Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91101.t1 | RHN78372.1 | 87.5 | 578 | 54 | 1 | 1 | 578 | 1 | 560 | 1.60E-293 | 1018.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91101.t1 | Q336N8 | 52.3 | 470 | 213 | 5 | 6 | 469 | 101 | 565 | 5.4e-136 | 486.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91101.t1 | A0A396JLW8 | 87.5 | 578 | 54 | 1 | 1 | 578 | 1 | 560 | 1.2e-293 | 1018.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene91101.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91101.t1 | MTR_1g038370 | 89.446 | 578 | 41 | 1 | 1 | 578 | 1 | 558 | 0.0 | 1069 |
| MS.gene91101.t1 | MTR_1g038400 | 76.399 | 572 | 107 | 3 | 2 | 571 | 22 | 567 | 0.0 | 880 |
| MS.gene91101.t1 | MTR_5g029370 | 52.209 | 498 | 231 | 3 | 2 | 493 | 83 | 579 | 0.0 | 546 |
| MS.gene91101.t1 | MTR_5g029370 | 52.209 | 498 | 231 | 3 | 2 | 493 | 83 | 579 | 0.0 | 546 |
| MS.gene91101.t1 | MTR_7g407000 | 79.861 | 144 | 11 | 2 | 181 | 323 | 28 | 154 | 3.56e-75 | 236 |
| MS.gene91101.t1 | MTR_3g075210 | 37.222 | 360 | 190 | 8 | 8 | 346 | 18 | 362 | 3.40e-66 | 234 |
| MS.gene91101.t1 | MTR_8g089260 | 31.579 | 551 | 288 | 16 | 4 | 476 | 29 | 568 | 3.17e-58 | 210 |
| MS.gene91101.t1 | MTR_1g078070 | 30.171 | 527 | 278 | 15 | 6 | 454 | 148 | 662 | 1.63e-53 | 197 |
| MS.gene91101.t1 | MTR_1g078070 | 30.171 | 527 | 278 | 15 | 6 | 454 | 148 | 662 | 2.45e-53 | 196 |
| MS.gene91101.t1 | MTR_5g010300 | 33.256 | 433 | 213 | 15 | 109 | 511 | 323 | 709 | 2.65e-52 | 194 |
| MS.gene91101.t1 | MTR_5g010300 | 33.256 | 433 | 213 | 15 | 109 | 511 | 323 | 709 | 2.68e-52 | 194 |
| MS.gene91101.t1 | MTR_5g010300 | 33.256 | 433 | 213 | 15 | 109 | 511 | 323 | 709 | 2.83e-52 | 193 |
| MS.gene91101.t1 | MTR_5g010300 | 40.845 | 284 | 131 | 8 | 109 | 365 | 323 | 596 | 5.17e-52 | 193 |
| MS.gene91101.t1 | MTR_1g094740 | 44.149 | 188 | 101 | 1 | 152 | 339 | 291 | 474 | 1.20e-50 | 189 |
| MS.gene91101.t1 | MTR_2g047130 | 33.249 | 397 | 227 | 13 | 134 | 502 | 232 | 618 | 1.32e-44 | 170 |
| MS.gene91101.t1 | MTR_2g047130 | 33.249 | 397 | 227 | 13 | 134 | 502 | 229 | 615 | 1.35e-44 | 170 |
| MS.gene91101.t1 | MTR_7g097070 | 30.794 | 315 | 194 | 10 | 156 | 455 | 338 | 643 | 3.26e-29 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91101.t1 | AT5G46910 | 54.412 | 476 | 212 | 5 | 7 | 479 | 102 | 575 | 0.0 | 537 |
| MS.gene91101.t1 | AT5G46910 | 54.412 | 476 | 212 | 5 | 7 | 479 | 102 | 575 | 0.0 | 536 |
| MS.gene91101.t1 | AT2G34880 | 31.520 | 533 | 283 | 14 | 7 | 470 | 60 | 579 | 1.44e-60 | 215 |
| MS.gene91101.t1 | AT3G48430 | 34.865 | 370 | 197 | 8 | 8 | 339 | 20 | 383 | 3.65e-59 | 214 |
| MS.gene91101.t1 | AT1G30810 | 30.297 | 538 | 288 | 13 | 4 | 466 | 55 | 580 | 1.87e-57 | 206 |
| MS.gene91101.t1 | AT1G30810 | 30.297 | 538 | 288 | 13 | 4 | 466 | 55 | 580 | 1.87e-57 | 206 |
| MS.gene91101.t1 | AT1G30810 | 30.297 | 538 | 288 | 13 | 4 | 466 | 55 | 580 | 1.87e-57 | 206 |
| MS.gene91101.t1 | AT1G63490 | 42.642 | 265 | 126 | 6 | 93 | 340 | 52 | 307 | 9.33e-56 | 204 |
| MS.gene91101.t1 | AT1G63490 | 42.803 | 264 | 125 | 6 | 94 | 340 | 306 | 560 | 1.11e-55 | 204 |
| MS.gene91101.t1 | AT1G63490 | 42.803 | 264 | 125 | 6 | 94 | 340 | 306 | 560 | 1.14e-55 | 204 |
| MS.gene91101.t1 | AT4G20400 | 27.438 | 605 | 339 | 17 | 4 | 528 | 52 | 636 | 1.30e-55 | 202 |
