Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91054.t1 | XP_013454922.1 | 74.6 | 523 | 125 | 2 | 1 | 519 | 1 | 519 | 3.70E-143 | 518.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91054.t1 | Q7XJK8 | 27.8 | 237 | 157 | 5 | 6 | 233 | 2 | 233 | 2.5e-15 | 85.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91054.t1 | A0A072USW1 | 74.6 | 523 | 125 | 2 | 1 | 519 | 1 | 519 | 2.6e-143 | 518.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene91054.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91054.t1 | MTR_4g019670 | 81.262 | 523 | 90 | 2 | 1 | 519 | 1 | 519 | 0.0 | 804 |
| MS.gene91054.t1 | MTR_7g106510 | 80.534 | 524 | 76 | 6 | 1 | 519 | 1 | 503 | 0.0 | 789 |
| MS.gene91054.t1 | MTR_3g093900 | 44.082 | 583 | 249 | 8 | 1 | 519 | 1 | 570 | 2.23e-133 | 399 |
| MS.gene91054.t1 | MTR_8g467500 | 52.963 | 270 | 123 | 1 | 13 | 282 | 13 | 278 | 1.13e-72 | 233 |
| MS.gene91054.t1 | MTR_5g075380 | 33.333 | 156 | 104 | 0 | 7 | 162 | 4 | 159 | 5.55e-24 | 98.6 |
| MS.gene91054.t1 | MTR_3g466980 | 33.333 | 165 | 106 | 2 | 1 | 164 | 1 | 162 | 3.42e-23 | 98.2 |
| MS.gene91054.t1 | MTR_8g036130 | 37.405 | 131 | 80 | 1 | 4 | 132 | 1 | 131 | 5.82e-22 | 95.5 |
| MS.gene91054.t1 | MTR_3g466830 | 31.613 | 155 | 106 | 0 | 6 | 160 | 2 | 156 | 1.04e-21 | 92.4 |
| MS.gene91054.t1 | MTR_4g032620 | 33.333 | 156 | 93 | 2 | 6 | 155 | 3 | 153 | 1.46e-21 | 94.0 |
| MS.gene91054.t1 | MTR_4g031910 | 37.179 | 156 | 94 | 2 | 1 | 155 | 1 | 153 | 2.09e-19 | 87.8 |
| MS.gene91054.t1 | MTR_2g016210 | 29.677 | 155 | 108 | 1 | 7 | 160 | 4 | 158 | 1.05e-18 | 85.9 |
| MS.gene91054.t1 | MTR_3g466890 | 30.065 | 153 | 106 | 1 | 6 | 157 | 2 | 154 | 1.60e-18 | 83.2 |
| MS.gene91054.t1 | MTR_1g090710 | 33.913 | 115 | 75 | 1 | 6 | 120 | 3 | 116 | 1.62e-18 | 83.2 |
| MS.gene91054.t1 | MTR_3g065100 | 32.051 | 156 | 106 | 0 | 6 | 161 | 3 | 158 | 2.34e-18 | 85.1 |
| MS.gene91054.t1 | MTR_3g031240 | 29.915 | 117 | 82 | 0 | 6 | 122 | 3 | 119 | 1.62e-17 | 80.9 |
| MS.gene91054.t1 | MTR_4g032260 | 39.583 | 96 | 58 | 0 | 37 | 132 | 34 | 129 | 3.58e-17 | 79.3 |
| MS.gene91054.t1 | MTR_2g035610 | 36.800 | 125 | 76 | 1 | 1 | 125 | 1 | 122 | 8.81e-17 | 77.0 |
| MS.gene91054.t1 | MTR_5g047580 | 35.833 | 120 | 73 | 2 | 1 | 120 | 1 | 116 | 9.43e-17 | 78.2 |
| MS.gene91054.t1 | MTR_4g032290 | 29.870 | 154 | 93 | 3 | 37 | 175 | 34 | 187 | 7.56e-16 | 77.4 |
| MS.gene91054.t1 | MTR_4g063790 | 26.582 | 158 | 109 | 2 | 6 | 159 | 3 | 157 | 7.69e-16 | 75.9 |
| MS.gene91054.t1 | MTR_4g028800 | 42.857 | 70 | 38 | 1 | 7 | 76 | 4 | 71 | 1.14e-15 | 72.4 |
| MS.gene91054.t1 | MTR_3g031100 | 29.060 | 117 | 83 | 0 | 6 | 122 | 3 | 119 | 1.87e-15 | 76.6 |
| MS.gene91054.t1 | MTR_1g090783 | 27.586 | 145 | 104 | 1 | 6 | 150 | 2 | 145 | 2.80e-15 | 73.9 |
| MS.gene91054.t1 | MTR_1g077390 | 29.167 | 144 | 93 | 3 | 6 | 141 | 3 | 145 | 2.84e-15 | 73.9 |
| MS.gene91054.t1 | MTR_1g090697 | 33.333 | 120 | 76 | 2 | 1 | 120 | 1 | 116 | 6.42e-15 | 72.8 |
| MS.gene91054.t1 | MTR_3g466900 | 30.645 | 124 | 85 | 1 | 35 | 157 | 2 | 125 | 3.17e-14 | 70.1 |
| MS.gene91054.t1 | MTR_3g466930 | 31.452 | 124 | 84 | 1 | 35 | 157 | 2 | 125 | 3.42e-14 | 70.1 |
