | 4.25e-15 | 73.2 |
| MS.gene91050.t1 | MTR_4g028720 | 34.694 | 147 | 92 | 2 | 6 | 149 | 3 | 148 | 8.53e-14 | 69.7 |
| MS.gene91050.t1 | MTR_1g084950 | 37.815 | 119 | 69 | 2 | 6 | 120 | 3 | 120 | 1.33e-13 | 68.9 |
| MS.gene91050.t1 | MTR_1g077320 | 32.895 | 152 | 95 | 3 | 1 | 149 | 1 | 148 | 5.85e-13 | 67.4 |
| MS.gene91050.t1 | MTR_7g011950 | 32.653 | 147 | 95 | 2 | 6 | 149 | 3 | 148 | 6.03e-13 | 67.0 |
| MS.gene91050.t1 | MTR_1g077300 | 28.834 | 163 | 104 | 3 | 6 | 167 | 3 | 154 | 1.12e-12 | 66.2 |
| MS.gene91050.t1 | MTR_3g467080 | 24.359 | 156 | 114 | 2 | 6 | 157 | 3 | 158 | 4.70e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91050.t1 | AT2G40210 | 27.933 | 179 | 124 | 3 | 4 | 182 | 1 | 174 | 4.22e-20 | 92.4 |
| MS.gene91050.t1 | AT1G65300 | 36.522 | 115 | 73 | 0 | 6 | 120 | 2 | 116 | 5.89e-20 | 90.5 |
| MS.gene91050.t1 | AT3G05860 | 31.387 | 137 | 90 | 2 | 1 | 136 | 1 | 134 | 7.46e-17 | 80.9 |
| MS.gene91050.t1 | AT3G05860 | 31.387 | 137 | 90 | 2 | 1 | 136 | 1 | 134 | 9.05e-17 | 80.9 |
| MS.gene91050.t1 | AT3G05860 | 31.387 | 137 | 90 | 2 | 1 | 136 | 1 | 134 | 2.04e-16 | 78.6 |
| MS.gene91050.t1 | AT5G26650 | 31.579 | 114 | 78 | 0 | 7 | 120 | 2 | 115 | 3.91e-16 | 80.5 |
| MS.gene91050.t1 | AT5G27960 | 31.579 | 114 | 78 | 0 | 7 | 120 | 2 | 115 | 1.33e-15 | 78.2 |
| MS.gene91050.t1 | AT1G31630 | 32.174 | 115 | 77 | 1 | 6 | 120 | 2 | 115 | 3.14e-15 | 77.4 |
| MS.gene91050.t1 | AT5G06500 | 29.167 | 144 | 101 | 1 | 6 | 149 | 3 | 145 | 5.48e-15 | 75.1 |
| MS.gene91050.t1 | AT1G65330 | 32.743 | 113 | 76 | 0 | 8 | 120 | 4 | 116 | 5.95e-15 | 75.9 |
| MS.gene91050.t1 | AT1G22590 | 28.440 | 109 | 75 | 1 | 6 | 114 | 3 | 108 | 1.12e-14 | 72.4 |
| MS.gene91050.t1 | AT2G15660 | 30.058 | 173 | 100 | 7 | 5 | 171 | 3 | 160 | 1.64e-14 | 73.9 |
| MS.gene91050.t1 | AT1G31640 | 31.304 | 115 | 78 | 1 | 6 | 120 | 2 | 115 | 1.69e-14 | 76.3 |
| MS.gene91050.t1 | AT5G48670 | 35.897 | 117 | 75 | 0 | 6 | 122 | 3 | 119 | 1.91e-14 | 74.7 |
| MS.gene91050.t1 | AT2G28700 | 29.915 | 117 | 82 | 0 | 4 | 120 | 1 | 117 | 2.40e-14 | 74.7 |
| MS.gene91050.t1 | AT5G26630 | 32.212 | 208 | 121 | 6 | 1 | 199 | 1 | 197 | 7.59e-14 | 71.2 |
Find 104 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTCCTCAAGAAAATTT+TGG | 0.166377 | 7.4:+78719720 | MS.gene91050:CDS |
| TTGACTCATACTTGGTTATT+AGG | 0.193064 | 7.4:-78718708 | None:intergenic |
| TTGCCTCCTCAAGGATATTT+TGG | 0.199048 | 7.4:+78719498 | MS.gene91050:CDS |
| AGTATTATTCTCAATCAATT+TGG | 0.203967 | 7.4:-78718533 | None:intergenic |
| AACTTTGGCGGCAATATTAA+TGG | 0.210065 | 7.4:+78719972 | MS.gene91050:CDS |
| TTGGCTAATCAAGCCGATTT+TGG | 0.211096 | 7.4:+78719219 | MS.gene91050:CDS |
| AACAATATAGGTAGCAATAT+TGG | 0.211965 | 7.4:+78719435 | MS.gene91050:CDS |
