AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91304

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91304.t1 MTR_1g106470 70.588 306 57 3 1 293 1 286 1.03e-142 403
MS.gene91304.t1 MTR_1g106470 64.981 257 57 3 1 244 1 237 1.54e-103 302
MS.gene91304.t1 MTR_5g005110 46.588 337 120 14 1 297 1 317 6.13e-72 225
MS.gene91304.t1 MTR_1g106480 69.412 170 8 3 154 293 1 156 1.04e-68 211
MS.gene91304.t1 MTR_1g106460 40.774 336 151 9 1 295 1 329 2.04e-62 200
MS.gene91304.t1 MTR_3g103030 51.724 174 77 3 119 287 142 313 1.97e-48 164
MS.gene91304.t1 MTR_1g106490 69.231 104 28 1 23 122 24 127 2.62e-42 142
MS.gene91304.t1 MTR_1g018090 81.818 77 14 0 202 278 273 349 2.81e-38 139
MS.gene91304.t1 MTR_5g005110 40.357 280 112 12 1 242 1 263 6.83e-38 135
MS.gene91304.t1 MTR_1g106460 32.979 282 142 8 1 241 1 276 1.16e-28 111
MS.gene91304.t1 MTR_5g079500 52.809 89 41 1 183 271 199 286 2.30e-24 100
MS.gene91304.t1 MTR_8g093500 55.072 69 31 0 199 267 110 178 7.26e-18 82.0
MS.gene91304.t1 MTR_4g131160 56.716 67 29 0 200 266 193 259 3.05e-17 81.6
MS.gene91304.t1 MTR_4g131160 56.716 67 29 0 200 266 196 262 3.28e-17 81.6
MS.gene91304.t1 MTR_3g101810 42.056 107 56 2 193 297 163 265 3.39e-17 80.1
MS.gene91304.t1 MTR_1g080890 53.425 73 34 0 194 266 184 256 1.20e-16 79.7
MS.gene91304.t1 MTR_7g069590 56.364 55 24 0 210 264 33 87 2.85e-15 72.0
MS.gene91304.t1 MTR_1g018090 72.727 44 12 0 202 245 273 316 6.38e-14 71.2
MS.gene91304.t1 MTR_1g084980 50.877 57 28 0 210 266 469 525 7.87e-14 72.0
MS.gene91304.t1 MTR_1g019240 38.824 85 50 1 196 280 80 162 9.18e-14 70.1
MS.gene91304.t1 MTR_3g449770 41.772 79 36 2 199 272 300 373 6.79e-13 68.9
MS.gene91304.t1 MTR_7g053410 47.368 76 39 1 192 266 306 381 1.83e-12 67.8
MS.gene91304.t1 MTR_7g053410 47.368 76 39 1 192 266 306 381 1.92e-12 67.8
MS.gene91304.t1 MTR_5g017040 39.706 68 41 0 212 279 114 181 4.39e-12 66.2
MS.gene91304.t1 MTR_8g012290 38.614 101 52 2 192 291 280 371 2.38e-11 64.3
MS.gene91304.t1 MTR_8g012290 38.614 101 52 2 192 291 280 371 2.40e-11 64.3
MS.gene91304.t1 MTR_7g099540 45.614 57 31 0 210 266 259 315 2.72e-11 64.3
MS.gene91304.t1 MTR_1g070870 47.423 97 48 2 173 266 90 186 3.90e-11 62.8
MS.gene91304.t1 MTR_1g069155 38.889 72 44 0 195 266 309 380 7.02e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91304.t1 AT2G14760 38.957 326 155 11 10 294 6 328 7.50e-50 168
MS.gene91304.t1 AT2G14760 37.463 339 155 12 10 294 6 341 3.56e-46 159
MS.gene91304.t1 AT4G33880 36.782 348 143 13 10 285 6 348 1.08e-44 155
MS.gene91304.t1 AT5G43175 71.134 97 28 0 189 285 118 214 3.10e-44 150
