AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91305

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91305.t1 MTR_1g106470 79.276 304 34 3 1 292 1 287 1.11e-161 451
MS.gene91305.t1 MTR_1g106470 75.591 254 33 3 1 242 1 237 8.59e-123 351
MS.gene91305.t1 MTR_5g005110 45.482 332 120 9 1 290 1 313 4.06e-74 230
MS.gene91305.t1 MTR_1g106460 43.636 330 143 8 1 290 1 327 4.71e-63 202
MS.gene91305.t1 MTR_1g106480 62.424 165 24 3 158 292 1 157 3.75e-56 178
MS.gene91305.t1 MTR_3g103030 51.149 174 72 4 123 285 142 313 5.42e-46 157
MS.gene91305.t1 MTR_5g005110 39.085 284 108 9 1 240 1 263 8.98e-41 142
MS.gene91305.t1 MTR_1g018090 84.416 77 12 0 200 276 273 349 1.86e-39 142
MS.gene91305.t1 MTR_1g106490 59.459 111 31 4 23 126 24 127 1.39e-29 109
MS.gene91305.t1 MTR_1g106460 36.201 279 135 8 1 239 1 276 2.85e-29 112
MS.gene91305.t1 MTR_5g079500 49.451 91 45 1 179 269 197 286 1.44e-23 98.2
MS.gene91305.t1 MTR_8g093500 66.071 56 19 0 210 265 123 178 2.26e-18 83.2
MS.gene91305.t1 MTR_3g101810 62.963 54 20 0 210 263 180 233 1.22e-16 78.6
MS.gene91305.t1 MTR_4g131160 57.576 66 28 0 199 264 194 259 1.53e-16 79.3
MS.gene91305.t1 MTR_4g131160 57.576 66 28 0 199 264 197 262 1.66e-16 79.3
MS.gene91305.t1 MTR_7g069590 56.364 55 24 0 208 262 33 87 5.67e-16 73.9
MS.gene91305.t1 MTR_1g080890 52.055 73 35 0 192 264 184 256 1.86e-15 75.9
MS.gene91305.t1 MTR_1g018090 77.273 44 10 0 200 243 273 316 3.87e-15 74.7
MS.gene91305.t1 MTR_7g053410 39.316 117 59 3 158 264 267 381 3.11e-13 70.1
MS.gene91305.t1 MTR_7g053410 39.316 117 59 3 158 264 267 381 3.17e-13 70.1
MS.gene91305.t1 MTR_4g033295 42.857 98 55 1 170 266 87 184 6.37e-13 66.6
MS.gene91305.t1 MTR_4g033295 42.268 97 55 1 170 265 87 183 9.78e-13 65.9
MS.gene91305.t1 MTR_1g084980 47.368 57 30 0 208 264 469 525 1.94e-12 67.8
MS.gene91305.t1 MTR_1g019240 36.620 71 45 0 208 278 92 162 7.07e-12 64.7
MS.gene91305.t1 MTR_3g449770 40.278 72 38 1 199 270 307 373 3.13e-11 63.9
MS.gene91305.t1 MTR_8g012290 40.449 89 43 2 202 289 292 371 4.73e-11 63.5
MS.gene91305.t1 MTR_8g012290 40.449 89 43 2 202 289 292 371 4.87e-11 63.5
MS.gene91305.t1 MTR_5g017040 37.037 81 51 0 210 290 114 194 5.33e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91305.t1 AT2G14760 39.697 330 143 12 10 291 6 327 2.54e-52 174
