Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91099.t1 | RHN78369.1 | 92.5 | 388 | 29 | 0 | 1 | 388 | 18 | 405 | 5.50E-210 | 740.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91099.t1 | Q336N8 | 57.7 | 383 | 158 | 2 | 12 | 391 | 87 | 468 | 8.5e-127 | 455.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91099.t1 | G7IBD2 | 92.5 | 388 | 29 | 0 | 1 | 388 | 1 | 388 | 3.9e-210 | 740.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene91099.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91099.t1 | MTR_1g038400 | 92.526 | 388 | 29 | 0 | 1 | 388 | 1 | 388 | 0.0 | 756 |
| MS.gene91099.t1 | MTR_1g038370 | 78.474 | 367 | 58 | 2 | 22 | 388 | 2 | 347 | 0.0 | 598 |
| MS.gene91099.t1 | MTR_5g029370 | 62.778 | 360 | 134 | 0 | 10 | 369 | 71 | 430 | 3.18e-170 | 501 |
| MS.gene91099.t1 | MTR_5g029370 | 62.778 | 360 | 134 | 0 | 10 | 369 | 71 | 430 | 3.18e-170 | 501 |
| MS.gene91099.t1 | MTR_7g407000 | 74.306 | 144 | 19 | 2 | 201 | 343 | 28 | 154 | 1.97e-68 | 216 |
| MS.gene91099.t1 | MTR_3g075210 | 37.333 | 375 | 199 | 8 | 13 | 366 | 3 | 362 | 1.83e-67 | 235 |
| MS.gene91099.t1 | MTR_8g089260 | 35.917 | 387 | 175 | 8 | 24 | 345 | 29 | 407 | 8.69e-55 | 197 |
| MS.gene91099.t1 | MTR_1g094740 | 45.745 | 188 | 98 | 1 | 172 | 359 | 291 | 474 | 1.58e-51 | 188 |
| MS.gene91099.t1 | MTR_1g078070 | 33.168 | 404 | 190 | 12 | 24 | 359 | 146 | 537 | 9.50e-51 | 186 |
| MS.gene91099.t1 | MTR_1g078070 | 33.168 | 404 | 190 | 12 | 24 | 359 | 146 | 537 | 1.21e-50 | 186 |
| MS.gene91099.t1 | MTR_2g047130 | 34.406 | 404 | 186 | 12 | 24 | 359 | 48 | 440 | 5.51e-50 | 184 |
| MS.gene91099.t1 | MTR_2g047130 | 34.406 | 404 | 186 | 12 | 24 | 359 | 45 | 437 | 5.63e-50 | 184 |
| MS.gene91099.t1 | MTR_5g010300 | 42.000 | 250 | 118 | 5 | 133 | 363 | 327 | 568 | 6.16e-50 | 184 |
| MS.gene91099.t1 | MTR_5g010300 | 42.000 | 250 | 118 | 5 | 133 | 363 | 327 | 568 | 6.45e-50 | 184 |
| MS.gene91099.t1 | MTR_5g010300 | 42.000 | 250 | 118 | 5 | 133 | 363 | 327 | 568 | 7.06e-50 | 184 |
| MS.gene91099.t1 | MTR_5g010300 | 42.000 | 250 | 118 | 5 | 133 | 363 | 327 | 568 | 8.37e-50 | 183 |
| MS.gene91099.t1 | MTR_7g097070 | 34.783 | 184 | 116 | 1 | 176 | 359 | 338 | 517 | 5.07e-27 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91099.t1 | AT5G46910 | 59.635 | 384 | 155 | 0 | 7 | 390 | 82 | 465 | 1.35e-171 | 498 |
| MS.gene91099.t1 | AT5G46910 | 59.635 | 384 | 155 | 0 | 7 | 390 | 82 | 465 | 4.91e-170 | 498 |
| MS.gene91099.t1 | AT3G48430 | 34.026 | 385 | 212 | 7 | 12 | 359 | 4 | 383 | 1.70e-59 | 212 |
| MS.gene91099.t1 | AT2G34880 | 33.643 | 431 | 214 | 12 | 25 | 397 | 58 | 474 | 6.76e-58 | 205 |
| MS.gene91099.t1 | AT1G63490 | 41.697 | 271 | 132 | 7 | 107 | 360 | 46 | 307 | 8.75e-56 | 201 |
| MS.gene91099.t1 | AT1G63490 | 41.697 | 271 | 132 | 7 | 107 | 360 | 299 | 560 | 1.40e-55 | 200 |
| MS.gene91099.t1 | AT1G63490 | 41.697 | 271 | 132 | 7 | 107 | 360 | 299 | 560 | 1.40e-55 | 200 |
| MS.gene91099.t1 | AT1G08620 | 34.048 | 420 | 191 | 12 | 25 | 369 | 157 | 565 | 1.19e-54 | 197 |
| MS.gene91099.t1 | AT1G08620 | 34.048 | 420 | 191 | 12 | 25 | 369 | 143 | 551 | 1.33e-54 | 197 |