MS.gene91304.t1 AT1G27740 73.563 87 23 0 199 285 163 249 1.41e-41 144
MS.gene91304.t1 AT5G37800 50.000 98 44 2 174 271 177 269 6.49e-23 96.7
MS.gene91304.t1 AT1G66470 58.333 72 29 1 200 271 193 263 5.38e-22 94.0
MS.gene91304.t1 AT2G24260 51.852 81 39 0 197 277 29 109 1.84e-19 85.9
MS.gene91304.t1 AT2G24260 58.571 70 29 0 197 266 132 201 6.13e-19 86.3
MS.gene91304.t1 AT4G30980 57.143 70 30 0 197 266 124 193 1.17e-18 84.7
MS.gene91304.t1 AT4G30980 57.143 70 30 0 197 266 172 241 1.50e-18 85.1
MS.gene91304.t1 AT5G58010 44.898 98 52 1 171 266 65 162 2.44e-17 80.9
MS.gene91304.t1 AT3G21330 49.383 81 36 2 185 265 256 331 1.66e-16 79.3
MS.gene91304.t1 AT5G01305 51.613 62 30 0 201 262 35 96 6.88e-16 74.3
MS.gene91304.t1 AT4G00120 53.704 54 25 0 212 265 121 174 2.75e-15 73.2
MS.gene91304.t1 AT1G09530 43.939 66 37 0 210 275 344 409 2.80e-13 70.5
MS.gene91304.t1 AT1G09530 43.939 66 37 0 210 275 344 409 2.80e-13 70.5
MS.gene91304.t1 AT1G09530 43.939 66 37 0 210 275 344 409 2.80e-13 70.5
MS.gene91304.t1 AT1G09530 43.939 66 37 0 210 275 344 409 2.80e-13 70.5
MS.gene91304.t1 AT1G09530 43.939 66 37 0 210 275 344 409 2.80e-13 70.5
MS.gene91304.t1 AT1G09530 43.939 66 37 0 210 275 344 409 2.80e-13 70.5
MS.gene91304.t1 AT4G36930 37.838 74 46 0 210 283 198 271 1.33e-12 67.8
MS.gene91304.t1 AT5G50915 34.395 157 91 5 139 287 65 217 1.38e-12 67.0
MS.gene91304.t1 AT5G50915 34.395 157 91 5 139 287 65 217 1.38e-12 67.0
MS.gene91304.t1 AT5G50915 34.395 157 91 5 139 287 65 217 1.66e-12 66.6
MS.gene91304.t1 AT5G50915 34.395 157 91 5 139 287 65 217 1.66e-12 66.6
MS.gene91304.t1 AT3G23690 44.737 76 41 1 192 266 180 255 1.34e-11 64.7
MS.gene91304.t1 AT5G48560 46.053 76 40 1 192 266 290 365 1.86e-11 64.7
MS.gene91304.t1 AT2G20180 47.368 57 30 0 210 266 214 270 1.93e-11 64.7
MS.gene91304.t1 AT2G20180 47.368 57 30 0 210 266 214 270 1.93e-11 64.7
MS.gene91304.t1 AT2G20180 47.368 57 30 0 210 266 214 270 1.93e-11 64.7
MS.gene91304.t1 AT2G20180 47.368 57 30 0 210 266 285 341 1.95e-11 64.7
MS.gene91304.t1 AT2G20180 47.368 57 30 0 210 266 285 341 1.95e-11 64.7
MS.gene91304.t1 AT2G20180 47.368 57 30 0 210 266 285 341 1.95e-11 64.7
MS.gene91304.t1 AT2G20180 47.368 57 30 0 210 266 285 341 1.95e-11 64.7
MS.gene91304.t1 AT5G48560 46.053 76 40 1 192 266 290 365 2.12e-11 64.7
MS.gene91304.t1 AT4G00050 46.154 52 28 0 219 270 121 172 5.58e-11 62.4
MS.gene91304.t1 AT4G00050 46.154 52 28 0 219 270 223 274 9.84e-11 62.4

Find 63 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTTAGTCCACAATATT+TGG 0.147520 1.3:-73014698 MS.gene91304:CDS