| MS.gene91054.t1 | MTR_1g084950 | 37.815 | 119 | 69 | 2 | 6 | 120 | 3 | 120 | 2.11e-13 | 68.6 |
| MS.gene91054.t1 | MTR_4g028720 | 35.433 | 127 | 81 | 1 | 6 | 132 | 3 | 128 | 6.37e-13 | 67.0 |
| MS.gene91054.t1 | MTR_1g077300 | 30.723 | 166 | 97 | 4 | 6 | 167 | 3 | 154 | 1.01e-12 | 66.6 |
| MS.gene91054.t1 | MTR_1g077320 | 34.783 | 115 | 74 | 1 | 6 | 120 | 3 | 116 | 1.08e-12 | 66.2 |
| MS.gene91054.t1 | MTR_3g467080 | 28.205 | 117 | 84 | 0 | 6 | 122 | 3 | 119 | 2.35e-12 | 65.5 |
| MS.gene91054.t1 | MTR_7g011950 | 33.858 | 127 | 83 | 1 | 6 | 132 | 3 | 128 | 2.36e-12 | 65.5 |
| MS.gene91054.t1 | MTR_6g005450 | 27.397 | 146 | 91 | 5 | 8 | 147 | 5 | 141 | 6.07e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91054.t1 | AT1G65300 | 36.522 | 115 | 73 | 0 | 6 | 120 | 2 | 116 | 3.55e-20 | 91.3 |
| MS.gene91054.t1 | AT2G40210 | 29.341 | 167 | 115 | 2 | 4 | 170 | 1 | 164 | 6.55e-20 | 92.0 |
| MS.gene91054.t1 | AT3G05860 | 31.126 | 151 | 99 | 3 | 1 | 150 | 1 | 147 | 8.70e-18 | 83.6 |
| MS.gene91054.t1 | AT3G05860 | 31.126 | 151 | 99 | 3 | 1 | 150 | 1 | 147 | 9.48e-18 | 83.6 |
| MS.gene91054.t1 | AT3G05860 | 31.126 | 151 | 99 | 3 | 1 | 150 | 1 | 147 | 3.73e-17 | 80.5 |
| MS.gene91054.t1 | AT5G26650 | 33.333 | 114 | 76 | 0 | 7 | 120 | 2 | 115 | 5.52e-17 | 83.2 |
| MS.gene91054.t1 | AT5G06500 | 30.000 | 150 | 104 | 1 | 6 | 155 | 3 | 151 | 5.75e-16 | 78.2 |
| MS.gene91054.t1 | AT1G31630 | 33.043 | 115 | 76 | 1 | 6 | 120 | 2 | 115 | 6.41e-16 | 79.7 |
| MS.gene91054.t1 | AT5G27960 | 30.075 | 133 | 91 | 2 | 7 | 139 | 2 | 132 | 8.10e-16 | 79.0 |
| MS.gene91054.t1 | AT1G22590 | 29.358 | 109 | 74 | 1 | 6 | 114 | 3 | 108 | 2.19e-15 | 74.3 |
| MS.gene91054.t1 | AT1G31640 | 32.174 | 115 | 77 | 1 | 6 | 120 | 2 | 115 | 4.27e-15 | 78.2 |
| MS.gene91054.t1 | AT1G65330 | 32.743 | 113 | 76 | 0 | 8 | 120 | 4 | 116 | 4.39e-15 | 76.3 |
| MS.gene91054.t1 | AT5G26630 | 34.637 | 179 | 106 | 5 | 1 | 177 | 1 | 170 | 6.06e-15 | 74.3 |
| MS.gene91054.t1 | AT5G48670 | 36.134 | 119 | 76 | 0 | 4 | 122 | 1 | 119 | 8.22e-15 | 75.9 |
| MS.gene91054.t1 | AT2G28700 | 27.941 | 204 | 134 | 6 | 4 | 203 | 1 | 195 | 1.26e-14 | 75.5 |
| MS.gene91054.t1 | AT2G15660 | 30.636 | 173 | 99 | 7 | 5 | 171 | 3 | 160 | 7.77e-14 | 72.0 |
| MS.gene91054.t1 | AT5G27810 | 32.184 | 87 | 59 | 0 | 34 | 120 | 3 | 89 | 6.26e-11 | 60.5 |
Find 104 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTTTCTCAAGGAAATA+TGG | 0.173617 | 7.4:+78644310 | MS.gene91054:CDS |
| TTGCCTCCTCAAGGATATTT+TGG | 0.199048 | 7.4:+78644395 | MS.gene91054:CDS |
| AGTATTATTCTCAATCAATT+TGG | 0.203967 | 7.4:-78643442 | None:intergenic |
| TTGGCTAATGAAGCCGATTT+TGG | 0.233732 | 7.4:+78644128 | MS.gene91054:CDS |
| CAAAATCTTCAAAGTTAAAT+TGG | 0.246957 | 7.4:-78644640 | None:intergenic |
| TTGACTCAAACCTGGTTATT+AGG | 0.247950 | 7.4:-78643617 | None:intergenic |
| GATTGTCACCTGCTCCATTT+TGG | 0.265823 | 7.4:-78643508 | None:intergenic |
| GGGCATTTCAGTAGCAATAT+TGG | 0.280920 | 7.4:+78644332 | MS.gene91054:CDS |
| GAAAGGGTTGTTCACCAAAA+TGG | 0.296295 | 7.4:+78643494 | MS.gene91054:CDS |
| AGAAAATGAAGAGACTTTAA+TGG | 0.303503 | 7.4:+78643737 | MS.gene91054:CDS |
| CCAACAACCCTTGTTAGATT+TGG | 0.312296 | 7.4:+78644004 | MS.gene91054:CDS |