| MS.gene91099.t1 | AT1G08620 | 34.048 | 420 | 191 | 12 | 25 | 369 | 143 | 551 | 1.33e-54 | 197 |
| MS.gene91099.t1 | AT1G08620 | 34.048 | 420 | 191 | 12 | 25 | 369 | 143 | 551 | 1.33e-54 | 197 |
| MS.gene91099.t1 | AT1G30810 | 32.644 | 435 | 219 | 11 | 24 | 396 | 55 | 477 | 1.19e-53 | 193 |
| MS.gene91099.t1 | AT1G30810 | 32.644 | 435 | 219 | 11 | 24 | 396 | 55 | 477 | 1.19e-53 | 193 |
| MS.gene91099.t1 | AT1G30810 | 32.644 | 435 | 219 | 11 | 24 | 396 | 55 | 477 | 1.19e-53 | 193 |
| MS.gene91099.t1 | AT4G20400 | 30.788 | 406 | 207 | 9 | 24 | 364 | 52 | 448 | 2.07e-52 | 191 |
| MS.gene91099.t1 | AT5G04240 | 46.809 | 188 | 96 | 1 | 172 | 359 | 259 | 442 | 2.80e-52 | 191 |
| MS.gene91099.t1 | AT4G20400 | 31.472 | 394 | 196 | 9 | 36 | 364 | 7 | 391 | 2.29e-49 | 181 |
| MS.gene91099.t1 | AT2G38950 | 28.640 | 419 | 235 | 15 | 22 | 390 | 102 | 506 | 4.97e-34 | 136 |
| MS.gene91099.t1 | AT1G63490 | 52.874 | 87 | 41 | 0 | 274 | 360 | 15 | 101 | 7.39e-24 | 105 |
Find 80 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTTGGATGATCTAAAT+TGG | 0.212573 | 1.3:+21710333 | MS.gene91099:CDS |
| TGTCTTAATGAAAGAGAAAA+AGG | 0.242054 | 1.3:+21710647 | MS.gene91099:CDS |
| AATCCAGCATGATATGAATT+TGG | 0.261244 | 1.3:-21711841 | None:intergenic |
| AAACAATTGTACAACCTCTT+AGG | 0.278337 | 1.3:+21710682 | MS.gene91099:CDS |
| TGCAAAATTGTTTCTCCAAT+TGG | 0.295134 | 1.3:+21710603 | MS.gene91099:CDS |
| GCTCCCGAGGCTTCTAAATA+TGG | 0.295796 | 1.3:+21710437 | MS.gene91099:CDS |
| TTCTGAACTGCAAAATCTAT+TGG | 0.303788 | 1.3:-21710896 | None:intergenic |
| CAAATCGAATGAACTTGATT+TGG | 0.304291 | 1.3:+21710319 | MS.gene91099:CDS |
| AGTTCCTCATATGGAATTAT+AGG | 0.316333 | 1.3:-21712104 | None:intergenic |
| GAGAAGGGAACAGTTGAGTA+TGG | 0.324983 | 1.3:+21710973 | MS.gene91099:CDS |
| CGATAAGAAGCCGAGTCTTC+GGG | 0.334652 | 1.3:-21712188 | None:intergenic |
| TTTGTGATTGGTTTCCATTT+GGG | 0.338236 | 1.3:+21712042 | MS.gene91099:CDS |
| ATTTGTGATTGGTTTCCATT+TGG | 0.338839 | 1.3:+21712041 | MS.gene91099:CDS |
| TTACAAAGAAGTTCCTCATA+TGG | 0.344918 | 1.3:-21712113 | None:intergenic |
| GGATGGTAAACTGGACATTC+TGG | 0.345953 | 1.3:-21710368 | None:intergenic |
| TTACCATGGAAAAGGCAAAT+TGG | 0.347643 | 1.3:-21712389 | None:intergenic |
| TGTTCTGATGGATGGTAAAC+TGG | 0.349116 | 1.3:-21710377 | None:intergenic |
| ACGATAAGAAGCCGAGTCTT+CGG | 0.354055 | 1.3:-21712189 | None:intergenic |
| TATATCCATCTCATTCCATT+TGG | 0.359513 | 1.3:-21710709 | None:intergenic |
| CTCGTTCCAAGTTTGTCATC+AGG | 0.367879 | 1.3:-21711030 | None:intergenic |
| GACAAACTCAGCAGAATTAG+AGG | 0.367979 | 1.3:-21710628 | None:intergenic |
| TAAACTTTGCTATTTGTGAT+TGG | 0.381553 | 1.3:+21712030 | MS.gene91099:CDS |
| CTTGTTACAACATGATGTTC+CGG | 0.394142 | 1.3:+21711774 | MS.gene91099:CDS |
| AACGAGCAAATTGAATTTGA+AGG | 0.422359 | 1.3:+21711047 | MS.gene91099:CDS |
| ACAAGAATTTGAGCATCCTT+TGG | 0.422698 | 1.3:+21710397 | MS.gene91099:CDS |
| TCATGTTGTAACAAGACATT+AGG | 0.439737 | 1.3:-21711766 | None:intergenic |
| ACCAAAAGCAGAATGATAAT+CGG | 0.444973 | 1.3:+21712803 | MS.gene91099:intron |