MS.gene91305.t1 AT2G14760 38.192 343 143 13 10 291 6 340 1.43e-48 165
MS.gene91305.t1 AT4G33880 75.000 104 25 1 181 283 245 348 2.42e-46 159
MS.gene91305.t1 AT5G43175 70.103 97 29 0 187 283 118 214 4.19e-43 147
MS.gene91305.t1 AT1G27740 78.571 84 18 0 200 283 166 249 1.34e-42 147
MS.gene91305.t1 AT5G37800 53.409 88 40 1 182 269 183 269 3.51e-23 97.1
MS.gene91305.t1 AT1G66470 60.000 70 27 1 200 269 195 263 1.00e-21 92.8
MS.gene91305.t1 AT2G24260 52.632 76 36 0 200 275 34 109 9.54e-18 81.3
MS.gene91305.t1 AT4G30980 57.143 70 30 0 195 264 124 193 1.56e-17 81.6
MS.gene91305.t1 AT4G30980 57.143 70 30 0 195 264 172 241 2.10e-17 81.6
MS.gene91305.t1 AT2G24260 60.000 65 26 0 200 264 137 201 3.21e-17 81.3
MS.gene91305.t1 AT5G01305 53.226 62 29 0 199 260 35 96 9.47e-17 76.6
MS.gene91305.t1 AT3G21330 58.929 56 23 0 208 263 276 331 1.36e-16 79.3
MS.gene91305.t1 AT5G58010 55.385 65 29 0 200 264 98 162 1.39e-15 75.9
MS.gene91305.t1 AT4G00120 46.970 66 34 1 210 275 121 185 2.15e-15 73.6
MS.gene91305.t1 AT1G09530 40.909 66 39 0 208 273 344 409 4.57e-12 66.6
MS.gene91305.t1 AT1G09530 40.909 66 39 0 208 273 344 409 4.57e-12 66.6
MS.gene91305.t1 AT1G09530 40.909 66 39 0 208 273 344 409 4.57e-12 66.6
MS.gene91305.t1 AT1G09530 40.909 66 39 0 208 273 344 409 4.57e-12 66.6
MS.gene91305.t1 AT1G09530 40.909 66 39 0 208 273 344 409 4.57e-12 66.6
MS.gene91305.t1 AT1G09530 40.909 66 39 0 208 273 344 409 4.57e-12 66.6
MS.gene91305.t1 AT3G23690 40.625 96 54 2 170 264 162 255 1.05e-11 65.1
MS.gene91305.t1 AT5G48560 46.053 76 40 1 190 264 290 365 1.05e-11 65.5
MS.gene91305.t1 AT5G48560 46.053 76 40 1 190 264 290 365 1.05e-11 65.5
MS.gene91305.t1 AT1G18400 50.000 64 31 1 202 264 146 209 1.06e-11 63.9
MS.gene91305.t1 AT4G09180 52.941 68 31 1 200 266 183 250 1.12e-11 64.3
MS.gene91305.t1 AT5G50915 43.529 85 43 3 202 285 137 217 1.48e-11 63.9
MS.gene91305.t1 AT5G50915 43.529 85 43 3 202 285 137 217 1.48e-11 63.9
MS.gene91305.t1 AT4G00050 48.077 52 27 0 217 268 121 172 2.19e-11 63.5
MS.gene91305.t1 AT5G50915 43.529 85 43 3 202 285 137 217 2.24e-11 63.5
MS.gene91305.t1 AT5G50915 43.529 85 43 3 202 285 137 217 2.24e-11 63.5
MS.gene91305.t1 AT2G20180 47.368 57 30 0 208 264 214 270 6.44e-11 62.8
MS.gene91305.t1 AT2G20180 47.368 57 30 0 208 264 214 270 6.44e-11 62.8
