AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91320.t1 MTR_5g036670 91.837 147 12 0 18 164 28 174 4.45e-85 274
MS.gene91320.t1 MTR_8g062700 60.345 174 64 2 9 181 17 186 7.69e-61 205
MS.gene91320.t1 MTR_8g062700 60.345 174 64 2 9 181 17 186 7.76e-61 205
MS.gene91320.t1 MTR_6g008970 62.179 156 55 1 26 181 56 207 1.63e-55 190
MS.gene91320.t1 MTR_6g008995 64.444 135 46 2 27 161 31 163 1.14e-48 165
MS.gene91320.t1 MTR_6g008995 64.486 107 36 2 55 161 2 106 5.20e-37 133
MS.gene91320.t1 MTR_8g062350 37.912 182 74 3 24 166 5 186 3.47e-30 110
MS.gene91320.t1 MTR_1g105955 44.444 126 63 2 26 151 9 127 3.26e-26 99.8
MS.gene91320.t1 MTR_1g105955 52.174 69 33 0 33 101 95 163 5.82e-18 78.2
MS.gene91320.t1 MTR_1g105960 59.740 77 31 0 34 110 2 78 9.88e-26 96.3
MS.gene91320.t1 MTR_7g013410 44.167 120 56 3 37 153 2 113 6.33e-25 95.5
MS.gene91320.t1 MTR_1g104940 56.471 85 36 1 33 117 14 97 1.42e-23 91.3
MS.gene91320.t1 MTR_1g104960 34.646 127 83 0 32 158 12 138 1.04e-20 85.5
MS.gene91320.t1 MTR_1g104960 48.571 70 36 0 34 103 100 169 2.69e-16 73.9
MS.gene91320.t1 MTR_3g006065 55.696 79 34 1 25 102 82 160 1.17e-20 85.5
MS.gene91320.t1 MTR_3g006065 37.097 124 73 3 27 149 2 121 1.97e-16 74.3
MS.gene91320.t1 MTR_3g006150 55.696 79 34 1 25 102 82 160 1.68e-20 84.3
MS.gene91320.t1 MTR_3g006150 37.097 124 73 3 27 149 2 121 4.16e-16 72.8
MS.gene91320.t1 MTR_4g133470 47.059 102 43 2 4 105 154 244 2.36e-20 86.3
MS.gene91320.t1 MTR_4g133470 39.316 117 62 2 32 148 11 118 3.83e-17 77.4
MS.gene91320.t1 MTR_4g133470 31.061 132 86 2 21 152 79 205 3.81e-13 66.6
MS.gene91320.t1 MTR_4g133300 53.659 82 36 1 24 105 165 244 4.27e-20 85.5
MS.gene91320.t1 MTR_4g133300 40.171 117 61 2 32 148 11 118 8.66e-18 79.3
MS.gene91320.t1 MTR_4g133300 31.818 132 85 2 21 152 79 205 3.19e-14 69.7
MS.gene91320.t1 MTR_3g006125 50.000 84 41 1 23 105 170 253 1.03e-19 84.7
MS.gene91320.t1 MTR_3g006125 34.641 153 90 4 27 173 83 231 1.32e-14 70.9
MS.gene91320.t1 MTR_1g023820 85.366 41 6 0 63 103 17 57 5.04e-18 77.0
MS.gene91320.t1 MTR_0091s0080 60.000 70 21 2 145 207 232 301 1.14e-17 80.9
MS.gene91320.t1 MTR_3g006105 50.000 80 39 1 23 101 89 168 1.20e-17 77.4
MS.gene91320.t1 MTR_3g006105 37.209 129 75 3 27 149 2 130 1.84e-16 74.3
MS.gene91320.t1 MTR_3g006185 50.649 77 37 1 26 101 91 167 1.64e-17 77.0
MS.gene91320.t1 MTR_3g006185 49.351 77 38 1 27 102 2 78 1.76e-13 66.2
MS.gene91320.t1 MTR_1g105010 44.048 84 46 1 26 108 8 91 2.30e-16 72.4