| TGCTCAAATTCTTGTTCTGA+TGG | 0.458499 | 1.3:-21710389 | None:intergenic |
| GCTACCTATAATTCCATATG+AGG | 0.458631 | 1.3:+21712100 | MS.gene91099:CDS |
| CTGATCCTATGCTTTACATT+GGG | 0.461409 | 1.3:+21711434 | MS.gene91099:CDS |
| ACTGTCTTAAATCATGTGTA+TGG | 0.461645 | 1.3:+21711670 | MS.gene91099:CDS |
| TTTCTTGCTGCATCCCCAAA+TGG | 0.465026 | 1.3:-21712056 | None:intergenic |
| ACATGATGTTCCGGTTTACA+AGG | 0.469206 | 1.3:+21711783 | MS.gene91099:CDS |
| TTCCATTTGGAAAGCCTAAG+AGG | 0.471534 | 1.3:-21710696 | None:intergenic |
| TACAAGGCGGTGCAAAAGCC+AGG | 0.481676 | 1.3:+21711799 | MS.gene91099:CDS |
| GCAGAATTAGAGGCACCAAT+TGG | 0.481782 | 1.3:-21710618 | None:intergenic |
| AACCTCTTAGGCTTTCCAAA+TGG | 0.483332 | 1.3:+21710694 | MS.gene91099:CDS |
| ACTGATCCTATGCTTTACAT+TGG | 0.488180 | 1.3:+21711433 | MS.gene91099:CDS |
| ATTTGAGGCTGTTGCAAACA+AGG | 0.488264 | 1.3:+21710867 | MS.gene91099:CDS |
| TTGAAGATCACTATTTGTAC+AGG | 0.488775 | 1.3:+21711485 | MS.gene91099:CDS |
| TTTCCAAATTCATATCATGC+TGG | 0.496493 | 1.3:+21711838 | MS.gene91099:CDS |
| ATTTACATATCAAGAATTTG+AGG | 0.498743 | 1.3:+21710852 | MS.gene91099:CDS |
| GGTGCAAATAAAACTTGGTA+TGG | 0.503293 | 1.3:+21711613 | MS.gene91099:CDS |
| CAAATTCTTGTTCTGATGGA+TGG | 0.515818 | 1.3:-21710385 | None:intergenic |
| TGCTATTCAGTATGTTTGCA+TGG | 0.518171 | 1.3:+21711458 | MS.gene91099:CDS |
| TTGTGATTGGTTTCCATTTG+GGG | 0.521261 | 1.3:+21712043 | MS.gene91099:CDS |
| TTAGAAGAACATGGAGAGAA+TGG | 0.523633 | 1.3:+21711703 | MS.gene91099:CDS |
| TTACCTTCCTCTCTTAGAGA+AGG | 0.529901 | 1.3:-21710736 | None:intergenic |
| TGTTGTAACAAGACATTAGG+AGG | 0.534027 | 1.3:-21711763 | None:intergenic |
| CCTCTGTCAACTAAACGTAA+TGG | 0.536420 | 1.3:-21711319 | None:intergenic |
| ACTCAGGTGCAAATAAAACT+TGG | 0.537060 | 1.3:+21711608 | MS.gene91099:CDS |
| GAAATGATACATGGAGAGAA+GGG | 0.538499 | 1.3:+21710958 | MS.gene91099:CDS |
| CAGAAGCAAACCCGAAGACT+CGG | 0.545114 | 1.3:+21712178 | MS.gene91099:CDS |
| AATTGAGAGTCTGCAGAGCT+AGG | 0.546207 | 1.3:-21711640 | None:intergenic |
| TGAAATGATACATGGAGAGA+AGG | 0.549346 | 1.3:+21710957 | MS.gene91099:CDS |
| GAGTATGGAGTCAACATTGA+GGG | 0.553863 | 1.3:+21710988 | MS.gene91099:CDS |
| ATGGAAAAGGCAAATTGGAT+AGG | 0.554570 | 1.3:-21712384 | None:intergenic |
| TGTGATCCTGATGACAAACT+TGG | 0.555148 | 1.3:+21711024 | MS.gene91099:CDS |
| GCTTTCCAAATGGAATGAGA+TGG | 0.557790 | 1.3:+21710704 | MS.gene91099:CDS |
| TAACCTTCTCTAAGAGAGGA+AGG | 0.559927 | 1.3:+21710733 | MS.gene91099:CDS |
| ATACCATATTTAGAAGCCTC+GGG | 0.566769 | 1.3:-21710440 | None:intergenic |
| CAAGACATTAGGAGGGAACA+TGG | 0.568622 | 1.3:-21711755 | None:intergenic |
| CATACCATATTTAGAAGCCT+CGG | 0.570675 | 1.3:-21710441 | None:intergenic |
| AAGGTTATGACAAACTCTCC+TGG | 0.572293 | 1.3:-21711817 | None:intergenic |
| ACAGTGTTGAAAAGAATCAA+AGG | 0.573208 | 1.3:+21712872 | MS.gene91099:CDS |
| TTCTGGCATGAAATGATACA+TGG | 0.578282 | 1.3:+21710949 | MS.gene91099:CDS |
| ATAATAACCTTCTCTAAGAG+AGG | 0.584975 | 1.3:+21710729 | MS.gene91099:CDS |
| TCTACAGAAAATTGCTCCCG+AGG | 0.589922 | 1.3:+21710424 | MS.gene91099:CDS |
