AlfalfaGEDB | MS.gene91351

M. sativa cultivar XinJiangDaYe / MS.gene91351

KEGG: K11644
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91351.t1	KEH43987.1	91.4	163	14	0	1	163	1	163	5.50E-79	303.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91351.t1	Q9SRH9	43.0	151	80	2	13	157	54	204	1.4e-25	117.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91351.t1	A0A072VQC1	91.4	163	14	0	1	163	1	163	4.0e-79	303.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene91351.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91351.t1	MTR_1g105955	91.463	164	14	0	1	164	1	164	4.43e-111	315
MS.gene91351.t1	MTR_5g036670	45.395	152	76	2	13	157	40	191	2.93e-32	123
MS.gene91351.t1	MTR_5g036670	51.351	74	36	0	96	169	44	117	1.04e-16	78.2
MS.gene91351.t1	MTR_3g006150	45.806	155	74	3	13	160	5	156	3.59e-32	114
MS.gene91351.t1	MTR_3g006150	46.835	79	38	2	96	173	9	84	3.19e-12	62.4
MS.gene91351.t1	MTR_1g105960	52.632	114	35	1	17	130	2	96	4.07e-32	112
MS.gene91351.t1	MTR_1g105960	62.195	82	30	1	96	177	2	82	8.38e-27	99.0
MS.gene91351.t1	MTR_1g104960	38.953	172	97	2	5	168	2	173	2.53e-31	112
MS.gene91351.t1	MTR_1g104960	40.964	83	49	0	92	174	10	92	7.01e-12	61.6
MS.gene91351.t1	MTR_3g006065	47.742	155	71	4	13	160	5	156	5.57e-31	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91351.t1	AT1G24190	43.226	155	75	4	13	157	11	162	3.37e-31	120
MS.gene91351.t1	AT1G24190	55.882	68	30	0	96	163	15	82	8.29e-18	81.6
MS.gene91351.t1	AT1G24190	43.226	155	75	4	13	157	11	162	3.50e-31	120
MS.gene91351.t1	AT1G24190	55.882	68	30	0	96	163	15	82	8.20e-18	81.6
MS.gene91351.t1	AT1G24190	43.226	155	75	4	13	157	11	162	3.60e-31	120
MS.gene91351.t1	AT1G24190	55.882	68	30	0	96	163	15	82	8.36e-18	81.6
MS.gene91351.t1	AT3G01320	43.046	151	80	2	13	157	54	204	9.10e-31	119
MS.gene91351.t1	AT3G01320	55.405	74	33	0	96	169	58	131	2.47e-18	83.2
MS.gene91351.t1	AT3G01320	43.046	151	80	2	13	157	54	204	9.11e-31	119
MS.gene91351.t1	AT3G01320	55.405	74	33	0	96	169	58	131	2.47e-18	83.2

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Find 32 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACGAGTTTCAAGATG+AGG	0.637348	1.3:+72480395	MS.gene91351:CDS
AAAGGGAGCAAGTTTGATTA+TGG	0.329129	1.3:+72480558	MS.gene91351:CDS
AAATGTTATGATGGATTTCA+AGG	0.397261	1.3:+72480440	MS.gene91351:CDS
AAGTTGAGTTTCAATATGAG+AGG	0.581901	1.3:+72480634	MS.gene91351:CDS
AGAAGCAATAGCATATGTCG+AGG	0.681954	1.3:+72480368	MS.gene91351:CDS
AGAAGCAGAAGACATGGAAG+TGG	0.582532	1.3:+72480905	MS.gene91351:CDS
AGAGTGAAGGAACTATTTAA+AGG	0.356818	1.3:+72480732	MS.gene91351:CDS
AGATTGAAGGATTTGTTTAA+AGG	0.287517	1.3:+72480495	MS.gene91351:CDS
AGGGCATACAAATTTAACGT+TGG	0.547701	1.3:+72480752	MS.gene91351:CDS
AGTTGAGTTTCAATATGAGA+GGG	0.554210	1.3:+72480635	MS.gene91351:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTGAGTTTCAATATGAG+AGG	+	chr1.3:72480634-72480653	MS.gene91351:CDS	30.0%
AGAGTGAAGGAACTATTTAA+AGG	+	chr1.3:72480732-72480751	MS.gene91351:CDS	30.0%
AGTTGAGTTTCAATATGAGA+GGG	+	chr1.3:72480635-72480654	MS.gene91351:CDS	30.0%
GAGTGAAGGAACTATTTAAA+GGG	+	chr1.3:72480733-72480752	MS.gene91351:CDS	30.0%
AAAAGACGAGTTTCAAGATG+AGG	+	chr1.3:72480395-72480414	MS.gene91351:CDS	35.0%
AAAGGGAGCAAGTTTGATTA+TGG	+	chr1.3:72480558-72480577	MS.gene91351:CDS	35.0%
AGGGCATACAAATTTAACGT+TGG	+	chr1.3:72480752-72480771	MS.gene91351:CDS	35.0%
GAAAGCTATTAAGGATTGCA+AGG	+	chr1.3:72480677-72480696	MS.gene91351:CDS	35.0%
GATTATGGCATAGATCCATT+TGG	+	chr1.3:72480573-72480592	MS.gene91351:CDS	35.0%
GCTATGAGAATTGATACAAG+TGG	+	chr1.3:72480462-72480481	MS.gene91351:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	72480324	72480932	72480324	ID=MS.gene91351
chr1.3	mRNA	72480324	72480932	72480324	ID=MS.gene91351.t1;Parent=MS.gene91351
chr1.3	exon	72480324	72480932	72480324	ID=MS.gene91351.t1.exon1;Parent=MS.gene91351.t1
chr1.3	CDS	72480324	72480932	72480324	ID=cds.MS.gene91351.t1;Parent=MS.gene91351.t1

Gene Sequence

>MS.gene91351

ATGTCCAGCGATAACATGTCTCATGGAGAAGTTCCCACGATGGAAGAAGCAATAGCATATGTCGAGGCTGTAAAAGACGAGTTTCAAGATGAGGTAGAAAAGTATGATGAATTTTTAAATGTTATGATGGATTTCAAGGCTATGAGAATTGATACAAGTGGTGTCATAGCAAGATTGAAGGATTTGTTTAAAGGGCACACAAATTTAATTTTAGGATTCAACATCTTCGTGCCAAAAGGGAGCAAGTTTGATTATGGCATAGATCCATTTGGAGTGTTGGAAGAAGCAAAAGCATATGTCCATGCAGTAAAAGTTGAGTTTCAATATGAGAGGGAAAAGTATGATGAATTTGTGAAAGCTATTAAGGATTGCAAGGCTGAGAGAATTGATACAAAATGTCTCGCGAAAAGAGTGAAGGAACTATTTAAAGGGCATACAAATTTAACGTTGGGATTTAACAACTTTCTGCCAAAGAAATATCAAATCAGTACTGATGATGGTGATGATGATGATGCTGAAGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGACTGACGTAGAAGCAGAAGACATGGAAGTGGATTAG

Protein sequence

>MS.gene91351.t1

MSSDNMSHGEVPTMEEAIAYVEAVKDEFQDEVEKYDEFLNVMMDFKAMRIDTSGVIARLKDLFKGHTNLILGFNIFVPKGSKFDYGIDPFGVLEEAKAYVHAVKVEFQYEREKYDEFVKAIKDCKAERIDTKCLAKRVKELFKGHTNLTLGFNNFLPKKYQISTDDGDDDDAEDDDDDDDDDDDDDDDDDETDVEAEDMEVD