Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91173.t1 | XP_003621009.1 | 98.4 | 437 | 7 | 0 | 1 | 437 | 1 | 437 | 3.80E-226 | 793.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91173.t1 | Q9MAT6 | 53.1 | 377 | 146 | 5 | 1 | 358 | 1 | 365 | 5.8e-90 | 332.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91173.t1 | G7KWP7 | 98.4 | 437 | 7 | 0 | 1 | 437 | 1 | 437 | 2.7e-226 | 793.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene91173.t1 | TR | ARID |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91173.t1 | MTR_7g005970 | 98.398 | 437 | 7 | 0 | 1 | 437 | 1 | 437 | 0.0 | 902 |
MS.gene91173.t1 | MTR_1g116180 | 61.340 | 388 | 133 | 6 | 1 | 377 | 1 | 382 | 5.83e-167 | 476 |
MS.gene91173.t1 | MTR_1g116180 | 64.127 | 315 | 97 | 7 | 1 | 303 | 1 | 311 | 2.76e-141 | 407 |
MS.gene91173.t1 | MTR_3g114920 | 45.714 | 315 | 144 | 9 | 25 | 328 | 20 | 318 | 1.10e-82 | 257 |
MS.gene91173.t1 | MTR_3g009890 | 38.079 | 302 | 124 | 6 | 22 | 323 | 26 | 264 | 2.24e-54 | 182 |
MS.gene91173.t1 | MTR_5g080030 | 23.711 | 291 | 159 | 7 | 67 | 353 | 70 | 301 | 5.27e-13 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91173.t1 | AT1G04880 | 54.813 | 374 | 140 | 6 | 1 | 356 | 1 | 363 | 1.42e-120 | 358 |
MS.gene91173.t1 | AT1G76110 | 42.812 | 313 | 156 | 3 | 25 | 327 | 27 | 326 | 1.25e-81 | 255 |
MS.gene91173.t1 | AT3G13350 | 45.833 | 312 | 137 | 8 | 30 | 336 | 34 | 318 | 2.39e-79 | 248 |
MS.gene91173.t1 | AT1G55650 | 39.867 | 301 | 140 | 6 | 32 | 331 | 30 | 290 | 2.89e-64 | 210 |
Find 92 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTCTACAGTGTCTTCTTC+TGG | 0.218418 | 7.2:-92895068 | MS.gene91173:intron |
GGAGAAGCTTCATGCTTCTA+TGG | 0.249345 | 7.2:-92897444 | MS.gene91173:CDS |
GGAAGAAGTCAGAAATAAAA+AGG | 0.265856 | 7.2:-92894872 | MS.gene91173:CDS |
TGTTTCAGGGTTCCCATTAT+TGG | 0.277531 | 7.2:-92897229 | MS.gene91173:intron |
CGGTGGACCCCTGCATCTTC+TGG | 0.281007 | 7.2:-92896033 | MS.gene91173:intron |
TCTTCTGGATCTTCACTTGT+TGG | 0.289352 | 7.2:-92895053 | MS.gene91173:CDS |
GCCACTTCAACAACGGTTTC+CGG | 0.298298 | 7.2:-92893974 | MS.gene91173:CDS |
ATAGGAGCTACCACTTTCAT+AGG | 0.334690 | 7.2:+92897542 | None:intergenic |
TCACTTGTTGGAGTTATTGA+TGG | 0.342127 | 7.2:-92895041 | MS.gene91173:CDS |
TAACCACTTCTGTTAGGTTT+CGG | 0.349489 | 7.2:+92894834 | None:intergenic |
TAATATCCTTGTCCATGGTT+TGG | 0.351606 | 7.2:+92894766 | None:intergenic |
AAGTTGACTGGATGTGTTCC+TGG | 0.359358 | 7.2:+92895854 | None:intergenic |
TCCTCCTCCGACGGCGGCGT+TGG | 0.371177 | 7.2:+92894892 | None:intergenic |
CAATATTGCATCTGCTGCAT+TGG | 0.389249 | 7.2:-92894919 | MS.gene91173:CDS |
CCAGTCAACTTTCAGAAGTC+AGG | 0.391759 | 7.2:-92895842 | MS.gene91173:CDS |
GAAGCATTTGTTGCTGTTGA+TGG | 0.394767 | 7.2:+92896126 | None:intergenic |
ACTCCCGAGGAGAGTAGTTC+TGG | 0.398649 | 7.2:-92893898 | MS.gene91173:CDS |
AGATGCAGGGGTCCACCGTT+TGG | 0.409841 | 7.2:+92896038 | None:intergenic |
AAAATTGTCTACACTAAAGT+AGG | 0.410247 | 7.2:+92893677 | None:intergenic |
AAATTGTAACCACTTCTGTT+AGG | 0.413038 | 7.2:+92894828 | None:intergenic |
GTAGAATGATTGGCGAACTT+TGG | 0.413562 | 7.2:-92894743 | MS.gene91173:CDS |
TTATCAAGAAAAGGCTGTTA+AGG | 0.420019 | 7.2:-92894073 | MS.gene91173:CDS |
AAAGTAGGGATAACATGTTT+TGG | 0.420130 | 7.2:+92893692 | None:intergenic |
AGAAAGGTACCAAGCAGAAA+TGG | 0.423266 | 7.2:-92894046 | MS.gene91173:CDS |
ATCAACATAGATGCTTCTTC+CGG | 0.439105 | 7.2:-92893850 | MS.gene91173:CDS |
CTGTTAGGTTTCGGATGTGC+AGG | 0.443824 | 7.2:+92894843 | None:intergenic |
CAAGCTCTTTATGCTTACAT+TGG | 0.448632 | 7.2:-92897465 | MS.gene91173:CDS |
CATTAAGGTTTATCAAGAAA+AGG | 0.456846 | 7.2:-92894082 | MS.gene91173:intron |
CAATGTAAGCATAAAGAGCT+TGG | 0.458599 | 7.2:+92897466 | None:intergenic |