| ATGTATCATTTCATGCCAGA+AGG | 0.592357 | 1.3:-21710947 | None:intergenic |
| AGCATGATATGAATTTGGAA+AGG | 0.606277 | 1.3:-21711836 | None:intergenic |
| CCATTACGTTTAGTTGACAG+AGG | 0.607075 | 1.3:+21711319 | MS.gene91099:CDS |
| TATCATGCTGGATTCAGTCA+TGG | 0.618286 | 1.3:+21711850 | MS.gene91099:CDS |
| AGCATCCCAATGTAAAGCAT+AGG | 0.618659 | 1.3:-21711439 | None:intergenic |
| AGCATAAATTACCATCACTC+AGG | 0.628951 | 1.3:+21711592 | MS.gene91099:intron |
| AAGTGCTAGAAGAACTGTCA+CGG | 0.657801 | 1.3:+21712837 | MS.gene91099:CDS |
| TGAGTATGGAGTCAACATTG+AGG | 0.665976 | 1.3:+21710987 | MS.gene91099:CDS |
| AACAAAGTCTTAGAAGAACA+TGG | 0.671008 | 1.3:+21711694 | MS.gene91099:CDS |
| TGATGTTCCGGTTTACAAGG+CGG | 0.676766 | 1.3:+21711786 | MS.gene91099:CDS |
| GTTGTAACAAGACATTAGGA+GGG | 0.697642 | 1.3:-21711762 | None:intergenic |
| ACTAAACGTAATGGAGACTG+CGG | 0.718204 | 1.3:-21711310 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTCTGTTTTATAATTTTA+GGG | + | chr1.3:21711406-21711425 | MS.gene91099:intron | 10.0% |
| !!! | TAATTCTGTTTTATAATTTT+AGG | + | chr1.3:21711405-21711424 | MS.gene91099:intron | 10.0% |
| !! | GATGAAAAAATAAACTAATT+TGG | + | chr1.3:21710804-21710823 | MS.gene91099:intron | 15.0% |
| !!! | AGTTTATTTTTTCATCATTT+AGG | - | chr1.3:21710800-21710819 | None:intergenic | 15.0% |
| !!! | TAGTATATGTTTTTTTTTTC+AGG | + | chr1.3:21710576-21710595 | MS.gene91099:intron | 15.0% |
| !!! | TTTCATTTGATTTTAGAATT+TGG | + | chr1.3:21711279-21711298 | MS.gene91099:intron | 15.0% |
| !! | AAAAAGATGTTAATAGAGAA+AGG | - | chr1.3:21711121-21711140 | None:intergenic | 20.0% |
| !! | ATTTACATATCAAGAATTTG+AGG | + | chr1.3:21710852-21710871 | MS.gene91099:CDS | 20.0% |
| !! | GTAATAACTTAATCAATACT+AGG | - | chr1.3:21711373-21711392 | None:intergenic | 20.0% |
| !!! | TTTTACCTTTTCAAAACTTT+TGG | - | chr1.3:21712579-21712598 | None:intergenic | 20.0% |
| ! | AATTCTCAAATAGACTAATG+AGG | - | chr1.3:21712417-21712436 | None:intergenic | 25.0% |
| ! | AGATCTTCAAATACATCATT+AGG | + | chr1.3:21712293-21712312 | MS.gene91099:intron | 25.0% |
| ! | GTTGTAATATTCTTCTGTAA+GGG | + | chr1.3:21711235-21711254 | MS.gene91099:intron | 25.0% |
| ! | TGTCTTAATGAAAGAGAAAA+AGG | + | chr1.3:21710647-21710666 | MS.gene91099:CDS | 25.0% |
| ! | TGTTGTAATATTCTTCTGTA+AGG | + | chr1.3:21711234-21711253 | MS.gene91099:intron | 25.0% |
| !! | ATTCATTTTCTTGTGAGTTT+AGG | + | chr1.3:21711987-21712006 | MS.gene91099:intron | 25.0% |
| !! | ATTTTCTGTAGATAAACCAA+AGG | - | chr1.3:21710416-21710435 | None:intergenic | 25.0% |
| !! | TGAAGATTTTCAGAATCATT+TGG | - | chr1.3:21711172-21711191 | None:intergenic | 25.0% |
| !!! | TAAACTTTGCTATTTGTGAT+TGG | + | chr1.3:21712030-21712049 | MS.gene91099:CDS | 25.0% |
| !!! | TTGATTTGGATGATCTAAAT+TGG | + | chr1.3:21710333-21710352 | MS.gene91099:CDS | 25.0% |
| AAACAATTGTACAACCTCTT+AGG | + | chr1.3:21710682-21710701 | MS.gene91099:CDS | 30.0% | |
| AACAAAGTCTTAGAAGAACA+TGG | + | chr1.3:21711694-21711713 | MS.gene91099:CDS | 30.0% | |
| AACGAGCAAATTGAATTTGA+AGG | + | chr1.3:21711047-21711066 | MS.gene91099:CDS | 30.0% | |