CAAATATTGTGGACTAAATT+TGG 0.154244 1.3:+73014699 None:intergenic
TGGCTCATAGAACCAGATTT+TGG 0.215361 1.3:+73014301 None:intergenic
TTCTCTTCTCCAACTAAATT+AGG 0.240816 1.3:-73013411 MS.gene91304:CDS
GCTTACAATGGAATAAATAT+TGG 0.247349 1.3:-73013447 MS.gene91304:CDS
TGGAACCCATTCATGTGATT+TGG 0.268183 1.3:-73014767 MS.gene91304:CDS
CCCATTCTTCAGAAATCAAT+TGG 0.299308 1.3:+73014899 None:intergenic
CTACGCAACTTAGGTGCTTC+AGG 0.318498 1.3:+73014166 None:intergenic
CAGAAAATATAAGGAATGTT+AGG 0.319597 1.3:-73014330 MS.gene91304:CDS
CCCAATTGATTTCTGAAGAA+TGG 0.332468 1.3:-73014900 MS.gene91304:CDS
TGTAGGTTTCAGAAAATATA+AGG 0.339371 1.3:-73014339 MS.gene91304:intron
AAATCTACCTTAGTTCCATT+TGG 0.344620 1.3:+73013754 None:intergenic
TTTATTCCATTGTAAGCAAT+TGG 0.346999 1.3:+73013453 None:intergenic
GGAACCCATTCATGTGATTT+GGG 0.350013 1.3:-73014766 MS.gene91304:CDS
GACTTCATGGCTCAGTTCCT+TGG 0.360528 1.3:-73014841 MS.gene91304:CDS
ATTCATCTTCCTAATTTAGT+TGG 0.363312 1.3:+73013402 None:intergenic
CCAATTGATTTCTGAAGAAT+GGG 0.373736 1.3:-73014899 MS.gene91304:CDS
AATCTACCTTAGTTCCATTT+GGG 0.385383 1.3:+73013755 None:intergenic
GTTAGGAAATGTCCAAAATC+TGG 0.392760 1.3:-73014313 MS.gene91304:CDS
GAAGAATGGGATTCTCTTAG+TGG 0.394320 1.3:-73014886 MS.gene91304:CDS
TTGTTCCCAAATCACATGAA+TGG 0.399061 1.3:+73014761 None:intergenic
GCTCAGTTCCTTGGTTGTAA+TGG 0.403811 1.3:-73014832 MS.gene91304:CDS
TCTTGTTGAAAACAATTTGC+GGG 0.406671 1.3:-73014614 MS.gene91304:CDS
AGCCGAGGAAGCTGACTTCA+TGG 0.435912 1.3:-73014854 MS.gene91304:CDS
TGTTCCCAAATCACATGAAT+GGG 0.437898 1.3:+73014762 None:intergenic
TGTTGGAGCCATGCCACGTT+AGG 0.453646 1.3:+73014266 None:intergenic
TTGCAAACTCTTGTCCCAAA+TGG 0.455826 1.3:-73013769 MS.gene91304:CDS
ACTAAATTTGGCATCTTCCA+TGG 0.457758 1.3:+73014711 None:intergenic
TCTTGTCCCAAATGGAACTA+AGG 0.473754 1.3:-73013761 MS.gene91304:intron
GAATGGGTTCCATTACTTGA+AGG 0.488758 1.3:+73014778 None:intergenic
TATGAATGCATTAATCATGA+AGG 0.497393 1.3:-73014649 MS.gene91304:CDS
ATGCTTTGTGCATCAGTGGC+AGG 0.503605 1.3:+73014121 None:intergenic
TTCTTGTTGAAAACAATTTG+CGG 0.503995 1.3:-73014615 MS.gene91304:CDS
TGCATTAATCATGAAGGGCC+GGG 0.507871 1.3:-73014643 MS.gene91304:CDS
AACCTGTGGAAAACAGTTGT+TGG 0.508340 1.3:+73014249 None:intergenic
GAAGAGAAAGAATAAATGAA+AGG 0.522466 1.3:-73013801 MS.gene91304:CDS
ATGCATTAATCATGAAGGGC+CGG 0.525603 1.3:-73014644 MS.gene91304:CDS
CCATTCTTCAGAAATCAATT+GGG 0.537373 1.3:+73014900 None:intergenic
TTACTTGAAGGAAAATAAGA+TGG 0.542752 1.3:+73014790 None:intergenic
AGCCATGAAGTCAGCTTCCT+CGG 0.543459 1.3:+73014852 None:intergenic