ATTGATGGAAAGTTTGAAAG+TGG | 0.459678 | 7.2:-92895026 | MS.gene91173:CDS |
AAGGATATTAGTAGAATGAT+TGG | 0.462358 | 7.2:-92894753 | MS.gene91173:CDS |
TCCGGAAGGAGATTCAGCTT+TGG | 0.463701 | 7.2:-92893956 | MS.gene91173:CDS |
GGAAGGAGATTCAGCTTTGG+TGG | 0.464831 | 7.2:-92893953 | MS.gene91173:CDS |
AGAATCCACTCTTGCTCCAC+CGG | 0.466317 | 7.2:+92893831 | None:intergenic |
AATATTGCATCTGCTGCATT+GGG | 0.466960 | 7.2:-92894918 | MS.gene91173:CDS |
TGATTCAGACAAGGCAACTA+AGG | 0.470199 | 7.2:-92893797 | MS.gene91173:CDS |
TCCAACGCCGCCGTCGGAGG+AGG | 0.470219 | 7.2:-92894893 | MS.gene91173:CDS |
AGCTTATGAAAGAGAGAAGA+TGG | 0.479121 | 7.2:-92896176 | MS.gene91173:CDS |
ACTGGATGTGTTCCTGGAGA+AGG | 0.481946 | 7.2:+92895860 | None:intergenic |
ACCAAAGCTGAATCTCCTTC+CGG | 0.486239 | 7.2:+92893955 | None:intergenic |
TATCTAGTTTCAGTTTCAGT+AGG | 0.493509 | 7.2:-92895002 | MS.gene91173:CDS |
AATGTAAGCATAAAGAGCTT+GGG | 0.499008 | 7.2:+92897467 | None:intergenic |
TCCGGAAACCGTTGTTGAAG+TGG | 0.505882 | 7.2:+92893973 | None:intergenic |
TTCAGGGTTCCCATTATTGG+AGG | 0.517053 | 7.2:-92897226 | MS.gene91173:intron |
GCGTGGGGCCACTTCAACAA+CGG | 0.517611 | 7.2:-92893981 | MS.gene91173:CDS |
GAGAAGCTTCATGCTTCTAT+GGG | 0.518689 | 7.2:-92897443 | MS.gene91173:CDS |
CAGTCAACTTTCAGAAGTCA+GGG | 0.523459 | 7.2:-92895841 | MS.gene91173:CDS |
TGGGCGTCCAACGCCGCCGT+CGG | 0.523765 | 7.2:-92894899 | MS.gene91173:CDS |
TTCATTGAAGTGACTTCTCG+TGG | 0.526953 | 7.2:-92897178 | MS.gene91173:CDS |
ATGCACAAACCAGAAGATGC+AGG | 0.528390 | 7.2:+92896024 | None:intergenic |
CCTGACTTCTGAAAGTTGAC+TGG | 0.531166 | 7.2:+92895842 | None:intergenic |
CAATGATTTCCCTATGAAAG+TGG | 0.531885 | 7.2:-92897552 | MS.gene91173:CDS |
TTGAAGTGGCCCCACGCTGT+CGG | 0.532331 | 7.2:+92893987 | None:intergenic |
TTCACCAGAACTACTCTCCT+CGG | 0.534121 | 7.2:+92893894 | None:intergenic |
GATAATCCTCCATTTCTGCT+TGG | 0.539679 | 7.2:+92894037 | None:intergenic |
TCTACTAATATCCTTGTCCA+TGG | 0.543804 | 7.2:+92894761 | None:intergenic |
TGCACAAACCAGAAGATGCA+GGG | 0.551653 | 7.2:+92896025 | None:intergenic |
TCACCAGAACTACTCTCCTC+GGG | 0.553627 | 7.2:+92893895 | None:intergenic |
GCGTCCAACGCCGCCGTCGG+AGG | 0.562184 | 7.2:-92894896 | MS.gene91173:CDS |
TTGAAGTGACTTCTCGTGGA+GGG | 0.562395 | 7.2:-92897174 | MS.gene91173:CDS |
AACATAGATGCTTCTTCCGG+TGG | 0.562713 | 7.2:-92893847 | MS.gene91173:CDS |
GAAGTTCTTAGCCATTGTGA+GGG | 0.564422 | 7.2:-92893763 | MS.gene91173:CDS |
TCAGGATATGAATGAGACAT+AGG | 0.570116 | 7.2:+92897524 | None:intergenic |
TTCTTCCGGTGGAGCAAGAG+TGG | 0.579438 | 7.2:-92893836 | MS.gene91173:CDS |
TGAAGTTCTTAGCCATTGTG+AGG | 0.580768 | 7.2:-92893764 | MS.gene91173:CDS |
CTGACTTCTTCCTCCTCCGA+CGG | 0.584477 | 7.2:+92894883 | None:intergenic |
TATTGAAGCTGGAACAGACA+TGG | 0.585157 | 7.2:+92895898 | None:intergenic |
TGTGAGGGAGAAGTGAATGC+TGG | 0.586039 | 7.2:-92893748 | MS.gene91173:CDS |
AGGCTGTTAAGGATAAAGAA+AGG | 0.597432 | 7.2:-92894062 | MS.gene91173:CDS |
AAATTGTCTACACTAAAGTA+GGG | 0.600990 | 7.2:+92893678 | None:intergenic |
TCAGACAAGGCAACTAAGGA+GGG | 0.601091 | 7.2:-92893793 | MS.gene91173:CDS |
TGCAAAATATGATGATGTTG+TGG | 0.605066 | 7.2:-92897495 | MS.gene91173:CDS |
ACTTCTTCCTCCTCCGACGG+CGG | 0.605098 | 7.2:+92894886 | None:intergenic |
CATCCGAAACCTAACAGAAG+TGG | 0.610656 | 7.2:-92894837 | MS.gene91173:CDS |
TTCAGACAAGGCAACTAAGG+AGG | 0.611052 | 7.2:-92893794 | MS.gene91173:CDS |
AAAGCTACTAAACCAAACCA+TGG | 0.615278 | 7.2:-92894778 | MS.gene91173:CDS |
AATGCTTCTGAATTGCCTCA+AGG | 0.618648 | 7.2:-92895815 | MS.gene91173:intron |
CTTCAACAACGGTTTCCGGA+AGG | 0.622063 | 7.2:-92893970 | MS.gene91173:CDS |
TAGGAGCTACCACTTTCATA+GGG | 0.623246 | 7.2:+92897543 | None:intergenic |
AGCATTGTAACCGACAGCGT+GGG | 0.623890 | 7.2:-92893997 | MS.gene91173:CDS |
