Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91306.t1 | RHN82191.1 | 86.7 | 330 | 44 | 0 | 1 | 330 | 51 | 380 | 1.40E-140 | 509.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91306.t1 | Q7XHI9 | 37.1 | 340 | 167 | 12 | 10 | 324 | 6 | 323 | 6.9e-35 | 149.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91306.t1 | G7IE61 | 86.7 | 330 | 44 | 0 | 1 | 330 | 1 | 330 | 1.0e-140 | 509.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene91306.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91306.t1 | MTR_1g106460 | 95.455 | 330 | 15 | 0 | 1 | 330 | 1 | 330 | 0.0 | 647 |
| MS.gene91306.t1 | MTR_1g106460 | 94.565 | 276 | 15 | 0 | 1 | 276 | 1 | 276 | 0.0 | 531 |
| MS.gene91306.t1 | MTR_5g005110 | 49.096 | 332 | 133 | 10 | 9 | 329 | 9 | 315 | 1.85e-86 | 263 |
| MS.gene91306.t1 | MTR_1g106470 | 42.900 | 331 | 133 | 9 | 1 | 324 | 1 | 282 | 2.23e-60 | 195 |
| MS.gene91306.t1 | MTR_5g005110 | 42.500 | 280 | 125 | 10 | 9 | 277 | 9 | 263 | 5.97e-50 | 167 |
| MS.gene91306.t1 | MTR_3g103030 | 52.147 | 163 | 77 | 1 | 161 | 323 | 153 | 314 | 6.92e-48 | 164 |
| MS.gene91306.t1 | MTR_1g018090 | 51.235 | 162 | 69 | 2 | 152 | 313 | 198 | 349 | 1.74e-40 | 145 |
| MS.gene91306.t1 | MTR_1g106480 | 54.745 | 137 | 29 | 2 | 217 | 323 | 18 | 151 | 3.66e-38 | 133 |
| MS.gene91306.t1 | MTR_1g106470 | 35.664 | 286 | 128 | 9 | 1 | 279 | 1 | 237 | 8.94e-28 | 108 |
| MS.gene91306.t1 | MTR_5g079500 | 62.857 | 70 | 26 | 0 | 237 | 306 | 217 | 286 | 8.97e-24 | 99.8 |
| MS.gene91306.t1 | MTR_8g093500 | 53.623 | 69 | 32 | 0 | 234 | 302 | 110 | 178 | 5.10e-18 | 82.8 |
| MS.gene91306.t1 | MTR_4g131160 | 43.333 | 90 | 49 | 1 | 214 | 301 | 170 | 259 | 7.00e-17 | 81.3 |
| MS.gene91306.t1 | MTR_4g131160 | 43.333 | 90 | 49 | 1 | 214 | 301 | 173 | 262 | 8.11e-17 | 80.9 |
| MS.gene91306.t1 | MTR_3g101810 | 49.254 | 67 | 34 | 0 | 234 | 300 | 167 | 233 | 1.16e-16 | 79.0 |
| MS.gene91306.t1 | MTR_7g069590 | 58.182 | 55 | 23 | 0 | 245 | 299 | 33 | 87 | 3.27e-16 | 75.1 |
| MS.gene91306.t1 | MTR_1g018090 | 40.310 | 129 | 67 | 2 | 152 | 280 | 198 | 316 | 4.53e-16 | 78.2 |
| MS.gene91306.t1 | MTR_1g080890 | 47.059 | 68 | 36 | 0 | 234 | 301 | 189 | 256 | 5.30e-14 | 72.4 |
| MS.gene91306.t1 | MTR_1g019240 | 43.548 | 62 | 35 | 0 | 254 | 315 | 101 | 162 | 1.70e-12 | 67.0 |
| MS.gene91306.t1 | MTR_5g017040 | 42.105 | 76 | 44 | 0 | 254 | 329 | 121 | 196 | 3.47e-12 | 67.0 |
| MS.gene91306.t1 | MTR_1g084980 | 50.000 | 48 | 24 | 0 | 254 | 301 | 478 | 525 | 1.19e-11 | 66.2 |