AAGTTATGATCCAAATATTG+TGG 0.544900 1.3:+73014688 None:intergenic
ATGAATGCATTAATCATGAA+GGG 0.569600 1.3:-73014648 MS.gene91304:CDS
TGAAGGAAAATAAGATGGCA+TGG 0.574425 1.3:+73014795 None:intergenic
AAACAATTTGCGGGATGAGA+GGG 0.575684 1.3:-73014605 MS.gene91304:CDS
GAAGAGGGCCTAACGTGGCA+TGG 0.579675 1.3:-73014274 MS.gene91304:CDS
AAAACAATTTGCGGGATGAG+AGG 0.581008 1.3:-73014606 MS.gene91304:CDS
AGAAAATCGAAGGCAGGAAG+TGG 0.581938 1.3:-73014145 MS.gene91304:CDS
ACGTTAGGCCCTCTTCATTG+TGG 0.582294 1.3:+73014281 None:intergenic
TTGCGTAGAAAATCGAAGGC+AGG 0.583966 1.3:-73014151 MS.gene91304:CDS
AATGATGATGACTTCAGAAG+AGG 0.597972 1.3:-73014575 MS.gene91304:CDS
TCTATGAGCCACAATGAAGA+GGG 0.604923 1.3:-73014289 MS.gene91304:CDS
TATGCTCCAATTGCTTACAA+TGG 0.606083 1.3:-73013459 MS.gene91304:CDS
GGATATTAGTACCATGCTTG+AGG 0.607564 1.3:-73013642 MS.gene91304:CDS
TTCTATGAGCCACAATGAAG+AGG 0.608991 1.3:-73014290 MS.gene91304:CDS
TAGTTGGAGAAGAGAAGCTG+AGG 0.609048 1.3:+73013418 None:intergenic
TTGGACAGCTTCCTCAAGCA+TGG 0.619471 1.3:+73013631 None:intergenic
TAAGTTGCGTAGAAAATCGA+AGG 0.620676 1.3:-73014155 MS.gene91304:CDS
AAGATTTAGGAGCTCACTAG+AGG 0.634903 1.3:-73014521 MS.gene91304:intron
TAGTGTTTCCATTACAACCA+AGG 0.635141 1.3:+73014824 None:intergenic
ATAAATGCTTTGTGCATCAG+TGG 0.654510 1.3:+73014117 None:intergenic
AAAGGATTAGAGTTAACCTG+TGG 0.678724 1.3:+73014235 None:intergenic
ACAATGAAGAGGGCCTAACG+TGG 0.686185 1.3:-73014279 MS.gene91304:CDS
TAGTGGACAGTACACAGCCG+AGG 0.694851 1.3:-73014869 MS.gene91304:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTCATTGTTTATTTATTTAT+TGG - chr1.3:73014794-73014813 MS.gene91304:CDS 15.0%
!! ATTGAACTATTACTCAATAA+TGG - chr1.3:73014598-73014617 MS.gene91304:CDS 20.0%
!! TTGAACTATTACTCAATAAT+GGG - chr1.3:73014599-73014618 MS.gene91304:CDS 20.0%
!!! TAAGTGCATATTTAGAATTA+CGG + chr1.3:73014369-73014388 None:intergenic 20.0%
!!! TAATCATGATTTTACTATGT+AGG - chr1.3:73013958-73013977 MS.gene91304:intron 20.0%
!!! TAGAGGTATAATAATAGTTA+AGG - chr1.3:73013810-73013829 MS.gene91304:intron 20.0%
!!! TTTTTTTGTTTGTGAATTGT+AGG - chr1.3:73014648-73014667 MS.gene91304:CDS 20.0%
! AAGTTATGATCCAAATATTG+TGG + chr1.3:73013629-73013648 None:intergenic 25.0%
! ACATTTCTTTAGTGCATATT+TGG - chr1.3:73014244-73014263 MS.gene91304:CDS 25.0%
! ATGAATGCATTAATCATGAA+GGG - chr1.3:73013666-73013685 MS.gene91304:intron 25.0%
! CAAATTTAGTCCACAATATT+TGG - chr1.3:73013616-73013635 MS.gene91304:CDS 25.0%
! CAGAAAATATAAGGAATGTT+AGG - chr1.3:73013984-73014003 MS.gene91304:intron 25.0%
! GAAGAGAAAGAATAAATGAA+AGG - chr1.3:73014513-73014532 MS.gene91304:intron 25.0%