| AATCCAGCATGATATGAATT+TGG | - | chr1.3:21711844-21711863 | None:intergenic | 30.0% | |
| ACCAAAAGCAGAATGATAAT+CGG | + | chr1.3:21712803-21712822 | MS.gene91099:intron | 30.0% | |
| ACTGTCTTAAATCATGTGTA+TGG | + | chr1.3:21711670-21711689 | MS.gene91099:CDS | 30.0% | |
| AGCATGATATGAATTTGGAA+AGG | - | chr1.3:21711839-21711858 | None:intergenic | 30.0% | |
| AGTTCCTCATATGGAATTAT+AGG | - | chr1.3:21712107-21712126 | None:intergenic | 30.0% | |
| CAAATCGAATGAACTTGATT+TGG | + | chr1.3:21710319-21710338 | MS.gene91099:CDS | 30.0% | |
| CTCTGCATTACTTCATATTT+AGG | + | chr1.3:21712731-21712750 | MS.gene91099:intron | 30.0% | |
| TATATCCATCTCATTCCATT+TGG | - | chr1.3:21710712-21710731 | None:intergenic | 30.0% | |
| TCAATACTAGGTTCCAAAAA+TGG | - | chr1.3:21711361-21711380 | None:intergenic | 30.0% | |
| TCATGTTGTAACAAGACATT+AGG | - | chr1.3:21711769-21711788 | None:intergenic | 30.0% | |
| TGGTGTGATTATGTTTATGT+TGG | + | chr1.3:21711907-21711926 | MS.gene91099:intron | 30.0% | |
| TTACAAAGAAGTTCCTCATA+TGG | - | chr1.3:21712116-21712135 | None:intergenic | 30.0% | |
| TTCTGAACTGCAAAATCTAT+TGG | - | chr1.3:21710899-21710918 | None:intergenic | 30.0% | |
| TTGAAGATCACTATTTGTAC+AGG | + | chr1.3:21711485-21711504 | MS.gene91099:CDS | 30.0% | |
| TTTCCAAATTCATATCATGC+TGG | + | chr1.3:21711838-21711857 | MS.gene91099:CDS | 30.0% | |
| TTTGATGCACTCAATTGTAA+AGG | - | chr1.3:21712620-21712639 | None:intergenic | 30.0% | |
| ! | ACAGTGTTGAAAAGAATCAA+AGG | + | chr1.3:21712872-21712891 | MS.gene91099:CDS | 30.0% |
| ! | ATAATAACCTTCTCTAAGAG+AGG | + | chr1.3:21710729-21710748 | MS.gene91099:CDS | 30.0% |
| ! | TGCAAAATTGTTTCTCCAAT+TGG | + | chr1.3:21710603-21710622 | MS.gene91099:CDS | 30.0% |
| ! | TTCCAAAAACTTGCTTATGT+CGG | + | chr1.3:21712501-21712520 | MS.gene91099:CDS | 30.0% |
| ! | TTTCGATTTTGCACTAGATA+GGG | - | chr1.3:21711949-21711968 | None:intergenic | 30.0% |
| !! | ATTTGTGATTGGTTTCCATT+TGG | + | chr1.3:21712041-21712060 | MS.gene91099:CDS | 30.0% |
| !! | TTTGTGATTGGTTTCCATTT+GGG | + | chr1.3:21712042-21712061 | MS.gene91099:CDS | 30.0% |
| !!! | TTGTTTTTTGAGCAAGCAAT+TGG | - | chr1.3:21711735-21711754 | None:intergenic | 30.0% |
| !!! | TTTGATTTTAGAATTTGGCG+CGG | + | chr1.3:21711284-21711303 | MS.gene91099:intron | 30.0% |
| AAGCTACATAACAATCCCTA+TGG | - | chr1.3:21712340-21712359 | None:intergenic | 35.0% | |
| ACAAGAATTTGAGCATCCTT+TGG | + | chr1.3:21710397-21710416 | MS.gene91099:CDS | 35.0% | |
| ACTCAGGTGCAAATAAAACT+TGG | + | chr1.3:21711608-21711627 | MS.gene91099:CDS | 35.0% | |
| ACTGATCCTATGCTTTACAT+TGG | + | chr1.3:21711433-21711452 | MS.gene91099:CDS | 35.0% | |
| AGCATAAATTACCATCACTC+AGG | + | chr1.3:21711592-21711611 | MS.gene91099:intron | 35.0% | |
| ATACCATATTTAGAAGCCTC+GGG | - | chr1.3:21710443-21710462 | None:intergenic | 35.0% | |
| ATGGAAAAGGCAAATTGGAT+AGG | - | chr1.3:21712387-21712406 | None:intergenic | 35.0% | |
| ATGTATCATTTCATGCCAGA+AGG | - | chr1.3:21710950-21710969 | None:intergenic | 35.0% | |
| CAAATTCTTGTTCTGATGGA+TGG | - | chr1.3:21710388-21710407 | None:intergenic | 35.0% | |