| MS.gene91101.t1 | AT4G20400 | 27.656 | 593 | 329 | 17 | 16 | 528 | 7 | 579 | 1.33e-52 | 193 |
| MS.gene91101.t1 | AT5G04240 | 45.213 | 188 | 99 | 1 | 152 | 339 | 259 | 442 | 4.03e-51 | 190 |
| MS.gene91101.t1 | AT1G08620 | 34.195 | 348 | 194 | 8 | 117 | 439 | 327 | 664 | 2.56e-45 | 172 |
| MS.gene91101.t1 | AT1G08620 | 34.195 | 348 | 194 | 8 | 117 | 439 | 313 | 650 | 3.15e-45 | 172 |
| MS.gene91101.t1 | AT1G08620 | 34.195 | 348 | 194 | 8 | 117 | 439 | 313 | 650 | 3.15e-45 | 172 |
| MS.gene91101.t1 | AT1G08620 | 34.195 | 348 | 194 | 8 | 117 | 439 | 313 | 650 | 3.15e-45 | 172 |
| MS.gene91101.t1 | AT2G38950 | 25.198 | 631 | 365 | 20 | 2 | 550 | 102 | 707 | 7.85e-34 | 137 |
| MS.gene91101.t1 | AT1G63490 | 54.023 | 87 | 40 | 0 | 254 | 340 | 15 | 101 | 2.67e-24 | 108 |
Find 74 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTACCGCAAAATCTTT+TGG | 0.222620 | 1.3:-21734786 | None:intergenic |
| TGACATGCAGCCTCTGCTTT+AGG | 0.237204 | 1.3:+21736528 | MS.gene91101:CDS |
| AATCCAGCATGATATGAATT+TGG | 0.254423 | 1.3:-21735681 | None:intergenic |
| GCTCCTGAGGCTTCTAAATA+TGG | 0.264118 | 1.3:+21734036 | MS.gene91101:CDS |
| TGTCTTAACGGAAGAGAAAA+AGG | 0.267528 | 1.3:+21734540 | MS.gene91101:CDS |
| GATGTATTCATTTATGTTAT+AGG | 0.277368 | 1.3:-21736852 | None:intergenic |
| TCCTGCAGTATCTTCCCTTT+TGG | 0.292966 | 1.3:+21737288 | MS.gene91101:CDS |
| GACATGCAGCCTCTGCTTTA+GGG | 0.297262 | 1.3:+21736529 | MS.gene91101:CDS |
| GAGAAAGGAACAGTTGAGTA+TGG | 0.324983 | 1.3:+21734863 | MS.gene91101:CDS |
| TTACAAAGAAGTTCCTCATA+TGG | 0.338097 | 1.3:-21736323 | None:intergenic |
| AGCTATTCAAATACATCATT+AGG | 0.343820 | 1.3:+21736500 | MS.gene91101:CDS |
| ATAAAGGACTCGTTGTCTTT+TGG | 0.343992 | 1.3:-21737227 | None:intergenic |
| TTACCATGGAAAAGGCAAAT+TGG | 0.359872 | 1.3:-21736596 | None:intergenic |
| GCTCGATAAGATGTGTCTTC+AGG | 0.367073 | 1.3:-21736398 | None:intergenic |
| AACAAGCAATTTCAATTTGA+AGG | 0.380018 | 1.3:+21734937 | MS.gene91101:CDS |
| TAAACTTTGCTATTGGTGAT+TGG | 0.380389 | 1.3:+21736240 | MS.gene91101:CDS |
| AGTTCCTCATATGGAAATAT+AGG | 0.388305 | 1.3:-21736314 | None:intergenic |
| CTCCTTTGCGTTTAGTTGAC+AGG | 0.388373 | 1.3:+21735144 | MS.gene91101:CDS |
| GACAAAAGAAGCAGGATTAG+AGG | 0.392437 | 1.3:-21734521 | None:intergenic |
| ACTGAAAGCAGAATAATAAC+TGG | 0.424878 | 1.3:+21737047 | MS.gene91101:intron |
| CTGATCCTATGCTTTACATT+GGG | 0.424948 | 1.3:+21735274 | MS.gene91101:CDS |
| TCAATTTGAAAAGACTGTCT+TGG | 0.425142 | 1.3:+21735497 | MS.gene91101:CDS |
| TGTTCTGATGGATAATAAGT+TGG | 0.426588 | 1.3:-21733976 | None:intergenic |
| TTCGATTTGAAAACTCTAAG+AGG | 0.430039 | 1.3:-21734589 | None:intergenic |
| CTTGTTCCAAGCTTATCATC+AGG | 0.440827 | 1.3:-21734920 | None:intergenic |
| TTGGTGATTGGTTTCCACTC+GGG | 0.449709 | 1.3:+21736252 | MS.gene91101:CDS |
| GAAGCTGTAAACTTTGCTAT+TGG | 0.453482 | 1.3:+21736233 | MS.gene91101:CDS |
| GCTACCTATATTTCCATATG+AGG | 0.458333 | 1.3:+21736310 | MS.gene91101:CDS |
| TGCTCAAACTCTTGTTCTGA+TGG | 0.476367 | 1.3:-21733988 | None:intergenic |
| TTACCATATTTAGAAGCCTC+AGG | 0.481047 | 1.3:-21734039 | None:intergenic |
| TACAAGGCGGTGCAAAAGCC+AGG | 0.481676 | 1.3:+21735639 | MS.gene91101:CDS |
| ATGAGGTCTTACCATGGAAA+AGG | 0.484485 | 1.3:-21736604 | None:intergenic |
| ACATAATGTGCCGGTTTACA+AGG | 0.487938 | 1.3:+21735623 | MS.gene91101:CDS |
