Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91274.t1 | KEH38908.1 | 85.2 | 243 | 36 | 0 | 4 | 246 | 1 | 243 | 9.90E-115 | 422.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91274.t1 | A0A072VBY7 | 85.2 | 243 | 36 | 0 | 4 | 246 | 1 | 243 | 7.2e-115 | 422.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene91274.t1 | TF | PLATZ |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91274.t1 | MTR_2g084510 | 84.711 | 242 | 37 | 0 | 5 | 246 | 1 | 242 | 2.28e-152 | 424 |
MS.gene91274.t1 | MTR_2g084525 | 91.770 | 243 | 20 | 0 | 4 | 246 | 1 | 243 | 4.57e-151 | 421 |
MS.gene91274.t1 | MTR_2g084495 | 61.317 | 243 | 81 | 3 | 4 | 246 | 1 | 230 | 1.66e-96 | 282 |
MS.gene91274.t1 | MTR_2g060540 | 76.923 | 143 | 33 | 0 | 3 | 145 | 6 | 148 | 1.64e-78 | 233 |
MS.gene91274.t1 | MTR_2g060500 | 77.857 | 140 | 31 | 0 | 3 | 142 | 6 | 145 | 3.27e-78 | 233 |
MS.gene91274.t1 | MTR_1g062160 | 38.306 | 248 | 100 | 9 | 3 | 245 | 2 | 201 | 3.34e-41 | 140 |
MS.gene91274.t1 | MTR_7g102790 | 38.462 | 247 | 105 | 8 | 1 | 245 | 1 | 202 | 2.63e-38 | 133 |
MS.gene91274.t1 | MTR_4g078170 | 46.809 | 141 | 65 | 3 | 8 | 148 | 16 | 146 | 2.60e-36 | 128 |
MS.gene91274.t1 | MTR_5g030130 | 41.011 | 178 | 88 | 5 | 8 | 180 | 36 | 201 | 6.08e-36 | 127 |
MS.gene91274.t1 | MTR_5g030130 | 45.652 | 138 | 65 | 3 | 8 | 145 | 36 | 163 | 2.71e-35 | 124 |
MS.gene91274.t1 | MTR_5g007230 | 43.972 | 141 | 69 | 3 | 8 | 148 | 22 | 152 | 1.31e-33 | 121 |
MS.gene91274.t1 | MTR_8g066820 | 44.526 | 137 | 66 | 3 | 8 | 144 | 34 | 160 | 2.26e-32 | 118 |
MS.gene91274.t1 | MTR_4g094680 | 39.437 | 142 | 81 | 4 | 9 | 150 | 24 | 160 | 1.77e-25 | 100 |
MS.gene91274.t1 | MTR_2g083710 | 63.934 | 61 | 22 | 0 | 3 | 63 | 2 | 62 | 4.21e-23 | 89.4 |
MS.gene91274.t1 | MTR_4g116300 | 37.589 | 141 | 78 | 4 | 8 | 148 | 6 | 136 | 5.35e-23 | 94.4 |
MS.gene91274.t1 | MTR_2g055210 | 28.740 | 254 | 151 | 10 | 7 | 245 | 101 | 339 | 6.67e-23 | 95.5 |
MS.gene91274.t1 | MTR_2g083720 | 39.669 | 121 | 35 | 2 | 3 | 123 | 2 | 84 | 1.46e-17 | 75.5 |
MS.gene91274.t1 | MTR_2g036170 | 32.653 | 147 | 82 | 5 | 9 | 155 | 39 | 168 | 1.60e-15 | 73.9 |
MS.gene91274.t1 | MTR_8g105930 | 30.968 | 155 | 90 | 5 | 9 | 150 | 15 | 165 | 3.75e-14 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91274.t1 | AT1G43000 | 34.959 | 246 | 123 | 7 | 3 | 245 | 12 | 223 | 3.89e-38 | 133 |
MS.gene91274.t1 | AT1G43000 | 34.959 | 246 | 123 | 7 | 3 | 245 | 5 | 216 | 4.39e-38 | 132 |
MS.gene91274.t1 | AT1G21000 | 35.628 | 247 | 143 | 9 | 3 | 245 | 9 | 243 | 2.30e-37 | 131 |
MS.gene91274.t1 | AT1G21000 | 35.628 | 247 | 143 | 9 | 3 | 245 | 12 | 246 | 2.73e-37 | 131 |
MS.gene91274.t1 | AT1G76590 | 35.000 | 240 | 141 | 8 | 8 | 245 | 19 | 245 | 2.56e-36 | 129 |