| GAGGCATGTGCGGTTGTGTT+TGG | 0.334552 | 7.4:+78643543 | MS.gene91054:CDS |
| ATGACAACATAGATAACATT+TGG | 0.344877 | 7.4:+78644558 | MS.gene91054:CDS |
| TTTCTTTCTCAAGGAAATAT+GGG | 0.363502 | 7.4:+78644311 | MS.gene91054:CDS |
| AATGGTGATGGGGTACATTC+TGG | 0.370012 | 7.4:+78643954 | MS.gene91054:CDS |
| GGCATTTCAGTAGCAATATT+GGG | 0.382881 | 7.4:+78644333 | MS.gene91054:CDS |
| AGGCATGTGCGGTTGTGTTT+GGG | 0.389221 | 7.4:+78643544 | MS.gene91054:CDS |
| GTGATACAAAACCATCAATA+TGG | 0.392745 | 7.4:+78643571 | MS.gene91054:CDS |
| TTTGAAGATCAAGAAAACTT+TGG | 0.393915 | 7.4:+78644527 | MS.gene91054:CDS |
| TTTGAAGTTCAGGGGAACTT+TGG | 0.396318 | 7.4:+78644749 | MS.gene91054:CDS |
| GTTATCAAAATCGCCAAAAT+CGG | 0.397560 | 7.4:-78644141 | None:intergenic |
| CAGGTTTGAGTCAATGTCAT+TGG | 0.398460 | 7.4:+78643626 | MS.gene91054:CDS |
| AACTTTGGCAGCAATATTGA+TGG | 0.399013 | 7.4:+78644866 | MS.gene91054:CDS |
| AATTATTCCGAAGGAAATCC+AGG | 0.399449 | 7.4:-78644950 | None:intergenic |
| CTTCAACCCTGGATTTCCTT+CGG | 0.403734 | 7.4:+78644943 | MS.gene91054:CDS |
| GTAGGAGATGGCCATATTGA+TGG | 0.410732 | 7.4:-78643582 | None:intergenic |
| CTACCACATGCAAATTTGAA+TGG | 0.411798 | 7.4:+78644473 | MS.gene91054:CDS |
| ATGGTGATGGGGTACATTCT+GGG | 0.421537 | 7.4:+78643955 | MS.gene91054:CDS |
| GGCAGCAATATTGATGGAGA+TGG | 0.423343 | 7.4:+78644872 | MS.gene91054:CDS |
| GAAAATGAAGAGACTTTAAT+GGG | 0.430958 | 7.4:+78643738 | MS.gene91054:CDS |
| TTGTCTAAAGTAAAAGATAT+TGG | 0.434434 | 7.4:-78643933 | None:intergenic |
| CATTCTGGGGTTAACATGTA+TGG | 0.436691 | 7.4:+78643969 | MS.gene91054:CDS |
| TGTGCGGTTGTGTTTGGGCC+AGG | 0.446264 | 7.4:+78643549 | MS.gene91054:CDS |
| AAATTTCATCAAAACAACTT+TGG | 0.461108 | 7.4:+78644851 | MS.gene91054:CDS |
| GGAGGTCAAAGCAACTTTCA+AGG | 0.462180 | 7.4:+78644416 | MS.gene91054:CDS |
| CATGATATGTTTCTTTCTCA+AGG | 0.468470 | 7.4:+78644302 | MS.gene91054:CDS |
| ATATCAACACCACCATTGCT+TGG | 0.469029 | 7.4:-78644824 | None:intergenic |
| TACCACATGCAAATTTGAAT+GGG | 0.473760 | 7.4:+78644474 | MS.gene91054:CDS |
| TTTACTTTAGACAATGGTGA+TGG | 0.480639 | 7.4:+78643942 | MS.gene91054:CDS |
| GAAGATCAAGAAAACTTTGG+AGG | 0.480766 | 7.4:+78644530 | MS.gene91054:CDS |
| TACAAGAGCAACTTCAACCC+TGG | 0.483870 | 7.4:+78644932 | MS.gene91054:CDS |
| GAGGTCTAGGCATTTAGAAA+AGG | 0.487608 | 7.4:+78643872 | MS.gene91054:CDS |
| CCAAATCTAACAAGGGTTGT+TGG | 0.489048 | 7.4:-78644004 | None:intergenic |
| CCTACACCTCCAGATCTTAG+TGG | 0.490566 | 7.4:+78644089 | MS.gene91054:CDS |
| GAAGTTCAGGGGAACTTTGG+AGG | 0.495790 | 7.4:+78644752 | MS.gene91054:CDS |
| ATCAATATGGCCATCTCCTA+CGG | 0.501169 | 7.4:+78643584 | MS.gene91054:CDS |
| GATGGAGGAGGATTATTAAG+AGG | 0.505755 | 7.4:-78643903 | None:intergenic |
| AGATCACTAGAAAGAGGTCT+AGG | 0.508379 | 7.4:+78643859 | MS.gene91054:CDS |
| CAATCACCACCACTAAGATC+TGG | 0.508447 | 7.4:-78644098 | None:intergenic |
| CGCTATAAGAAAAGATTGAA+AGG | 0.508733 | 7.4:+78643477 | MS.gene91054:CDS |
| CAACATGCAAATTTGAGTGC+TGG | 0.511397 | 7.4:+78644584 | MS.gene91054:CDS |
| TTACTTTAGACAATGGTGAT+GGG | 0.517853 | 7.4:+78643943 | MS.gene91054:CDS |
| TGAGAATAATACTCAAAGAA+AGG | 0.521008 | 7.4:+78643452 | MS.gene91054:CDS |
| CCACTAAGATCTGGAGGTGT+AGG | 0.531744 | 7.4:-78644089 | None:intergenic |