MS.gene91305.t1 AT2G20180 47.368 57 30 0 208 264 214 270 6.44e-11 62.8
MS.gene91305.t1 AT2G20180 47.368 57 30 0 208 264 285 341 7.66e-11 62.8
MS.gene91305.t1 AT2G20180 47.368 57 30 0 208 264 285 341 7.66e-11 62.8
MS.gene91305.t1 AT2G20180 47.368 57 30 0 208 264 285 341 7.66e-11 62.8
MS.gene91305.t1 AT2G20180 47.368 57 30 0 208 264 285 341 7.66e-11 62.8

Find 50 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTTAGTCCTCAATATT+TGG 0.162834 1.3:-73008430 MS.gene91305:CDS
TTTCTCATAGAAGCAGATTT+TGG 0.194259 1.3:+73008109 None:intergenic
CAAATATTGAGGACTAAATT+TGG 0.216033 1.3:+73008431 None:intergenic
GCTTACAATGGAATGAATAT+TGG 0.254169 1.3:-73007195 MS.gene91305:CDS
CCCATTCTTCAGAAATCAAT+TGG 0.299308 1.3:+73008706 None:intergenic
TTCATGAATCAGTTCCTTAC+TGG 0.321133 1.3:-73008645 MS.gene91305:intron
TTCATTCCATTGTAAGCAAT+TGG 0.326950 1.3:+73007201 None:intergenic
CCCAATTGATTTCTGAAGAA+TGG 0.332468 1.3:-73008707 MS.gene91305:CDS
CAGAAAACATTAGGAATGTT+AGG 0.347576 1.3:-73008138 MS.gene91305:CDS
GAAGCTACCTTTGTTCCATT+TGG 0.350337 1.3:+73007512 None:intergenic
AATGATAGCATTGATCATAA+AGG 0.357619 1.3:-73008381 MS.gene91305:CDS
AAGCTACCTTTGTTCCATTT+GGG 0.369150 1.3:+73007513 None:intergenic
CCAATTGATTTCTGAAGAAT+GGG 0.373736 1.3:-73008706 MS.gene91305:CDS
ATGTTTAGAGCCAGTGAAAC+TGG 0.383865 1.3:-73008355 MS.gene91305:CDS
CTACCTAAGTTGGGTGCCTC+AGG 0.386763 1.3:+73007992 None:intergenic
GAAGAATGGGATTCTCTTAG+TGG 0.394320 1.3:-73008693 MS.gene91305:CDS
ATGATAGCATTGATCATAAA+GGG 0.425204 1.3:-73008380 MS.gene91305:CDS
GGTAGAAAATCAAGAGCAAC+AGG 0.428540 1.3:-73007974 MS.gene91305:CDS
CTTCTATCCTCTTCTGAACA+AGG 0.432681 1.3:+73008294 None:intergenic
TGGAACCTACTCATGTGATT+TGG 0.438360 1.3:-73008499 MS.gene91305:CDS
TGCAGGTCTCAGAAAACATT+AGG 0.448557 1.3:-73008147 MS.gene91305:intron
CCTTTGTTCCATTTGGGACA+AGG 0.453226 1.3:+73007519 None:intergenic
TTGCAAACCCTTGTCCCAAA+TGG 0.465028 1.3:-73007527 MS.gene91305:CDS
ACTACTTGTGGTGGTAGAAA+AGG 0.472559 1.3:+73008521 None:intergenic
CTTTGTTCCATTTGGGACAA+GGG 0.489847 1.3:+73007520 None:intergenic
ATGTTATCATCCAAATATTG+AGG 0.490926 1.3:+73008420 None:intergenic
GAACCTGAGGCACCCAACTT+AGG 0.497691 1.3:-73007995 MS.gene91305:CDS
AAGATTTAGGAGCTCAATAG+AGG 0.507018 1.3:-73008247 MS.gene91305:intron
GCAGCAAGAACCAGTTTCAC+TGG 0.514887 1.3:+73008345 None:intergenic