MS.gene91320.t1 MTR_2g097830 41.584 101 50 2 32 132 69 160 2.04e-15 71.2
MS.gene91320.t1 MTR_7g089490 45.833 72 39 0 30 101 13 84 3.80e-15 69.3
MS.gene91320.t1 MTR_1g104937 38.462 78 48 0 31 108 10 87 1.72e-14 67.4
MS.gene91320.t1 MTR_1g093310 50.000 82 33 2 28 107 2 77 4.17e-14 65.5
MS.gene91320.t1 MTR_1g109550 34.167 120 69 2 30 149 13 122 5.53e-14 66.6
MS.gene91320.t1 MTR_1g104980 32.456 114 62 1 35 148 1 99 1.41e-13 66.6
MS.gene91320.t1 MTR_1g104980 41.333 75 44 0 36 110 73 147 3.50e-12 62.8
MS.gene91320.t1 MTR_1g091047 46.269 67 35 1 32 97 8 74 1.87e-12 60.8
MS.gene91320.t1 MTR_7g013380 33.636 110 63 3 47 151 115 219 5.97e-12 63.9
MS.gene91320.t1 MTR_3g006010 48.052 77 39 1 27 102 2 78 7.05e-12 63.9
MS.gene91320.t1 MTR_8g064930 58.696 46 18 1 160 204 5 50 4.22e-11 56.6
MS.gene91320.t1 MTR_3g006000 47.945 73 35 3 33 103 7 78 9.35e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91320.t1 AT1G70060 75.182 137 33 1 26 161 7 143 3.46e-59 200
MS.gene91320.t1 AT1G70060 75.182 137 33 1 26 161 7 143 3.46e-59 200
MS.gene91320.t1 AT1G24190 72.059 136 38 0 26 161 7 142 6.68e-58 197
MS.gene91320.t1 AT1G24190 72.059 136 38 0 26 161 7 142 6.87e-58 197
MS.gene91320.t1 AT1G24190 72.059 136 38 0 26 161 7 142 7.28e-58 196
MS.gene91320.t1 AT3G01320 64.748 139 48 1 23 161 47 184 1.68e-51 178
MS.gene91320.t1 AT3G01320 64.748 139 48 1 23 161 47 184 1.85e-51 178
MS.gene91320.t1 AT1G59890 58.599 157 59 2 9 161 17 171 4.04e-48 169
MS.gene91320.t1 AT5G15020 64.444 135 46 1 27 161 46 178 4.29e-48 169
MS.gene91320.t1 AT1G59890 58.599 157 59 2 9 161 17 171 4.32e-48 169
MS.gene91320.t1 AT1G59890 58.599 157 59 2 9 161 17 171 4.37e-48 169
MS.gene91320.t1 AT1G59890 58.599 157 59 2 9 161 17 171 4.53e-48 168
MS.gene91320.t1 AT5G15020 64.444 135 46 1 27 161 46 178 4.72e-48 168
MS.gene91320.t1 AT1G24200 57.353 136 55 1 26 161 7 139 1.50e-47 155
MS.gene91320.t1 AT1G10450 62.595 131 47 1 31 161 82 210 3.44e-46 163
MS.gene91320.t1 AT1G10450 62.595 131 47 1 31 161 31 159 3.55e-46 163
MS.gene91320.t1 AT1G10450 62.595 131 47 1 31 161 31 159 3.55e-46 163
MS.gene91320.t1 AT1G70030 47.794 136 69 2 26 161 4 137 1.01e-34 121
MS.gene91320.t1 AT5G15025 53.398 103 44 1 9 107 19 121 8.08e-27 99.8
MS.gene91320.t1 AT1G70030 45.968 124 64 2 27 148 16 138 2.88e-25 96.3
MS.gene91320.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.34e-25 102
MS.gene91320.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.38e-25 102
MS.gene91320.t1 AT4G12020 61.728 81 30 1 29 109 237 316 4.45e-25 102