| GTGCCACAAAATTGTTTATG+TGG | 0.488853 | 1.3:+21736716 | MS.gene91101:CDS |
| TACAACTCCTCAAAATATAG+AGG | 0.493143 | 1.3:+21736362 | MS.gene91101:CDS |
| ATTTGAAGCTCTTGCAAACA+AGG | 0.496352 | 1.3:+21734757 | MS.gene91101:CDS |
| TTTCCAAATTCATATCATGC+TGG | 0.496493 | 1.3:+21735678 | MS.gene91101:CDS |
| GACAACATACTGTATTTAAG+AGG | 0.498182 | 1.3:+21736741 | MS.gene91101:CDS |
| AGAAGAACTGTTAGCTCGCT+AGG | 0.501194 | 1.3:+21737088 | MS.gene91101:CDS |
| ATCATCAGGATCACTTGAAA+AGG | 0.501772 | 1.3:-21734906 | None:intergenic |
| GAAATAATACATGGAGAGAA+AGG | 0.501914 | 1.3:+21734848 | MS.gene91101:CDS |
| GGTGCAAATAAAACTTGGTA+TGG | 0.503293 | 1.3:+21735453 | MS.gene91101:CDS |
| ATTGGTGATTGGTTTCCACT+CGG | 0.503752 | 1.3:+21736251 | MS.gene91101:CDS |
| ACTGATCCTATGCTTTACAT+TGG | 0.515442 | 1.3:+21735273 | MS.gene91101:CDS |
| AGTGATCCTGATGATAAGCT+TGG | 0.516084 | 1.3:+21734914 | MS.gene91101:CDS |
| TGCTATTCAGTATGTTTGCA+TGG | 0.518171 | 1.3:+21735298 | MS.gene91101:CDS |
| TAGAAGATCACTATTTGTAC+AGG | 0.519294 | 1.3:+21735325 | MS.gene91101:CDS |
| TGGTGATTGGTTTCCACTCG+GGG | 0.519820 | 1.3:+21736253 | MS.gene91101:CDS |
| TCCGTTAAGACAAAAGAAGC+AGG | 0.523048 | 1.3:-21734529 | None:intergenic |
| AATTGAGAGGATGCAGAACT+AGG | 0.531709 | 1.3:-21735480 | None:intergenic |
| ACTCAGGTGCAAATAAAACT+TGG | 0.537060 | 1.3:+21735448 | MS.gene91101:CDS |
| TTATGTTCTAACAAGACATC+AGG | 0.538881 | 1.3:-21735606 | None:intergenic |
| CTTGTTAGAACATAATGTGC+CGG | 0.547471 | 1.3:+21735614 | MS.gene91101:CDS |
| AAGGTGATGACAAACTCTCC+TGG | 0.548617 | 1.3:-21735657 | None:intergenic |
| GCAGGATTAGAGGCAGCGAT+TGG | 0.560174 | 1.3:-21734511 | None:intergenic |
| TCTGCAGAAAATTGCTCCTG+AGG | 0.560467 | 1.3:+21734023 | MS.gene91101:CDS |
| TTTATAAGACATCATTATCA+CGG | 0.560917 | 1.3:+21736453 | MS.gene91101:CDS |
| CAAGACATCAGGAGAGAACA+TGG | 0.563327 | 1.3:-21735595 | None:intergenic |
| TGCCACAAAATTGTTTATGT+GGG | 0.576308 | 1.3:+21736717 | MS.gene91101:CDS |
| AACAAAGTCTTCACAGAACA+TGG | 0.579374 | 1.3:+21735534 | MS.gene91101:CDS |
| TATCATGCTGGATTTAGTCA+TGG | 0.587724 | 1.3:+21735690 | MS.gene91101:CDS |
| TTCTGGCACGAAATAATACA+TGG | 0.588933 | 1.3:+21734839 | MS.gene91101:CDS |
| GCCAAAAGGGAAGATACTGC+AGG | 0.591239 | 1.3:-21737289 | None:intergenic |
| TTCCTGTCAACTAAACGCAA+AGG | 0.593613 | 1.3:-21735146 | None:intergenic |
| AGCATCCCAATGTAAAGCAT+AGG | 0.618659 | 1.3:-21735279 | None:intergenic |
| TCGCTAGCTGCAGCCCCGAG+TGG | 0.621053 | 1.3:-21736266 | None:intergenic |
| AGCATAAATTACCATCACTC+AGG | 0.628951 | 1.3:+21735432 | MS.gene91101:intron |
| AGCATGATATGAATTTGGAA+AGG | 0.636839 | 1.3:-21735676 | None:intergenic |
| GCAGAATAATAACTGGCATG+AGG | 0.639560 | 1.3:+21737054 | MS.gene91101:intron |
| CATAACAATCCCTAAAGCAG+AGG | 0.654524 | 1.3:-21736538 | None:intergenic |
| TGAATACATCAAAGAACACA+AGG | 0.678690 | 1.3:+21736865 | MS.gene91101:CDS |
| TAATGTGCCGGTTTACAAGG+CGG | 0.701604 | 1.3:+21735626 | MS.gene91101:CDS |
| TGAGTATGGAGTCAATGTTG+AGG | 0.703101 | 1.3:+21734877 | MS.gene91101:CDS |
| ACTAAACGCAAAGGAGACTG+TGG | 0.706143 | 1.3:-21735137 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTATTTAAAATTATA+GGG | + | chr1.3:21735246-21735265 | MS.gene91101:intron | 0.0% |
| !!! | TTAATTTTATTTAAAATTAT+AGG | + | chr1.3:21735245-21735264 | MS.gene91101:intron | 0.0% |