TTCTGAACCTTGTTCAGAAG+AGG 0.517904 1.3:-73008301 MS.gene91305:CDS
TGTTGCCAAATCACATGAGT+AGG 0.518267 1.3:+73008494 None:intergenic
ATGCTCTGTGCATCAGTGGC+AGG 0.521454 1.3:+73007947 None:intergenic
TCACATGTTGACTCAATTGG+AGG 0.523673 1.3:-73008043 MS.gene91305:CDS
TGCTAACAATGAAATGATGA+TGG 0.528083 1.3:-73008325 MS.gene91305:CDS
TCTTCAGAAATCAATTGGGC+AGG 0.532125 1.3:+73008711 None:intergenic
CCATTCTTCAGAAATCAATT+GGG 0.537373 1.3:+73008707 None:intergenic
TTCTGAGCTCAGAAGATATG+TGG 0.585124 1.3:-73007233 MS.gene91305:CDS
TATGCTCCAATTGCTTACAA+TGG 0.606083 1.3:-73007207 MS.gene91305:CDS
GAAGAGGACTTAATGTGGCA+TGG 0.606487 1.3:-73008082 MS.gene91305:CDS
TTCTATGAGAAACAATGAAG+AGG 0.610178 1.3:-73008098 MS.gene91305:CDS
AGATATTAGCACTATGCTTG+AGG 0.620150 1.3:-73007407 MS.gene91305:CDS
CCTTGTCCCAAATGGAACAA+AGG 0.623499 1.3:-73007519 MS.gene91305:intron
TCTGAGCCTAAAAGAACCTG+AGG 0.648501 1.3:-73008008 MS.gene91305:CDS
ACAATGAAGAGGACTTAATG+TGG 0.656728 1.3:-73008087 MS.gene91305:CDS
TGAGTAGGTTCCACTACTTG+TGG 0.679682 1.3:+73008509 None:intergenic
TAGTGGACAGTACACAGCTG+AGG 0.680277 1.3:-73008676 MS.gene91305:CDS
GTAGGTTCCACTACTTGTGG+TGG 0.681977 1.3:+73008512 None:intergenic
ATAAATGCTCTGTGCATCAG+TGG 0.693217 1.3:+73007943 None:intergenic
TAGTTGTAGAAGAAAAGCTG+AGG 0.699528 1.3:+73007166 None:intergenic
AGAAAATCAAGAGCAACAGG+TGG 0.715777 1.3:-73007971 MS.gene91305:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAATTGATATCATATT+TGG + chr1.3:73008570-73008589 None:intergenic 15.0%
!!! TCACTATATTAAATTTTGTT+TGG - chr1.3:73008030-73008049 MS.gene91305:CDS 15.0%
!! AGTTCAATTTCCATTAATTA+AGG + chr1.3:73008391-73008410 None:intergenic 20.0%
!! ATGGAAATTGAACTAAAAAT+TGG - chr1.3:73008397-73008416 MS.gene91305:CDS 20.0%
!! ATTGAACTAAAAATTGGTTA+AGG - chr1.3:73008403-73008422 MS.gene91305:CDS 20.0%
!! ATTTAATATAGTGACAACAA+TGG + chr1.3:73008024-73008043 None:intergenic 20.0%
!! TTCAAATAAGTGAATACAAA+AGG - chr1.3:73008221-73008240 MS.gene91305:intron 20.0%
!!! AATTTTTCATTGTGAATTGT+AGG - chr1.3:73008447-73008466 MS.gene91305:CDS 20.0%
!!! ACTATTTTCAAATAAACTAC+TGG - chr1.3:73008119-73008138 MS.gene91305:CDS 20.0%
!!! GGTAATAAAAATACAAGTTT+TGG - chr1.3:73007254-73007273 MS.gene91305:intron 20.0%
!!! TTGTATTTTTATTACCAGTA+AGG + chr1.3:73007250-73007269 None:intergenic 20.0%