MS.gene91274.t1 | AT4G17900 | 47.826 | 138 | 61 | 4 | 8 | 144 | 35 | 162 | 4.13e-35 | 125 |
MS.gene91274.t1 | AT4G17900 | 47.826 | 138 | 61 | 4 | 8 | 144 | 21 | 148 | 9.39e-35 | 124 |
MS.gene91274.t1 | AT1G32700 | 45.714 | 140 | 66 | 3 | 9 | 148 | 14 | 143 | 4.89e-33 | 119 |
MS.gene91274.t1 | AT2G27930 | 47.857 | 140 | 67 | 3 | 9 | 145 | 6 | 142 | 6.30e-32 | 115 |
MS.gene91274.t1 | AT2G27930 | 47.857 | 140 | 67 | 3 | 9 | 145 | 6 | 142 | 6.30e-32 | 115 |
MS.gene91274.t1 | AT2G27930 | 48.175 | 137 | 65 | 3 | 9 | 142 | 6 | 139 | 7.46e-32 | 115 |
MS.gene91274.t1 | AT2G27930 | 48.175 | 137 | 65 | 3 | 9 | 142 | 6 | 139 | 7.46e-32 | 115 |
MS.gene91274.t1 | AT1G32700 | 48.214 | 112 | 49 | 2 | 37 | 148 | 2 | 104 | 9.26e-28 | 104 |
MS.gene91274.t1 | AT5G46710 | 43.796 | 137 | 66 | 4 | 9 | 144 | 30 | 156 | 2.27e-26 | 102 |
MS.gene91274.t1 | AT5G46710 | 43.796 | 137 | 66 | 4 | 9 | 144 | 14 | 140 | 2.49e-26 | 102 |
MS.gene91274.t1 | AT5G46710 | 43.704 | 135 | 65 | 4 | 9 | 142 | 30 | 154 | 6.42e-26 | 99.8 |
MS.gene91274.t1 | AT2G12646 | 39.583 | 144 | 76 | 5 | 5 | 148 | 1 | 133 | 1.52e-24 | 98.6 |
MS.gene91274.t1 | AT2G12646 | 40.000 | 140 | 73 | 5 | 9 | 148 | 8 | 136 | 2.93e-24 | 97.8 |
MS.gene91274.t1 | AT2G12646 | 40.000 | 140 | 73 | 5 | 9 | 148 | 8 | 136 | 2.93e-24 | 97.8 |
MS.gene91274.t1 | AT1G31040 | 35.211 | 142 | 80 | 4 | 9 | 150 | 21 | 150 | 1.06e-22 | 93.2 |
MS.gene91274.t1 | AT2G01818 | 29.752 | 242 | 134 | 10 | 9 | 246 | 13 | 222 | 7.62e-20 | 85.1 |
MS.gene91274.t1 | AT3G60670 | 36.765 | 136 | 75 | 4 | 9 | 144 | 9 | 133 | 4.19e-19 | 83.6 |
MS.gene91274.t1 | AT2G27930 | 51.190 | 84 | 36 | 2 | 62 | 142 | 61 | 142 | 5.34e-17 | 77.0 |
MS.gene91274.t1 | AT2G27930 | 51.190 | 84 | 36 | 2 | 62 | 142 | 61 | 142 | 5.34e-17 | 77.0 |
Find 39 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCTCATTTCTGAACTTGTT+TGG | 0.226434 | 2.3:-13498274 | None:intergenic |
CCAGTTTGCGTTTATCAAAA+AGG | 0.264489 | 2.3:+13499246 | MS.gene91274:intron |
CGCAAGAATTGATGAGAAAA+AGG | 0.267119 | 2.3:+13499402 | MS.gene91274:CDS |
TCCATTTCTTCCATCTCTCT+TGG | 0.271024 | 2.3:-13499289 | None:intergenic |
TTTCCAATGTTGAACCTCTT+AGG | 0.309596 | 2.3:-13498675 | None:intergenic |
CCATTTCTTCCATCTCTCTT+GGG | 0.325447 | 2.3:-13499288 | None:intergenic |
TCTATACAAAATTCACATAA+TGG | 0.333459 | 2.3:-13498328 | None:intergenic |
CCCAAGAGAGATGGAAGAAA+TGG | 0.347606 | 2.3:+13499288 | MS.gene91274:CDS |
CATTTCTGAACTTGTTTGGA+TGG | 0.368188 | 2.3:-13498270 | None:intergenic |
ACCTTGGCTTGTAAACTTGC+TGG | 0.395128 | 2.3:+13498216 | MS.gene91274:CDS |
GAAGCCGATGAGCGATTAAC+CGG | 0.402296 | 2.3:-13499484 | None:intergenic |