| CATACCATATTTAGAAGCCT+CGG | - | chr1.3:21710444-21710463 | None:intergenic | 35.0% | |
| CTGATCCTATGCTTTACATT+GGG | + | chr1.3:21711434-21711453 | MS.gene91099:CDS | 35.0% | |
| CTTGTTACAACATGATGTTC+CGG | + | chr1.3:21711774-21711793 | MS.gene91099:CDS | 35.0% | |
| GAAATGATACATGGAGAGAA+GGG | + | chr1.3:21710958-21710977 | MS.gene91099:CDS | 35.0% | |
| GCTACCTATAATTCCATATG+AGG | + | chr1.3:21712100-21712119 | MS.gene91099:CDS | 35.0% | |
| GGTGCAAATAAAACTTGGTA+TGG | + | chr1.3:21711613-21711632 | MS.gene91099:CDS | 35.0% | |
| GTTGTAACAAGACATTAGGA+GGG | - | chr1.3:21711765-21711784 | None:intergenic | 35.0% | |
| TAGAGAAAGGAAACACAGAA+CGG | - | chr1.3:21711108-21711127 | None:intergenic | 35.0% | |
| TAGATATCGAAAAAGCCTTC+TGG | + | chr1.3:21710932-21710951 | MS.gene91099:CDS | 35.0% | |
| TGAAATGATACATGGAGAGA+AGG | + | chr1.3:21710957-21710976 | MS.gene91099:CDS | 35.0% | |
| TGCTATTCAGTATGTTTGCA+TGG | + | chr1.3:21711458-21711477 | MS.gene91099:CDS | 35.0% | |
| TGCTCAAATTCTTGTTCTGA+TGG | - | chr1.3:21710392-21710411 | None:intergenic | 35.0% | |
| TGTTGTAACAAGACATTAGG+AGG | - | chr1.3:21711766-21711785 | None:intergenic | 35.0% | |
| TTACCATGGAAAAGGCAAAT+TGG | - | chr1.3:21712392-21712411 | None:intergenic | 35.0% | |
| TTAGAAGAACATGGAGAGAA+TGG | + | chr1.3:21711703-21711722 | MS.gene91099:CDS | 35.0% | |
| TTCTGGCATGAAATGATACA+TGG | + | chr1.3:21710949-21710968 | MS.gene91099:CDS | 35.0% | |
| ! | AGACTAATGAGGTTTTACCA+TGG | - | chr1.3:21712406-21712425 | None:intergenic | 35.0% |
| ! | ATGAGGTTTTACCATGGAAA+AGG | - | chr1.3:21712400-21712419 | None:intergenic | 35.0% |
| ! | ATTTTGCACTAGATAGGGAT+AGG | - | chr1.3:21711944-21711963 | None:intergenic | 35.0% |
| ! | CTTCTTATCGTGCTATTGTA+CGG | + | chr1.3:21712201-21712220 | MS.gene91099:intron | 35.0% |
| ! | CTTTCGATTTTGCACTAGAT+AGG | - | chr1.3:21711950-21711969 | None:intergenic | 35.0% |
| ! | TATCCAATTTGCCTTTTCCA+TGG | + | chr1.3:21712386-21712405 | MS.gene91099:CDS | 35.0% |
| ! | TCCAAAAACTTGCTTATGTC+GGG | + | chr1.3:21712502-21712521 | MS.gene91099:CDS | 35.0% |
| !! | TTGTGATTGGTTTCCATTTG+GGG | + | chr1.3:21712043-21712062 | MS.gene91099:CDS | 35.0% |
| !! | TTTTATTTGCACCTGAGTGA+TGG | - | chr1.3:21711606-21711625 | None:intergenic | 35.0% |
| !!! | CTTTTGGTTTCAGTTTCGAA+AGG | - | chr1.3:21712791-21712810 | None:intergenic | 35.0% |
| !!! | GTGAGTTTAGGTTTTAACTG+TGG | + | chr1.3:21711999-21712018 | MS.gene91099:intron | 35.0% |
| !!! | TGCTGCCAAAAGTTTTGAAA+AGG | + | chr1.3:21712571-21712590 | MS.gene91099:CDS | 35.0% |
| AACCTCTTAGGCTTTCCAAA+TGG | + | chr1.3:21710694-21710713 | MS.gene91099:CDS | 40.0% | |
| AAGGTTATGACAAACTCTCC+TGG | - | chr1.3:21711820-21711839 | None:intergenic | 40.0% | |
| AAGTGCTAGAAGAACTGTCA+CGG | + | chr1.3:21712837-21712856 | MS.gene91099:CDS | 40.0% | |
| ACATGATGTTCCGGTTTACA+AGG | + | chr1.3:21711783-21711802 | MS.gene91099:CDS | 40.0% | |
| AGCATCCCAATGTAAAGCAT+AGG | - | chr1.3:21711442-21711461 | None:intergenic | 40.0% | |
| CCATTACGTTTAGTTGACAG+AGG | + | chr1.3:21711319-21711338 | MS.gene91099:CDS | 40.0% | |