! AACATGTGAAAAACAGTTAT+TGG + chr1.3:73007824-73007843 None:intergenic 25.0%
! AATTCATCATGATTCTATTG+CGG + chr1.3:73007991-73008010 None:intergenic 25.0%
! ATCTTCCAAACAAAAAAACA+TGG + chr1.3:73007426-73007445 None:intergenic 25.0%
! ATGTTATCATCCAAATATTG+AGG + chr1.3:73007461-73007480 None:intergenic 25.0%
! ATTTGGATATCGAATAATGA+AGG + chr1.3:73008553-73008572 None:intergenic 25.0%
! CAAATATTGAGGACTAAATT+TGG + chr1.3:73007450-73007469 None:intergenic 25.0%
! CAAATTTAGTCCTCAATATT+TGG - chr1.3:73007448-73007467 MS.gene91305:intron 25.0%
!! TGATCATAATTTTACTATGC+AGG - chr1.3:73007714-73007733 MS.gene91305:intron 25.0%
!!! AATGATAGCATTGATCATAA+AGG - chr1.3:73007497-73007516 MS.gene91305:intron 25.0%
!!! ATGATAGCATTGATCATAAA+GGG - chr1.3:73007498-73007517 MS.gene91305:intron 25.0%
AAACACATAAAATCAGCATG+AGG + chr1.3:73007296-73007315 None:intergenic 30.0%
AAGGTAGCTTCCTTAATTAA+TGG - chr1.3:73008378-73008397 MS.gene91305:CDS 30.0%
CAGAAAACATTAGGAATGTT+AGG - chr1.3:73007740-73007759 MS.gene91305:intron 30.0%
CCATTCTTCAGAAATCAATT+GGG + chr1.3:73007174-73007193 None:intergenic 30.0%
CTAAATAAGTCTCTCATGAA+AGG - chr1.3:73008270-73008289 MS.gene91305:CDS 30.0%
GCTTACAATGGAATGAATAT+TGG - chr1.3:73008683-73008702 MS.gene91305:CDS 30.0%
TGCTAACAATGAAATGATGA+TGG - chr1.3:73007553-73007572 MS.gene91305:CDS 30.0%
TTCATTCCATTGTAAGCAAT+TGG + chr1.3:73008680-73008699 None:intergenic 30.0%
TTCTATGAGAAACAATGAAG+AGG - chr1.3:73007780-73007799 MS.gene91305:intron 30.0%
! ATTTTATGTGTTTCTCCCAA+GGG - chr1.3:73007303-73007322 MS.gene91305:intron 30.0%
! CCAATTGATTTCTGAAGAAT+GGG - chr1.3:73007172-73007191 MS.gene91305:CDS 30.0%
! CTTGATTTTCTACCTAAGTT+GGG + chr1.3:73007898-73007917 None:intergenic 30.0%
! GTTTTTGCAGCATCAAATTA+AGG - chr1.3:73008513-73008532 MS.gene91305:CDS 30.0%
! TCTTGATTTTCTACCTAAGT+TGG + chr1.3:73007899-73007918 None:intergenic 30.0%
! TTTCTCATAGAAGCAGATTT+TGG + chr1.3:73007772-73007791 None:intergenic 30.0%
!!! ACTGTCCATGTTTTTTTGTT+TGG - chr1.3:73007418-73007437 MS.gene91305:intron 30.0%
!!! TTTTCACATGTTGACTCAAT+TGG - chr1.3:73007832-73007851 MS.gene91305:intron 30.0%
AAGATTTAGGAGCTCAATAG+AGG - chr1.3:73007631-73007650 MS.gene91305:intron 35.0%
AAGCTACCTTTGTTCCATTT+GGG + chr1.3:73008368-73008387 None:intergenic 35.0%
ACAATGAAGAGGACTTAATG+TGG - chr1.3:73007791-73007810 MS.gene91305:intron 35.0%