| MS.gene91306.t1 | MTR_3g449770 | 36.264 | 91 | 46 | 3 | 224 | 307 | 288 | 373 | 2.75e-11 | 64.7 |
| MS.gene91306.t1 | MTR_1g069155 | 37.349 | 83 | 45 | 1 | 226 | 301 | 298 | 380 | 6.86e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91306.t1 | AT2G14760 | 37.216 | 352 | 150 | 12 | 10 | 324 | 6 | 323 | 5.74e-56 | 185 |
| MS.gene91306.t1 | AT2G14760 | 35.890 | 365 | 150 | 13 | 10 | 324 | 6 | 336 | 3.03e-52 | 176 |
| MS.gene91306.t1 | AT4G33880 | 38.136 | 354 | 165 | 16 | 10 | 320 | 6 | 348 | 3.33e-46 | 160 |
| MS.gene91306.t1 | AT5G43175 | 54.140 | 157 | 57 | 2 | 184 | 325 | 63 | 219 | 5.82e-45 | 153 |
| MS.gene91306.t1 | AT1G27740 | 53.642 | 151 | 52 | 3 | 176 | 325 | 121 | 254 | 1.23e-44 | 153 |
| MS.gene91306.t1 | AT5G37800 | 61.039 | 77 | 27 | 1 | 230 | 306 | 196 | 269 | 1.74e-24 | 101 |
| MS.gene91306.t1 | AT1G66470 | 54.839 | 93 | 41 | 1 | 214 | 306 | 172 | 263 | 1.81e-24 | 101 |
| MS.gene91306.t1 | AT4G30980 | 45.783 | 83 | 45 | 0 | 219 | 301 | 111 | 193 | 1.70e-17 | 82.0 |
| MS.gene91306.t1 | AT4G30980 | 45.783 | 83 | 45 | 0 | 219 | 301 | 159 | 241 | 1.79e-17 | 82.8 |
| MS.gene91306.t1 | AT2G24260 | 53.846 | 65 | 30 | 0 | 237 | 301 | 34 | 98 | 4.40e-17 | 79.7 |
| MS.gene91306.t1 | AT2G24260 | 53.846 | 65 | 30 | 0 | 237 | 301 | 137 | 201 | 9.93e-17 | 80.5 |
| MS.gene91306.t1 | AT5G01305 | 48.649 | 74 | 33 | 1 | 237 | 305 | 36 | 109 | 2.47e-16 | 75.9 |
| MS.gene91306.t1 | AT3G21330 | 39.394 | 99 | 59 | 1 | 202 | 300 | 234 | 331 | 3.49e-16 | 79.0 |
| MS.gene91306.t1 | AT5G58010 | 47.143 | 70 | 37 | 0 | 232 | 301 | 93 | 162 | 8.32e-16 | 77.0 |
| MS.gene91306.t1 | AT4G00120 | 51.852 | 54 | 26 | 0 | 247 | 300 | 121 | 174 | 3.53e-15 | 73.6 |
| MS.gene91306.t1 | AT4G36930 | 39.189 | 74 | 45 | 0 | 245 | 318 | 198 | 271 | 5.41e-12 | 66.6 |
| MS.gene91306.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 223 | 302 | 5.83e-12 | 66.6 |
| MS.gene91306.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 223 | 302 | 5.83e-12 | 66.6 |
| MS.gene91306.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 223 | 302 | 5.83e-12 | 66.6 |
| MS.gene91306.t1 | AT1G09530 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 9.51e-12 | 66.2 |
| MS.gene91306.t1 | AT1G09530 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 9.51e-12 | 66.2 |
| MS.gene91306.t1 | AT1G09530 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 9.51e-12 | 66.2 |