AAAGAAAGGGAATAGCTCAT+AGG | 0.424904 | 2.3:+13499527 | MS.gene91274:CDS |
AATGTTGAACCTCTTAGGTT+GGG | 0.427697 | 2.3:-13498670 | None:intergenic |
TGACAGAGAAAGCATTCTTC+CGG | 0.441662 | 2.3:+13499465 | MS.gene91274:CDS |
CAAAGGTCATAGAGTAATAC+AGG | 0.450961 | 2.3:+13498360 | MS.gene91274:CDS |
ATTTCTGAACTTGTTTGGAT+GGG | 0.453864 | 2.3:-13498269 | None:intergenic |
CAATGTTGAACCTCTTAGGT+TGG | 0.476236 | 2.3:-13498671 | None:intergenic |
AAGAAAGGGAATAGCTCATA+GGG | 0.490291 | 2.3:+13499528 | MS.gene91274:CDS |
GAGCTCATGCCCAACCTAAG+AGG | 0.493266 | 2.3:+13498661 | MS.gene91274:CDS |
CACATGTTTGTAAATTTCGA+TGG | 0.514074 | 2.3:-13498577 | None:intergenic |
GCCAGCAAGTTTACAAGCCA+AGG | 0.514131 | 2.3:-13498217 | None:intergenic |
AAAAGAGTCCCTATTGTGAC+CGG | 0.541668 | 2.3:-13498700 | None:intergenic |
ATATCTAGATCAATCAATCA+AGG | 0.554194 | 2.3:+13499315 | MS.gene91274:CDS |
TACAAACATGTGGATATCCT+CGG | 0.556715 | 2.3:+13498588 | MS.gene91274:CDS |
AAGAATGCTTTCTCTGTCAT+CGG | 0.559247 | 2.3:-13499461 | None:intergenic |
CCAAAGAGCAAAAGTAGGTA+GGG | 0.559658 | 2.3:-13498752 | None:intergenic |
AGGATATGATGAGTGTACCT+TGG | 0.561440 | 2.3:+13498200 | MS.gene91274:intron |
TTTCGTAAACCCAAGAGAGA+TGG | 0.562278 | 2.3:+13499279 | MS.gene91274:CDS |
TCTTCCGGTTAATCGCTCAT+CGG | 0.573214 | 2.3:+13499480 | MS.gene91274:CDS |
TCACGTAGGTTTGAATTCCG+AGG | 0.586677 | 2.3:-13498605 | None:intergenic |
GCCAAAGAGCAAAAGTAGGT+AGG | 0.587378 | 2.3:-13498753 | None:intergenic |
AAGAAGATCATCATATAATG+AGG | 0.589252 | 2.3:+13498545 | MS.gene91274:CDS |
CATCGAAATTTACAAACATG+TGG | 0.610863 | 2.3:+13498578 | MS.gene91274:CDS |
CAACCTAAGAGGTTCAACAT+TGG | 0.618975 | 2.3:+13498672 | MS.gene91274:CDS |
GCATGCCAAAGAGCAAAAGT+AGG | 0.621061 | 2.3:-13498757 | None:intergenic |
TGTATAGAATCTCGTCACAA+AGG | 0.625069 | 2.3:+13498343 | MS.gene91274:CDS |
AAGATCATCATATAATGAGG+TGG | 0.649716 | 2.3:+13498548 | MS.gene91274:CDS |
ACTAGAGCTATTAATCACGT+AGG | 0.680389 | 2.3:-13498619 | None:intergenic |
CAAACAAGTTCAGAAATGAG+CGG | 0.722844 | 2.3:+13498275 | MS.gene91274:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATAAAAAAAAAAAATAAT+AGG | - | chr2.3:13498801-13498820 | None:intergenic | 0.0% |
!! | AAGAAAAAATACAAAGAATT+AGG | - | chr2.3:13498154-13498173 | None:intergenic | 15.0% |
!!! | TTTTTCTTAATGCAATTTTT+GGG | + | chr2.3:13498166-13498185 | MS.gene91274:intron | 15.0% |
!!! | TTTTTTCTTAATGCAATTTT+TGG | + | chr2.3:13498165-13498184 | MS.gene91274:intron | 15.0% |
!! | ATTAATAGTAATAAAAGGAG+TGG | - | chr2.3:13498879-13498898 | None:intergenic | 20.0% |
!! | TCTATACAAAATTCACATAA+TGG | - | chr2.3:13498331-13498350 | None:intergenic | 20.0% |
!!! | AATAGTTGGCAAATTTTAAT+TGG | + | chr2.3:13499055-13499074 | MS.gene91274:intron | 20.0% |