| AACAACCATGGAAGTAGCAT+GGG | 0.534265 | 7.4:+78644062 | MS.gene91054:CDS |
| GCATCCCCATGCTACTTCCA+TGG | 0.535942 | 7.4:-78644067 | None:intergenic |
| GTTGTTCACCAAAATGGAGC+AGG | 0.556851 | 7.4:+78643500 | MS.gene91054:CDS |
| TCTTCAGCCACCGTAGGAGA+TGG | 0.560949 | 7.4:-78643594 | None:intergenic |
| AAATTAAGATCACTAGAAAG+AGG | 0.562753 | 7.4:+78643853 | MS.gene91054:CDS |
| TGGTGGTGATTGTGATAACT+TGG | 0.565716 | 7.4:+78644109 | MS.gene91054:CDS |
| TTTCTCGACCAAATCTAACA+AGG | 0.571412 | 7.4:-78644012 | None:intergenic |
| AATATGGCCATCTCCTACGG+TGG | 0.571701 | 7.4:+78643587 | MS.gene91054:CDS |
| TACTTTAGACAATGGTGATG+GGG | 0.572598 | 7.4:+78643944 | MS.gene91054:CDS |
| TAATAATCCTCCTCCATCGT+TGG | 0.573169 | 7.4:+78643908 | MS.gene91054:CDS |
| ATTGGTGCCAACGATGGAGG+AGG | 0.576273 | 7.4:-78643915 | None:intergenic |
| CAATGACATTGACTCAAACC+TGG | 0.576547 | 7.4:-78643625 | None:intergenic |
| TAACAACCATGGAAGTAGCA+TGG | 0.577578 | 7.4:+78644061 | MS.gene91054:CDS |
| AAAGATATTGGTGCCAACGA+TGG | 0.578886 | 7.4:-78643921 | None:intergenic |
| GTAGGTGTGTTGCCTCCTCA+AGG | 0.582180 | 7.4:+78644386 | MS.gene91054:CDS |
| GCTATAAGAAAAGATTGAAA+GGG | 0.593678 | 7.4:+78643478 | MS.gene91054:CDS |
| TGGTGATGGGGTACATTCTG+GGG | 0.594600 | 7.4:+78643956 | MS.gene91054:CDS |
| GATATTGGTGCCAACGATGG+AGG | 0.597015 | 7.4:-78643918 | None:intergenic |
| GACAATCTTATGCGGCATTG+AGG | 0.598018 | 7.4:+78643524 | MS.gene91054:CDS |
| GCAGCAATATTGATGGAGAT+GGG | 0.598875 | 7.4:+78644873 | MS.gene91054:CDS |
| TTCTTTCTCAAGGAAATATG+GGG | 0.600624 | 7.4:+78644312 | MS.gene91054:CDS |
| ACATTATTGGTAGCAACGCA+AGG | 0.601393 | 7.4:+78644447 | MS.gene91054:CDS |
| CCAACACTAGGATTTGTATG+TGG | 0.605205 | 7.4:-78644695 | None:intergenic |
| TTCTCGACCAAATCTAACAA+GGG | 0.605573 | 7.4:-78644011 | None:intergenic |
| CATGAAAATCCAAGCAATGG+TGG | 0.610991 | 7.4:+78644815 | MS.gene91054:CDS |
| CCACATGAAAATCCAAGCAA+TGG | 0.614633 | 7.4:+78644812 | MS.gene91054:CDS |
| TCACCTGAAAATTCTAGTGG+TGG | 0.615267 | 7.4:+78644191 | MS.gene91054:CDS |
| GAAAATGCTAGTGGTGGTGT+AGG | 0.615595 | 7.4:+78644368 | MS.gene91054:CDS |
| AAAGTTGATCAAATGAGCAG+TGG | 0.618596 | 7.4:+78644032 | MS.gene91054:CDS |
| CCACATACAAATCCTAGTGT+TGG | 0.620141 | 7.4:+78644695 | MS.gene91054:CDS |
| ATTAGGTCTTCAGCCACCGT+AGG | 0.620414 | 7.4:-78643600 | None:intergenic |
| TTCCCATTCAAATTTGCATG+TGG | 0.620497 | 7.4:-78644476 | None:intergenic |
| ATTATTCCGAAGGAAATCCA+GGG | 0.624169 | 7.4:-78644949 | None:intergenic |
| CCATCACCTGAAAATTCTAG+TGG | 0.626301 | 7.4:+78644188 | MS.gene91054:CDS |
| CAATCACATGAAAATGCTAG+TGG | 0.634366 | 7.4:+78644359 | MS.gene91054:CDS |
| TCATCACATGAAAATCATAG+TGG | 0.635133 | 7.4:+78644272 | MS.gene91054:CDS |
| ATGCATCAAATTGAAAACGA+AGG | 0.641960 | 7.4:+78643768 | MS.gene91054:CDS |
| ACACTAGGATTTGTATGTGG+TGG | 0.642124 | 7.4:-78644692 | None:intergenic |
| CCTCCAAAATATCCTTGAGG+AGG | 0.656666 | 7.4:-78644398 | None:intergenic |
| ATGATACATGTAGCAACATG+TGG | 0.657144 | 7.4:+78644783 | MS.gene91054:CDS |
| ATGCGGCATTGAGGCATGTG+CGG | 0.658684 | 7.4:+78643533 | MS.gene91054:CDS |
| TGACCTCCAAAATATCCTTG+AGG | 0.660910 | 7.4:-78644401 | None:intergenic |
