AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91356

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91356.t1 MTR_2g105290 74.706 170 43 0 1 170 1 170 9.98e-92 265
MS.gene91356.t1 MTR_8g086290 72.455 167 46 0 1 167 1 167 1.30e-86 252
MS.gene91356.t1 MTR_4g127140 71.111 180 42 2 1 170 1 180 8.95e-79 232
MS.gene91356.t1 MTR_7g028448 77.019 161 29 2 1 161 1 153 1.28e-75 224
MS.gene91356.t1 MTR_4g036915 77.019 161 29 2 1 161 1 153 1.28e-75 224
MS.gene91356.t1 MTR_1g106070 40.588 170 91 2 8 170 5 171 7.88e-41 136
MS.gene91356.t1 MTR_3g052920 41.765 170 89 2 8 170 5 171 4.84e-40 135
MS.gene91356.t1 MTR_1g105910 41.176 170 90 2 8 170 5 171 5.71e-40 135
MS.gene91356.t1 MTR_1g105920 40.588 170 91 2 8 170 5 171 8.25e-40 135
MS.gene91356.t1 MTR_8g043650 41.176 170 90 2 8 170 5 171 1.13e-39 134
MS.gene91356.t1 MTR_1g012570 41.176 170 90 2 8 170 5 171 2.95e-39 134
MS.gene91356.t1 MTR_2g030740 40.588 170 91 2 8 170 5 171 4.74e-39 133
MS.gene91356.t1 MTR_3g080940 40.828 169 96 1 6 170 3 171 5.05e-38 129
MS.gene91356.t1 MTR_1g108510 42.262 168 81 5 8 165 5 166 4.70e-35 122
MS.gene91356.t1 MTR_0121s0080 41.772 158 82 2 8 158 5 159 1.31e-34 121
MS.gene91356.t1 MTR_3g030770 40.606 165 88 2 8 165 5 166 3.59e-34 120
MS.gene91356.t1 MTR_1g108580 39.394 165 90 2 8 165 5 166 4.04e-33 117
MS.gene91356.t1 MTR_3g052870 44.800 125 59 2 8 125 5 126 2.85e-32 115
MS.gene91356.t1 MTR_1g105905 38.854 157 86 2 21 170 1 154 2.90e-32 115
MS.gene91356.t1 MTR_5g053390 38.953 172 91 3 8 170 5 171 6.81e-32 114
MS.gene91356.t1 MTR_2g093190 40.491 163 91 2 8 165 5 166 2.81e-31 113
MS.gene91356.t1 MTR_1g077360 38.788 165 91 2 8 165 5 166 2.31e-30 110
MS.gene91356.t1 MTR_2g085250 37.931 174 90 4 8 170 5 171 3.90e-30 110
MS.gene91356.t1 MTR_2g085280 37.931 174 90 4 8 170 5 171 3.99e-30 110
MS.gene91356.t1 MTR_5g045560 36.364 165 101 1 8 168 5 169 2.09e-29 108
MS.gene91356.t1 MTR_1g075600 37.342 158 95 1 8 161 5 162 1.93e-28 105
MS.gene91356.t1 MTR_0121s0100 45.299 117 54 2 8 117 5 118 1.87e-27 100
MS.gene91356.t1 MTR_5g055100 60.274 73 29 0 8 80 5 77 1.64e-26 100
MS.gene91356.t1 MTR_3g030780 58.904 73 30 0 8 80 5 77 8.42e-26 96.3
MS.gene91356.t1 MTR_8g046350 39.231 130 76 3 12 139 2 130 1.34e-25 96.7
MS.gene91356.t1 MTR_1g047550 41.748 103 58 1 12 112 2 104 8.03e-24 92.4
MS.gene91356.t1 MTR_7g062350 37.671 146 81 2 28 166 37 179 1.26e-23 93.6
MS.gene91356.t1 MTR_8g079502 41.964 112 59 2 12 119 2 111 2.25e-23 91.3
MS.gene91356.t1 MTR_4g131030 36.567 134 81 3 12 142 2 134 3.19e-23 91.7
MS.gene91356.t1 MTR_8g051580 38.333 120 71 2 12 128 2 121 5.96e-23 90.1
MS.gene91356.t1 MTR_8g022970 36.025 161 96 4 4 161 14 170 1.22e-22 89.7