| !! | ATATTTGATCTTAATATTTC+AGG | + | chr1.3:21734469-21734488 | MS.gene91101:intron | 15.0% |
| !!! | AAATTCTAAAATCAAATGAA+AGG | - | chr1.3:21735107-21735126 | None:intergenic | 15.0% |
| !!! | AACTTTTTTTAATTCAGATT+AGG | - | chr1.3:21735200-21735219 | None:intergenic | 15.0% |
| !!! | TTTTAGTAAAACCTATATTT+TGG | - | chr1.3:21734333-21734352 | None:intergenic | 15.0% |
| !! | AATAGTCAAATAGAATAATG+AGG | - | chr1.3:21736624-21736643 | None:intergenic | 20.0% |
| !! | GATGTATTCATTTATGTTAT+AGG | - | chr1.3:21736855-21736874 | None:intergenic | 20.0% |
| !! | GATTACTTGTGTAAATATTA+CGG | - | chr1.3:21735878-21735897 | None:intergenic | 20.0% |
| !! | GTAATATTTACACAAGTAAT+CGG | + | chr1.3:21735877-21735896 | MS.gene91101:intron | 20.0% |
| !! | TGATGAAAAATTAACTAACT+TGG | + | chr1.3:21734694-21734713 | MS.gene91101:intron | 20.0% |
| !! | TTTATAAGACATCATTATCA+CGG | + | chr1.3:21736453-21736472 | MS.gene91101:CDS | 20.0% |
| !!! | ACATAAGTATTTAAAATAGC+AGG | - | chr1.3:21736107-21736126 | None:intergenic | 20.0% |
| !!! | TGGATATTGGTTATATTTTA+CGG | + | chr1.3:21735785-21735804 | MS.gene91101:intron | 20.0% |
| !!! | TTTGATTTTAGAATTTGAAG+CGG | + | chr1.3:21735111-21735130 | MS.gene91101:intron | 20.0% |
| ! | AAAGTGAAACTCCAAAATAT+AGG | + | chr1.3:21734319-21734338 | MS.gene91101:intron | 25.0% |
| ! | AACAAGCAATTTCAATTTGA+AGG | + | chr1.3:21734937-21734956 | MS.gene91101:CDS | 25.0% |
| ! | AGCTATTCAAATACATCATT+AGG | + | chr1.3:21736500-21736519 | MS.gene91101:CDS | 25.0% |
| ! | AGTCTATTAATCTTTACTTG+TGG | + | chr1.3:21735042-21735061 | MS.gene91101:intron | 25.0% |
| ! | ATAAAAAAACCCTAGAAACA+CGG | - | chr1.3:21734097-21734116 | None:intergenic | 25.0% |
| ! | ATAAAAAAACCCTAGAAACA+TGG | - | chr1.3:21734097-21734116 | None:intergenic | 25.0% |
| ! | CTTTCTATTATTCAAGCTTA+GGG | - | chr1.3:21735907-21735926 | None:intergenic | 25.0% |
| ! | TCAAATATAAGCATACAAAC+AGG | - | chr1.3:21734457-21734476 | None:intergenic | 25.0% |
| !! | ATGGATAAACTTGCTTATTA+TGG | + | chr1.3:21736678-21736697 | MS.gene91101:intron | 25.0% |
| !! | ATTATGTTTCTGATGGATAT+TGG | + | chr1.3:21735772-21735791 | MS.gene91101:intron | 25.0% |
| !! | ATTTTCTGCAGATAAACTAA+AGG | - | chr1.3:21734015-21734034 | None:intergenic | 25.0% |
| !! | ATTTTCTTCTTGTTGAGTTT+AGG | + | chr1.3:21736197-21736216 | MS.gene91101:intron | 25.0% |
| !! | CATGTTTTCTCAAGTTATAA+AGG | - | chr1.3:21737246-21737265 | None:intergenic | 25.0% |
| !! | GAATAATAGAAAGGTACATA+GGG | + | chr1.3:21735827-21735846 | MS.gene91101:intron | 25.0% |
| !! | TGAATAATAGAAAGGTACAT+AGG | + | chr1.3:21735826-21735845 | MS.gene91101:intron | 25.0% |
| !! | TTTGTAACCTCTATATTTTG+AGG | - | chr1.3:21736372-21736391 | None:intergenic | 25.0% |
| !!! | ACTATTTTAATGAAGTTCAG+AGG | - | chr1.3:21736934-21736953 | None:intergenic | 25.0% |
| !!! | TAACTTTTTCTAAGAGAAGA+AGG | + | chr1.3:21734626-21734645 | MS.gene91101:CDS | 25.0% |
| !!! | TAATTTGCTTGTGTTATTGA+TGG | + | chr1.3:21736659-21736678 | MS.gene91101:intron | 25.0% |
| !!! | TTGAGTTTAGGTTTTAATTG+TGG | + | chr1.3:21736209-21736228 | MS.gene91101:intron | 25.0% |
| !!! | TTGTTTTTTGTGCAAGAAAT+TGG | - | chr1.3:21735575-21735594 | None:intergenic | 25.0% |
| AATCCAGCATGATATGAATT+TGG | - | chr1.3:21735684-21735703 | None:intergenic | 30.0% | |