| CAAAATCTTCAAAGTTAAAT+TGG | 0.246957 | 7.4:-78719746 | None:intergenic |
| GATTGTCACCTGCTCCATTT+TGG | 0.265823 | 7.4:-78718599 | None:intergenic |
| GAAAGGGTTGTTCACCAAAA+TGG | 0.296295 | 7.4:+78718585 | MS.gene91050:CDS |
| GATGGTGATGGGGTACATTC+TGG | 0.296453 | 7.4:+78719045 | MS.gene91050:CDS |
| CCAACAACCCTTGTTAGATT+TGG | 0.298734 | 7.4:+78719095 | MS.gene91050:CDS |
| AGAAAATGAAGAGACTTTAA+TGG | 0.303503 | 7.4:+78718828 | MS.gene91050:CDS |
| GAGGCATGTGCGGTTGTGTT+TGG | 0.344211 | 7.4:+78718634 | MS.gene91050:CDS |
| GTTATCAAAATTGCCAAAAT+CGG | 0.349719 | 7.4:-78719232 | None:intergenic |
| TTTGAAGTTCACAGAAACTT+TGG | 0.364250 | 7.4:+78719855 | MS.gene91050:CDS |
| TGTTTCTTCCTCATGGAAAT+CGG | 0.364437 | 7.4:+78719400 | MS.gene91050:CDS |
| ACTTTGTTGACAATAATTAC+AGG | 0.379077 | 7.4:+78720021 | MS.gene91050:CDS |
| ACAATATAGGTAGCAATATT+GGG | 0.381596 | 7.4:+78719436 | MS.gene91050:CDS |
| AGGCATGTGCGGTTGTGTTT+GGG | 0.389221 | 7.4:+78718635 | MS.gene91050:CDS |
| GTGATACAAAACCATCAATA+TGG | 0.392745 | 7.4:+78718662 | MS.gene91050:CDS |
| TTTGATGATCAAGAAAACTT+TGG | 0.393915 | 7.4:+78719630 | MS.gene91050:CDS |
| TCTTCTAAAGTAAAAGATAT+TGG | 0.398866 | 7.4:-78719024 | None:intergenic |
| GTAGGAGATGGCCATATTGA+TGG | 0.410732 | 7.4:-78718673 | None:intergenic |
| GTTTCTTCCTCATGGAAATC+GGG | 0.417845 | 7.4:+78719401 | MS.gene91050:CDS |
| CAATGACATTGACTCATACT+TGG | 0.420310 | 7.4:-78718716 | None:intergenic |
| CATGATATGTTTCTTCCTCA+TGG | 0.427152 | 7.4:+78719393 | MS.gene91050:CDS |
| GAAAATGAAGAGACTTTAAT+GGG | 0.430958 | 7.4:+78718829 | MS.gene91050:CDS |
| CAAGTATGAGTCAATGTCAT+TGG | 0.431413 | 7.4:+78718717 | MS.gene91050:CDS |
| ATGGTGATGGGGTACATTCT+GGG | 0.432610 | 7.4:+78719046 | MS.gene91050:CDS |
| CATTCTGGGGTTAACATGTA+TGG | 0.436691 | 7.4:+78719060 | MS.gene91050:CDS |
| GGCGGCAATATTAATGGAGA+TGG | 0.442349 | 7.4:+78719978 | MS.gene91050:CDS |
| TGTGCGGTTGTGTTTGGGCC+AGG | 0.446264 | 7.4:+78718640 | MS.gene91050:CDS |
| CCAAATCTAACAAGGGTTGT+TGG | 0.460158 | 7.4:-78719095 | None:intergenic |
| GGAGGTCAAAGCAACTTTCA+AGG | 0.462180 | 7.4:+78719519 | MS.gene91050:CDS |
| GATGATCAAGAAAACTTTGG+AGG | 0.463709 | 7.4:+78719633 | MS.gene91050:CDS |
| ATATCAACACCACCATTGCT+TGG | 0.469029 | 7.4:-78719930 | None:intergenic |
| TACAGGAACAACTTCAACCC+TGG | 0.480219 | 7.4:+78720038 | MS.gene91050:CDS |
| TTTCATCAAAACAACTTTGG+CGG | 0.485753 | 7.4:+78719960 | MS.gene91050:CDS |
| GTTGGAGGAGGATTATTAAG+AGG | 0.490332 | 7.4:-78718994 | None:intergenic |
| GATGTCTAGGCATTTAGAAA+AGG | 0.494516 | 7.4:+78718963 | MS.gene91050:CDS |
| ATCAATATGGCCATCTCCTA+CGG | 0.501169 | 7.4:+78718675 | MS.gene91050:CDS |
| TTTACTTTAGAAGATGGTGA+TGG | 0.506036 | 7.4:+78719033 | MS.gene91050:CDS |
| ATGGTTGTTATTGAAACCAC+TGG | 0.506528 | 7.4:-78719139 | None:intergenic |