MS.gene91320.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.49e-25 102
MS.gene91320.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.49e-25 102
MS.gene91320.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.51e-25 102
MS.gene91320.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.58e-25 102
MS.gene91320.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.62e-25 102
MS.gene91320.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.62e-25 102
MS.gene91320.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.64e-25 102
MS.gene91320.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.86e-25 102
MS.gene91320.t1 AT1G24230 38.519 135 78 3 28 161 81 211 6.37e-25 98.2
MS.gene91320.t1 AT1G24230 35.537 121 62 3 29 148 10 115 1.78e-16 75.9
MS.gene91320.t1 AT1G70030 50.000 102 50 1 27 128 16 116 1.13e-24 94.4
MS.gene91320.t1 AT5G35610 40.816 147 72 3 26 161 3 145 4.16e-23 91.3
MS.gene91320.t1 AT1G27280 33.083 133 88 1 30 161 78 210 1.83e-20 85.9
MS.gene91320.t1 AT1G24250 35.971 139 60 3 21 153 103 218 2.23e-18 80.9
MS.gene91320.t1 AT1G27220 48.649 74 38 0 28 101 9 82 2.56e-18 79.3
MS.gene91320.t1 AT1G27250 43.011 93 47 1 8 100 2 88 3.46e-18 77.8
MS.gene91320.t1 AT1G23810 33.835 133 64 2 30 161 106 215 1.54e-16 75.9
MS.gene91320.t1 AT1G27260 33.884 121 72 2 32 146 2 120 8.57e-16 73.6
MS.gene91320.t1 AT1G27260 30.827 133 68 2 30 161 90 199 4.08e-14 68.9
MS.gene91320.t1 AT1G24210 32.558 129 65 3 23 150 4 111 8.93e-16 72.0
MS.gene91320.t1 AT5G15040 44.444 72 40 0 36 107 6 77 1.48e-14 66.6
MS.gene91320.t1 AT5G15040 44.444 72 40 0 36 107 6 77 1.48e-14 66.6
MS.gene91320.t1 AT5G15040 44.444 72 40 0 36 107 6 77 1.48e-14 66.6
MS.gene91320.t1 AT1G27240 29.787 141 76 5 30 148 11 150 6.84e-11 59.3

Find 45 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGTTTACAAGTCATTTA+TGG 0.140196 1.3:-72822895 MS.gene91320:CDS
CTCATGGCCCTTTGACAAAA+AGG 0.252815 1.3:+72823128 None:intergenic
TAAGATCAAGTTTCAAGGTC+TGG 0.372422 1.3:-72823472 MS.gene91320:intron
TCTTTGTAGACCAGGGTGAT+AGG 0.392252 1.3:+72822840 None:intergenic
GAGTTATGTGAACACGATAA+AGG 0.392834 1.3:-72823040 MS.gene91320:intron
GACCTCAAACATATTGTTGT+TGG 0.414273 1.3:+72822487 None:intergenic
TTAATCAAACCTGAGATTGT+TGG 0.433476 1.3:+72823601 None:intergenic
ACCTCAAACATATTGTTGTT+GGG 0.434653 1.3:+72822488 None:intergenic
TTCTCTAAGATCAAGTTTCA+AGG 0.443202 1.3:-72823477 MS.gene91320:intron
GAAGGGCAAGGTTTACTTAA+GGG 0.444052 1.3:-72822450 MS.gene91320:CDS