AGAACCCTGCAAAAAGATTT+AGG - chr1.3:73007618-73007637 MS.gene91305:intron 35.0%
AGAGGATAGAAGCAAAAACA+TGG - chr1.3:73007595-73007614 MS.gene91305:intron 35.0%
AGATATTAGCACTATGCTTG+AGG - chr1.3:73008471-73008490 MS.gene91305:CDS 35.0%
AGTGTCACAAGTGTTTATGT+CGG - chr1.3:73008190-73008209 MS.gene91305:intron 35.0%
CCCATTCTTCAGAAATCAAT+TGG + chr1.3:73007175-73007194 None:intergenic 35.0%
GCTGCAAAAACTTCACATAT+TGG + chr1.3:73008504-73008523 None:intergenic 35.0%
TAGTTGTAGAAGAAAAGCTG+AGG + chr1.3:73008715-73008734 None:intergenic 35.0%
TATGCTCCAATTGCTTACAA+TGG - chr1.3:73008671-73008690 MS.gene91305:CDS 35.0%
TTCATGAATCAGTTCCTTAC+TGG - chr1.3:73007233-73007252 MS.gene91305:CDS 35.0%
! AGCTCCTAAATCTTTTTGCA+GGG + chr1.3:73007625-73007644 None:intergenic 35.0%
! CCCAATTGATTTCTGAAGAA+TGG - chr1.3:73007171-73007190 MS.gene91305:CDS 35.0%
! GATTTTATGTGTTTCTCCCA+AGG - chr1.3:73007302-73007321 MS.gene91305:intron 35.0%
ACTACTTGTGGTGGTAGAAA+AGG + chr1.3:73007360-73007379 None:intergenic 40.0%
AGAAAATCAAGAGCAACAGG+TGG - chr1.3:73007907-73007926 MS.gene91305:intron 40.0%
ATAAATGCTCTGTGCATCAG+TGG + chr1.3:73007938-73007957 None:intergenic 40.0%
CTTCTATCCTCTTCTGAACA+AGG + chr1.3:73007587-73007606 None:intergenic 40.0%
GAAGAATGGGATTCTCTTAG+TGG - chr1.3:73007185-73007204 MS.gene91305:CDS 40.0%
GAAGCTACCTTTGTTCCATT+TGG + chr1.3:73008369-73008388 None:intergenic 40.0%
GGTAGAAAATCAAGAGCAAC+AGG - chr1.3:73007904-73007923 MS.gene91305:intron 40.0%
TCAGCATGAGGAAAGTAAGA+TGG + chr1.3:73007284-73007303 None:intergenic 40.0%
TCTTCAGAAATCAATTGGGC+AGG + chr1.3:73007170-73007189 None:intergenic 40.0%
TGCAGGTCTCAGAAAACATT+AGG - chr1.3:73007731-73007750 MS.gene91305:intron 40.0%
TGGAACCTACTCATGTGATT+TGG - chr1.3:73007379-73007398 MS.gene91305:CDS 40.0%
TGTTGCCAAATCACATGAGT+AGG + chr1.3:73007387-73007406 None:intergenic 40.0%
TTCTGAACCTTGTTCAGAAG+AGG - chr1.3:73007577-73007596 MS.gene91305:intron 40.0%
TTCTGAGCTCAGAAGATATG+TGG - chr1.3:73008645-73008664 MS.gene91305:intron 40.0%
TTGCGGAAATGTCACTCAAA+TGG + chr1.3:73007974-73007993 None:intergenic 40.0%
! AGTACTTGTGTTACTCCCTT+GGG + chr1.3:73007321-73007340 None:intergenic 40.0%
! ATGTTTAGAGCCAGTGAAAC+TGG - chr1.3:73007523-73007542 MS.gene91305:CDS 40.0%
! CTTTGTTCCATTTGGGACAA+GGG + chr1.3:73008361-73008380 None:intergenic 40.0%