! GCATACAAGAAATTGAAAAA+TGG + chr1.3:73014758-73014777 None:intergenic 25.0%
! GCTTACAATGGAATAAATAT+TGG - chr1.3:73014867-73014886 MS.gene91304:CDS 25.0%
! TATGAATGCATTAATCATGA+AGG - chr1.3:73013665-73013684 MS.gene91304:intron 25.0%
! TGTAGGTTTCAGAAAATATA+AGG - chr1.3:73013975-73013994 MS.gene91304:intron 25.0%
! TTACTTGAAGGAAAATAAGA+TGG + chr1.3:73013527-73013546 None:intergenic 25.0%
! TTCTTGTTGAAAACAATTTG+CGG - chr1.3:73013699-73013718 MS.gene91304:intron 25.0%
! TTTATTCCATTGTAAGCAAT+TGG + chr1.3:73014864-73014883 None:intergenic 25.0%
!! ACAATATGTTACCATGATTT+TGG - chr1.3:73014289-73014308 MS.gene91304:CDS 25.0%
!! CAAATATTGTGGACTAAATT+TGG + chr1.3:73013618-73013637 None:intergenic 25.0%
!! GCATTCATAGTTTATCTTTT+TGG + chr1.3:73013654-73013673 None:intergenic 25.0%
!!! TCTTATTTTCCTTCAAGTAA+TGG - chr1.3:73013527-73013546 MS.gene91304:intron 25.0%
AAATCTACCTTAGTTCCATT+TGG + chr1.3:73014563-73014582 None:intergenic 30.0%
AATCTACCTTAGTTCCATTT+GGG + chr1.3:73014562-73014581 None:intergenic 30.0%
ACAGTAGTCAGTAGTTTAAT+TGG + chr1.3:73014420-73014439 None:intergenic 30.0%
ACTAAAGAAATGTCCTTCAA+AGG + chr1.3:73014237-73014256 None:intergenic 30.0%
AGAGGATAAAAGCAAAAACT+TGG - chr1.3:73013757-73013776 MS.gene91304:intron 30.0%
AGTTAAACGTCTCTCATTAT+AGG - chr1.3:73014463-73014482 MS.gene91304:intron 30.0%
ATCTTCCATGGAAAAAAACA+TGG + chr1.3:73013594-73013613 None:intergenic 30.0%
CCATTCTTCAGAAATCAATT+GGG + chr1.3:73013417-73013436 None:intergenic 30.0%
CTAAAGAAATGTCCTTCAAA+GGG + chr1.3:73014236-73014255 None:intergenic 30.0%
GAACTAAGGTAGATTTCTTA+AGG - chr1.3:73014567-73014586 MS.gene91304:CDS 30.0%
GAGGATAAAAGCAAAAACTT+GGG - chr1.3:73013758-73013777 MS.gene91304:intron 30.0%
TCTTGTTGAAAACAATTTGC+GGG - chr1.3:73013700-73013719 MS.gene91304:intron 30.0%
TTCTCTTCTCCAACTAAATT+AGG - chr1.3:73014903-73014922 MS.gene91304:CDS 30.0%
! CCAATTGATTTCTGAAGAAT+GGG - chr1.3:73013415-73013434 MS.gene91304:CDS 30.0%
! CGTAACTTTTACCAAAATCA+TGG + chr1.3:73014303-73014322 None:intergenic 30.0%
! GTTTTTGCAGCTTCAAATTA+AGG - chr1.3:73014714-73014733 MS.gene91304:CDS 30.0%
! TAAACTACTGACTACTGTAT+TGG - chr1.3:73014422-73014441 MS.gene91304:intron 30.0%
! TCTTTTAGGCTTAGAATTGA+AGG + chr1.3:73014127-73014146 None:intergenic 30.0%
! TTTTCAACAAGAACTAAACC+CGG + chr1.3:73013692-73013711 None:intergenic 30.0%
!! TACTCAATAATGGGTTAAGA+TGG - chr1.3:73014608-73014627 MS.gene91304:CDS 30.0%
!! TTTTGTTTGTGAATTGTAGG+TGG - chr1.3:73014651-73014670 MS.gene91304:CDS 30.0%
AAAGGATTAGAGTTAACCTG+TGG + chr1.3:73014082-73014101 None:intergenic 35.0%