| ACTGAAAGCAGAATAATAAC+TGG | + | chr1.3:21737047-21737066 | MS.gene91101:intron | 30.0% | |
| AGCATGATATGAATTTGGAA+AGG | - | chr1.3:21735679-21735698 | None:intergenic | 30.0% | |
| AGGTCGATTGAATAATAGAA+AGG | + | chr1.3:21735818-21735837 | MS.gene91101:intron | 30.0% | |
| AGTAGCATTCTTACTATAGT+TGG | - | chr1.3:21734216-21734235 | None:intergenic | 30.0% | |
| AGTTCCTCATATGGAAATAT+AGG | - | chr1.3:21736317-21736336 | None:intergenic | 30.0% | |
| CCTAAGCTTGAATAATAGAA+AGG | + | chr1.3:21735905-21735924 | MS.gene91101:intron | 30.0% | |
| CCTTTCTATTATTCAAGCTT+AGG | - | chr1.3:21735908-21735927 | None:intergenic | 30.0% | |
| GAAATAATACATGGAGAGAA+AGG | + | chr1.3:21734848-21734867 | MS.gene91101:CDS | 30.0% | |
| GACAACATACTGTATTTAAG+AGG | + | chr1.3:21736741-21736760 | MS.gene91101:CDS | 30.0% | |
| GTAGCATTCTTACTATAGTT+GGG | - | chr1.3:21734215-21734234 | None:intergenic | 30.0% | |
| TACAAAAATTGCTTCCTTAC+TGG | - | chr1.3:21735176-21735195 | None:intergenic | 30.0% | |
| TACAACTCCTCAAAATATAG+AGG | + | chr1.3:21736362-21736381 | MS.gene91101:CDS | 30.0% | |
| TAGAAGATCACTATTTGTAC+AGG | + | chr1.3:21735325-21735344 | MS.gene91101:CDS | 30.0% | |
| TCAATTTGAAAAGACTGTCT+TGG | + | chr1.3:21735497-21735516 | MS.gene91101:CDS | 30.0% | |
| TGAATACATCAAAGAACACA+AGG | + | chr1.3:21736865-21736884 | MS.gene91101:CDS | 30.0% | |
| TGCCACAAAATTGTTTATGT+GGG | + | chr1.3:21736717-21736736 | MS.gene91101:CDS | 30.0% | |
| TGTCCTATATTAGATTGCAT+CGG | - | chr1.3:21734384-21734403 | None:intergenic | 30.0% | |
| TTACAAAGAAGTTCCTCATA+TGG | - | chr1.3:21736326-21736345 | None:intergenic | 30.0% | |
| TTATGTTCTAACAAGACATC+AGG | - | chr1.3:21735609-21735628 | None:intergenic | 30.0% | |
| TTTCCAAATTCATATCATGC+TGG | + | chr1.3:21735678-21735697 | MS.gene91101:CDS | 30.0% | |
| TTTCTATTATTCAATCGACC+TGG | - | chr1.3:21735819-21735838 | None:intergenic | 30.0% | |
| ! | AGGTTTTACTAAAATCACAG+TGG | + | chr1.3:21734339-21734358 | MS.gene91101:intron | 30.0% |
| ! | AGTTTTCAAATCGAATGAGA+TGG | + | chr1.3:21734597-21734616 | MS.gene91101:CDS | 30.0% |
| ! | CAAAAGTTTTCAACTGGAAA+AGG | + | chr1.3:21736793-21736812 | MS.gene91101:CDS | 30.0% |
| ! | CTTTTCCAGTTGAAAACTTT+TGG | - | chr1.3:21736795-21736814 | None:intergenic | 30.0% |
| ! | TGTTCTGATGGATAATAAGT+TGG | - | chr1.3:21733979-21733998 | None:intergenic | 30.0% |
| ! | TTCGATTTGAAAACTCTAAG+AGG | - | chr1.3:21734592-21734611 | None:intergenic | 30.0% |
| ! | TTCTTTACCGCAAAATCTTT+TGG | - | chr1.3:21734789-21734808 | None:intergenic | 30.0% |
| !! | GAATGCTACTTACTTTCTTT+TGG | + | chr1.3:21734226-21734245 | MS.gene91101:intron | 30.0% |
| !! | TAAACTTTGCTATTGGTGAT+TGG | + | chr1.3:21736240-21736259 | MS.gene91101:CDS | 30.0% |
| !! | TAGATATCGAAAAAGTGTTC+TGG | + | chr1.3:21734822-21734841 | MS.gene91101:CDS | 30.0% |
| !! | TGGTCTTATTATGTTTCTGA+TGG | + | chr1.3:21735765-21735784 | MS.gene91101:intron | 30.0% |
| AACAAAGTCTTCACAGAACA+TGG | + | chr1.3:21735534-21735553 | MS.gene91101:CDS | 35.0% | |
| AACTATTAGAACTTCAGGCA+TGG | - | chr1.3:21736021-21736040 | None:intergenic | 35.0% | |
| ACAACAGATTCTGCATTTGT+AGG | + | chr1.3:21734413-21734432 | MS.gene91101:intron | 35.0% | |
| ACTCAGGTGCAAATAAAACT+TGG | + | chr1.3:21735448-21735467 | MS.gene91101:CDS | 35.0% | |