| CCTCTGTCAACTAAACGTAA+TGG | - | chr1.3:21711322-21711341 | None:intergenic | 40.0% | |
| GACAAACTCAGCAGAATTAG+AGG | - | chr1.3:21710631-21710650 | None:intergenic | 40.0% | |
| GAGTATGGAGTCAACATTGA+GGG | + | chr1.3:21710988-21711007 | MS.gene91099:CDS | 40.0% | |
| GCTTTCCAAATGGAATGAGA+TGG | + | chr1.3:21710704-21710723 | MS.gene91099:CDS | 40.0% | |
| TATCATGCTGGATTCAGTCA+TGG | + | chr1.3:21711850-21711869 | MS.gene91099:CDS | 40.0% | |
| TCCAAAAATGGCTTCCTTAC+AGG | - | chr1.3:21711349-21711368 | None:intergenic | 40.0% | |
| TGAGTATGGAGTCAACATTG+AGG | + | chr1.3:21710987-21711006 | MS.gene91099:CDS | 40.0% | |
| TGTGATCCTGATGACAAACT+TGG | + | chr1.3:21711024-21711043 | MS.gene91099:CDS | 40.0% | |
| TTACCTTCCTCTCTTAGAGA+AGG | - | chr1.3:21710739-21710758 | None:intergenic | 40.0% | |
| TTCCATTTGGAAAGCCTAAG+AGG | - | chr1.3:21710699-21710718 | None:intergenic | 40.0% | |
| TTGACAGAGGAATTCCTGTA+AGG | + | chr1.3:21711332-21711351 | MS.gene91099:intron | 40.0% | |
| ! | ACTAAACGTAATGGAGACTG+CGG | - | chr1.3:21711313-21711332 | None:intergenic | 40.0% |
| ! | ATTTGAGGCTGTTGCAAACA+AGG | + | chr1.3:21710867-21710886 | MS.gene91099:CDS | 40.0% |
| ! | CCAAAAACTTGCTTATGTCG+GGG | + | chr1.3:21712503-21712522 | MS.gene91099:CDS | 40.0% |
| ! | GCCGATTATCATTCTGCTTT+TGG | - | chr1.3:21712807-21712826 | None:intergenic | 40.0% |
| ! | TAACCTTCTCTAAGAGAGGA+AGG | + | chr1.3:21710733-21710752 | MS.gene91099:CDS | 40.0% |
| ! | TCTGCAACTTCTGACTTTTG+AGG | - | chr1.3:21712162-21712181 | None:intergenic | 40.0% |
| ! | TGTTCTGATGGATGGTAAAC+TGG | - | chr1.3:21710380-21710399 | None:intergenic | 40.0% |
| !! | TCCTGTAAGGAAGCCATTTT+TGG | + | chr1.3:21711345-21711364 | MS.gene91099:intron | 40.0% |
| AACACATGTACAGAGAGAGG+GGG | - | chr1.3:21711888-21711907 | None:intergenic | 45.0% | |
| AATTGAGAGTCTGCAGAGCT+AGG | - | chr1.3:21711643-21711662 | None:intergenic | 45.0% | |
| ACCAACACATGTACAGAGAG+AGG | - | chr1.3:21711891-21711910 | None:intergenic | 45.0% | |
| ACGATAAGAAGCCGAGTCTT+CGG | - | chr1.3:21712192-21712211 | None:intergenic | 45.0% | |
| CAACACATGTACAGAGAGAG+GGG | - | chr1.3:21711889-21711908 | None:intergenic | 45.0% | |
| CAAGACATTAGGAGGGAACA+TGG | - | chr1.3:21711758-21711777 | None:intergenic | 45.0% | |
| CATAACAATCCCTATGGCAG+AGG | - | chr1.3:21712334-21712353 | None:intergenic | 45.0% | |
| CCAACACATGTACAGAGAGA+GGG | - | chr1.3:21711890-21711909 | None:intergenic | 45.0% | |
| CTCGTTCCAAGTTTGTCATC+AGG | - | chr1.3:21711033-21711052 | None:intergenic | 45.0% | |
| GAGAAGGGAACAGTTGAGTA+TGG | + | chr1.3:21710973-21710992 | MS.gene91099:CDS | 45.0% | |
| GGATGGTAAACTGGACATTC+TGG | - | chr1.3:21710371-21710390 | None:intergenic | 45.0% | |
| TCTACAGAAAATTGCTCCCG+AGG | + | chr1.3:21710424-21710443 | MS.gene91099:CDS | 45.0% | |
| TGATGTTCCGGTTTACAAGG+CGG | + | chr1.3:21711786-21711805 | MS.gene91099:CDS | 45.0% | |
| TTTCTTGCTGCATCCCCAAA+TGG | - | chr1.3:21712059-21712078 | None:intergenic | 45.0% | |
| ! | CCCCGACATAAGCAAGTTTT+TGG | - | chr1.3:21712506-21712525 | None:intergenic | 45.0% |
| ! | TTACGCATGCGCAGAGTTTT+AGG | - | chr1.3:21710539-21710558 | None:intergenic | 45.0% |