ACTAAATTTGGCATCTTCCA+TGG + chr1.3:73013606-73013625 None:intergenic 35.0%
ATAAATGCTTTGTGCATCAG+TGG + chr1.3:73014200-73014219 None:intergenic 35.0%
CATGGAAAAAAACATGGACA+AGG + chr1.3:73013588-73013607 None:intergenic 35.0%
CCCATTCTTCAGAAATCAAT+TGG + chr1.3:73013418-73013437 None:intergenic 35.0%
GAAACCCTGCAAAAAGATTT+AGG - chr1.3:73013780-73013799 MS.gene91304:CDS 35.0%
GCTGCAAAAACTTCACATAT+TGG + chr1.3:73014705-73014724 None:intergenic 35.0%
GTGAATTTGATGAATCACGA+TGG + chr1.3:73014347-73014366 None:intergenic 35.0%
GTTAGGAAATGTCCAAAATC+TGG - chr1.3:73014001-73014020 MS.gene91304:intron 35.0%
TAAGTTGCGTAGAAAATCGA+AGG - chr1.3:73014159-73014178 MS.gene91304:CDS 35.0%
TAGTGTTTCCATTACAACCA+AGG + chr1.3:73013493-73013512 None:intergenic 35.0%
TATGCTCCAATTGCTTACAA+TGG - chr1.3:73014855-73014874 MS.gene91304:CDS 35.0%
TGAAGGAAAATAAGATGGCA+TGG + chr1.3:73013522-73013541 None:intergenic 35.0%
TGTTCCCAAATCACATGAAT+GGG + chr1.3:73013555-73013574 None:intergenic 35.0%
TTGTTCCCAAATCACATGAA+TGG + chr1.3:73013556-73013575 None:intergenic 35.0%
! AATGATGATGACTTCAGAAG+AGG - chr1.3:73013739-73013758 MS.gene91304:intron 35.0%
! AGCTCCTAAATCTTTTTGCA+GGG + chr1.3:73013787-73013806 None:intergenic 35.0%
! CCCAATTGATTTCTGAAGAA+TGG - chr1.3:73013414-73013433 MS.gene91304:CDS 35.0%
! GGTTAACTCTAATCCTTTTC+TGG - chr1.3:73014084-73014103 MS.gene91304:intron 35.0%
! TTCGATTTTCTACGCAACTT+AGG + chr1.3:73014160-73014179 None:intergenic 35.0%
!!! AATCCTTTTCTGGAGCAAAA+TGG - chr1.3:73014094-73014113 MS.gene91304:intron 35.0%
!!! CTTGTCCATGTTTTTTTCCA+TGG - chr1.3:73013586-73013605 MS.gene91304:intron 35.0%
!!! TTTTGAGCTCTGAAGATATG+TGG - chr1.3:73014829-73014848 MS.gene91304:CDS 35.0%
AAAACAATTTGCGGGATGAG+AGG - chr1.3:73013708-73013727 MS.gene91304:intron 40.0%
AAACAATTTGCGGGATGAGA+GGG - chr1.3:73013709-73013728 MS.gene91304:intron 40.0%
AACCTGTGGAAAACAGTTGT+TGG + chr1.3:73014068-73014087 None:intergenic 40.0%
AAGATTTAGGAGCTCACTAG+AGG - chr1.3:73013793-73013812 MS.gene91304:CDS 40.0%
ATGCATTAATCATGAAGGGC+CGG - chr1.3:73013670-73013689 MS.gene91304:intron 40.0%
CAAGAGTAAGTTCCCTTTGA+AGG - chr1.3:73014221-73014240 MS.gene91304:CDS 40.0%
GAAGAATGGGATTCTCTTAG+TGG - chr1.3:73013428-73013447 MS.gene91304:CDS 40.0%
GGAACCCATTCATGTGATTT+GGG - chr1.3:73013548-73013567 MS.gene91304:intron 40.0%
GGATATTAGTACCATGCTTG+AGG - chr1.3:73014672-73014691 MS.gene91304:CDS 40.0%
TCTATGAGCCACAATGAAGA+GGG - chr1.3:73014025-73014044 MS.gene91304:intron 40.0%
TCTTGTCCCAAATGGAACTA+AGG - chr1.3:73014553-73014572 MS.gene91304:CDS 40.0%