| TGGCTGAAGACCTAATAACC+AGG | 0.668231 | 7.4:+78643607 | MS.gene91054:CDS |
| TCACCACCACTAAGATCTGG+AGG | 0.674015 | 7.4:-78644095 | None:intergenic |
| ACAGCAACATTACCAACACT+AGG | 0.677687 | 7.4:-78644707 | None:intergenic |
| ACACCTCCAGATCTTAGTGG+TGG | 0.688719 | 7.4:+78644092 | MS.gene91054:CDS |
| AGTGGTTTCAATAACAACCA+TGG | 0.696939 | 7.4:+78644050 | MS.gene91054:CDS |
| GAGCAGGTGACAATCTTATG+CGG | 0.699387 | 7.4:+78643516 | MS.gene91054:CDS |
| ACAACCATGGAAGTAGCATG+GGG | 0.707731 | 7.4:+78644063 | MS.gene91054:CDS |
| TCACATGAAAATGCTAGTGG+TGG | 0.733997 | 7.4:+78644362 | MS.gene91054:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATAACAACTTTTATAA+CGG | + | chr7.4:78644155-78644174 | MS.gene91054:CDS | 15.0% |
| !! | AAATTTCATCAAAACAACTT+TGG | + | chr7.4:78644851-78644870 | MS.gene91054:CDS | 20.0% |
| !! | AGTATTATTCTCAATCAATT+TGG | - | chr7.4:78643445-78643464 | None:intergenic | 20.0% |
| !! | CAAAATCTTCAAAGTTAAAT+TGG | - | chr7.4:78644643-78644662 | None:intergenic | 20.0% |
| !!! | ATATCTTTTACTTTAGACAA+TGG | + | chr7.4:78643936-78643955 | MS.gene91054:CDS | 20.0% |
| !!! | TTGTCTAAAGTAAAAGATAT+TGG | - | chr7.4:78643936-78643955 | None:intergenic | 20.0% |
| ! | AAATTAAGATCACTAGAAAG+AGG | + | chr7.4:78643853-78643872 | MS.gene91054:CDS | 25.0% |
| ! | AGAAAATGAAGAGACTTTAA+TGG | + | chr7.4:78643737-78643756 | MS.gene91054:CDS | 25.0% |
| ! | ATGACAACATAGATAACATT+TGG | + | chr7.4:78644558-78644577 | MS.gene91054:CDS | 25.0% |
| ! | GAAAATGAAGAGACTTTAAT+GGG | + | chr7.4:78643738-78643757 | MS.gene91054:CDS | 25.0% |
| ! | GCTATAAGAAAAGATTGAAA+GGG | + | chr7.4:78643478-78643497 | MS.gene91054:CDS | 25.0% |
| ! | TATCCTTCAAAAAAGTCAAT+TGG | - | chr7.4:78643677-78643696 | None:intergenic | 25.0% |
| ! | TGAGAATAATACTCAAAGAA+AGG | + | chr7.4:78643452-78643471 | MS.gene91054:CDS | 25.0% |
| ! | TTTCTTTCTCAAGGAAATAT+GGG | + | chr7.4:78644311-78644330 | MS.gene91054:CDS | 25.0% |
| ! | TTTGAAGATCAAGAAAACTT+TGG | + | chr7.4:78644527-78644546 | MS.gene91054:CDS | 25.0% |
| !! | GATAATTTGGAAGATTTTGA+TGG | + | chr7.4:78644236-78644255 | MS.gene91054:CDS | 25.0% |
| !! | TGATCTTCAAAATTTTCTTG+AGG | - | chr7.4:78644518-78644537 | None:intergenic | 25.0% |
| !!! | ATTGACTTTTTTGAAGGATA+AGG | + | chr7.4:78643677-78643696 | MS.gene91054:CDS | 25.0% |
| !!! | TGCGTTTTTTCAAGATAATT+TGG | + | chr7.4:78644223-78644242 | MS.gene91054:CDS | 25.0% |
| !!! | TTGACTTTTTTGAAGGATAA+GGG | + | chr7.4:78643678-78643697 | MS.gene91054:CDS | 25.0% |
| ATGCATCAAATTGAAAACGA+AGG | + | chr7.4:78643768-78643787 | MS.gene91054:CDS | 30.0% | |
| CATGATATGTTTCTTTCTCA+AGG | + | chr7.4:78644302-78644321 | MS.gene91054:CDS | 30.0% | |
| CGCTATAAGAAAAGATTGAA+AGG | + | chr7.4:78643477-78643496 | MS.gene91054:CDS | 30.0% | |
| GTGATACAAAACCATCAATA+TGG | + | chr7.4:78643571-78643590 | MS.gene91054:CDS | 30.0% | |
| GTTATCAAAATCGCCAAAAT+CGG | - | chr7.4:78644144-78644163 | None:intergenic | 30.0% | |
| GTTTCTTTCTCAAGGAAATA+TGG | + | chr7.4:78644310-78644329 | MS.gene91054:CDS | 30.0% | |
| TACCACATGCAAATTTGAAT+GGG | + | chr7.4:78644474-78644493 | MS.gene91054:CDS | 30.0% | |
| TCATCACATGAAAATCATAG+TGG | + | chr7.4:78644272-78644291 | MS.gene91054:CDS | 30.0% | |