AAGGTACCAAGCAGAAATGG+AGG | 0.630994 | 7.2:-92894043 | MS.gene91173:CDS |
AAGCATTGTAACCGACAGCG+TGG | 0.631644 | 7.2:-92893998 | MS.gene91173:CDS |
GCATTGTAACCGACAGCGTG+GGG | 0.651123 | 7.2:-92893996 | MS.gene91173:CDS |
CATTCACTTCTCCCTCACAA+TGG | 0.653715 | 7.2:+92893752 | None:intergenic |
TTCTCGTGGAGGGATTGAGA+AGG | 0.661472 | 7.2:-92897164 | MS.gene91173:intron |
GCACAAACCAGAAGATGCAG+GGG | 0.670000 | 7.2:+92896026 | None:intergenic |
ACTAAACCAAACCATGGACA+AGG | 0.670033 | 7.2:-92894772 | MS.gene91173:CDS |
GTAGGTTCAGAGACACTCAA+AGG | 0.670192 | 7.2:-92894984 | MS.gene91173:CDS |
ATTGAAGTGACTTCTCGTGG+AGG | 0.683803 | 7.2:-92897175 | MS.gene91173:CDS |
AGTCAACTTTCAGAAGTCAG+GGG | 0.692181 | 7.2:-92895840 | MS.gene91173:CDS |
GAGGGAGAAGTGAATGCTGG+AGG | 0.708907 | 7.2:-92893745 | MS.gene91173:CDS |
TGATTCGTGTCAGACTCCCG+AGG | 0.724551 | 7.2:-92893911 | MS.gene91173:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATTAAAAACATCAAAT+AGG | + | chr7.2:92894547-92894566 | None:intergenic | 10.0% |
!!! | CAATTTTCTTAAATTATTAT+TGG | - | chr7.2:92897050-92897069 | MS.gene91173:intron | 10.0% |
!! | GAAAAGAAGAAAAAATAATT+TGG | - | chr7.2:92895520-92895539 | MS.gene91173:intron | 15.0% |
!!! | AAAATGAACATGTTTTTATT+AGG | + | chr7.2:92894499-92894518 | None:intergenic | 15.0% |
!!! | ATTTTTTCTTCTTTTCTTTT+TGG | + | chr7.2:92895516-92895535 | None:intergenic | 15.0% |
!!! | GATGTTTTTAATATTTAATC+AGG | - | chr7.2:92894551-92894570 | MS.gene91173:intron | 15.0% |
!!! | TAATATTTAAGTACCTTTTT+CGG | - | chr7.2:92894867-92894886 | MS.gene91173:CDS | 15.0% |
!!! | TTACGTACATATATAATTTT+TGG | - | chr7.2:92895031-92895050 | MS.gene91173:CDS | 15.0% |
!!! | TTATTAATTTTAATGCTTTG+TGG | + | chr7.2:92896329-92896348 | None:intergenic | 15.0% |
!!! | TTTGTAATTTTCAATACATT+TGG | - | chr7.2:92895960-92895979 | MS.gene91173:intron | 15.0% |
!! | AAATGAGATTGAAAAACTAA+AGG | + | chr7.2:92896101-92896120 | None:intergenic | 20.0% |
!! | ACAAAGTTATTTAATCAATC+TGG | - | chr7.2:92896038-92896057 | MS.gene91173:CDS | 20.0% |
!! | GATTGATTAAATAACTTTGT+TGG | + | chr7.2:92896038-92896057 | None:intergenic | 20.0% |
!! | TCAATCTGGTTAAATATATT+TGG | - | chr7.2:92896052-92896071 | MS.gene91173:CDS | 20.0% |
!! | TCATCTATGAAAAAAAGTTT+AGG | + | chr7.2:92894958-92894977 | None:intergenic | 20.0% |
!!! | AACATGTTCATTTTATTTCA+AGG | - | chr7.2:92894505-92894524 | MS.gene91173:intron | 20.0% |
!!! | ATAACTGAAATTTTGTTTCA+GGG | - | chr7.2:92894029-92894048 | MS.gene91173:CDS | 20.0% |
!!! | ATACAAGTTTGATTTTGAAT+CGG | - | chr7.2:92896898-92896917 | MS.gene91173:intron | 20.0% |
!!! | TAACAATTCAAATTGGTTTT+TGG | - | chr7.2:92896796-92896815 | MS.gene91173:intron | 20.0% |
!!! | TATAACTGAAATTTTGTTTC+AGG | - | chr7.2:92894028-92894047 | MS.gene91173:CDS | 20.0% |
!!! | TTGGTTATTTTTTAACGATT+TGG | - | chr7.2:92896815-92896834 | MS.gene91173:intron | 20.0% |
!!! | TTGTAGTTTTGTTAAATTCA+TGG | + | chr7.2:92895797-92895816 | None:intergenic | 20.0% |
!!! | TTTGAACATGAATTTTTTGT+TGG | - | chr7.2:92895287-92895306 | MS.gene91173:intron | 20.0% |
!!! | TTTTAATGTTCAATATGACT+AGG | + | chr7.2:92895654-92895673 | None:intergenic | 20.0% |
! | AAGGATATTAGTAGAATGAT+TGG | - | chr7.2:92896518-92896537 | MS.gene91173:intron | 25.0% |
! | AATCACAAGCATTAAAATAG+TGG | + | chr7.2:92894452-92894471 | None:intergenic | 25.0% |
! | AGATCTATGTACAAATCTAT+AGG | + | chr7.2:92895004-92895023 | None:intergenic | 25.0% |
! | AGCATATTAATAACATGACT+AGG | + | chr7.2:92897157-92897176 | None:intergenic | 25.0% |
! | CACAAATTGCTATAAAGATA+AGG | + | chr7.2:92895071-92895090 | None:intergenic | 25.0% |
! | CATTAAGGTTTATCAAGAAA+AGG | - | chr7.2:92897189-92897208 | MS.gene91173:CDS | 25.0% |