AGAAGGGCAAGGTTTACTTA+AGG 0.461904 1.3:-72822451 MS.gene91320:CDS
CACATACCTCTTTGTAGACC+AGG 0.470385 1.3:+72822832 None:intergenic
CTCAAAACAGGACGGCATCC+TGG 0.472527 1.3:+72822553 None:intergenic
AGTCATAGAGACTTGATCTT+GGG 0.473990 1.3:-72823159 MS.gene91320:CDS
AAGATCAAGTTTCAAGGTCT+GGG 0.474264 1.3:-72823471 MS.gene91320:CDS
CAACCCATACTCCTCAAAAC+AGG 0.481177 1.3:+72822541 None:intergenic
TGCCCTTCTTCTTATCGACT+CGG 0.487544 1.3:+72822465 None:intergenic
TTTATGCAGACTCGGTTTCA+GGG 0.487740 1.3:-72822924 MS.gene91320:intron
TCTACCGTGCCAACAATCTC+AGG 0.498656 1.3:-72823610 MS.gene91320:intron
TCCCAACAACAATATGTTTG+AGG 0.507864 1.3:-72822489 MS.gene91320:CDS
AAGTCATAGAGACTTGATCT+TGG 0.513611 1.3:-72823160 MS.gene91320:CDS
AGATAAGAAGGAAAAGTATG+AGG 0.539361 1.3:-72823368 MS.gene91320:CDS
GTGTTTAATAGGACAAGGCC+AGG 0.549799 1.3:-72822571 MS.gene91320:intron
TTGCTCATCCTCAGACGAAA+GGG 0.552798 1.3:+72823101 None:intergenic
TGAGATTACCCTTTCGTCTG+AGG 0.555293 1.3:-72823109 MS.gene91320:CDS
GGTCCGAGTCGATAAGAAGA+AGG 0.560540 1.3:-72822468 MS.gene91320:CDS
GGCAAGGTTTACTTAAGGGA+CGG 0.564135 1.3:-72822446 MS.gene91320:CDS
CATATTGAATACGTACAGAA+AGG 0.566699 1.3:-72822871 MS.gene91320:CDS
GGGCAACCGCCGAAGCGAGA+TGG 0.572379 1.3:-72823451 MS.gene91320:CDS
AGCATATCTCAAGGCGGTCA+AGG 0.575940 1.3:-72823401 MS.gene91320:CDS
GACCGCCTTGAGATATGCTA+AGG 0.576633 1.3:+72823405 None:intergenic
CAGACGAAAGGGTAATCTCA+TGG 0.592774 1.3:+72823112 None:intergenic
GTTGCTCATCCTCAGACGAA+AGG 0.601293 1.3:+72823100 None:intergenic
TGAAAGATTGCAAAGCACAA+AGG 0.611759 1.3:-72823330 MS.gene91320:intron
CAAACCTGAGATTGTTGGCA+CGG 0.613924 1.3:+72823606 None:intergenic
GTCCGAGTCGATAAGAAGAA+GGG 0.622235 1.3:-72822467 MS.gene91320:CDS
ATTTGTAGAGTTGATACTGA+TGG 0.633224 1.3:-72823213 MS.gene91320:intron
GGAAAGTAAGCCTATCACCC+TGG 0.646683 1.3:-72822850 MS.gene91320:CDS
TGATGCCTTAGCATATCTCA+AGG 0.655569 1.3:-72823410 MS.gene91320:CDS
AGTCGATAAGAAGAAGGGCA+AGG 0.674503 1.3:-72822462 MS.gene91320:CDS
TATCACCCTGGTCTACAAAG+AGG 0.680013 1.3:-72822838 MS.gene91320:intron
ACATACCTCTTTGTAGACCA+GGG 0.680303 1.3:+72822833 None:intergenic
CCATACTCCTCAAAACAGGA+CGG 0.704051 1.3:+72822545 None:intergenic
TGGTGTCGTTGAAAGAGTGA+AGG 0.705045 1.3:-72823193 MS.gene91320:CDS
TGCCTTAGCATATCTCAAGG+CGG 0.760016 1.3:-72823407 MS.gene91320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATGTTTGTGTTTAAT+AGG - chr1.3:72823479-72823498 MS.gene91320:intron 15.0%
!!! GTTGTTTTTGTATATATATT+GGG - chr1.3:72822773-72822792 MS.gene91320:intron 15.0%