| TTACTTTAGAAGATGGTGAT+GGG | 0.515841 | 7.4:+78719034 | MS.gene91050:CDS |
| GATATTGGTGCCAACGTTGG+AGG | 0.517309 | 7.4:-78719009 | None:intergenic |
| TGAGAATAATACTCAAAGAA+AGG | 0.521008 | 7.4:+78718543 | MS.gene91050:CDS |
| ATACCACCACATACAAATCA+TGG | 0.521732 | 7.4:+78719795 | MS.gene91050:CDS |
| GACAATCTTATGTGGAATTG+AGG | 0.522788 | 7.4:+78718615 | MS.gene91050:CDS |
| GTATCTCCATGCTACTTCCA+TGG | 0.531474 | 7.4:-78719158 | None:intergenic |
| CCTCCACTAACAGATCTTAG+TGG | 0.531606 | 7.4:+78719180 | MS.gene91050:CDS |
| ATTGGTGCCAACGTTGGAGG+AGG | 0.533160 | 7.4:-78719006 | None:intergenic |
| CTAACAGATCTTAGTGGTGG+TGG | 0.538898 | 7.4:+78719186 | MS.gene91050:CDS |
| GTTATAAGAAAAGATTGAAA+GGG | 0.540577 | 7.4:+78718569 | MS.gene91050:CDS |
| AACAACTTTGATGGTGGCAT+GGG | 0.547295 | 7.4:+78719252 | MS.gene91050:CDS |
| ATATTAATGGAGATGGGATG+CGG | 0.549478 | 7.4:+78719985 | MS.gene91050:CDS |
| CGTTATAAGAAAAGATTGAA+AGG | 0.551031 | 7.4:+78718568 | MS.gene91050:CDS |
| GAAGTTCACAGAAACTTTGG+AGG | 0.552988 | 7.4:+78719858 | MS.gene91050:CDS |
| GCGGCAATATTAATGGAGAT+GGG | 0.556348 | 7.4:+78719979 | MS.gene91050:CDS |
| GTTGTTCACCAAAATGGAGC+AGG | 0.556851 | 7.4:+78718591 | MS.gene91050:CDS |
| TTTGATAACAACTTTGATGG+TGG | 0.557716 | 7.4:+78719246 | MS.gene91050:CDS |
| TCTTCAGCCACCGTAGGAGA+TGG | 0.560949 | 7.4:-78718685 | None:intergenic |
| CCACCACTAAGATCTGTTAG+TGG | 0.562274 | 7.4:-78719183 | None:intergenic |
| TGGTGGTGGTTGTGATAACT+TGG | 0.567708 | 7.4:+78719200 | MS.gene91050:CDS |
| ACATTACAGGTAGCAATACA+AGG | 0.567975 | 7.4:+78719550 | MS.gene91050:CDS |
| AGATCACTAGAAAGATGTCT+AGG | 0.570407 | 7.4:+78718950 | MS.gene91050:CDS |
| AATATGGCCATCTCCTACGG+TGG | 0.571701 | 7.4:+78718678 | MS.gene91050:CDS |
| TTTCTCAACCAAATCTAACA+AGG | 0.573944 | 7.4:-78719103 | None:intergenic |
| TAATAATCCTCCTCCAACGT+TGG | 0.577508 | 7.4:+78718999 | MS.gene91050:CDS |
| AAAGATATTGGTGCCAACGT+TGG | 0.577514 | 7.4:-78719012 | None:intergenic |
| GTAGGTGTGTTGCCTCCTCA+AGG | 0.582180 | 7.4:+78719489 | MS.gene91050:CDS |
| TACTTTAGAAGATGGTGATG+GGG | 0.582286 | 7.4:+78719035 | MS.gene91050:CDS |
| CCAACACCATGATTTGTATG+TGG | 0.583138 | 7.4:-78719801 | None:intergenic |
| GAGCAGGTGACAATCTTATG+TGG | 0.583955 | 7.4:+78718607 | MS.gene91050:CDS |
| TTACCTGAAAATTCTAGTGG+TGG | 0.586250 | 7.4:+78719282 | MS.gene91050:CDS |
| TAACAACTTTGATGGTGGCA+TGG | 0.586911 | 7.4:+78719251 | MS.gene91050:CDS |
| TGGTGATGGGGTACATTCTG+GGG | 0.588241 | 7.4:+78719047 | MS.gene91050:CDS |
| TAACAACCATGGAAGTAGCA+TGG | 0.590557 | 7.4:+78719152 | MS.gene91050:CDS |
| TTTATTCTGAAGGAAATCCA+GGG | 0.595152 | 7.4:-78720055 | None:intergenic |
| TTTCTTCCTCATGGAAATCG+GGG | 0.609048 | 7.4:+78719402 | MS.gene91050:CDS |