!!! | AGAATTTTTCAAGAAATAGT+TGG | + | chr2.3:13499041-13499060 | MS.gene91274:intron | 20.0% |
!!! | ATAATATTTTGCAATGATCT+AGG | + | chr2.3:13498415-13498434 | MS.gene91274:intron | 20.0% |
!!! | TCCTTTTATTACTATTAATC+CGG | + | chr2.3:13498880-13498899 | MS.gene91274:intron | 20.0% |
!!! | TTTGTTTTCTTTTTGAAAGA+AGG | + | chr2.3:13498987-13499006 | MS.gene91274:intron | 20.0% |
! | AAGAAGATCATCATATAATG+AGG | + | chr2.3:13498545-13498564 | MS.gene91274:CDS | 25.0% |
! | AAGCCAAATTCAAAAAGAAA+GGG | + | chr2.3:13499514-13499533 | MS.gene91274:CDS | 25.0% |
! | ATATCTAGATCAATCAATCA+AGG | + | chr2.3:13499315-13499334 | MS.gene91274:CDS | 25.0% |
! | TCCGGATTAATAGTAATAAA+AGG | - | chr2.3:13498884-13498903 | None:intergenic | 25.0% |
!! | ATTCCCTTTCTTTTTGAATT+TGG | - | chr2.3:13499520-13499539 | None:intergenic | 25.0% |
!!! | ATGTTTTAAACGGTAACAAA+TGG | + | chr2.3:13498822-13498841 | MS.gene91274:intron | 25.0% |
!!! | ATTTTTGGGTTTTGTTTCTT+AGG | + | chr2.3:13498180-13498199 | MS.gene91274:intron | 25.0% |
!!! | TTTTTTGCCTTCTCTTTTTT+AGG | - | chr2.3:13499346-13499365 | None:intergenic | 25.0% |
AAGATCATCATATAATGAGG+TGG | + | chr2.3:13498548-13498567 | MS.gene91274:CDS | 30.0% | |
AATTGATGAGAAAAAGGAAG+AGG | + | chr2.3:13499408-13499427 | MS.gene91274:CDS | 30.0% | |
ATCAACATGAGTACAATAAC+TGG | - | chr2.3:13498967-13498986 | None:intergenic | 30.0% | |
CAAGCCAAATTCAAAAAGAA+AGG | + | chr2.3:13499513-13499532 | MS.gene91274:CDS | 30.0% | |
CACATGTTTGTAAATTTCGA+TGG | - | chr2.3:13498580-13498599 | None:intergenic | 30.0% | |
CATCGAAATTTACAAACATG+TGG | + | chr2.3:13498578-13498597 | MS.gene91274:CDS | 30.0% | |
TTTGCGTTTATCAAAAAGGA+TGG | + | chr2.3:13499250-13499269 | MS.gene91274:CDS | 30.0% | |
! | ACTTTTCTTTCAACCATTAC+CGG | + | chr2.3:13498937-13498956 | MS.gene91274:intron | 30.0% |
! | ATTTCTGAACTTGTTTGGAT+GGG | - | chr2.3:13498272-13498291 | None:intergenic | 30.0% |
AAAGAAAGGGAATAGCTCAT+AGG | + | chr2.3:13499527-13499546 | MS.gene91274:CDS | 35.0% | |
AAGAAAGGGAATAGCTCATA+GGG | + | chr2.3:13499528-13499547 | MS.gene91274:CDS | 35.0% | |
AAGAATGCTTTCTCTGTCAT+CGG | - | chr2.3:13499464-13499483 | None:intergenic | 35.0% | |
AATAACTGGTATTCCGGTAA+TGG | - | chr2.3:13498953-13498972 | None:intergenic | 35.0% | |
AATGTTGAACCTCTTAGGTT+GGG | - | chr2.3:13498673-13498692 | None:intergenic | 35.0% | |
ACTAGAGCTATTAATCACGT+AGG | - | chr2.3:13498622-13498641 | None:intergenic | 35.0% | |
ACTATTAATCCGGAGATTGA+AGG | + | chr2.3:13498890-13498909 | MS.gene91274:intron | 35.0% | |
AGGAAGACGTAGAAAAAGAA+AGG | + | chr2.3:13499428-13499447 | MS.gene91274:CDS | 35.0% | |
AGGTTCAACATTGGAAAAAC+CGG | + | chr2.3:13498681-13498700 | MS.gene91274:CDS | 35.0% | |