TGGAACCCATTCATGTGATT+TGG - chr1.3:73013547-73013566 MS.gene91304:intron 40.0%
TTCTATGAGCCACAATGAAG+AGG - chr1.3:73014024-73014043 MS.gene91304:intron 40.0%
TTGCAAACTCTTGTCCCAAA+TGG - chr1.3:73014545-73014564 MS.gene91304:CDS 40.0%
! GAATGGGTTCCATTACTTGA+AGG + chr1.3:73013539-73013558 None:intergenic 40.0%
! GAGCTCCTAAATCTTTTTGC+AGG + chr1.3:73013788-73013807 None:intergenic 40.0%
! TGGCTCATAGAACCAGATTT+TGG + chr1.3:73014016-73014035 None:intergenic 40.0%
! TTTCCTCATGTTTTGTGCAG+AGG - chr1.3:73014489-73014508 MS.gene91304:intron 40.0%
!! TAGGTGCTTCAGGTTCTTTT+AGG + chr1.3:73014141-73014160 None:intergenic 40.0%
AGAAAATCGAAGGCAGGAAG+TGG - chr1.3:73014169-73014188 MS.gene91304:CDS 45.0%
GCTCAGTTCCTTGGTTGTAA+TGG - chr1.3:73013482-73013501 MS.gene91304:CDS 45.0%
TAGTTGGAGAAGAGAAGCTG+AGG + chr1.3:73014899-73014918 None:intergenic 45.0%
TCTCCTCTGCACAAAACATG+AGG + chr1.3:73014495-73014514 None:intergenic 45.0%
TGCATTAATCATGAAGGGCC+GGG - chr1.3:73013671-73013690 MS.gene91304:intron 45.0%
TTGCGTAGAAAATCGAAGGC+AGG - chr1.3:73014163-73014182 MS.gene91304:CDS 45.0%
! CCTCCATTTTGCTCCAGAAA+AGG + chr1.3:73014100-73014119 None:intergenic 45.0%
! CTCCAACAACTGTTTTCCAC+AGG - chr1.3:73014063-73014082 MS.gene91304:intron 45.0%
!!! CCTTTTCTGGAGCAAAATGG+AGG - chr1.3:73014097-73014116 MS.gene91304:intron 45.0%
ACAATGAAGAGGGCCTAACG+TGG - chr1.3:73014035-73014054 MS.gene91304:intron 50.0%
ACGTTAGGCCCTCTTCATTG+TGG + chr1.3:73014036-73014055 None:intergenic 50.0%
AGCCATGAAGTCAGCTTCCT+CGG + chr1.3:73013465-73013484 None:intergenic 50.0%
ATGCTTTGTGCATCAGTGGC+AGG + chr1.3:73014196-73014215 None:intergenic 50.0%
CTACGCAACTTAGGTGCTTC+AGG + chr1.3:73014151-73014170 None:intergenic 50.0%
GACTTCATGGCTCAGTTCCT+TGG - chr1.3:73013473-73013492 MS.gene91304:CDS 50.0%
TTGGACAGCTTCCTCAAGCA+TGG + chr1.3:73014686-73014705 None:intergenic 50.0%
TGTTGGAGCCATGCCACGTT+AGG + chr1.3:73014051-73014070 None:intergenic 55.0%
! AGCCGAGGAAGCTGACTTCA+TGG - chr1.3:73013460-73013479 MS.gene91304:CDS 55.0%
! TAGTGGACAGTACACAGCCG+AGG - chr1.3:73013445-73013464 MS.gene91304:CDS 55.0%
GAAGAGGGCCTAACGTGGCA+TGG - chr1.3:73014040-73014059 MS.gene91304:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 73013404 73014932 73013404 ID=MS.gene91304
chr1.3 mRNA 73013404 73014932 73013404 ID=MS.gene91304.t1;Parent=MS.gene91304
chr1.3 exon 73014522 73014932 73014522 ID=MS.gene91304.t1.exon1;Parent=MS.gene91304.t1
chr1.3 CDS 73014522 73014932 73014522 ID=cds.MS.gene91304.t1;Parent=MS.gene91304.t1
chr1.3 exon 73014111 73014356 73014111 ID=MS.gene91304.t1.exon2;Parent=MS.gene91304.t1