| TTACTTTAGACAATGGTGAT+GGG | + | chr7.4:78643943-78643962 | MS.gene91054:CDS | 30.0% | |
| TTCTTTCTCAAGGAAATATG+GGG | + | chr7.4:78644312-78644331 | MS.gene91054:CDS | 30.0% | |
| TTGCTTCCTCAAGAAAAATT+TGG | + | chr7.4:78644614-78644633 | MS.gene91054:CDS | 30.0% | |
| TTTACTTTAGACAATGGTGA+TGG | + | chr7.4:78643942-78643961 | MS.gene91054:CDS | 30.0% | |
| ! | AACAACTTTTATAACGGCAT+GGG | + | chr7.4:78644161-78644180 | MS.gene91054:CDS | 30.0% |
| ! | TAACAACTTTTATAACGGCA+TGG | + | chr7.4:78644160-78644179 | MS.gene91054:CDS | 30.0% |
| ! | TCTTCAAAATTTTCTTGAGG+AGG | - | chr7.4:78644515-78644534 | None:intergenic | 30.0% |
| !! | CAAGGTTTTGATGACATTAT+TGG | + | chr7.4:78644434-78644453 | MS.gene91054:CDS | 30.0% |
| !!! | ATGGAAATTTTGAAGTTCAG+GGG | + | chr7.4:78644741-78644760 | MS.gene91054:CDS | 30.0% |
| !!! | CATGGAAATTTTGAAGTTCA+GGG | + | chr7.4:78644740-78644759 | MS.gene91054:CDS | 30.0% |
| !!! | TCATGGAAATTTTGAAGTTC+AGG | + | chr7.4:78644739-78644758 | MS.gene91054:CDS | 30.0% |
| !!! | TGACCAATTGACTTTTTTGA+AGG | + | chr7.4:78643671-78643690 | MS.gene91054:CDS | 30.0% |
| !!! | TTTCTTTTTCGATCTTTGCA+AGG | - | chr7.4:78643722-78643741 | None:intergenic | 30.0% |
| AACTTTGGCAGCAATATTGA+TGG | + | chr7.4:78644866-78644885 | MS.gene91054:CDS | 35.0% | |
| AGTGGTTTCAATAACAACCA+TGG | + | chr7.4:78644050-78644069 | MS.gene91054:CDS | 35.0% | |
| ATGATACATGTAGCAACATG+TGG | + | chr7.4:78644783-78644802 | MS.gene91054:CDS | 35.0% | |
| CAATCACATGAAAATGCTAG+TGG | + | chr7.4:78644359-78644378 | MS.gene91054:CDS | 35.0% | |
| CTACCACATGCAAATTTGAA+TGG | + | chr7.4:78644473-78644492 | MS.gene91054:CDS | 35.0% | |
| GAAGATCAAGAAAACTTTGG+AGG | + | chr7.4:78644530-78644549 | MS.gene91054:CDS | 35.0% | |
| GGCATTTCAGTAGCAATATT+GGG | + | chr7.4:78644333-78644352 | MS.gene91054:CDS | 35.0% | |
| TTCCCATTCAAATTTGCATG+TGG | - | chr7.4:78644479-78644498 | None:intergenic | 35.0% | |
| TTCTCGACCAAATCTAACAA+GGG | - | chr7.4:78644014-78644033 | None:intergenic | 35.0% | |
| TTGACTCAAACCTGGTTATT+AGG | - | chr7.4:78643620-78643639 | None:intergenic | 35.0% | |
| TTTCTCGACCAAATCTAACA+AGG | - | chr7.4:78644015-78644034 | None:intergenic | 35.0% | |
| ! | AAACCACCACTAGAATTTTC+AGG | - | chr7.4:78644197-78644216 | None:intergenic | 35.0% |
| ! | AAAGTTGATCAAATGAGCAG+TGG | + | chr7.4:78644032-78644051 | MS.gene91054:CDS | 35.0% |
| ! | TACTTTAGACAATGGTGATG+GGG | + | chr7.4:78643944-78643963 | MS.gene91054:CDS | 35.0% |
| ! | TGGTCTCCAAATTTTTCTTG+AGG | - | chr7.4:78644623-78644642 | None:intergenic | 35.0% |
| !!! | ATTGATGGTTTTGTATCACC+TGG | - | chr7.4:78643570-78643589 | None:intergenic | 35.0% |
| AACAACCATGGAAGTAGCAT+GGG | + | chr7.4:78644062-78644081 | MS.gene91054:CDS | 40.0% | |
| ACACTAGGATTTGTATGTGG+TGG | - | chr7.4:78644695-78644714 | None:intergenic | 40.0% | |
| ACAGCAACATTACCAACACT+AGG | - | chr7.4:78644710-78644729 | None:intergenic | 40.0% | |
| AGATCACTAGAAAGAGGTCT+AGG | + | chr7.4:78643859-78643878 | MS.gene91054:CDS | 40.0% | |
| ATATCAACACCACCATTGCT+TGG | - | chr7.4:78644827-78644846 | None:intergenic | 40.0% | |
| ATCAATATGGCCATCTCCTA+CGG | + | chr7.4:78643584-78643603 | MS.gene91054:CDS | 40.0% | |