! | GATAAATATGTTCATGAAAG+AGG | - | chr7.2:92894272-92894291 | MS.gene91173:intron | 25.0% |
! | GATCTATGTACAAATCTATA+GGG | + | chr7.2:92895003-92895022 | None:intergenic | 25.0% |
! | GGAAAATTTCTTATACTAGT+TGG | + | chr7.2:92894478-92894497 | None:intergenic | 25.0% |
! | TAGTTAACAATAACAAGTAG+TGG | - | chr7.2:92896176-92896195 | MS.gene91173:CDS | 25.0% |
! | TGATTTATATATGCATGACT+TGG | + | chr7.2:92896151-92896170 | None:intergenic | 25.0% |
! | TTCGGTTTAACAATTCAAAT+TGG | - | chr7.2:92896789-92896808 | MS.gene91173:intron | 25.0% |
!! | TAATGTTCGGTTTGATTTAA+CGG | + | chr7.2:92896703-92896722 | None:intergenic | 25.0% |
!! | TATTTTACAAAATTCGCTGT+TGG | - | chr7.2:92894728-92894747 | MS.gene91173:CDS | 25.0% |
!!! | AGCAGCAAAAGATATTTTTT+AGG | + | chr7.2:92895862-92895881 | None:intergenic | 25.0% |
!!! | ATAGCTTTATTTATTTCCAC+AGG | + | chr7.2:92896124-92896143 | None:intergenic | 25.0% |
!!! | TACAAGTTTGATTTTGAATC+GGG | - | chr7.2:92896899-92896918 | MS.gene91173:intron | 25.0% |
!!! | TCTACTATTTTAGATCCAAA+CGG | - | chr7.2:92895218-92895237 | MS.gene91173:intron | 25.0% |
!!! | TTCATTTTATTTCAAGGACA+TGG | - | chr7.2:92894511-92894530 | MS.gene91173:intron | 25.0% |
AAAAATTGCGTTATTGAAGC+TGG | + | chr7.2:92895387-92895406 | None:intergenic | 30.0% | |
AAATTGTAACCACTTCTGTT+AGG | + | chr7.2:92896446-92896465 | None:intergenic | 30.0% | |
AATATGACTAGGTGTATGTT+TGG | + | chr7.2:92895643-92895662 | None:intergenic | 30.0% | |
AATGTAAGCATAAAGAGCTT+GGG | + | chr7.2:92893807-92893826 | None:intergenic | 30.0% | |
ACACTAACATATTGTTGTCA+TGG | - | chr7.2:92893986-92894005 | MS.gene91173:CDS | 30.0% | |
ACATATTGTTGTCATGGATT+TGG | - | chr7.2:92893992-92894011 | MS.gene91173:CDS | 30.0% | |
ACTAAATACACTCAACTCAT+TGG | - | chr7.2:92894369-92894388 | MS.gene91173:intron | 30.0% | |
AGTAGTTTCCTAAATCAAAG+CGG | + | chr7.2:92895916-92895935 | None:intergenic | 30.0% | |
ATGAACTGTCAGTTAATGTT+CGG | + | chr7.2:92896716-92896735 | None:intergenic | 30.0% | |
ATTGATGGAAAGTTTGAAAG+TGG | - | chr7.2:92896245-92896264 | MS.gene91173:intron | 30.0% | |
CACTATGATTATTCAAGGTT+CGG | + | chr7.2:92896989-92897008 | None:intergenic | 30.0% | |
CATATTTATCTGCTCAAACT+TGG | + | chr7.2:92894262-92894281 | None:intergenic | 30.0% | |
GGAAGAAGTCAGAAATAAAA+AGG | - | chr7.2:92896399-92896418 | MS.gene91173:intron | 30.0% | |
GTAACTGTCTACTTAATCTT+TGG | + | chr7.2:92895737-92895756 | None:intergenic | 30.0% | |
GTATAGCCAAATTGTTGTAA+CGG | - | chr7.2:92896951-92896970 | MS.gene91173:intron | 30.0% | |
TAAAAGTAGACATAGAAGTG+CGG | - | chr7.2:92895669-92895688 | MS.gene91173:intron | 30.0% | |
TATATGAGCTTAAGAACCTT+AGG | - | chr7.2:92895555-92895574 | MS.gene91173:intron | 30.0% | |
TCACGACTCAATTCAATTTA+TGG | + | chr7.2:92894587-92894606 | None:intergenic | 30.0% | |
TCAGACACTATGATTATTCA+AGG | + | chr7.2:92896994-92897013 | None:intergenic | 30.0% | |
TCGTGAACAAAACTTTGTAT+GGG | - | chr7.2:92894601-92894620 | MS.gene91173:intron | 30.0% | |
TGACACAATACAAATACAAG+TGG | - | chr7.2:92897011-92897030 | MS.gene91173:intron | 30.0% | |
TTATATCAGTCAACGAAGAA+TGG | - | chr7.2:92894760-92894779 | MS.gene91173:CDS | 30.0% | |
TTATCAAGAAAAGGCTGTTA+AGG | - | chr7.2:92897198-92897217 | MS.gene91173:CDS | 30.0% | |
! | AAAGTAGGGATAACATGTTT+TGG | + | chr7.2:92897582-92897601 | None:intergenic | 30.0% |
! | ACATCATCATATTTTGCAAG+AGG | + | chr7.2:92893774-92893793 | None:intergenic | 30.0% |
! | AGTTCTTTTCCTCCAATAAT+GGG | + | chr7.2:92894057-92894076 | None:intergenic | 30.0% |
! | ATAGTATTTTCTGAGCACAA+AGG | + | chr7.2:92895170-92895189 | None:intergenic | 30.0% |
! | GTACATTTTGTTAGTCACTT+TGG | - | chr7.2:92895835-92895854 | MS.gene91173:CDS | 30.0% |
! | TAAACCAAACTGGTTTAGTT+CGG | + | chr7.2:92896742-92896761 | None:intergenic | 30.0% |