CAAACAAGTTCAGAAATGAG+CGG | + | chr2.3:13498275-13498294 | MS.gene91274:CDS | 35.0% | |
CAAAGGTCATAGAGTAATAC+AGG | + | chr2.3:13498360-13498379 | MS.gene91274:CDS | 35.0% | |
CCAGTTTGCGTTTATCAAAA+AGG | + | chr2.3:13499246-13499265 | MS.gene91274:intron | 35.0% | |
CGCAAGAATTGATGAGAAAA+AGG | + | chr2.3:13499402-13499421 | MS.gene91274:CDS | 35.0% | |
GAGTACAATAACTGGTATTC+CGG | - | chr2.3:13498959-13498978 | None:intergenic | 35.0% | |
GGAAGACGTAGAAAAAGAAA+GGG | + | chr2.3:13499429-13499448 | MS.gene91274:CDS | 35.0% | |
GTAGAAAAAGAAAGGGAAGA+AGG | + | chr2.3:13499436-13499455 | MS.gene91274:CDS | 35.0% | |
TACAAACATGTGGATATCCT+CGG | + | chr2.3:13498588-13498607 | MS.gene91274:CDS | 35.0% | |
TGTATAGAATCTCGTCACAA+AGG | + | chr2.3:13498343-13498362 | MS.gene91274:CDS | 35.0% | |
TTTCCAATGTTGAACCTCTT+AGG | - | chr2.3:13498678-13498697 | None:intergenic | 35.0% | |
! | CATTTCTGAACTTGTTTGGA+TGG | - | chr2.3:13498273-13498292 | None:intergenic | 35.0% |
! | CCTTTTTGATAAACGCAAAC+TGG | - | chr2.3:13499249-13499268 | None:intergenic | 35.0% |
AAAAGAGTCCCTATTGTGAC+CGG | - | chr2.3:13498703-13498722 | None:intergenic | 40.0% | |
AGGATATGATGAGTGTACCT+TGG | + | chr2.3:13498200-13498219 | MS.gene91274:intron | 40.0% | |
CAACCTAAGAGGTTCAACAT+TGG | + | chr2.3:13498672-13498691 | MS.gene91274:CDS | 40.0% | |
CAATGTTGAACCTCTTAGGT+TGG | - | chr2.3:13498674-13498693 | None:intergenic | 40.0% | |
CATCATATGCCTTCAATCTC+CGG | - | chr2.3:13498902-13498921 | None:intergenic | 40.0% | |
CCAAAGAGCAAAAGTAGGTA+GGG | - | chr2.3:13498755-13498774 | None:intergenic | 40.0% | |
CCATTTCTTCCATCTCTCTT+GGG | - | chr2.3:13499291-13499310 | None:intergenic | 40.0% | |
CTATTTGCCACAATTCAAGG+AGG | - | chr2.3:13499117-13499136 | None:intergenic | 40.0% | |
GCACTATTTGCCACAATTCA+AGG | - | chr2.3:13499120-13499139 | None:intergenic | 40.0% | |
GCGTTTATCAAAAAGGATGG+TGG | + | chr2.3:13499253-13499272 | MS.gene91274:CDS | 40.0% | |
GTGGCTGAAAAATAGGAAGT+GGG | - | chr2.3:13499093-13499112 | None:intergenic | 40.0% | |
TCCATTTCTTCCATCTCTCT+TGG | - | chr2.3:13499292-13499311 | None:intergenic | 40.0% | |
TGGAAAAACCGGTCACAATA+GGG | + | chr2.3:13498692-13498711 | MS.gene91274:CDS | 40.0% | |
TGTGGCTGAAAAATAGGAAG+TGG | - | chr2.3:13499094-13499113 | None:intergenic | 40.0% | |
TTGGAAAAACCGGTCACAAT+AGG | + | chr2.3:13498691-13498710 | MS.gene91274:CDS | 40.0% | |
TTTCGTAAACCCAAGAGAGA+TGG | + | chr2.3:13499279-13499298 | MS.gene91274:CDS | 40.0% | |
! | ATGGATTTTCATTGCAGTCG+AGG | - | chr2.3:13498312-13498331 | None:intergenic | 40.0% |
! | CGCTCATTTCTGAACTTGTT+TGG | - | chr2.3:13498277-13498296 | None:intergenic | 40.0% |