| CAACATGCAAATTTGAGTGC+TGG | + | chr7.4:78644584-78644603 | MS.gene91054:CDS | 40.0% | |
| CAGGTTTGAGTCAATGTCAT+TGG | + | chr7.4:78643626-78643645 | MS.gene91054:CDS | 40.0% | |
| CATGAAAATCCAAGCAATGG+TGG | + | chr7.4:78644815-78644834 | MS.gene91054:CDS | 40.0% | |
| CCAAATCTAACAAGGGTTGT+TGG | - | chr7.4:78644007-78644026 | None:intergenic | 40.0% | |
| CCAACAACCCTTGTTAGATT+TGG | + | chr7.4:78644004-78644023 | MS.gene91054:CDS | 40.0% | |
| CCAACACTAGGATTTGTATG+TGG | - | chr7.4:78644698-78644717 | None:intergenic | 40.0% | |
| CCACATACAAATCCTAGTGT+TGG | + | chr7.4:78644695-78644714 | MS.gene91054:CDS | 40.0% | |
| CCACATGAAAATCCAAGCAA+TGG | + | chr7.4:78644812-78644831 | MS.gene91054:CDS | 40.0% | |
| CCATCACCTGAAAATTCTAG+TGG | + | chr7.4:78644188-78644207 | MS.gene91054:CDS | 40.0% | |
| GAAAGGGTTGTTCACCAAAA+TGG | + | chr7.4:78643494-78643513 | MS.gene91054:CDS | 40.0% | |
| GAGGTCTAGGCATTTAGAAA+AGG | + | chr7.4:78643872-78643891 | MS.gene91054:CDS | 40.0% | |
| GATGGAGGAGGATTATTAAG+AGG | - | chr7.4:78643906-78643925 | None:intergenic | 40.0% | |
| GCAGCAATATTGATGGAGAT+GGG | + | chr7.4:78644873-78644892 | MS.gene91054:CDS | 40.0% | |
| GGGCATTTCAGTAGCAATAT+TGG | + | chr7.4:78644332-78644351 | MS.gene91054:CDS | 40.0% | |
| TAACAACCATGGAAGTAGCA+TGG | + | chr7.4:78644061-78644080 | MS.gene91054:CDS | 40.0% | |
| TAATAATCCTCCTCCATCGT+TGG | + | chr7.4:78643908-78643927 | MS.gene91054:CDS | 40.0% | |
| TCACATGAAAATGCTAGTGG+TGG | + | chr7.4:78644362-78644381 | MS.gene91054:CDS | 40.0% | |
| TCACCTGAAAATTCTAGTGG+TGG | + | chr7.4:78644191-78644210 | MS.gene91054:CDS | 40.0% | |
| TGACCTCCAAAATATCCTTG+AGG | - | chr7.4:78644404-78644423 | None:intergenic | 40.0% | |
| ! | ACATTATTGGTAGCAACGCA+AGG | + | chr7.4:78644447-78644466 | MS.gene91054:CDS | 40.0% |
| ! | CCATTGCTTGGATTTTCATG+TGG | - | chr7.4:78644815-78644834 | None:intergenic | 40.0% |
| ! | TGGTGGTGATTGTGATAACT+TGG | + | chr7.4:78644109-78644128 | MS.gene91054:CDS | 40.0% |
| ! | TTGCCTCCTCAAGGATATTT+TGG | + | chr7.4:78644395-78644414 | MS.gene91054:CDS | 40.0% |
| ! | TTGCTTGGATTTTCATGTGG+AGG | - | chr7.4:78644812-78644831 | None:intergenic | 40.0% |
| ! | TTTGAAGTTCAGGGGAACTT+TGG | + | chr7.4:78644749-78644768 | MS.gene91054:CDS | 40.0% |
| !! | AAAGATATTGGTGCCAACGA+TGG | - | chr7.4:78643924-78643943 | None:intergenic | 40.0% |
| !! | CAATGACATTGACTCAAACC+TGG | - | chr7.4:78643628-78643647 | None:intergenic | 40.0% |
| !! | CATTCTGGGGTTAACATGTA+TGG | + | chr7.4:78643969-78643988 | MS.gene91054:CDS | 40.0% |
| !! | TTGGCTAATGAAGCCGATTT+TGG | + | chr7.4:78644128-78644147 | MS.gene91054:CDS | 40.0% |
| !!! | CCACTAGAATTTTCAGGTGA+TGG | - | chr7.4:78644191-78644210 | None:intergenic | 40.0% |
| !!! | GGAAGATTTTGATGGTGTCA+TGG | + | chr7.4:78644244-78644263 | MS.gene91054:CDS | 40.0% |
| !!! | GTTGCTGTTTTGTCTCATCA+TGG | + | chr7.4:78644722-78644741 | MS.gene91054:CDS | 40.0% |
| ACAACCATGGAAGTAGCATG+GGG | + | chr7.4:78644063-78644082 | MS.gene91054:CDS | 45.0% | |
| CAATCACCACCACTAAGATC+TGG | - | chr7.4:78644101-78644120 | None:intergenic | 45.0% | |
| CCTCCAAAATATCCTTGAGG+AGG | - | chr7.4:78644401-78644420 | None:intergenic | 45.0% | |