! | TAGTTCTTTTCCTCCAATAA+TGG | + | chr7.2:92894058-92894077 | None:intergenic | 30.0% |
! | TATCTAGTTTCAGTTTCAGT+AGG | - | chr7.2:92896269-92896288 | MS.gene91173:intron | 30.0% |
! | TGCAAAATATGATGATGTTG+TGG | - | chr7.2:92893776-92893795 | MS.gene91173:CDS | 30.0% |
! | TTTGATTTAACGGTTTGCTT+TGG | + | chr7.2:92896693-92896712 | None:intergenic | 30.0% |
!! | TAACGATTTGGTTAGTTATC+TGG | - | chr7.2:92896827-92896846 | MS.gene91173:intron | 30.0% |
!! | TTTTTCAATCTCATTTCCTG+TGG | - | chr7.2:92896105-92896124 | MS.gene91173:CDS | 30.0% |
!!! | TATTTAAGTACCTTTTTCGG+CGG | - | chr7.2:92894870-92894889 | MS.gene91173:CDS | 30.0% |
AAAGCTACTAAACCAAACCA+TGG | - | chr7.2:92896493-92896512 | MS.gene91173:intron | 35.0% | |
AAATTGAACCAAACCGTCAA+TGG | + | chr7.2:92896930-92896949 | None:intergenic | 35.0% | |
AATATTGCATCTGCTGCATT+GGG | - | chr7.2:92896353-92896372 | MS.gene91173:intron | 35.0% | |
ACAATATGTTAGTGTCGTGT+CGG | + | chr7.2:92893981-92894000 | None:intergenic | 35.0% | |
ACTGTCTACTTAATCTTTGG+TGG | + | chr7.2:92895734-92895753 | None:intergenic | 35.0% | |
AGCTTATGAAAGAGAGAAGA+TGG | - | chr7.2:92895095-92895114 | MS.gene91173:intron | 35.0% | |
AGGCTGTTAAGGATAAAGAA+AGG | - | chr7.2:92897209-92897228 | MS.gene91173:CDS | 35.0% | |
ATCAACATAGATGCTTCTTC+CGG | - | chr7.2:92897421-92897440 | MS.gene91173:intron | 35.0% | |
CAAGCTCTTTATGCTTACAT+TGG | - | chr7.2:92893806-92893825 | MS.gene91173:CDS | 35.0% | |
CAATGATTTCCCTATGAAAG+TGG | - | chr7.2:92893719-92893738 | MS.gene91173:CDS | 35.0% | |
CAATGTAAGCATAAAGAGCT+TGG | + | chr7.2:92893808-92893827 | None:intergenic | 35.0% | |
CAGTACTAATTATCAACAGC+CGG | - | chr7.2:92896861-92896880 | MS.gene91173:intron | 35.0% | |
CTGTCTATCATAGTTTGGTT+CGG | - | chr7.2:92896771-92896790 | MS.gene91173:intron | 35.0% | |
CTTCAATTGTAAGCCATGTA+TGG | - | chr7.2:92893922-92893941 | MS.gene91173:CDS | 35.0% | |
GATTGTTTGTAGAACCTATG+AGG | + | chr7.2:92897118-92897137 | None:intergenic | 35.0% | |
GTCGTGAACAAAACTTTGTA+TGG | - | chr7.2:92894600-92894619 | MS.gene91173:intron | 35.0% | |
GTGAACTGTCTATCATAGTT+TGG | - | chr7.2:92896766-92896785 | MS.gene91173:intron | 35.0% | |
GTTCACAAACTAAACCAAAC+TGG | + | chr7.2:92896752-92896771 | None:intergenic | 35.0% | |
TAACCACTTCTGTTAGGTTT+CGG | + | chr7.2:92896440-92896459 | None:intergenic | 35.0% | |
TAATATCCTTGTCCATGGTT+TGG | + | chr7.2:92896508-92896527 | None:intergenic | 35.0% | |
TCAAACTTGGACACAATCTA+TGG | + | chr7.2:92894249-92894268 | None:intergenic | 35.0% | |
TCAGGATATGAATGAGACAT+AGG | + | chr7.2:92893750-92893769 | None:intergenic | 35.0% | |
TCTACTAATATCCTTGTCCA+TGG | + | chr7.2:92896513-92896532 | None:intergenic | 35.0% | |
TGACTCAATTCCTTACTAGT+TGG | + | chr7.2:92894787-92894806 | None:intergenic | 35.0% | |
TGTATAAATGTTCGATGCAC+CGG | + | chr7.2:92896883-92896902 | None:intergenic | 35.0% | |
! | AATGCCCAAGTTAAAGCTTT+TGG | + | chr7.2:92894306-92894325 | None:intergenic | 35.0% |
! | ACTTTGGTTCCTAAATGTGT+GGG | + | chr7.2:92896004-92896023 | None:intergenic | 35.0% |
! | TAACGGTTTGCTTTGGTATT+TGG | + | chr7.2:92896686-92896705 | None:intergenic | 35.0% |
! | TCACTTGTTGGAGTTATTGA+TGG | - | chr7.2:92896230-92896249 | MS.gene91173:intron | 35.0% |
! | TCATATTTTGCAAGAGGTTC+AGG | + | chr7.2:92893768-92893787 | None:intergenic | 35.0% |
! | TCTATTAGCCGCTTTGATTT+AGG | - | chr7.2:92895905-92895924 | MS.gene91173:CDS | 35.0% |
!! | ACTATTTTAGATCCAAACGG+TGG | - | chr7.2:92895221-92895240 | MS.gene91173:intron | 35.0% |
!!! | AGCTTTTGTTGATTCAGACA+AGG | - | chr7.2:92897465-92897484 | MS.gene91173:CDS | 35.0% |
AATGCTTCTGAATTGCCTCA+AGG | - | chr7.2:92895456-92895475 | MS.gene91173:intron | 40.0% | |