| MS.gene91306.t1 | AT1G09530 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 9.51e-12 | 66.2 |
| MS.gene91306.t1 | AT1G09530 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 9.51e-12 | 66.2 |
| MS.gene91306.t1 | AT1G09530 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 9.51e-12 | 66.2 |
| MS.gene91306.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 294 | 373 | 1.01e-11 | 65.9 |
| MS.gene91306.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 294 | 373 | 1.01e-11 | 65.9 |
| MS.gene91306.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 294 | 373 | 1.01e-11 | 65.9 |
| MS.gene91306.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 294 | 373 | 1.01e-11 | 65.9 |
| MS.gene91306.t1 | AT5G67110 | 42.857 | 77 | 28 | 3 | 254 | 330 | 103 | 163 | 9.15e-11 | 61.2 |
Find 53 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACAGATTTGAAGTTAA+AGG | 0.203807 | 1.3:-73001749 | MS.gene91306:CDS |
| TCAAATCTGTTGAATCATTC+TGG | 0.235168 | 1.3:+73001758 | None:intergenic |
| CATTAGGGACTAGGCTTTGC+AGG | 0.277798 | 1.3:+73001501 | None:intergenic |
| CTTGGAAGTTATTAAGTAAC+TGG | 0.304266 | 1.3:+73002625 | None:intergenic |
| TTCATTCCATTGTAAGCAAT+TGG | 0.326950 | 1.3:+73001141 | None:intergenic |
| CAAGTTTCTGAGCACCATTA+TGG | 0.327811 | 1.3:-73002606 | MS.gene91306:CDS |
| TCAACAGATTTGAAGTTAAA+GGG | 0.332099 | 1.3:-73001748 | MS.gene91306:CDS |
| AGAGTTTGGTAAAGATGTTT+TGG | 0.332649 | 1.3:-73002292 | MS.gene91306:CDS |
| CTAAATTGAAATTTCCATAA+TGG | 0.336286 | 1.3:+73002592 | None:intergenic |
| CCTTGGTTCCATTAGGGACT+AGG | 0.345834 | 1.3:+73001492 | None:intergenic |
| CATAATGGTGCTCAGAAACT+TGG | 0.346093 | 1.3:+73002607 | None:intergenic |
| GAAAACACTTCTGAAGAGTT+TGG | 0.361815 | 1.3:-73002306 | MS.gene91306:CDS |
| CAAGGAAAGAAAATGGATTC+TGG | 0.368940 | 1.3:-73002717 | None:intergenic |
| TTTAGCACTTATAGTGTTCA+AGG | 0.374420 | 1.3:-73002351 | MS.gene91306:CDS |
| AAAGCTACCTTGGTTCCATT+AGG | 0.376583 | 1.3:+73001485 | None:intergenic |
| GGATGAAAGTCATGATCTTC+AGG | 0.377305 | 1.3:-73001857 | MS.gene91306:CDS |
| ACAAGAGAAATGTGAAATCT+AGG | 0.391427 | 1.3:-73001918 | MS.gene91306:CDS |
| TTTATTGCTAGTATCAGAAA+TGG | 0.398251 | 1.3:+73002446 | None:intergenic |
| AAGCTACCTTGGTTCCATTA+GGG | 0.399329 | 1.3:+73001486 | None:intergenic |
| GCTATATATCTATGGTAGTT+CGG | 0.420297 | 1.3:+73001089 | None:intergenic |
| CTGCAAAGCCTAGTCCCTAA+TGG | 0.420311 | 1.3:-73001500 | MS.gene91306:CDS |
| AATAAATTTCATAATACAAA+TGG | 0.447590 | 1.3:-73002429 | MS.gene91306:CDS |