| TTCTCAACCAAATCTAACAA+GGG | 0.610146 | 7.4:-78719102 | None:intergenic |
| CATGAAAATCCAAGCAATGG+TGG | 0.610991 | 7.4:+78719921 | MS.gene91050:CDS |
| CCACATGAAAATCCAAGCAA+TGG | 0.614633 | 7.4:+78719918 | MS.gene91050:CDS |
| CCACATACAAATCATGGTGT+TGG | 0.616507 | 7.4:+78719801 | MS.gene91050:CDS |
| ATTAGGTCTTCAGCCACCGT+AGG | 0.620414 | 7.4:-78718691 | None:intergenic |
| GAAAATCCTAGTGGTGGTGT+AGG | 0.627650 | 7.4:+78719471 | MS.gene91050:CDS |
| CCATTACCTGAAAATTCTAG+TGG | 0.633823 | 7.4:+78719279 | MS.gene91050:CDS |
| TCATCACATGAAAATCATAG+TGG | 0.635133 | 7.4:+78719363 | MS.gene91050:CDS |
| ATGCATCAAATTGAAAACGA+AGG | 0.641960 | 7.4:+78718859 | MS.gene91050:CDS |
| AAAGTTGATCAAATGACCAG+TGG | 0.646800 | 7.4:+78719123 | MS.gene91050:CDS |
| AGTGGTTTCAATAACAACCA+TGG | 0.647385 | 7.4:+78719141 | MS.gene91050:CDS |
| TTCTCATTCAGATTTGCATG+TGG | 0.650408 | 7.4:-78719579 | None:intergenic |
| AACACACCTACACCACCACT+AGG | 0.650603 | 7.4:-78719477 | None:intergenic |
| TTCTTCCTCATGGAAATCGG+GGG | 0.655717 | 7.4:+78719403 | MS.gene91050:CDS |
| CCTCCAAAATATCCTTGAGG+AGG | 0.656666 | 7.4:-78719501 | None:intergenic |
| ATGATACATGTAGCAACATG+TGG | 0.657144 | 7.4:+78719889 | MS.gene91050:CDS |
| ATGTGGAATTGAGGCATGTG+CGG | 0.658684 | 7.4:+78718624 | MS.gene91050:CDS |
| TGACCTCCAAAATATCCTTG+AGG | 0.660910 | 7.4:-78719504 | None:intergenic |
| CCACTAAGATCTGTTAGTGG+AGG | 0.673960 | 7.4:-78719180 | None:intergenic |
| TCACATGAAAATCCTAGTGG+TGG | 0.674534 | 7.4:+78719465 | MS.gene91050:CDS |
| ACAACATAGATAGCAGCATG+TGG | 0.675578 | 7.4:+78719664 | MS.gene91050:CDS |
| CAATCACATGAAAATCCTAG+TGG | 0.684612 | 7.4:+78719462 | MS.gene91050:CDS |
| CCACTAACAGATCTTAGTGG+TGG | 0.700550 | 7.4:+78719183 | MS.gene91050:CDS |
| ACACCATGATTTGTATGTGG+TGG | 0.720749 | 7.4:-78719798 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATTATTCTCAATCAATT+TGG | - | chr7.4:78718536-78718555 | None:intergenic | 20.0% |
| !! | CAAAATCTTCAAAGTTAAAT+TGG | - | chr7.4:78719749-78719768 | None:intergenic | 20.0% |
| !! | GTTATAAGAAAAGATTGAAA+GGG | + | chr7.4:78718569-78718588 | MS.gene91050:CDS | 20.0% |
| !!! | AATTTTGATAACAACTTTGA+TGG | + | chr7.4:78719243-78719262 | MS.gene91050:CDS | 20.0% |
| !!! | ATATCTTTTACTTTAGAAGA+TGG | + | chr7.4:78719027-78719046 | MS.gene91050:CDS | 20.0% |
| !!! | TCTTCTAAAGTAAAAGATAT+TGG | - | chr7.4:78719027-78719046 | None:intergenic | 20.0% |
| ! | AACAATATAGGTAGCAATAT+TGG | + | chr7.4:78719435-78719454 | MS.gene91050:CDS | 25.0% |
| ! | ACAATATAGGTAGCAATATT+GGG | + | chr7.4:78719436-78719455 | MS.gene91050:CDS | 25.0% |
| ! | ACTTTGTTGACAATAATTAC+AGG | + | chr7.4:78720021-78720040 | MS.gene91050:CDS | 25.0% |
| ! | AGAAAATGAAGAGACTTTAA+TGG | + | chr7.4:78718828-78718847 | MS.gene91050:CDS | 25.0% |