! | TGGCATGCAAGGTGAAATTT+TGG | + | chr2.3:13498772-13498791 | MS.gene91274:intron | 40.0% |
!! | TGACAGAGAAAGCATTCTTC+CGG | + | chr2.3:13499465-13499484 | MS.gene91274:CDS | 40.0% |
CCCAAGAGAGATGGAAGAAA+TGG | + | chr2.3:13499288-13499307 | MS.gene91274:CDS | 45.0% | |
GCATGCCAAAGAGCAAAAGT+AGG | - | chr2.3:13498760-13498779 | None:intergenic | 45.0% | |
GCCAAAGAGCAAAAGTAGGT+AGG | - | chr2.3:13498756-13498775 | None:intergenic | 45.0% | |
GGCATCGCCTAAAAAAGAGA+AGG | + | chr2.3:13499336-13499355 | MS.gene91274:CDS | 45.0% | |
TCACGTAGGTTTGAATTCCG+AGG | - | chr2.3:13498608-13498627 | None:intergenic | 45.0% | |
TCTTCCGGTTAATCGCTCAT+CGG | + | chr2.3:13499480-13499499 | MS.gene91274:CDS | 45.0% | |
! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr2.3:13499100-13499119 | None:intergenic | 45.0% |
! | CGGAGATTGAAGGCATATGA+TGG | + | chr2.3:13498900-13498919 | MS.gene91274:intron | 45.0% |
! | CTTTTGCTCTTTGGCATGCA+AGG | + | chr2.3:13498761-13498780 | MS.gene91274:CDS | 45.0% |
!! | ACCTTGGCTTGTAAACTTGC+TGG | + | chr2.3:13498216-13498235 | MS.gene91274:CDS | 45.0% |
!! | CCCTACCTACTTTTGCTCTT+TGG | + | chr2.3:13498752-13498771 | MS.gene91274:CDS | 45.0% |
!!! | TTTTTATATTATGTTTTAAA+CGG | + | chr2.3:13498812-13498831 | MS.gene91274:intron | 5.0% |
AGCCACACCTCCTTGAATTG+TGG | + | chr2.3:13499107-13499126 | MS.gene91274:intron | 50.0% | |
GAAGCCGATGAGCGATTAAC+CGG | - | chr2.3:13499487-13499506 | None:intergenic | 50.0% | |
GCCAGCAAGTTTACAAGCCA+AGG | - | chr2.3:13498220-13498239 | None:intergenic | 50.0% | |
TGCCACAATTCAAGGAGGTG+TGG | - | chr2.3:13499112-13499131 | None:intergenic | 50.0% | |
GAGCTCATGCCCAACCTAAG+AGG | + | chr2.3:13498661-13498680 | MS.gene91274:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 13498110 | 13499564 | 13498110 | ID=MS.gene91274 |
chr2.3 | mRNA | 13498110 | 13499564 | 13498110 | ID=MS.gene91274.t1;Parent=MS.gene91274 |
chr2.3 | exon | 13498110 | 13498115 | 13498110 | ID=MS.gene91274.t1.exon1;Parent=MS.gene91274.t1 |
chr2.3 | CDS | 13498110 | 13498115 | 13498110 | ID=cds.MS.gene91274.t1;Parent=MS.gene91274.t1 |
chr2.3 | exon | 13498202 | 13498381 | 13498202 | ID=MS.gene91274.t1.exon2;Parent=MS.gene91274.t1 |
chr2.3 | CDS | 13498202 | 13498381 | 13498202 | ID=cds.MS.gene91274.t1;Parent=MS.gene91274.t1 |
chr2.3 | exon | 13498543 | 13498782 | 13498543 | ID=MS.gene91274.t1.exon3;Parent=MS.gene91274.t1 |
chr2.3 | CDS | 13498543 | 13498782 | 13498543 | ID=cds.MS.gene91274.t1;Parent=MS.gene91274.t1 |
chr2.3 | exon | 13499250 | 13499564 | 13499250 | ID=MS.gene91274.t1.exon4;Parent=MS.gene91274.t1 |
chr2.3 | CDS | 13499250 | 13499564 | 13499250 | ID=cds.MS.gene91274.t1;Parent=MS.gene91274.t1 |
Gene Sequence |
Protein sequence |