| GAAGAATGGAGTTCTCTTAG+TGG | 0.449677 | 1.3:-73002681 | MS.gene91306:CDS |
| ACTATTGTGGATTCATGTCC+TGG | 0.460970 | 1.3:+73002549 | None:intergenic |
| TATATCTATGGTAGTTCGGT+TGG | 0.463306 | 1.3:+73001093 | None:intergenic |
| TAGAAATTCCATCTACATCA+TGG | 0.473913 | 1.3:-73002572 | MS.gene91306:CDS |
| TGTCCTGGCCATGATGTAGA+TGG | 0.481256 | 1.3:+73002564 | None:intergenic |
| GCTATTCATGCTCACTATTG+TGG | 0.481463 | 1.3:+73002536 | None:intergenic |
| AAGGGAAAATCAAAATGTAA+TGG | 0.488727 | 1.3:-73001730 | MS.gene91306:CDS |
| ATATCTATGGTAGTTCGGTT+GGG | 0.502830 | 1.3:+73001094 | None:intergenic |
| GACATTCATGTAGCCAATGT+TGG | 0.503244 | 1.3:+73002377 | None:intergenic |
| AAGATCTAGGAGCTCGATGA+AGG | 0.519130 | 1.3:-73002223 | MS.gene91306:intron |
| TTCTGAGCTCTGATGATCAC+TGG | 0.521996 | 1.3:-73001173 | MS.gene91306:CDS |
| GCTTACAATGGAATGAACAT+TGG | 0.525606 | 1.3:-73001135 | MS.gene91306:CDS |
| GTGAGCAAAGTTGTGAAGAA+TGG | 0.531367 | 1.3:-73002695 | MS.gene91306:CDS |
| GTTCGGTTGGGATAATGTTG+AGG | 0.541601 | 1.3:+73001106 | None:intergenic |
| AATGATCATGTAGCCAACAT+TGG | 0.547548 | 1.3:-73002390 | MS.gene91306:CDS |
| ATTCCATCTACATCATGGCC+AGG | 0.561187 | 1.3:-73002567 | MS.gene91306:CDS |
| GTTCAAAAGCAACGCTGACG+AGG | 0.565933 | 1.3:-73001878 | MS.gene91306:CDS |
| GTTCTTGATACACTCTTTCG+CGG | 0.570482 | 1.3:+73002266 | None:intergenic |
| TCAGGAGCAGAATTTGAGCT+CGG | 0.588142 | 1.3:-73001839 | MS.gene91306:CDS |
| GCTTTAAAGAAGCTAAATGC+AGG | 0.589797 | 1.3:-73001799 | MS.gene91306:CDS |
| GGATATCAGCACCATGCTTG+AGG | 0.592275 | 1.3:-73001382 | MS.gene91306:CDS |
| AAATTTCATAATACAAATGG+TGG | 0.597992 | 1.3:-73002426 | MS.gene91306:CDS |
| TATGCTCCAATTGCTTACAA+TGG | 0.606083 | 1.3:-73001147 | MS.gene91306:CDS |
| GGAAAATCAAAATGTAATGG+AGG | 0.608687 | 1.3:-73001727 | MS.gene91306:CDS |
| TTGCACAGCTTCCTCAAGCA+TGG | 0.610000 | 1.3:+73001371 | None:intergenic |
| ATAGACACCTTGTGGATCAG+AGG | 0.616647 | 1.3:+73001699 | None:intergenic |
| ATCTAGGAAGAAACCAAAGT+CGG | 0.617908 | 1.3:-73001902 | MS.gene91306:CDS |
| CCTAGTCCCTAATGGAACCA+AGG | 0.646129 | 1.3:-73001492 | MS.gene91306:intron |
| GGTTCTGCCTCTGATCCACA+AGG | 0.648330 | 1.3:-73001706 | MS.gene91306:CDS |
| GGAGCAGAATTTGAGCTCGG+AGG | 0.653936 | 1.3:-73001836 | MS.gene91306:CDS |
| AGAGTGTATCAAGAACAACC+TGG | 0.703200 | 1.3:-73002259 | MS.gene91306:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTTCATAATACAAA+TGG | - | chr1.3:73001374-73001393 | MS.gene91306:CDS | 10.0% |