| ACTGATCCTATGCTTTACAT+TGG | + | chr1.3:21735273-21735292 | MS.gene91101:CDS | 35.0% | |
| AGAATAATGAGGTCTTACCA+TGG | - | chr1.3:21736613-21736632 | None:intergenic | 35.0% | |
| AGACCGATGCAATCTAATAT+AGG | + | chr1.3:21734378-21734397 | MS.gene91101:intron | 35.0% | |
| AGCATAAATTACCATCACTC+AGG | + | chr1.3:21735432-21735451 | MS.gene91101:intron | 35.0% | |
| ATCATCAGGATCACTTGAAA+AGG | - | chr1.3:21734909-21734928 | None:intergenic | 35.0% | |
| CGAGATTTGATTATGGAGTT+CGG | - | chr1.3:21735968-21735987 | None:intergenic | 35.0% | |
| CTGATCCTATGCTTTACATT+GGG | + | chr1.3:21735274-21735293 | MS.gene91101:CDS | 35.0% | |
| CTTGTTAGAACATAATGTGC+CGG | + | chr1.3:21735614-21735633 | MS.gene91101:CDS | 35.0% | |
| GCAGTAACTATTAGAACTTC+AGG | - | chr1.3:21736026-21736045 | None:intergenic | 35.0% | |
| GCTACCTATATTTCCATATG+AGG | + | chr1.3:21736310-21736329 | MS.gene91101:CDS | 35.0% | |
| GGTGCAAATAAAACTTGGTA+TGG | + | chr1.3:21735453-21735472 | MS.gene91101:CDS | 35.0% | |
| GTATGCATTGCTTTATCTTC+AGG | + | chr1.3:21736978-21736997 | MS.gene91101:intron | 35.0% | |
| GTGCCACAAAATTGTTTATG+TGG | + | chr1.3:21736716-21736735 | MS.gene91101:CDS | 35.0% | |
| TATCATGCTGGATTTAGTCA+TGG | + | chr1.3:21735690-21735709 | MS.gene91101:CDS | 35.0% | |
| TGCTATTCAGTATGTTTGCA+TGG | + | chr1.3:21735298-21735317 | MS.gene91101:CDS | 35.0% | |
| TGTCTTAACGGAAGAGAAAA+AGG | + | chr1.3:21734540-21734559 | MS.gene91101:CDS | 35.0% | |
| TTACCATATTTAGAAGCCTC+AGG | - | chr1.3:21734042-21734061 | None:intergenic | 35.0% | |
| TTACCATGGAAAAGGCAAAT+TGG | - | chr1.3:21736599-21736618 | None:intergenic | 35.0% | |
| TTCTGGCACGAAATAATACA+TGG | + | chr1.3:21734839-21734858 | MS.gene91101:CDS | 35.0% | |
| TTGACAGGAAAATTCCAGTA+AGG | + | chr1.3:21735159-21735178 | MS.gene91101:intron | 35.0% | |
| ! | ATAAAGGACTCGTTGTCTTT+TGG | - | chr1.3:21737230-21737249 | None:intergenic | 35.0% |
| ! | ATTTGAAGCTCTTGCAAACA+AGG | + | chr1.3:21734757-21734776 | MS.gene91101:CDS | 35.0% |
| ! | CTCCCACATAAACAATTTTG+TGG | - | chr1.3:21736722-21736741 | None:intergenic | 35.0% |
| ! | GAAGCTGTAAACTTTGCTAT+TGG | + | chr1.3:21736233-21736252 | MS.gene91101:CDS | 35.0% |
| ! | GACAGTCTTTTCAAATTGAG+AGG | - | chr1.3:21735496-21735515 | None:intergenic | 35.0% |
| ! | GCGTTTTCCAAAAGATTTTG+CGG | + | chr1.3:21734779-21734798 | MS.gene91101:CDS | 35.0% |
| ! | TATTTTACGGATAAGTAGCC+AGG | + | chr1.3:21735798-21735817 | MS.gene91101:intron | 35.0% |
| ! | TCCTGCTTCTTTTGTCTTAA+CGG | + | chr1.3:21734528-21734547 | MS.gene91101:CDS | 35.0% |
| ! | TTTCCATCACCATGTTTCTA+GGG | + | chr1.3:21734085-21734104 | MS.gene91101:intron | 35.0% |
| ! | TTTTCCATCACCATGTTTCT+AGG | + | chr1.3:21734084-21734103 | MS.gene91101:intron | 35.0% |
| !! | ATTTTTCAGATGTCGCCAAA+AGG | - | chr1.3:21737306-21737325 | None:intergenic | 35.0% |
| !! | TTTTATTTGCACCTGAGTGA+TGG | - | chr1.3:21735446-21735465 | None:intergenic | 35.0% |
| !! | TTTTTCAGATGTCGCCAAAA+GGG | - | chr1.3:21737305-21737324 | None:intergenic | 35.0% |
| AAACCCTAGAAACATGGTGA+TGG | - | chr1.3:21734091-21734110 | None:intergenic | 40.0% | |
| AACATCATCACCGTGTTTCT+AGG | + | chr1.3:21734139-21734158 | MS.gene91101:intron | 40.0% | |
| AATTGAGAGGATGCAGAACT+AGG | - | chr1.3:21735483-21735502 | None:intergenic | 40.0% | |
| AGCATCCCAATGTAAAGCAT+AGG | - | chr1.3:21735282-21735301 | None:intergenic | 40.0% | |