chr1.3 CDS 73014111 73014356 73014111 ID=cds.MS.gene91304.t1;Parent=MS.gene91304.t1
chr1.3 exon 73013762 73013827 73013762 ID=MS.gene91304.t1.exon3;Parent=MS.gene91304.t1
chr1.3 CDS 73013762 73013827 73013762 ID=cds.MS.gene91304.t1;Parent=MS.gene91304.t1
chr1.3 exon 73013601 73013666 73013601 ID=MS.gene91304.t1.exon4;Parent=MS.gene91304.t1
chr1.3 CDS 73013601 73013666 73013601 ID=cds.MS.gene91304.t1;Parent=MS.gene91304.t1
chr1.3 exon 73013404 73013508 73013404 ID=MS.gene91304.t1.exon5;Parent=MS.gene91304.t1
chr1.3 CDS 73013404 73013508 73013404 ID=cds.MS.gene91304.t1;Parent=MS.gene91304.t1
Gene Sequence

>MS.gene91304

ATGGAATCTGCCCAATTGATTTCTGAAGAATGGGATTCTCTTAGTGGACAGTACACAGCCGAGGAAGCTGACTTCATGGCTCAGTTCCTTGGTTGTAATGGAAACACTAGTTTTGCCATGCCATCTTATTTTCCTTCAAGTAATGGAACCCATTCATGTGATTTGGGAACAAATATTGATTCCTTGTCCATGTTTTTTTCCATGGAAGATGCCAAATTTAGTCCACAATATTTGGATCATAACTTAACCAAAAAGATAAACTATGAATGCATTAATCATGAAGGGCCGGGTTTAGTTCTTGTTGAAAACAATTTGCGGGATGAGAGGGAGCATGAAATGATGATGACTTCAGAAGAGGATAAAAGCAAAAACTTGGGAAACCCTGCAAAAAGATTTAGGAGCTCACTAGAGGTATAATAATAGTTAAGGTATTTATTATTGACAAAAAATAGTTGATGTTAAATTAAACTTTGAAAACGACAAATAAATAGAAATAATTTTTTCTACAAAAAAGCAACAAGTTTAGAAGCTACTACGTTGATTGTTTGAGATTTTAATCATGATTTTACTATGTAGGTTTCAGAAAATATAAGGAATGTTAGGAAATGTCCAAAATCTGGTTCTATGAGCCACAATGAAGAGGGCCTAACGTGGCATGGCTCCAACAACTGTTTTCCACAGGTTAACTCTAATCCTTTTCTGGAGCAAAATGGAGGAAAACCTTCAATTCTAAGCCTAAAAGAACCTGAAGCACCTAAGTTGCGTAGAAAATCGAAGGCAGGAAGTGGTCCTGCCACTGATGCACAAAGCATTTATGCAAGAGTAAGTTCCCTTTGAAGGACATTTCTTTAGTGCATATTTGGATTCAAGTGAGTTATCTGAATCACAATATGTTACCATGATTTTGGTAAAAGTTACGATTTAGATTTCAATCATCGTGCCATCGTGATTCATCAAATTCACCGTAATTCTAAATATGCACTTAATAAAATCATGATGAAGAATAGTACATGCCAATTAAACTACTGACTACTGTATTGGTAACATTTTCTTGCTTTTAGTTAAACGTCTCTCATTATAGGTTTTTTCCTCATGTTTTGTGCAGAGGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCTTGCAAACTCTTGTCCCAAATGGAACTAAGGTAGATTTCTTAAGGACAACAATATTGAACTATTACTCAATAATGGGTTAAGATGGTCAAATTCTCAAACTTTTTTTTTTGTTTGTGAATTGTAGGTGGATATTAGTACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTTCAAATTAAGGTAACAATTTGAGAAACTTCCATTTTTCAATTTCTTGTATGCAAAACATAAATATTAACTCATTGTTTATTTATTTATTGGATATGAAACAGCTTTTGAGCTCTGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATAAATATTGGATTAGACCTCAGCTTCTCTTCTCCAACTAAATTAGGAAGATGA
Protein sequence

>MS.gene91304.t1

MESAQLISEEWDSLSGQYTAEEADFMAQFLGCNGNTSFAMPSYFPSSNGTHSCDLGTNIDSLSMFFSMEDAKFSPQYLDHNLTKKINYECINHEGPGLVLVENNLRDEREHEMMMTSEEDKSKNLGNPAKRFRSSLEVSENIRNVRKCPKSGSMSHNEEGLTWHGSNNCFPQVNSNPFLEQNGGKPSILSLKEPEAPKLRRKSKAGSGPATDAQSIYARRRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSEDMWMYAPIAYNGINIGLDLSFSSPTKLGR