| !! | TATTTCAAGAATATATAATA+TGG | + | chr1.3:73002563-73002582 | None:intergenic | 10.0% |
| !! | TAAATTTATGATTCATATCA+AGG | + | chr1.3:73002521-73002540 | None:intergenic | 15.0% |
| !! | AAATTTCATAATACAAATGG+TGG | - | chr1.3:73001377-73001396 | MS.gene91306:CDS | 20.0% |
| !! | AACAAATAGAAACATGTATT+TGG | + | chr1.3:73001697-73001716 | None:intergenic | 20.0% |
| !! | CAAATTAAGGTAAAAACATA+AGG | - | chr1.3:73002476-73002495 | MS.gene91306:CDS | 20.0% |
| !! | CTAAATTGAAATTTCCATAA+TGG | + | chr1.3:73001214-73001233 | None:intergenic | 20.0% |
| !!! | CTGTGATTTTGAATTATTAA+AGG | - | chr1.3:73002207-73002226 | MS.gene91306:intron | 20.0% |
| !!! | CTTATGTTTTTACCTTAATT+TGG | + | chr1.3:73002478-73002497 | None:intergenic | 20.0% |
| !!! | TATTTGTTTACATTTAAGAC+CGG | - | chr1.3:73001709-73001728 | MS.gene91306:CDS | 20.0% |
| !!! | TTATTAGCAATGGTATTTTT+AGG | + | chr1.3:73002157-73002176 | None:intergenic | 20.0% |
| !!! | TTTTCTTACTCATGAAATAT+AGG | - | chr1.3:73002397-73002416 | MS.gene91306:CDS | 20.0% |
| !!! | TTTTGATTTAATGATTCCAT+AGG | - | chr1.3:73001853-73001872 | MS.gene91306:CDS | 20.0% |
| ! | AAAAATCAGGAAAAAGATCT+AGG | - | chr1.3:73001567-73001586 | MS.gene91306:intron | 25.0% |
| ! | AAGGGAAAATCAAAATGTAA+TGG | - | chr1.3:73002073-73002092 | MS.gene91306:intron | 25.0% |
| ! | AATTCAAAATCACAGTACTT+TGG | + | chr1.3:73002202-73002221 | None:intergenic | 25.0% |
| ! | GGACATAAAATTATTAGCAA+TGG | + | chr1.3:73002167-73002186 | None:intergenic | 25.0% |
| ! | GGTATTATGTATAAGCAAAA+AGG | - | chr1.3:73001647-73001666 | MS.gene91306:intron | 25.0% |
| ! | TTTATTGCTAGTATCAGAAA+TGG | + | chr1.3:73001360-73001379 | None:intergenic | 25.0% |
| !! | TCAACAGATTTGAAGTTAAA+GGG | - | chr1.3:73002055-73002074 | MS.gene91306:intron | 25.0% |
| !! | TTACTATTATCAGCATTTTG+AGG | + | chr1.3:73001305-73001324 | None:intergenic | 25.0% |
| !! | TTCAACAGATTTGAAGTTAA+AGG | - | chr1.3:73002054-73002073 | MS.gene91306:intron | 25.0% |
| !!! | GTATTTTTAGGAAATGCAAT+TGG | + | chr1.3:73002145-73002164 | None:intergenic | 25.0% |
| !!! | TCAATGTGTTTAATTTTGTC+TGG | - | chr1.3:73001810-73001829 | MS.gene91306:CDS | 25.0% |
| ACAAGAGAAATGTGAAATCT+AGG | - | chr1.3:73001885-73001904 | MS.gene91306:CDS | 30.0% | |
| CTTGGAAGTTATTAAGTAAC+TGG | + | chr1.3:73001181-73001200 | None:intergenic | 30.0% | |
| GGAAAATCAAAATGTAATGG+AGG | - | chr1.3:73002076-73002095 | MS.gene91306:intron | 30.0% | |
| GTACTTTGGACAAAAATTCA+AGG | + | chr1.3:73002188-73002207 | None:intergenic | 30.0% | |