!! ATATATATACAAAAACAACG+TGG + chr1.3:72822772-72822791 None:intergenic 20.0%
!! TATAATGTAGTGTTCAAATT+TGG - chr1.3:72823431-72823450 MS.gene91320:CDS 20.0%
!!! AATTGATTTGTTTATCCTTT+TGG - chr1.3:72822822-72822841 MS.gene91320:intron 20.0%
!!! CGTTGTTTTTGTATATATAT+TGG - chr1.3:72822772-72822791 MS.gene91320:intron 20.0%
!!! TAAAATTCAACCTTCTTTTT+TGG + chr1.3:72822992-72823011 None:intergenic 20.0%
! TAGAATGTTTGTGAGTTTAA+TGG - chr1.3:72823046-72823065 MS.gene91320:CDS 25.0%
! TCATGTTTACAAGTCATTTA+TGG - chr1.3:72823166-72823185 MS.gene91320:CDS 25.0%
! TTTGTATATATATTGGGAGA+GGG - chr1.3:72822779-72822798 MS.gene91320:intron 25.0%
!! ATTTAACACCTTTTTGTCAA+AGG - chr1.3:72822925-72822944 MS.gene91320:intron 25.0%
!! TTTAACACCTTTTTGTCAAA+GGG - chr1.3:72822926-72822945 MS.gene91320:intron 25.0%
!! TTTTGTATATATATTGGGAG+AGG - chr1.3:72822778-72822797 MS.gene91320:intron 25.0%
!!! AGTTTTAGTTTTGAGCTTAA+TGG - chr1.3:72823108-72823127 MS.gene91320:CDS 25.0%
!!! GGATATTTTTCAAGATAAGA+AGG - chr1.3:72822681-72822700 MS.gene91320:intron 25.0%
CATATTGAATACGTACAGAA+AGG - chr1.3:72823190-72823209 MS.gene91320:CDS 30.0%
TCATTTCTTTATTGCTCCTT+TGG + chr1.3:72822508-72822527 None:intergenic 30.0%
TGTTTGTGTTTAATAGGACA+AGG - chr1.3:72823485-72823504 MS.gene91320:intron 30.0%
TTAATCAAACCTGAGATTGT+TGG + chr1.3:72822463-72822482 None:intergenic 30.0%
TTGAGCTTGATCTTATCATA+TGG + chr1.3:72822547-72822566 None:intergenic 30.0%
TTGTATATATATTGGGAGAG+GGG - chr1.3:72822780-72822799 MS.gene91320:intron 30.0%
! ACCTCAAACATATTGTTGTT+GGG + chr1.3:72823576-72823595 None:intergenic 30.0%
! AGATAAGAAGGAAAAGTATG+AGG - chr1.3:72822693-72822712 MS.gene91320:intron 30.0%
!! ATTTGTAGAGTTGATACTGA+TGG - chr1.3:72822848-72822867 MS.gene91320:CDS 30.0%
!! TTCTCTAAGATCAAGTTTCA+AGG - chr1.3:72822584-72822603 MS.gene91320:intron 30.0%
AACTCTACAAATGCACCAAA+AGG + chr1.3:72822840-72822859 None:intergenic 35.0%
AAGATCAAGTTTCAAGGTCT+GGG - chr1.3:72822590-72822609 MS.gene91320:intron 35.0%
AAGTCATAGAGACTTGATCT+TGG - chr1.3:72822901-72822920 MS.gene91320:CDS 35.0%
AGTCATAGAGACTTGATCTT+GGG - chr1.3:72822902-72822921 MS.gene91320:CDS 35.0%
ATAAACCCTTCAAGAAGATC+CGG + chr1.3:72823388-72823407 None:intergenic 35.0%
CACAACAATATGTCAAGTAC+TGG + chr1.3:72823308-72823327 None:intergenic 35.0%
GACCTCAAACATATTGTTGT+TGG + chr1.3:72823577-72823596 None:intergenic 35.0%
GAGTTATGTGAACACGATAA+AGG - chr1.3:72823021-72823040 MS.gene91320:intron 35.0%
GTCAGGAAAATCTGTAATGT+TGG - chr1.3:72823260-72823279 MS.gene91320:intron 35.0%