! GAGCTCCTAAATCTTTTTGC+AGG + chr1.3:73007626-73007645 None:intergenic 40.0%
! TTTTCTACCACCACAAGTAG+TGG - chr1.3:73007359-73007378 MS.gene91305:intron 40.0%
!! TCACATGTTGACTCAATTGG+AGG - chr1.3:73007835-73007854 MS.gene91305:intron 40.0%
CCTTGTCCCAAATGGAACAA+AGG - chr1.3:73008359-73008378 MS.gene91305:CDS 45.0%
GAAGAGGACTTAATGTGGCA+TGG - chr1.3:73007796-73007815 MS.gene91305:intron 45.0%
TCTGAGCCTAAAAGAACCTG+AGG - chr1.3:73007870-73007889 MS.gene91305:intron 45.0%
TGAGTAGGTTCCACTACTTG+TGG + chr1.3:73007372-73007391 None:intergenic 45.0%
TTGCAAACCCTTGTCCCAAA+TGG - chr1.3:73008351-73008370 MS.gene91305:CDS 45.0%
! CAGTACTTGTGTTACTCCCT+TGG + chr1.3:73007322-73007341 None:intergenic 45.0%
! CCTTTGTTCCATTTGGGACA+AGG + chr1.3:73008362-73008381 None:intergenic 45.0%
!! GATTAATTTATTTATTTATT+TGG - chr1.3:73008613-73008632 MS.gene91305:intron 5.0%
GCAGCAAGAACCAGTTTCAC+TGG + chr1.3:73007536-73007555 None:intergenic 50.0%
GTAGGTTCCACTACTTGTGG+TGG + chr1.3:73007369-73007388 None:intergenic 50.0%
! TAGTGGACAGTACACAGCTG+AGG - chr1.3:73007202-73007221 MS.gene91305:CDS 50.0%
! TGGGTGCCTCAGGTTCTTTT+AGG + chr1.3:73007879-73007898 None:intergenic 50.0%
ATGCTCTGTGCATCAGTGGC+AGG + chr1.3:73007934-73007953 None:intergenic 55.0%
! CTACCTAAGTTGGGTGCCTC+AGG + chr1.3:73007889-73007908 None:intergenic 55.0%
! GAACCTGAGGCACCCAACTT+AGG - chr1.3:73007883-73007902 MS.gene91305:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 73007161 73008739 73007161 ID=MS.gene91305
chr1.3 mRNA 73007161 73008739 73007161 ID=MS.gene91305.t1;Parent=MS.gene91305
chr1.3 exon 73008646 73008739 73008646 ID=MS.gene91305.t1.exon1;Parent=MS.gene91305.t1
chr1.3 CDS 73008646 73008739 73008646 ID=cds.MS.gene91305.t1;Parent=MS.gene91305.t1
chr1.3 exon 73008248 73008576 73008248 ID=MS.gene91305.t1.exon2;Parent=MS.gene91305.t1
chr1.3 CDS 73008248 73008576 73008248 ID=cds.MS.gene91305.t1;Parent=MS.gene91305.t1
chr1.3 exon 73007937 73008164 73007937 ID=MS.gene91305.t1.exon3;Parent=MS.gene91305.t1
chr1.3 CDS 73007937 73008164 73007937 ID=cds.MS.gene91305.t1;Parent=MS.gene91305.t1
chr1.3 exon 73007520 73007585 73007520 ID=MS.gene91305.t1.exon4;Parent=MS.gene91305.t1
chr1.3 CDS 73007520 73007585 73007520 ID=cds.MS.gene91305.t1;Parent=MS.gene91305.t1
chr1.3 exon 73007366 73007431 73007366 ID=MS.gene91305.t1.exon5;Parent=MS.gene91305.t1