| TAGAAATTCCATCTACATCA+TGG | - | chr1.3:73001231-73001250 | MS.gene91306:intron | 30.0% | |
| TCAAATCTGTTGAATCATTC+TGG | + | chr1.3:73002048-73002067 | None:intergenic | 30.0% | |
| TCTTACTCATGAAATATAGG+TGG | - | chr1.3:73002400-73002419 | MS.gene91306:CDS | 30.0% | |
| TGCTTATACATAATACCAGA+GGG | + | chr1.3:73001644-73001663 | None:intergenic | 30.0% | |
| TTCATTCCATTGTAAGCAAT+TGG | + | chr1.3:73002665-73002684 | None:intergenic | 30.0% | |
| TTGCTTATACATAATACCAG+AGG | + | chr1.3:73001645-73001664 | None:intergenic | 30.0% | |
| TTTAGCACTTATAGTGTTCA+AGG | - | chr1.3:73001452-73001471 | MS.gene91306:intron | 30.0% | |
| ! | AAGTGTTTTCAGTTATCTGT+TGG | + | chr1.3:73001487-73001506 | None:intergenic | 30.0% |
| ! | AGAGTTTGGTAAAGATGTTT+TGG | - | chr1.3:73001511-73001530 | MS.gene91306:CDS | 30.0% |
| ! | ATCTTTTTCCTGATTTTTCC+AGG | + | chr1.3:73001565-73001584 | None:intergenic | 30.0% |
| ! | GCAATATGTGAAGTTTTTAC+AGG | - | chr1.3:73002451-73002470 | MS.gene91306:CDS | 30.0% |
| ! | GTTTTTACAGGTCCAAATTA+AGG | - | chr1.3:73002463-73002482 | MS.gene91306:CDS | 30.0% |
| AAGAACAACCTGGAAAAATC+AGG | - | chr1.3:73001554-73001573 | MS.gene91306:intron | 35.0% | |
| AATGATCATGTAGCCAACAT+TGG | - | chr1.3:73001413-73001432 | MS.gene91306:intron | 35.0% | |
| ACCAGGACTATAAAAAAAGC+AGG | + | chr1.3:73001751-73001770 | None:intergenic | 35.0% | |
| ATCTAGGAAGAAACCAAAGT+CGG | - | chr1.3:73001901-73001920 | MS.gene91306:CDS | 35.0% | |
| ATGATTCATATCAAGGCCTA+AGG | + | chr1.3:73002514-73002533 | None:intergenic | 35.0% | |
| GCTTACAATGGAATGAACAT+TGG | - | chr1.3:73002668-73002687 | MS.gene91306:CDS | 35.0% | |
| GTGATATTGTGACAAGCATT+TGG | - | chr1.3:73001769-73001788 | MS.gene91306:CDS | 35.0% | |
| TATGCTCCAATTGCTTACAA+TGG | - | chr1.3:73002656-73002675 | MS.gene91306:CDS | 35.0% | |
| TCTTTGTAAATTACTCCCTC+TGG | - | chr1.3:73001626-73001645 | MS.gene91306:intron | 35.0% | |
| ! | CTCTTGTTCTTTTGTACCTA+TGG | + | chr1.3:73001872-73001891 | None:intergenic | 35.0% |
| ! | GAAAACACTTCTGAAGAGTT+TGG | - | chr1.3:73001497-73001516 | MS.gene91306:CDS | 35.0% |
| ! | TGTTTACATTTAAGACCGGA+GGG | - | chr1.3:73001713-73001732 | MS.gene91306:CDS | 35.0% |
| ! | TTGTTTACATTTAAGACCGG+AGG | - | chr1.3:73001712-73001731 | MS.gene91306:CDS | 35.0% |
| !! | GCTTTAAAGAAGCTAAATGC+AGG | - | chr1.3:73002004-73002023 | MS.gene91306:intron | 35.0% |
| !!! | TCCTGCTTTTTTTATAGTCC+TGG | - | chr1.3:73001747-73001766 | MS.gene91306:CDS | 35.0% |