TAAGATCAAGTTTCAAGGTC+TGG - chr1.3:72822589-72822608 MS.gene91320:intron 35.0%
TCCCAACAACAATATGTTTG+AGG - chr1.3:72823572-72823591 MS.gene91320:intron 35.0%
TGAAAGATTGCAAAGCACAA+AGG - chr1.3:72822731-72822750 MS.gene91320:intron 35.0%
! AAAGTATGAGGACTTTTTGG+AGG - chr1.3:72822705-72822724 MS.gene91320:intron 35.0%
!! AACAATATGTCAAGTACTGG+AGG + chr1.3:72823305-72823324 None:intergenic 35.0%
!! GGAAAAGTATGAGGACTTTT+TGG - chr1.3:72822702-72822721 MS.gene91320:intron 35.0%
!!! TCAACCTTCTTTTTTGGTTG+AGG + chr1.3:72822986-72823005 None:intergenic 35.0%
AATCATGATTGCACTTCTCC+AGG - chr1.3:72823339-72823358 MS.gene91320:CDS 40.0%
ACATACCTCTTTGTAGACCA+GGG + chr1.3:72823231-72823250 None:intergenic 40.0%
AGAAGGGCAAGGTTTACTTA+AGG - chr1.3:72823610-72823629 MS.gene91320:intron 40.0%
GAAACCGAGTCTGCATAAAA+AGG + chr1.3:72823136-72823155 None:intergenic 40.0%
GAAGGGCAAGGTTTACTTAA+GGG - chr1.3:72823611-72823630 MS.gene91320:CDS 40.0%
GATCAAGCTCAACATGATTG+TGG - chr1.3:72822555-72822574 MS.gene91320:CDS 40.0%
GCAACCTCAACCAAAAAAGA+AGG - chr1.3:72822979-72822998 MS.gene91320:intron 40.0%
TAAACCCTTCAAGAAGATCC+GGG + chr1.3:72823387-72823406 None:intergenic 40.0%
TACTTAGTGCTTAGAGCCAA+AGG - chr1.3:72822489-72822508 MS.gene91320:CDS 40.0%
TGATGCCTTAGCATATCTCA+AGG - chr1.3:72822651-72822670 MS.gene91320:intron 40.0%
! AGGTATGTGCTGTTATAGTC+AGG - chr1.3:72823243-72823262 MS.gene91320:intron 40.0%
! AGTTTTTGACCATCTCGCTT+CGG + chr1.3:72822622-72822641 None:intergenic 40.0%
! GGTTCCTTTTTATGCAGACT+CGG - chr1.3:72823129-72823148 MS.gene91320:CDS 40.0%
! TTTATGCAGACTCGGTTTCA+GGG - chr1.3:72823137-72823156 MS.gene91320:CDS 40.0%
!! GTTCAAATTTGGTGCTGTGT+GGG - chr1.3:72823442-72823461 MS.gene91320:CDS 40.0%
!! TGTTCAAATTTGGTGCTGTG+TGG - chr1.3:72823441-72823460 MS.gene91320:CDS 40.0%
!! TTCAAATTTGGTGCTGTGTG+GGG - chr1.3:72823443-72823462 MS.gene91320:CDS 40.0%
!! TTTTATGCAGACTCGGTTTC+AGG - chr1.3:72823136-72823155 MS.gene91320:CDS 40.0%
AGTCGATAAGAAGAAGGGCA+AGG - chr1.3:72823599-72823618 MS.gene91320:intron 45.0%
CAAACCTGAGATTGTTGGCA+CGG + chr1.3:72822458-72822477 None:intergenic 45.0%
CAACCCATACTCCTCAAAAC+AGG + chr1.3:72823523-72823542 None:intergenic 45.0%
CACATACCTCTTTGTAGACC+AGG + chr1.3:72823232-72823251 None:intergenic 45.0%
CAGACGAAAGGGTAATCTCA+TGG + chr1.3:72822952-72822971 None:intergenic 45.0%
CCATACTCCTCAAAACAGGA+CGG + chr1.3:72823519-72823538 None:intergenic 45.0%
CTCATGGCCCTTTGACAAAA+AGG + chr1.3:72822936-72822955 None:intergenic 45.0%