chr1.3 CDS 73007366 73007431 73007366 ID=cds.MS.gene91305.t1;Parent=MS.gene91305.t1
chr1.3 exon 73007161 73007256 73007161 ID=MS.gene91305.t1.exon6;Parent=MS.gene91305.t1
chr1.3 CDS 73007161 73007256 73007161 ID=cds.MS.gene91305.t1;Parent=MS.gene91305.t1
Gene Sequence

>MS.gene91305

ATGGAACCTGCCCAATTGATTTCTGAAGAATGGGATTCTCTTAGTGGACAGTACACAGCTGAGGAAGCTGACTTCATGAATCAGTTCCTTACTGGTAATAAAAATACAAGTTTTGGCATGCCATCTTACTTTCCTCATGCTGATTTTATGTGTTTCTCCCAAGGGAGTAACACAAGTACTGATAATAGTGCTAATACCTTTTCTACCACCACAAGTAGTGGAACCTACTCATGTGATTTGGCAACAAACTTTGATTCACTGTCCATGTTTTTTTGTTTGGAAGATGCCAAATTTAGTCCTCAATATTTGGATGATAACATAAGTAAACACATAAATAATGATAGCATTGATCATAAAGGGTCATGTTTAGAGCCAGTGAAACTGGTTCTTGCTGCTAACAATGAAATGATGATGGTTTCTGAACCTTGTTCAGAAGAGGATAGAAGCAAAAACATGGAGAACCCTGCAAAAAGATTTAGGAGCTCAATAGAGGTACAATAATATAATAGTATGAAGTTTAAGTTATGTTGTTTATTTGTGTGAGATTAGATTGTGATCATAATTTTACTATGCAGGTCTCAGAAAACATTAGGAATGTTAGGAAGTGTCCAAAATCTGCTTCTATGAGAAACAATGAAGAGGACTTAATGTGGCATGGCTCCAATAACTGTTTTTCACATGTTGACTCAATTGGAGGAACATCTTCAAATCTGAGCCTAAAAGAACCTGAGGCACCCAACTTAGGTAGAAAATCAAGAGCAACAGGTGGTCCTGCCACTGATGCACAGAGCATTTATGCAAGAGTAAGTACCATTTGAGTGACATTTCCGCAATAGAATCATGATGAATTATAATACATTCCATTGTTGTCACTATATTAAATTTTGTTTGGATAATCAACTCAATTAAGCACTTATCATGTACATAAATGCTTATGTACAAGTTATTTTTTTGACAAACTATTTTCAAATAAACTACTGGTTGTTTTCATAACGTGAACATGTCATATGTTTTCATAAACTCTCACAAAGTGTCACAAGTGTTTATGTCGGTAAATAAGTTCAAATAAGTGAATACAAAAGGTATTATATTCTTGTCTTTGCTTTTAGCTAAATAAGTCTCTCATGAAAGGTTTATTTTCTTTTGTTCTGCAGAAGAGAAGAGAAAGAATAAATGAAAGATTGAGAATCTTGCAAACCCTTGTCCCAAATGGAACAAAGGTAGCTTCCTTAATTAATGGAAATTGAACTAAAAATTGGTTAAGGTGTACAAATTCTCAATTTCTCAATTTTTCATTGTGAATTGTAGGTAGATATTAGCACTATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCATCAAATTAAGGTAACTATTTGATAACCTTCATTATTCGATATCCAAATATGATATCAATTTTTCAGCTTTTTACATGCAAAAGATAATGATTAATTTATTTATTTATTTGGATGAACAGCTTCTGAGCTCAGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATGAATATTGGATTAGACCTCAGCTTTTCTTCTACAACTAATTAA
Protein sequence

>MS.gene91305.t1

MEPAQLISEEWDSLSGQYTAEEADFMNQFLTGSNTSTDNSANTFSTTTSSGTYSCDLATNFDSLSMFFCLEDAKFSPQYLDDNISKHINNDSIDHKGSCLEPVKLVLAANNEMMMVSEPCSEEDRSKNMENPAKRFRSSIEVSENIRNVRKCPKSASMRNNEEDLMWHGSNNCFSHVDSIGGTSSNLSLKEPEAPNLGRKSRATGGPATDAQSIYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQHQIKLLSSEDMWMYAPIAYNGMNIGLDLSFSSTTN