| ! | CGTTATAAGAAAAGATTGAA+AGG | + | chr7.4:78718568-78718587 | MS.gene91050:CDS | 25.0% |
| ! | GAAAATGAAGAGACTTTAAT+GGG | + | chr7.4:78718829-78718848 | MS.gene91050:CDS | 25.0% |
| ! | GTTATCAAAATTGCCAAAAT+CGG | - | chr7.4:78719235-78719254 | None:intergenic | 25.0% |
| ! | TATCCTTCAAAAAAGTCAAT+TGG | - | chr7.4:78718768-78718787 | None:intergenic | 25.0% |
| ! | TGAGAATAATACTCAAAGAA+AGG | + | chr7.4:78718543-78718562 | MS.gene91050:CDS | 25.0% |
| !! | ACTTTTCATCAAAACAACTT+TGG | + | chr7.4:78719957-78719976 | MS.gene91050:CDS | 25.0% |
| !! | ATACAACATGCAAATTTTAG+TGG | + | chr7.4:78719687-78719706 | MS.gene91050:CDS | 25.0% |
| !! | GGGCATTTTATTAACAATAT+AGG | + | chr7.4:78719423-78719442 | MS.gene91050:CDS | 25.0% |
| !! | TGATCATCAAAATTTTCTTG+AGG | - | chr7.4:78719621-78719640 | None:intergenic | 25.0% |
| !! | TTTGATGATCAAGAAAACTT+TGG | + | chr7.4:78719630-78719649 | MS.gene91050:CDS | 25.0% |
| !!! | ATTGACTTTTTTGAAGGATA+AGG | + | chr7.4:78718768-78718787 | MS.gene91050:CDS | 25.0% |
| !!! | TTGACTTTTTTGAAGGATAA+GGG | + | chr7.4:78718769-78718788 | MS.gene91050:CDS | 25.0% |
| ATGCATCAAATTGAAAACGA+AGG | + | chr7.4:78718859-78718878 | MS.gene91050:CDS | 30.0% | |
| GTGATACAAAACCATCAATA+TGG | + | chr7.4:78718662-78718681 | MS.gene91050:CDS | 30.0% | |
| TCATCACATGAAAATCATAG+TGG | + | chr7.4:78719363-78719382 | MS.gene91050:CDS | 30.0% | |
| TTCTCAACCAAATCTAACAA+GGG | - | chr7.4:78719105-78719124 | None:intergenic | 30.0% | |
| TTGACTCATACTTGGTTATT+AGG | - | chr7.4:78718711-78718730 | None:intergenic | 30.0% | |
| TTTCATCAAAACAACTTTGG+CGG | + | chr7.4:78719960-78719979 | MS.gene91050:CDS | 30.0% | |
| TTTCTCAACCAAATCTAACA+AGG | - | chr7.4:78719106-78719125 | None:intergenic | 30.0% | |
| ! | TCATCAAAATTTTCTTGAGG+AGG | - | chr7.4:78719618-78719637 | None:intergenic | 30.0% |
| ! | TTACTTTAGAAGATGGTGAT+GGG | + | chr7.4:78719034-78719053 | MS.gene91050:CDS | 30.0% |
| ! | TTGCTTCCTCAAGAAAATTT+TGG | + | chr7.4:78719720-78719739 | MS.gene91050:CDS | 30.0% |
| ! | TTTACTTTAGAAGATGGTGA+TGG | + | chr7.4:78719033-78719052 | MS.gene91050:CDS | 30.0% |
| ! | TTTGAAGTTCACAGAAACTT+TGG | + | chr7.4:78719855-78719874 | MS.gene91050:CDS | 30.0% |
| ! | TTTGATAACAACTTTGATGG+TGG | + | chr7.4:78719246-78719265 | MS.gene91050:CDS | 30.0% |
| !! | GAAGATTTTGATAACAACAC+TGG | + | chr7.4:78719759-78719778 | MS.gene91050:CDS | 30.0% |
| !! | GCAAGATTTTGATAGTATCA+TGG | + | chr7.4:78719335-78719354 | MS.gene91050:CDS | 30.0% |
| !!! | TGACCAATTGACTTTTTTGA+AGG | + | chr7.4:78718762-78718781 | MS.gene91050:CDS | 30.0% |
| !!! | TTTCTTTTTCGATCTTTGCA+AGG | - | chr7.4:78718813-78718832 | None:intergenic | 30.0% |
| AACTTTGGCGGCAATATTAA+TGG | + | chr7.4:78719972-78719991 | MS.gene91050:CDS | 35.0% | |