GGCAAGGTTTACTTAAGGGA+CGG - chr1.3:72823615-72823634 MS.gene91320:CDS 45.0%
GTCCGAGTCGATAAGAAGAA+GGG - chr1.3:72823594-72823613 MS.gene91320:intron 45.0%
GTGTTTAATAGGACAAGGCC+AGG - chr1.3:72823490-72823509 MS.gene91320:intron 45.0%
TATCACCCTGGTCTACAAAG+AGG - chr1.3:72823223-72823242 MS.gene91320:intron 45.0%
TCTTTGTAGACCAGGGTGAT+AGG + chr1.3:72823224-72823243 None:intergenic 45.0%
TGAGATTACCCTTTCGTCTG+AGG - chr1.3:72822952-72822971 MS.gene91320:intron 45.0%
TGCCTTAGCATATCTCAAGG+CGG - chr1.3:72822654-72822673 MS.gene91320:intron 45.0%
TTGCTCATCCTCAGACGAAA+GGG + chr1.3:72822963-72822982 None:intergenic 45.0%
! TGCCCTTCTTCTTATCGACT+CGG + chr1.3:72823599-72823618 None:intergenic 45.0%
!! TGGTGTCGTTGAAAGAGTGA+AGG - chr1.3:72822868-72822887 MS.gene91320:CDS 45.0%
!!! CGTCCTGTTTTGAGGAGTAT+GGG - chr1.3:72823517-72823536 MS.gene91320:intron 45.0%
AACCACCCGGATCTTCTTGA+AGG - chr1.3:72823379-72823398 MS.gene91320:CDS 50.0%
ACCACCCGGATCTTCTTGAA+GGG - chr1.3:72823380-72823399 MS.gene91320:CDS 50.0%
AGCATATCTCAAGGCGGTCA+AGG - chr1.3:72822660-72822679 MS.gene91320:intron 50.0%
GACCGCCTTGAGATATGCTA+AGG + chr1.3:72822659-72822678 None:intergenic 50.0%
GGAAAGTAAGCCTATCACCC+TGG - chr1.3:72823211-72823230 MS.gene91320:intron 50.0%
GGTCCGAGTCGATAAGAAGA+AGG - chr1.3:72823593-72823612 MS.gene91320:intron 50.0%
GTTGCTCATCCTCAGACGAA+AGG + chr1.3:72822964-72822983 None:intergenic 50.0%
TCTACCGTGCCAACAATCTC+AGG - chr1.3:72822451-72822470 MS.gene91320:CDS 50.0%
TGCACTCTTCCAAAACCACC+CGG - chr1.3:72823366-72823385 MS.gene91320:CDS 50.0%
! CAAGAAGATCCGGGTGGTTT+TGG + chr1.3:72823378-72823397 None:intergenic 50.0%
! TTTTGACCATCTCGCTTCGG+CGG + chr1.3:72822619-72822638 None:intergenic 50.0%
!!! CCGTCCTGTTTTGAGGAGTA+TGG - chr1.3:72823516-72823535 MS.gene91320:intron 50.0%
ACCCTTCAAGAAGATCCGGG+TGG + chr1.3:72823384-72823403 None:intergenic 55.0%
CTCAAAACAGGACGGCATCC+TGG + chr1.3:72823511-72823530 None:intergenic 55.0%
! CAGGATGCCGTCCTGTTTTG+AGG - chr1.3:72823509-72823528 MS.gene91320:intron 55.0%
! TTTGGAAGAGTGCAGCAGCC+TGG + chr1.3:72823360-72823379 None:intergenic 55.0%
!! TGGTGCTGTGTGGGGCTGTA+GGG - chr1.3:72823451-72823470 MS.gene91320:CDS 60.0%
!! TTGGTGCTGTGTGGGGCTGT+AGG - chr1.3:72823450-72823469 MS.gene91320:CDS 60.0%
! GGTGCTGTGTGGGGCTGTAG+GGG - chr1.3:72823452-72823471 MS.gene91320:CDS 65.0%
GGGCAACCGCCGAAGCGAGA+TGG - chr1.3:72822610-72822629 MS.gene91320:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 72822436 72823647 72822436 ID=MS.gene91320