ACTAAACCAAACCATGGACA+AGG | - | chr7.2:92896499-92896518 | MS.gene91173:intron | 40.0% | |
AGCTTAAGAACCTTAGGCTT+CGG | - | chr7.2:92895561-92895580 | MS.gene91173:intron | 40.0% | |
AGGTGTATGTTTGGATTGAC+AGG | + | chr7.2:92895634-92895653 | None:intergenic | 40.0% | |
AGTCAACTTTCAGAAGTCAG+GGG | - | chr7.2:92895431-92895450 | MS.gene91173:intron | 40.0% | |
ATAGGAGCTACCACTTTCAT+AGG | + | chr7.2:92893732-92893751 | None:intergenic | 40.0% | |
ATATCGAAGACGTGTTCGAT+AGG | - | chr7.2:92896647-92896666 | MS.gene91173:intron | 40.0% | |
CAATATTGCATCTGCTGCAT+TGG | - | chr7.2:92896352-92896371 | MS.gene91173:intron | 40.0% | |
CAATATTTCACTGAGCGTCA+AGG | - | chr7.2:92894894-92894913 | MS.gene91173:CDS | 40.0% | |
CAGTCAACTTTCAGAAGTCA+GGG | - | chr7.2:92895430-92895449 | MS.gene91173:intron | 40.0% | |
CATGACTAGGAACTGAAGTA+TGG | + | chr7.2:92897144-92897163 | None:intergenic | 40.0% | |
GAAATATTGACCGCCGAAAA+AGG | + | chr7.2:92894883-92894902 | None:intergenic | 40.0% | |
GAAGAATGGTCCAACTAGTA+AGG | - | chr7.2:92894774-92894793 | MS.gene91173:CDS | 40.0% | |
GAAGTTCTTAGCCATTGTGA+GGG | - | chr7.2:92897508-92897527 | MS.gene91173:CDS | 40.0% | |
GACAACACTTGACACATTCA+AGG | + | chr7.2:92895766-92895785 | None:intergenic | 40.0% | |
GAGAAGCTTCATGCTTCTAT+GGG | - | chr7.2:92893828-92893847 | MS.gene91173:CDS | 40.0% | |
GATAATCCTCCATTTCTGCT+TGG | + | chr7.2:92897237-92897256 | None:intergenic | 40.0% | |
GCTGAACCGTTACAACAATT+TGG | + | chr7.2:92896960-92896979 | None:intergenic | 40.0% | |
GCTGAGTTTCACTGACATTA+AGG | - | chr7.2:92897174-92897193 | MS.gene91173:CDS | 40.0% | |
GTAGAATGATTGGCGAACTT+TGG | - | chr7.2:92896528-92896547 | MS.gene91173:intron | 40.0% | |
TAGGAGCTACCACTTTCATA+GGG | + | chr7.2:92893731-92893750 | None:intergenic | 40.0% | |
TATTGAAGCTGGAACAGACA+TGG | + | chr7.2:92895376-92895395 | None:intergenic | 40.0% | |
TCTTCTGGATCTTCACTTGT+TGG | - | chr7.2:92896218-92896237 | MS.gene91173:intron | 40.0% | |
TGAACCGAACTAAACCAGTT+TGG | - | chr7.2:92896735-92896754 | MS.gene91173:intron | 40.0% | |
TGAAGTTCTTAGCCATTGTG+AGG | - | chr7.2:92897507-92897526 | MS.gene91173:CDS | 40.0% | |
TGAATCCTAGAGACTCATCA+GGG | + | chr7.2:92894930-92894949 | None:intergenic | 40.0% | |
TGATTCAGACAAGGCAACTA+AGG | - | chr7.2:92897474-92897493 | MS.gene91173:CDS | 40.0% | |
TGTTAGCGTAAAGACATCGT+TGG | - | chr7.2:92894840-92894859 | MS.gene91173:CDS | 40.0% | |
TGTTCTACAGTGTCTTCTTC+TGG | - | chr7.2:92896203-92896222 | MS.gene91173:intron | 40.0% | |
TGTTTCAGGGTTCCCATTAT+TGG | - | chr7.2:92894042-92894061 | MS.gene91173:CDS | 40.0% | |
TTCATTGAAGTGACTTCTCG+TGG | - | chr7.2:92894093-92894112 | MS.gene91173:intron | 40.0% | |
TTGTTGTAACGGTTCAGCTT+AGG | - | chr7.2:92896962-92896981 | MS.gene91173:intron | 40.0% | |
! | CCAGCCAAAAGCTTTAACTT+GGG | - | chr7.2:92894299-92894318 | MS.gene91173:intron | 40.0% |
! | CTTTGGTTCCTAAATGTGTG+GGG | + | chr7.2:92896003-92896022 | None:intergenic | 40.0% |
! | GAAGCATTTGTTGCTGTTGA+TGG | + | chr7.2:92895148-92895167 | None:intergenic | 40.0% |
! | GACTTTGGTTCCTAAATGTG+TGG | + | chr7.2:92896005-92896024 | None:intergenic | 40.0% |
! | TCCAGCCAAAAGCTTTAACT+TGG | - | chr7.2:92894298-92894317 | MS.gene91173:intron | 40.0% |
!! | AGAAAGGTACCAAGCAGAAA+TGG | - | chr7.2:92897225-92897244 | MS.gene91173:intron | 40.0% |
AACATAGATGCTTCTTCCGG+TGG | - | chr7.2:92897424-92897443 | MS.gene91173:intron | 45.0% | |
AAGTTGACTGGATGTGTTCC+TGG | + | chr7.2:92895420-92895439 | None:intergenic | 45.0% | |
ACCAAAGCTGAATCTCCTTC+CGG | + | chr7.2:92897319-92897338 | None:intergenic | 45.0% | |
ATGCACAAACCAGAAGATGC+AGG | + | chr7.2:92895250-92895269 | None:intergenic | 45.0% | |
ATTGAAGTGACTTCTCGTGG+AGG | - | chr7.2:92894096-92894115 | MS.gene91173:intron | 45.0% | |