| AGTGATCCTGATGATAAGCT+TGG | + | chr1.3:21734914-21734933 | MS.gene91101:CDS | 40.0% | |
| ATGAGGTCTTACCATGGAAA+AGG | - | chr1.3:21736607-21736626 | None:intergenic | 40.0% | |
| CAGGAACTGAAATTCTGCAT+GGG | - | chr1.3:21736088-21736107 | None:intergenic | 40.0% | |
| CATAACAATCCCTAAAGCAG+AGG | - | chr1.3:21736541-21736560 | None:intergenic | 40.0% | |
| CGCGTGCATGTTTAGATTAA+CGG | + | chr1.3:21734273-21734292 | MS.gene91101:intron | 40.0% | |
| CTTGTTCCAAGCTTATCATC+AGG | - | chr1.3:21734923-21734942 | None:intergenic | 40.0% | |
| GAACACGCGAGATTTGATTA+TGG | - | chr1.3:21735975-21735994 | None:intergenic | 40.0% | |
| GACAAAAGAAGCAGGATTAG+AGG | - | chr1.3:21734524-21734543 | None:intergenic | 40.0% | |
| GAGAAAGGAACAGTTGAGTA+TGG | + | chr1.3:21734863-21734882 | MS.gene91101:CDS | 40.0% | |
| GCAGAATAATAACTGGCATG+AGG | + | chr1.3:21737054-21737073 | MS.gene91101:intron | 40.0% | |
| TCCGTTAAGACAAAAGAAGC+AGG | - | chr1.3:21734532-21734551 | None:intergenic | 40.0% | |
| TGAGTATGGAGTCAATGTTG+AGG | + | chr1.3:21734877-21734896 | MS.gene91101:CDS | 40.0% | |
| TGCTCAAACTCTTGTTCTGA+TGG | - | chr1.3:21733991-21734010 | None:intergenic | 40.0% | |
| TTCCTGTCAACTAAACGCAA+AGG | - | chr1.3:21735149-21735168 | None:intergenic | 40.0% | |
| ! | ACATCATCACCGTGTTTCTA+GGG | + | chr1.3:21734140-21734159 | MS.gene91101:intron | 40.0% |
| ! | AGAAAGGTACATAGGGTTCA+AGG | + | chr1.3:21735834-21735853 | MS.gene91101:intron | 40.0% |
| ! | CTTTTGGTACTCATCACTGA+TGG | - | chr1.3:21737214-21737233 | None:intergenic | 40.0% |
| ! | GATCCAATTTGCCTTTTCCA+TGG | + | chr1.3:21736593-21736612 | MS.gene91101:CDS | 40.0% |
| ! | TGCTGCCAAAAGTTTTCAAC+TGG | + | chr1.3:21736787-21736806 | MS.gene91101:CDS | 40.0% |
| !! | ACATAATGTGCCGGTTTACA+AGG | + | chr1.3:21735623-21735642 | MS.gene91101:CDS | 40.0% |
| !! | ATTGGTGATTGGTTTCCACT+CGG | + | chr1.3:21736251-21736270 | MS.gene91101:CDS | 40.0% |
| AAGGTGATGACAAACTCTCC+TGG | - | chr1.3:21735660-21735679 | None:intergenic | 45.0% | |
| ACTAAACGCAAAGGAGACTG+TGG | - | chr1.3:21735140-21735159 | None:intergenic | 45.0% | |
| AGAAGAACTGTTAGCTCGCT+AGG | + | chr1.3:21737088-21737107 | MS.gene91101:CDS | 45.0% | |
| CAAGACATCAGGAGAGAACA+TGG | - | chr1.3:21735598-21735617 | None:intergenic | 45.0% | |
| CTCCTTTGCGTTTAGTTGAC+AGG | + | chr1.3:21735144-21735163 | MS.gene91101:CDS | 45.0% | |
| CTCTCTCTCTCTACATGTCT+TGG | + | chr1.3:21735745-21735764 | MS.gene91101:intron | 45.0% | |
| GAACTTGAGTACTTCAGCGA+TGG | - | chr1.3:21734254-21734273 | None:intergenic | 45.0% | |
| GCAGGAACTGAAATTCTGCA+TGG | - | chr1.3:21736089-21736108 | None:intergenic | 45.0% | |
| GCTCCTGAGGCTTCTAAATA+TGG | + | chr1.3:21734036-21734055 | MS.gene91101:CDS | 45.0% | |
| GCTCGATAAGATGTGTCTTC+AGG | - | chr1.3:21736401-21736420 | None:intergenic | 45.0% | |
| TCTGCAGAAAATTGCTCCTG+AGG | + | chr1.3:21734023-21734042 | MS.gene91101:CDS | 45.0% | |
| ! | TCCTGCAGTATCTTCCCTTT+TGG | + | chr1.3:21737288-21737307 | MS.gene91101:CDS | 45.0% |
| ! | TTTTGCACCGCCTTGTAAAC+CGG | - | chr1.3:21735636-21735655 | None:intergenic | 45.0% |
| !! | TAATGTGCCGGTTTACAAGG+CGG | + | chr1.3:21735626-21735645 | MS.gene91101:CDS | 45.0% |