| ACATTACAGGTAGCAATACA+AGG | + | chr7.4:78719550-78719569 | MS.gene91050:CDS | 35.0% | |
| AGATCACTAGAAAGATGTCT+AGG | + | chr7.4:78718950-78718969 | MS.gene91050:CDS | 35.0% | |
| AGTGGTTTCAATAACAACCA+TGG | + | chr7.4:78719141-78719160 | MS.gene91050:CDS | 35.0% | |
| ATACCACCACATACAAATCA+TGG | + | chr7.4:78719795-78719814 | MS.gene91050:CDS | 35.0% | |
| ATATTAATGGAGATGGGATG+CGG | + | chr7.4:78719985-78720004 | MS.gene91050:CDS | 35.0% | |
| ATGATACATGTAGCAACATG+TGG | + | chr7.4:78719889-78719908 | MS.gene91050:CDS | 35.0% | |
| CAAGTATGAGTCAATGTCAT+TGG | + | chr7.4:78718717-78718736 | MS.gene91050:CDS | 35.0% | |
| CAATCACATGAAAATCCTAG+TGG | + | chr7.4:78719462-78719481 | MS.gene91050:CDS | 35.0% | |
| CATGATATGTTTCTTCCTCA+TGG | + | chr7.4:78719393-78719412 | MS.gene91050:CDS | 35.0% | |
| CCATTACCTGAAAATTCTAG+TGG | + | chr7.4:78719279-78719298 | MS.gene91050:CDS | 35.0% | |
| GACAATCTTATGTGGAATTG+AGG | + | chr7.4:78718615-78718634 | MS.gene91050:CDS | 35.0% | |
| GATGATCAAGAAAACTTTGG+AGG | + | chr7.4:78719633-78719652 | MS.gene91050:CDS | 35.0% | |
| GATGTCTAGGCATTTAGAAA+AGG | + | chr7.4:78718963-78718982 | MS.gene91050:CDS | 35.0% | |
| TGTTTCTTCCTCATGGAAAT+CGG | + | chr7.4:78719400-78719419 | MS.gene91050:CDS | 35.0% | |
| TTACCTGAAAATTCTAGTGG+TGG | + | chr7.4:78719282-78719301 | MS.gene91050:CDS | 35.0% | |
| TTCTCATTCAGATTTGCATG+TGG | - | chr7.4:78719582-78719601 | None:intergenic | 35.0% | |
| ! | AAACCACCACTAGAATTTTC+AGG | - | chr7.4:78719288-78719307 | None:intergenic | 35.0% |
| ! | AAAGTTGATCAAATGACCAG+TGG | + | chr7.4:78719123-78719142 | MS.gene91050:CDS | 35.0% |
| ! | ATGGTTGTTATTGAAACCAC+TGG | - | chr7.4:78719142-78719161 | None:intergenic | 35.0% |
| ! | TACTTTAGAAGATGGTGATG+GGG | + | chr7.4:78719035-78719054 | MS.gene91050:CDS | 35.0% |
| ! | TGGTCTCCAAAATTTTCTTG+AGG | - | chr7.4:78719729-78719748 | None:intergenic | 35.0% |
| !! | CAACATGCAAATTTTAGTGG+TGG | + | chr7.4:78719690-78719709 | MS.gene91050:CDS | 35.0% |
| !! | CAAGGTTTTGATGACATTAC+AGG | + | chr7.4:78719537-78719556 | MS.gene91050:CDS | 35.0% |
| !! | CAATGACATTGACTCATACT+TGG | - | chr7.4:78718719-78718738 | None:intergenic | 35.0% |
| !!! | ATTGATGGTTTTGTATCACC+TGG | - | chr7.4:78718661-78718680 | None:intergenic | 35.0% |
| !!! | CCACTAGAATTTTCAGGTAA+TGG | - | chr7.4:78719282-78719301 | None:intergenic | 35.0% |
| ACAACATAGATAGCAGCATG+TGG | + | chr7.4:78719664-78719683 | MS.gene91050:CDS | 40.0% | |
| ATATCAACACCACCATTGCT+TGG | - | chr7.4:78719933-78719952 | None:intergenic | 40.0% | |
| ATCAATATGGCCATCTCCTA+CGG | + | chr7.4:78718675-78718694 | MS.gene91050:CDS | 40.0% | |
| CATGAAAATCCAAGCAATGG+TGG | + | chr7.4:78719921-78719940 | MS.gene91050:CDS | 40.0% | |
| CCAAATCTAACAAGGGTTGT+TGG | - | chr7.4:78719098-78719117 | None:intergenic | 40.0% | |