CACGTATCGAACACCATACA+TGG | + | chr7.2:92893938-92893957 | None:intergenic | 45.0% | |
CAGGTATTTGTGTGCCTCAT+AGG | - | chr7.2:92897101-92897120 | MS.gene91173:intron | 45.0% | |
CATCCGAAACCTAACAGAAG+TGG | - | chr7.2:92896434-92896453 | MS.gene91173:intron | 45.0% | |
CATGATTTAGCCGAAGCCTA+AGG | + | chr7.2:92895574-92895593 | None:intergenic | 45.0% | |
CATTCACTTCTCCCTCACAA+TGG | + | chr7.2:92897522-92897541 | None:intergenic | 45.0% | |
CCAGTCAACTTTCAGAAGTC+AGG | - | chr7.2:92895429-92895448 | MS.gene91173:intron | 45.0% | |
CTAGAGACTCATCAGGGTTA+GGG | + | chr7.2:92894924-92894943 | None:intergenic | 45.0% | |
CTGAATCCTAGAGACTCATC+AGG | + | chr7.2:92894931-92894950 | None:intergenic | 45.0% | |
CTTAGGCTTCGGCTAAATCA+TGG | - | chr7.2:92895572-92895591 | MS.gene91173:intron | 45.0% | |
GAACCAAACCGTCAATGGTT+TGG | + | chr7.2:92896925-92896944 | None:intergenic | 45.0% | |
GGAGAAGCTTCATGCTTCTA+TGG | - | chr7.2:92893827-92893846 | MS.gene91173:CDS | 45.0% | |
GTAGGTTCAGAGACACTCAA+AGG | - | chr7.2:92896287-92896306 | MS.gene91173:intron | 45.0% | |
GTTGGAGTAAGCAGTGACTT+TGG | + | chr7.2:92896020-92896039 | None:intergenic | 45.0% | |
TCAGACAAGGCAACTAAGGA+GGG | - | chr7.2:92897478-92897497 | MS.gene91173:CDS | 45.0% | |
TGAAATCGCCCCACACATTT+AGG | - | chr7.2:92895992-92896011 | MS.gene91173:intron | 45.0% | |
TGCACAAACCAGAAGATGCA+GGG | + | chr7.2:92895249-92895268 | None:intergenic | 45.0% | |
TTCACCAGAACTACTCTCCT+CGG | + | chr7.2:92897380-92897399 | None:intergenic | 45.0% | |
TTCAGACAAGGCAACTAAGG+AGG | - | chr7.2:92897477-92897496 | MS.gene91173:CDS | 45.0% | |
TTCAGGGTTCCCATTATTGG+AGG | - | chr7.2:92894045-92894064 | MS.gene91173:CDS | 45.0% | |
TTGAAGTGACTTCTCGTGGA+GGG | - | chr7.2:92894097-92894116 | MS.gene91173:intron | 45.0% | |
! | AAGGTACCAAGCAGAAATGG+AGG | - | chr7.2:92897228-92897247 | MS.gene91173:intron | 45.0% |
! | CAATTTTTGCAGCCTTCTCC+AGG | - | chr7.2:92895399-92895418 | MS.gene91173:intron | 45.0% |
! | CCCAAGTTAAAGCTTTTGGC+TGG | + | chr7.2:92894302-92894321 | None:intergenic | 45.0% |
! | CCTGACTTCTGAAAGTTGAC+TGG | + | chr7.2:92895432-92895451 | None:intergenic | 45.0% |
! | GCATCATGACTTTGTTGTGG+TGG | - | chr7.2:92895597-92895616 | MS.gene91173:intron | 45.0% |
! | GTCAGTGTGAGTATTGTGTC+AGG | - | chr7.2:92897082-92897101 | MS.gene91173:intron | 45.0% |
ACTGGATGTGTTCCTGGAGA+AGG | + | chr7.2:92895414-92895433 | None:intergenic | 50.0% | |
AGAATCCACTCTTGCTCCAC+CGG | + | chr7.2:92897443-92897462 | None:intergenic | 50.0% | |
AGCATTGTAACCGACAGCGT+GGG | - | chr7.2:92897274-92897293 | MS.gene91173:intron | 50.0% | |
AGGCTTCGGCTAAATCATGG+CGG | - | chr7.2:92895575-92895594 | MS.gene91173:intron | 50.0% | |
CCTAACCCTGATGAGTCTCT+AGG | - | chr7.2:92894922-92894941 | MS.gene91173:CDS | 50.0% | |
CCTAGAGACTCATCAGGGTT+AGG | + | chr7.2:92894925-92894944 | None:intergenic | 50.0% | |
CTGTTAGGTTTCGGATGTGC+AGG | + | chr7.2:92896431-92896450 | None:intergenic | 50.0% | |
CTTCAACAACGGTTTCCGGA+AGG | - | chr7.2:92897301-92897320 | MS.gene91173:intron | 50.0% | |
GAATCGGGCCAAACCATTGA+CGG | - | chr7.2:92896914-92896933 | MS.gene91173:intron | 50.0% | |
GAGCTGAAGAAGTGACCTTG+AGG | + | chr7.2:92895474-92895493 | None:intergenic | 50.0% | |
GCACAAACCAGAAGATGCAG+GGG | + | chr7.2:92895248-92895267 | None:intergenic | 50.0% | |
GCCACTTCAACAACGGTTTC+CGG | - | chr7.2:92897297-92897316 | MS.gene91173:intron | 50.0% | |
GCGGCATCATGACTTTGTTG+TGG | - | chr7.2:92895594-92895613 | MS.gene91173:intron | 50.0% | |
TCACCAGAACTACTCTCCTC+GGG | + | chr7.2:92897379-92897398 | None:intergenic | 50.0% | |
TCCGGAAACCGTTGTTGAAG+TGG | + | chr7.2:92897301-92897320 | None:intergenic | 50.0% | |
TCCGGAAGGAGATTCAGCTT+TGG | - | chr7.2:92897315-92897334 | MS.gene91173:intron | 50.0% | |