| !! | TTGGTGATTGGTTTCCACTC+GGG | + | chr1.3:21736252-21736271 | MS.gene91101:CDS | 45.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr1.3:21735717-21735736 | None:intergenic | 50.0% | |
| GACATGCAGCCTCTGCTTTA+GGG | + | chr1.3:21736529-21736548 | MS.gene91101:CDS | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr1.3:21735718-21735737 | None:intergenic | 50.0% | |
| GCCAAAAGGGAAGATACTGC+AGG | - | chr1.3:21737292-21737311 | None:intergenic | 50.0% | |
| TGACATGCAGCCTCTGCTTT+AGG | + | chr1.3:21736528-21736547 | MS.gene91101:CDS | 50.0% | |
| TGCAGCGGCATAGGATCAAT+AGG | + | chr1.3:21735942-21735961 | MS.gene91101:intron | 50.0% | |
| !! | TGGTGATTGGTTTCCACTCG+GGG | + | chr1.3:21736253-21736272 | MS.gene91101:CDS | 50.0% |
| GATCCTATGCCGCTGCATAG+TGG | - | chr1.3:21735939-21735958 | None:intergenic | 55.0% | |
| GCAGGATTAGAGGCAGCGAT+TGG | - | chr1.3:21734514-21734533 | None:intergenic | 55.0% | |
| GTACTTCCGCCACTATGCAG+CGG | + | chr1.3:21735927-21735946 | MS.gene91101:intron | 55.0% | |
| TACAAGGCGGTGCAAAAGCC+AGG | + | chr1.3:21735639-21735658 | MS.gene91101:CDS | 55.0% | |
| CCTATGCCGCTGCATAGTGG+CGG | - | chr1.3:21735936-21735955 | None:intergenic | 60.0% | |
| CCGCCACTATGCAGCGGCAT+AGG | + | chr1.3:21735933-21735952 | MS.gene91101:intron | 65.0% | |
| TCGCTAGCTGCAGCCCCGAG+TGG | - | chr1.3:21736269-21736288 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 21733952 | 21737327 | 21733952 | ID=MS.gene91101 |
| chr1.3 | mRNA | 21733952 | 21737327 | 21733952 | ID=MS.gene91101.t1;Parent=MS.gene91101 |
| chr1.3 | exon | 21733952 | 21734057 | 21733952 | ID=MS.gene91101.t1.exon1;Parent=MS.gene91101.t1 |
| chr1.3 | CDS | 21733952 | 21734057 | 21733952 | ID=cds.MS.gene91101.t1;Parent=MS.gene91101.t1 |
| chr1.3 | exon | 21734491 | 21734647 | 21734491 | ID=MS.gene91101.t1.exon2;Parent=MS.gene91101.t1 |
| chr1.3 | CDS | 21734491 | 21734647 | 21734491 | ID=cds.MS.gene91101.t1;Parent=MS.gene91101.t1 |
| chr1.3 | exon | 21734739 | 21734958 | 21734739 | ID=MS.gene91101.t1.exon3;Parent=MS.gene91101.t1 |
| chr1.3 | CDS | 21734739 | 21734958 | 21734739 | ID=cds.MS.gene91101.t1;Parent=MS.gene91101.t1 |
| chr1.3 | exon | 21735122 | 21735175 | 21735122 | ID=MS.gene91101.t1.exon4;Parent=MS.gene91101.t1 |
| chr1.3 | CDS | 21735122 | 21735175 | 21735122 | ID=cds.MS.gene91101.t1;Parent=MS.gene91101.t1 |
| chr1.3 | exon | 21735267 | 21735346 | 21735267 | ID=MS.gene91101.t1.exon5;Parent=MS.gene91101.t1 |
| chr1.3 | CDS | 21735267 | 21735346 | 21735267 | ID=cds.MS.gene91101.t1;Parent=MS.gene91101.t1 |
| chr1.3 | exon | 21735434 | 21735711 | 21735434 | ID=MS.gene91101.t1.exon6;Parent=MS.gene91101.t1 |
| chr1.3 | CDS | 21735434 | 21735711 | 21735434 | ID=cds.MS.gene91101.t1;Parent=MS.gene91101.t1 |
| chr1.3 | exon | 21736219 | 21736614 | 21736219 | ID=MS.gene91101.t1.exon7;Parent=MS.gene91101.t1 |
| chr1.3 | CDS | 21736219 | 21736614 | 21736219 | ID=cds.MS.gene91101.t1;Parent=MS.gene91101.t1 |
| chr1.3 | exon | 21736711 | 21736886 | 21736711 | ID=MS.gene91101.t1.exon8;Parent=MS.gene91101.t1 |
| chr1.3 | CDS | 21736711 | 21736886 | 21736711 | ID=cds.MS.gene91101.t1;Parent=MS.gene91101.t1 |
| chr1.3 | exon | 21737058 | 21737327 | 21737058 | ID=MS.gene91101.t1.exon9;Parent=MS.gene91101.t1 |
| chr1.3 | CDS | 21737058 | 21737327 | 21737058 | ID=cds.MS.gene91101.t1;Parent=MS.gene91101.t1 |
| Gene Sequence |
| Protein sequence |