| AAAGCTACCTTGGTTCCATT+AGG | + | chr1.3:73002321-73002340 | None:intergenic | 40.0% | |
| AAGCTACCTTGGTTCCATTA+GGG | + | chr1.3:73002320-73002339 | None:intergenic | 40.0% | |
| ACTATTGTGGATTCATGTCC+TGG | + | chr1.3:73001257-73001276 | None:intergenic | 40.0% | |
| AGAGTGTATCAAGAACAACC+TGG | - | chr1.3:73001544-73001563 | MS.gene91306:intron | 40.0% | |
| ATGCTTGTCACAATATCACC+AGG | + | chr1.3:73001768-73001787 | None:intergenic | 40.0% | |
| ATTCATATCAAGGCCTAAGG+AGG | + | chr1.3:73002511-73002530 | None:intergenic | 40.0% | |
| CAAGTTTCTGAGCACCATTA+TGG | - | chr1.3:73001197-73001216 | MS.gene91306:intron | 40.0% | |
| CATAATGGTGCTCAGAAACT+TGG | + | chr1.3:73001199-73001218 | None:intergenic | 40.0% | |
| GAAGAATGGAGTTCTCTTAG+TGG | - | chr1.3:73001122-73001141 | MS.gene91306:CDS | 40.0% | |
| GACATTCATGTAGCCAATGT+TGG | + | chr1.3:73001429-73001448 | None:intergenic | 40.0% | |
| GCTATTCATGCTCACTATTG+TGG | + | chr1.3:73001270-73001289 | None:intergenic | 40.0% | |
| GGATGAAAGTCATGATCTTC+AGG | - | chr1.3:73001946-73001965 | MS.gene91306:intron | 40.0% | |
| GTGAGCAAAGTTGTGAAGAA+TGG | - | chr1.3:73001108-73001127 | MS.gene91306:CDS | 40.0% | |
| GTTCTTGATACACTCTTTCG+CGG | + | chr1.3:73001540-73001559 | None:intergenic | 40.0% | |
| TGTCATTGAGAAAGCTACCT+TGG | + | chr1.3:73002331-73002350 | None:intergenic | 40.0% | |
| ! | ACTTTTGCATAGACACCTTG+TGG | + | chr1.3:73002115-73002134 | None:intergenic | 40.0% |
| !! | AGCTGAGGAAGCTGATTTTA+TGG | - | chr1.3:73001154-73001173 | MS.gene91306:CDS | 40.0% |
| !! | GCTGAGGAAGCTGATTTTAT+GGG | - | chr1.3:73001155-73001174 | MS.gene91306:CDS | 40.0% |
| !! | TTGCTTTTGAACTCCGACTT+TGG | + | chr1.3:73001917-73001936 | None:intergenic | 40.0% |
| !!! | TAGTGGATTTTACACAGCTG+AGG | - | chr1.3:73001139-73001158 | MS.gene91306:CDS | 40.0% |
| AAGATCTAGGAGCTCGATGA+AGG | - | chr1.3:73001580-73001599 | MS.gene91306:intron | 45.0% | |
| AAGGATCCTCATTCCTCCTT+AGG | - | chr1.3:73002495-73002514 | MS.gene91306:CDS | 45.0% | |
| ATAGACACCTTGTGGATCAG+AGG | + | chr1.3:73002107-73002126 | None:intergenic | 45.0% | |
| ATTCCATCTACATCATGGCC+AGG | - | chr1.3:73001236-73001255 | MS.gene91306:intron | 45.0% | |
| GTTCGGTTGGGATAATGTTG+AGG | + | chr1.3:73002700-73002719 | None:intergenic | 45.0% | |
| TCAGGAGCAGAATTTGAGCT+CGG | - | chr1.3:73001964-73001983 | MS.gene91306:intron | 45.0% | |
| ! | AAGCAAAAAGGTGCGTGTGT+TGG | - | chr1.3:73001659-73001678 | MS.gene91306:intron | 45.0% |