TGTGAGGGAGAAGTGAATGC+TGG | - | chr7.2:92897523-92897542 | MS.gene91173:CDS | 50.0% | |
TTCTCGTGGAGGGATTGAGA+AGG | - | chr7.2:92894107-92894126 | MS.gene91173:intron | 50.0% | |
! | AAGCATTGTAACCGACAGCG+TGG | - | chr7.2:92897273-92897292 | MS.gene91173:intron | 50.0% |
! | GGAAGGAGATTCAGCTTTGG+TGG | - | chr7.2:92897318-92897337 | MS.gene91173:intron | 50.0% |
ACTCCCGAGGAGAGTAGTTC+TGG | - | chr7.2:92897373-92897392 | MS.gene91173:intron | 55.0% | |
AGACTCATCAGGGTTAGGGC+AGG | + | chr7.2:92894920-92894939 | None:intergenic | 55.0% | |
AGTTGAACTCACGCCTTGGC+GGG | + | chr7.2:92894815-92894834 | None:intergenic | 55.0% | |
CGAGAGTTGAACTCACGCCT+TGG | + | chr7.2:92894819-92894838 | None:intergenic | 55.0% | |
CTGACTTCTTCCTCCTCCGA+CGG | + | chr7.2:92896391-92896410 | None:intergenic | 55.0% | |
GAGGGAGAAGTGAATGCTGG+AGG | - | chr7.2:92897526-92897545 | MS.gene91173:CDS | 55.0% | |
GAGTTGAACTCACGCCTTGG+CGG | + | chr7.2:92894816-92894835 | None:intergenic | 55.0% | |
GCATTGTAACCGACAGCGTG+GGG | - | chr7.2:92897275-92897294 | MS.gene91173:intron | 55.0% | |
GGGCCAAACCATTGACGGTT+TGG | - | chr7.2:92896919-92896938 | MS.gene91173:intron | 55.0% | |
TGATTCGTGTCAGACTCCCG+AGG | - | chr7.2:92897360-92897379 | MS.gene91173:intron | 55.0% | |
TTCTTCCGGTGGAGCAAGAG+TGG | - | chr7.2:92897435-92897454 | MS.gene91173:CDS | 55.0% | |
TTGAGTCATATGCCCCGCCA+AGG | - | chr7.2:92894799-92894818 | MS.gene91173:CDS | 55.0% | |
ACTTCTTCCTCCTCCGACGG+CGG | + | chr7.2:92896388-92896407 | None:intergenic | 60.0% | |
AGATGCAGGGGTCCACCGTT+TGG | + | chr7.2:92895236-92895255 | None:intergenic | 60.0% | |
GCGTGGGGCCACTTCAACAA+CGG | - | chr7.2:92897290-92897309 | MS.gene91173:intron | 60.0% | |
GTTGAACTCACGCCTTGGCG+GGG | + | chr7.2:92894814-92894833 | None:intergenic | 60.0% | |
TTGAAGTGGCCCCACGCTGT+CGG | + | chr7.2:92897287-92897306 | None:intergenic | 60.0% | |
CGGTGGACCCCTGCATCTTC+TGG | - | chr7.2:92895238-92895257 | MS.gene91173:intron | 65.0% | |
TCCAACGCCGCCGTCGGAGG+AGG | - | chr7.2:92896378-92896397 | MS.gene91173:intron | 75.0% | |
TCCTCCTCCGACGGCGGCGT+TGG | + | chr7.2:92896382-92896401 | None:intergenic | 75.0% | |
TGGGCGTCCAACGCCGCCGT+CGG | - | chr7.2:92896372-92896391 | MS.gene91173:intron | 75.0% | |
! | GCGTCCAACGCCGCCGTCGG+AGG | - | chr7.2:92896375-92896394 | MS.gene91173:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 92893690 | 92897603 | 92893690 | ID=MS.gene91173 |
chr7.2 | mRNA | 92893690 | 92897603 | 92893690 | ID=MS.gene91173.t1;Parent=MS.gene91173 |
chr7.2 | exon | 92897431 | 92897603 | 92897431 | ID=MS.gene91173.t1.exon1;Parent=MS.gene91173.t1 |
chr7.2 | CDS | 92897431 | 92897603 | 92897431 | ID=cds.MS.gene91173.t1;Parent=MS.gene91173.t1 |
chr7.2 | exon | 92897165 | 92897243 | 92897165 | ID=MS.gene91173.t1.exon2;Parent=MS.gene91173.t1 |
chr7.2 | CDS | 92897165 | 92897243 | 92897165 | ID=cds.MS.gene91173.t1;Parent=MS.gene91173.t1 |
chr7.2 | exon | 92896034 | 92896196 | 92896034 | ID=MS.gene91173.t1.exon3;Parent=MS.gene91173.t1 |
chr7.2 | CDS | 92896034 | 92896196 | 92896034 | ID=cds.MS.gene91173.t1;Parent=MS.gene91173.t1 |
chr7.2 | exon | 92895816 | 92895941 | 92895816 | ID=MS.gene91173.t1.exon4;Parent=MS.gene91173.t1 |
chr7.2 | CDS | 92895816 | 92895941 | 92895816 | ID=cds.MS.gene91173.t1;Parent=MS.gene91173.t1 |
chr7.2 | exon | 92894716 | 92895080 | 92894716 | ID=MS.gene91173.t1.exon5;Parent=MS.gene91173.t1 |
chr7.2 | CDS | 92894716 | 92895080 | 92894716 | ID=cds.MS.gene91173.t1;Parent=MS.gene91173.t1 |
chr7.2 | exon | 92893690 | 92894097 | 92893690 | ID=MS.gene91173.t1.exon6;Parent=MS.gene91173.t1 |
chr7.2 | CDS | 92893690 | 92894097 | 92893690 | ID=cds.MS.gene91173.t1;Parent=MS.gene91173.t1 |
Gene Sequence |
Protein sequence |