chr1.3 mRNA 72822436 72823647 72822436 ID=MS.gene91320.t1;Parent=MS.gene91320
chr1.3 exon 72823611 72823647 72823611 ID=MS.gene91320.t1.exon1;Parent=MS.gene91320.t1
chr1.3 CDS 72823611 72823647 72823611 ID=cds.MS.gene91320.t1;Parent=MS.gene91320.t1
chr1.3 exon 72823331 72823490 72823331 ID=MS.gene91320.t1.exon2;Parent=MS.gene91320.t1
chr1.3 CDS 72823331 72823490 72823331 ID=cds.MS.gene91320.t1;Parent=MS.gene91320.t1
chr1.3 exon 72823041 72823227 72823041 ID=MS.gene91320.t1.exon3;Parent=MS.gene91320.t1
chr1.3 CDS 72823041 72823227 72823041 ID=cds.MS.gene91320.t1;Parent=MS.gene91320.t1
chr1.3 exon 72822839 72822937 72822839 ID=MS.gene91320.t1.exon4;Parent=MS.gene91320.t1
chr1.3 CDS 72822839 72822937 72822839 ID=cds.MS.gene91320.t1;Parent=MS.gene91320.t1
chr1.3 exon 72822436 72822582 72822436 ID=MS.gene91320.t1.exon5;Parent=MS.gene91320.t1
chr1.3 CDS 72822436 72822582 72822436 ID=cds.MS.gene91320.t1;Parent=MS.gene91320.t1
Gene Sequence

>MS.gene91320

ATGAATTCTATAGACTCTACCGTGCCAACAATCTCAGGTTTGATTAAGATAAATACTTAGTGCTTAGAGCCAAAGGAGCAATAAAGAAATGAAAACATAATTCAGAAACCATATGATAAGATCAAGCTCAACATGATTGTGGTGTATATTCTCTAAGATCAAGTTTCAAGGTCTGGGCAACCGCCGAAGCGAGATGGTCAAAAACTGACTACTAATGATGCCTTAGCATATCTCAAGGCGGTCAAGGATATTTTTCAAGATAAGAAGGAAAAGTATGAGGACTTTTTGGAGGTTATGAAAGATTGCAAAGCACAAAGGTTTGATAATGTTGTACCACGTTGTTTTTGTATATATATTGGGAGAGGGGTTATGAATTTGTTAGTTGTAATTGATTTGTTTATCCTTTTGGTGCATTTGTAGAGTTGATACTGATGGTGTCGTTGAAAGAGTGAAGGAACTTTTTAGAAGTCATAGAGACTTGATCTTGGGATTTAACACCTTTTTGTCAAAGGGCCATGAGATTACCCTTTCGTCTGAGGATGAGCAACCTCAACCAAAAAAGAAGGTTGAATTTTATGAAGCTACGAGTTATGTGAACACGATAAAGGTTTAGAATGTTTGTGAGTTTAATGGATTCTCTTCATGCAGATTTGTTTGCAATGTAGAATTAATAGTTTTAGTTTTGAGCTTAATGGTTCCTTTTTATGCAGACTCGGTTTCAGGGCGATGTTCATGTTTACAAGTCATTTATGGACATATTGAATACGTACAGAAAGGAAAGTAAGCCTATCACCCTGGTCTACAAAGAGGTATGTGCTGTTATAGTCAGGAAAATCTGTAATGTTGGTTTTTTCTTTTTTTTATTTCCTCCAGTACTTGACATATTGTTGTGATACACATTTTAATCATGATTGCACTTCTCCAGGCTGCTGCACTCTTCCAAAACCACCCGGATCTTCTTGAAGGGTTTATTCATTTGTGTCGTGTTGATTGTCTATAATGTAGTGTTCAAATTTGGTGCTGTGTGGGGCTGTAGGGGTGTAATATAATGTTTGTGTTTAATAGGACAAGGCCAGGATGCCGTCCTGTTTTGAGGAGTATGGGTTGCATGTTGATTATTTTGTAATGTTACGTGATCCCAACAACAATATGTTTGAGGTCCGAGTCGATAAGAAGAAGGGCAAGGTTTACTTAAGGGACGGTTTGCTTTAG
Protein sequence

>MS.gene91320.t1

MNSIDSTVPTISDQVSRSGQPPKRDGQKLTTNDALAYLKAVKDIFQDKKEKYEDFLEVMKDCKAQRVDTDGVVERVKELFRSHRDLILGFNTFLSKGHEITLSSEDEQPQPKKKVEFYEATSYVNTIKTRFQGDVHVYKSFMDILNTYRKESKPITLVYKEDKARMPSCFEEYGLHVDYFVMLRDPNNNMFEVRVDKKKGKVYLRDGLL