| CCAACAACCCTTGTTAGATT+TGG | + | chr7.4:78719095-78719114 | MS.gene91050:CDS | 40.0% | |
| CCACATACAAATCATGGTGT+TGG | + | chr7.4:78719801-78719820 | MS.gene91050:CDS | 40.0% | |
| CCACATGAAAATCCAAGCAA+TGG | + | chr7.4:78719918-78719937 | MS.gene91050:CDS | 40.0% | |
| GAAAGGGTTGTTCACCAAAA+TGG | + | chr7.4:78718585-78718604 | MS.gene91050:CDS | 40.0% | |
| GAAGTTCACAGAAACTTTGG+AGG | + | chr7.4:78719858-78719877 | MS.gene91050:CDS | 40.0% | |
| GCGGCAATATTAATGGAGAT+GGG | + | chr7.4:78719979-78719998 | MS.gene91050:CDS | 40.0% | |
| GTTGGAGGAGGATTATTAAG+AGG | - | chr7.4:78718997-78719016 | None:intergenic | 40.0% | |
| GTTTCTTCCTCATGGAAATC+GGG | + | chr7.4:78719401-78719420 | MS.gene91050:CDS | 40.0% | |
| TAACAACCATGGAAGTAGCA+TGG | + | chr7.4:78719152-78719171 | MS.gene91050:CDS | 40.0% | |
| TAATAATCCTCCTCCAACGT+TGG | + | chr7.4:78718999-78719018 | MS.gene91050:CDS | 40.0% | |
| TCACATGAAAATCCTAGTGG+TGG | + | chr7.4:78719465-78719484 | MS.gene91050:CDS | 40.0% | |
| TGACCTCCAAAATATCCTTG+AGG | - | chr7.4:78719507-78719526 | None:intergenic | 40.0% | |
| TTTCTTCCTCATGGAAATCG+GGG | + | chr7.4:78719402-78719421 | MS.gene91050:CDS | 40.0% | |
| ! | ACACCATGATTTGTATGTGG+TGG | - | chr7.4:78719801-78719820 | None:intergenic | 40.0% |
| ! | CCAACACCATGATTTGTATG+TGG | - | chr7.4:78719804-78719823 | None:intergenic | 40.0% |
| ! | CCATTGCTTGGATTTTCATG+TGG | - | chr7.4:78719921-78719940 | None:intergenic | 40.0% |
| ! | TTGCCTCCTCAAGGATATTT+TGG | + | chr7.4:78719498-78719517 | MS.gene91050:CDS | 40.0% |
| ! | TTGCTTGGATTTTCATGTGG+AGG | - | chr7.4:78719918-78719937 | None:intergenic | 40.0% |
| !! | AAAGATATTGGTGCCAACGT+TGG | - | chr7.4:78719015-78719034 | None:intergenic | 40.0% |
| !! | AACAACTTTGATGGTGGCAT+GGG | + | chr7.4:78719252-78719271 | MS.gene91050:CDS | 40.0% |
| !! | CATTCTGGGGTTAACATGTA+TGG | + | chr7.4:78719060-78719079 | MS.gene91050:CDS | 40.0% |
| !! | TAACAACTTTGATGGTGGCA+TGG | + | chr7.4:78719251-78719270 | MS.gene91050:CDS | 40.0% |
| !! | TTGGCTAATCAAGCCGATTT+TGG | + | chr7.4:78719219-78719238 | MS.gene91050:CDS | 40.0% |
| ATGTGGAATTGAGGCATGTG+CGG | + | chr7.4:78718624-78718643 | MS.gene91050:CDS | 45.0% | |
| CCACCACTAAGATCTGTTAG+TGG | - | chr7.4:78719186-78719205 | None:intergenic | 45.0% | |
| CCACTAACAGATCTTAGTGG+TGG | + | chr7.4:78719183-78719202 | MS.gene91050:CDS | 45.0% | |
| CCACTAAGATCTGTTAGTGG+AGG | - | chr7.4:78719183-78719202 | None:intergenic | 45.0% | |
| CCTCCAAAATATCCTTGAGG+AGG | - | chr7.4:78719504-78719523 | None:intergenic | 45.0% | |
| CCTCCACTAACAGATCTTAG+TGG | + | chr7.4:78719180-78719199 | MS.gene91050:CDS | 45.0% | |
| CTAACAGATCTTAGTGGTGG+TGG | + | chr7.4:78719186-78719205 | MS.gene91050:CDS | 45.0% | |