| ! | TTCTGAGCTCTGATGATCAC+TGG | - | chr1.3:73002630-73002649 | MS.gene91306:CDS | 45.0% |
| AGGAAGTGACTTACTCCCTC+CGG | + | chr1.3:73001731-73001750 | None:intergenic | 50.0% | |
| CATTAGGGACTAGGCTTTGC+AGG | + | chr1.3:73002305-73002324 | None:intergenic | 50.0% | |
| CCTAGTCCCTAATGGAACCA+AGG | - | chr1.3:73002311-73002330 | MS.gene91306:CDS | 50.0% | |
| CCTTGGTTCCATTAGGGACT+AGG | + | chr1.3:73002314-73002333 | None:intergenic | 50.0% | |
| CTGCAAAGCCTAGTCCCTAA+TGG | - | chr1.3:73002303-73002322 | MS.gene91306:CDS | 50.0% | |
| GGATATCAGCACCATGCTTG+AGG | - | chr1.3:73002421-73002440 | MS.gene91306:CDS | 50.0% | |
| GTTCAAAAGCAACGCTGACG+AGG | - | chr1.3:73001925-73001944 | MS.gene91306:CDS | 50.0% | |
| TCAAGGCCTAAGGAGGAATG+AGG | + | chr1.3:73002504-73002523 | None:intergenic | 50.0% | |
| TCTAGGAGCTCGATGAAGGT+AGG | - | chr1.3:73001584-73001603 | MS.gene91306:intron | 50.0% | |
| TGTCCTGGCCATGATGTAGA+TGG | + | chr1.3:73001242-73001261 | None:intergenic | 50.0% | |
| TTGCACAGCTTCCTCAAGCA+TGG | + | chr1.3:73002435-73002454 | None:intergenic | 50.0% | |
| GGAGCAGAATTTGAGCTCGG+AGG | - | chr1.3:73001967-73001986 | MS.gene91306:intron | 55.0% | |
| GGTTCTGCCTCTGATCCACA+AGG | - | chr1.3:73002097-73002116 | MS.gene91306:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 73001098 | 73002727 | 73001098 | ID=MS.gene91306 |
| chr1.3 | mRNA | 73001098 | 73002727 | 73001098 | ID=MS.gene91306.t1;Parent=MS.gene91306 |
| chr1.3 | exon | 73002224 | 73002727 | 73002224 | ID=MS.gene91306.t1.exon1;Parent=MS.gene91306.t1 |
| chr1.3 | CDS | 73002224 | 73002727 | 73002224 | ID=cds.MS.gene91306.t1;Parent=MS.gene91306.t1 |
| chr1.3 | exon | 73001693 | 73001950 | 73001693 | ID=MS.gene91306.t1.exon2;Parent=MS.gene91306.t1 |
| chr1.3 | CDS | 73001693 | 73001950 | 73001693 | ID=cds.MS.gene91306.t1;Parent=MS.gene91306.t1 |
| chr1.3 | exon | 73001493 | 73001558 | 73001493 | ID=MS.gene91306.t1.exon3;Parent=MS.gene91306.t1 |
| chr1.3 | CDS | 73001493 | 73001558 | 73001493 | ID=cds.MS.gene91306.t1;Parent=MS.gene91306.t1 |
| chr1.3 | exon | 73001341 | 73001406 | 73001341 | ID=MS.gene91306.t1.exon4;Parent=MS.gene91306.t1 |
| chr1.3 | CDS | 73001341 | 73001406 | 73001341 | ID=cds.MS.gene91306.t1;Parent=MS.gene91306.t1 |
| chr1.3 | exon | 73001098 | 73001196 | 73001098 | ID=MS.gene91306.t1.exon5;Parent=MS.gene91306.t1 |
| chr1.3 | CDS | 73001098 | 73001196 | 73001098 | ID=cds.MS.gene91306.t1;Parent=MS.gene91306.t1 |
| Gene Sequence |
| Protein sequence |