| ! | TTTTGCACCGCCTTGTAAAC+CGG | - | chr1.3:21711796-21711815 | None:intergenic | 45.0% |
| !! | GCAGAATTAGAGGCACCAAT+TGG | - | chr1.3:21710621-21710640 | None:intergenic | 45.0% |
| CAGAAGCAAACCCGAAGACT+CGG | + | chr1.3:21712178-21712197 | MS.gene91099:CDS | 50.0% | |
| CCCTCTCTCTGTACATGTGT+TGG | + | chr1.3:21711887-21711906 | MS.gene91099:intron | 50.0% | |
| CGATAAGAAGCCGAGTCTTC+GGG | - | chr1.3:21712191-21712210 | None:intergenic | 50.0% | |
| GCTCCCGAGGCTTCTAAATA+TGG | + | chr1.3:21710437-21710456 | MS.gene91099:CDS | 50.0% | |
| GACATGCAGCCTCTGCCATA+GGG | + | chr1.3:21712322-21712341 | MS.gene91099:intron | 55.0% | |
| TACAAGGCGGTGCAAAAGCC+AGG | + | chr1.3:21711799-21711818 | MS.gene91099:CDS | 55.0% | |
| TGACATGCAGCCTCTGCCAT+AGG | + | chr1.3:21712321-21712340 | MS.gene91099:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 21710293 | 21712937 | 21710293 | ID=MS.gene91099 |
| chr1.3 | mRNA | 21710293 | 21712937 | 21710293 | ID=MS.gene91099.t1;Parent=MS.gene91099 |
| chr1.3 | exon | 21710293 | 21710458 | 21710293 | ID=MS.gene91099.t1.exon1;Parent=MS.gene91099.t1 |
| chr1.3 | CDS | 21710293 | 21710458 | 21710293 | ID=cds.MS.gene91099.t1;Parent=MS.gene91099.t1 |
| chr1.3 | exon | 21710598 | 21710754 | 21710598 | ID=MS.gene91099.t1.exon2;Parent=MS.gene91099.t1 |
| chr1.3 | CDS | 21710598 | 21710754 | 21710598 | ID=cds.MS.gene91099.t1;Parent=MS.gene91099.t1 |
| chr1.3 | exon | 21710849 | 21711068 | 21710849 | ID=MS.gene91099.t1.exon3;Parent=MS.gene91099.t1 |
| chr1.3 | CDS | 21710849 | 21711068 | 21710849 | ID=cds.MS.gene91099.t1;Parent=MS.gene91099.t1 |
| chr1.3 | exon | 21711295 | 21711348 | 21711295 | ID=MS.gene91099.t1.exon4;Parent=MS.gene91099.t1 |
| chr1.3 | CDS | 21711295 | 21711348 | 21711295 | ID=cds.MS.gene91099.t1;Parent=MS.gene91099.t1 |
| chr1.3 | exon | 21711427 | 21711506 | 21711427 | ID=MS.gene91099.t1.exon5;Parent=MS.gene91099.t1 |
| chr1.3 | CDS | 21711427 | 21711506 | 21711427 | ID=cds.MS.gene91099.t1;Parent=MS.gene91099.t1 |
| chr1.3 | exon | 21711594 | 21711871 | 21711594 | ID=MS.gene91099.t1.exon6;Parent=MS.gene91099.t1 |
| chr1.3 | CDS | 21711594 | 21711871 | 21711594 | ID=cds.MS.gene91099.t1;Parent=MS.gene91099.t1 |
| chr1.3 | exon | 21712009 | 21712217 | 21712009 | ID=MS.gene91099.t1.exon7;Parent=MS.gene91099.t1 |
| chr1.3 | CDS | 21712009 | 21712217 | 21712009 | ID=cds.MS.gene91099.t1;Parent=MS.gene91099.t1 |
| chr1.3 | exon | 21712357 | 21712407 | 21712357 | ID=MS.gene91099.t1.exon8;Parent=MS.gene91099.t1 |
| chr1.3 | CDS | 21712357 | 21712407 | 21712357 | ID=cds.MS.gene91099.t1;Parent=MS.gene91099.t1 |
| chr1.3 | exon | 21712495 | 21712592 | 21712495 | ID=MS.gene91099.t1.exon9;Parent=MS.gene91099.t1 |
| chr1.3 | CDS | 21712495 | 21712592 | 21712495 | ID=cds.MS.gene91099.t1;Parent=MS.gene91099.t1 |
| chr1.3 | exon | 21712814 | 21712937 | 21712814 | ID=MS.gene91099.t1.exon10;Parent=MS.gene91099.t1 |
| chr1.3 | CDS | 21712814 | 21712937 | 21712814 | ID=cds.MS.gene91099.t1;Parent=MS.gene91099.t1 |
| Gene Sequence |
| Protein sequence |