| GAGCAGGTGACAATCTTATG+TGG | + | chr7.4:78718607-78718626 | MS.gene91050:CDS | 45.0% | |
| GGAGGTCAAAGCAACTTTCA+AGG | + | chr7.4:78719519-78719538 | MS.gene91050:CDS | 45.0% | |
| GGCGGCAATATTAATGGAGA+TGG | + | chr7.4:78719978-78719997 | MS.gene91050:CDS | 45.0% | |
| GTAGGAGATGGCCATATTGA+TGG | - | chr7.4:78718676-78718695 | None:intergenic | 45.0% | |
| GTTGTTCACCAAAATGGAGC+AGG | + | chr7.4:78718591-78718610 | MS.gene91050:CDS | 45.0% | |
| TACAGGAACAACTTCAACCC+TGG | + | chr7.4:78720038-78720057 | MS.gene91050:CDS | 45.0% | |
| TTCTTCCTCATGGAAATCGG+GGG | + | chr7.4:78719403-78719422 | MS.gene91050:CDS | 45.0% | |
| ! | GAAAATCCTAGTGGTGGTGT+AGG | + | chr7.4:78719471-78719490 | MS.gene91050:CDS | 45.0% |
| ! | GATTGTCACCTGCTCCATTT+TGG | - | chr7.4:78718602-78718621 | None:intergenic | 45.0% |
| ! | GTATCTCCATGCTACTTCCA+TGG | - | chr7.4:78719161-78719180 | None:intergenic | 45.0% |
| !! | ATGGTGATGGGGTACATTCT+GGG | + | chr7.4:78719046-78719065 | MS.gene91050:CDS | 45.0% |
| !! | CCTCCTCAAGGATATTTTGG+AGG | + | chr7.4:78719501-78719520 | MS.gene91050:CDS | 45.0% |
| !! | TGGTGGTGGTTGTGATAACT+TGG | + | chr7.4:78719200-78719219 | MS.gene91050:CDS | 45.0% |
| AAATGCCCCCGATTTCCATG+AGG | - | chr7.4:78719411-78719430 | None:intergenic | 50.0% | |
| AACACACCTACACCACCACT+AGG | - | chr7.4:78719480-78719499 | None:intergenic | 50.0% | |
| AATATGGCCATCTCCTACGG+TGG | + | chr7.4:78718678-78718697 | MS.gene91050:CDS | 50.0% | |
| AGGCATGTGCGGTTGTGTTT+GGG | + | chr7.4:78718635-78718654 | MS.gene91050:CDS | 50.0% | |
| ATTAGGTCTTCAGCCACCGT+AGG | - | chr7.4:78718694-78718713 | None:intergenic | 50.0% | |
| !! | GATATTGGTGCCAACGTTGG+AGG | - | chr7.4:78719012-78719031 | None:intergenic | 50.0% |
| !! | GATGGTGATGGGGTACATTC+TGG | + | chr7.4:78719045-78719064 | MS.gene91050:CDS | 50.0% |
| !! | TGGTGATGGGGTACATTCTG+GGG | + | chr7.4:78719047-78719066 | MS.gene91050:CDS | 50.0% |
| GAGGCATGTGCGGTTGTGTT+TGG | + | chr7.4:78718634-78718653 | MS.gene91050:CDS | 55.0% | |
| GTAGGTGTGTTGCCTCCTCA+AGG | + | chr7.4:78719489-78719508 | MS.gene91050:CDS | 55.0% | |
| TCTTCAGCCACCGTAGGAGA+TGG | - | chr7.4:78718688-78718707 | None:intergenic | 55.0% | |
| !! | ATTGGTGCCAACGTTGGAGG+AGG | - | chr7.4:78719009-78719028 | None:intergenic | 55.0% |
| TGTGCGGTTGTGTTTGGGCC+AGG | + | chr7.4:78718640-78718659 | MS.gene91050:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 78718502 | 78720076 | 78718502 | ID=MS.gene91050 |
| chr7.4 | mRNA | 78718502 | 78720076 | 78718502 | ID=MS.gene91050.t1;Parent=MS.gene91050 |
| chr7.4 | exon | 78718502 | 78720076 | 78718502 | ID=MS.gene91050.t1.exon1;Parent=MS.gene91050.t1 |
| chr7.4 | CDS | 78718502 | 78720076 | 78718502 | ID=cds.MS.gene91050.t1;Parent=MS.gene91050.t1 |
| Gene Sequence |
| Protein sequence |