| CTTCAACCCTGGATTTCCTT+CGG | + | chr7.4:78644943-78644962 | MS.gene91054:CDS | 45.0% | |
| GACAATCTTATGCGGCATTG+AGG | + | chr7.4:78643524-78643543 | MS.gene91054:CDS | 45.0% | |
| GAGCAGGTGACAATCTTATG+CGG | + | chr7.4:78643516-78643535 | MS.gene91054:CDS | 45.0% | |
| GGAGGTCAAAGCAACTTTCA+AGG | + | chr7.4:78644416-78644435 | MS.gene91054:CDS | 45.0% | |
| GGCAGCAATATTGATGGAGA+TGG | + | chr7.4:78644872-78644891 | MS.gene91054:CDS | 45.0% | |
| GTAGGAGATGGCCATATTGA+TGG | - | chr7.4:78643585-78643604 | None:intergenic | 45.0% | |
| GTTGTTCACCAAAATGGAGC+AGG | + | chr7.4:78643500-78643519 | MS.gene91054:CDS | 45.0% | |
| TACAAGAGCAACTTCAACCC+TGG | + | chr7.4:78644932-78644951 | MS.gene91054:CDS | 45.0% | |
| TGGCTGAAGACCTAATAACC+AGG | + | chr7.4:78643607-78643626 | MS.gene91054:CDS | 45.0% | |
| ! | GAAAATGCTAGTGGTGGTGT+AGG | + | chr7.4:78644368-78644387 | MS.gene91054:CDS | 45.0% |
| ! | GATTGTCACCTGCTCCATTT+TGG | - | chr7.4:78643511-78643530 | None:intergenic | 45.0% |
| !! | AATGGTGATGGGGTACATTC+TGG | + | chr7.4:78643954-78643973 | MS.gene91054:CDS | 45.0% |
| !! | ATGGTGATGGGGTACATTCT+GGG | + | chr7.4:78643955-78643974 | MS.gene91054:CDS | 45.0% |
| !! | CCTCCTCAAGGATATTTTGG+AGG | + | chr7.4:78644398-78644417 | MS.gene91054:CDS | 45.0% |
| AATATGGCCATCTCCTACGG+TGG | + | chr7.4:78643587-78643606 | MS.gene91054:CDS | 50.0% | |
| ACACCTCCAGATCTTAGTGG+TGG | + | chr7.4:78644092-78644111 | MS.gene91054:CDS | 50.0% | |
| AGGCATGTGCGGTTGTGTTT+GGG | + | chr7.4:78643544-78643563 | MS.gene91054:CDS | 50.0% | |
| ATTAGGTCTTCAGCCACCGT+AGG | - | chr7.4:78643603-78643622 | None:intergenic | 50.0% | |
| CCTACACCTCCAGATCTTAG+TGG | + | chr7.4:78644089-78644108 | MS.gene91054:CDS | 50.0% | |
| GAAGTTCAGGGGAACTTTGG+AGG | + | chr7.4:78644752-78644771 | MS.gene91054:CDS | 50.0% | |
| TCACCACCACTAAGATCTGG+AGG | - | chr7.4:78644098-78644117 | None:intergenic | 50.0% | |
| ! | CCACTAAGATCTGGAGGTGT+AGG | - | chr7.4:78644092-78644111 | None:intergenic | 50.0% |
| !! | GATATTGGTGCCAACGATGG+AGG | - | chr7.4:78643921-78643940 | None:intergenic | 50.0% |
| !! | TGGTGATGGGGTACATTCTG+GGG | + | chr7.4:78643956-78643975 | MS.gene91054:CDS | 50.0% |
| GAGGCATGTGCGGTTGTGTT+TGG | + | chr7.4:78643543-78643562 | MS.gene91054:CDS | 55.0% | |
| GTAGGTGTGTTGCCTCCTCA+AGG | + | chr7.4:78644386-78644405 | MS.gene91054:CDS | 55.0% | |
| TCTTCAGCCACCGTAGGAGA+TGG | - | chr7.4:78643597-78643616 | None:intergenic | 55.0% | |
| ! | ATGCGGCATTGAGGCATGTG+CGG | + | chr7.4:78643533-78643552 | MS.gene91054:CDS | 55.0% |
| ! | GCATCCCCATGCTACTTCCA+TGG | - | chr7.4:78644070-78644089 | None:intergenic | 55.0% |
| !! | ATTGGTGCCAACGATGGAGG+AGG | - | chr7.4:78643918-78643937 | None:intergenic | 55.0% |
| TGTGCGGTTGTGTTTGGGCC+AGG | + | chr7.4:78643549-78643568 | MS.gene91054:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 78643411 | 78644970 | 78643411 | ID=MS.gene91054 |
| chr7.4 | mRNA | 78643411 | 78644970 | 78643411 | ID=MS.gene91054.t1;Parent=MS.gene91054 |
| chr7.4 | exon | 78643411 | 78644970 | 78643411 | ID=MS.gene91054.t1.exon1;Parent=MS.gene91054.t1 |
| chr7.4 | CDS | 78643411 | 78644970 | 78643411 | ID=cds.MS.gene91054.t1;Parent=MS.gene91054.t1 |
| Gene Sequence |
| Protein sequence |