MS.gene91356.t1 MTR_1g054265 41.346 104 59 1 12 113 2 105 5.71e-22 87.4
MS.gene91356.t1 MTR_3g067875 60.714 56 22 0 21 76 1 56 2.66e-21 82.8
MS.gene91356.t1 MTR_4g094632 42.708 96 54 1 12 107 2 96 4.75e-21 84.7
MS.gene91356.t1 MTR_3g109930 38.732 142 84 3 23 161 12 153 1.30e-20 84.0
MS.gene91356.t1 MTR_1g063160 41.860 86 48 1 12 97 2 85 3.07e-20 83.2
MS.gene91356.t1 MTR_4g094638 40.659 91 54 0 12 102 2 92 5.44e-20 82.4
MS.gene91356.t1 MTR_3g067870 51.429 70 33 1 10 79 75 143 7.00e-20 81.6
MS.gene91356.t1 MTR_1g108500 54.930 71 29 1 8 78 96 163 7.96e-19 82.0
MS.gene91356.t1 MTR_3g437790 35.000 140 82 3 29 161 30 167 1.78e-18 78.6
MS.gene91356.t1 MTR_0003s0590 35.849 159 91 2 12 170 2 149 2.41e-17 77.0
MS.gene91356.t1 MTR_3g005530 49.296 71 36 0 12 82 2 72 3.48e-17 76.3
MS.gene91356.t1 MTR_4g102530 35.526 152 86 4 15 163 5 147 3.52e-17 75.9
MS.gene91356.t1 MTR_5g066180 48.485 66 34 0 14 79 4 69 3.64e-17 76.3
MS.gene91356.t1 MTR_4g093970 47.619 84 40 2 14 94 30 112 3.69e-17 76.3
MS.gene91356.t1 MTR_1g053070 43.529 85 48 0 12 96 2 86 8.72e-17 75.5
MS.gene91356.t1 MTR_1g029670 48.438 64 33 0 12 75 2 65 1.15e-16 73.9
MS.gene91356.t1 MTR_8g033270 50.000 68 34 0 12 79 2 69 1.21e-16 75.1
MS.gene91356.t1 MTR_3g067910 56.140 57 25 0 24 80 2 58 1.37e-16 71.6
MS.gene91356.t1 MTR_1g101970 35.366 164 88 7 12 168 2 154 1.63e-16 73.6
MS.gene91356.t1 MTR_8g087860 40.000 110 58 2 4 111 10 113 1.97e-16 74.3
MS.gene91356.t1 MTR_3g088615 48.438 64 33 0 12 75 2 65 1.98e-16 73.2
MS.gene91356.t1 MTR_2g009890 39.604 101 39 1 12 112 2 80 2.19e-16 74.7
MS.gene91356.t1 MTR_8g033220 39.815 108 62 2 15 119 5 112 2.28e-16 73.9
MS.gene91356.t1 MTR_8g033220 39.815 108 62 2 15 119 5 112 2.40e-16 73.9
MS.gene91356.t1 MTR_3g452380 40.000 90 54 0 8 97 13 102 2.74e-16 73.9
MS.gene91356.t1 MTR_4g109810 34.043 141 75 4 12 150 2 126 3.35e-16 73.9
MS.gene91356.t1 MTR_2g017865 43.750 80 45 0 3 82 8 87 3.50e-16 73.9
MS.gene91356.t1 MTR_4g084740 48.571 70 35 1 12 80 2 71 4.23e-16 74.7
MS.gene91356.t1 MTR_3g113030 53.333 60 28 0 15 74 5 64 6.13e-16 72.8
MS.gene91356.t1 MTR_5g032520 51.515 66 32 0 14 79 4 69 7.39e-16 72.8
MS.gene91356.t1 MTR_5g032150 51.515 66 32 0 14 79 4 69 7.66e-16 72.8
MS.gene91356.t1 MTR_3g102570 52.857 70 32 1 12 80 2 71 7.98e-16 73.6
MS.gene91356.t1 MTR_5g066960 51.786 56 27 0 12 67 2 57 1.06e-15 68.2
MS.gene91356.t1 MTR_6g464720 33.529 170 92 6 12 172 2 159 1.08e-15 72.4
MS.gene91356.t1 MTR_5g031000 38.710 93 54 1 12 104 2 91 2.48e-15 71.2
MS.gene91356.t1 MTR_5g021270 48.611 72 35 1 12 81 2 73 2.50e-15 71.2
MS.gene91356.t1 MTR_4g109830 47.826 69 35 1 12 79 2 70 2.53e-15 71.2
MS.gene91356.t1 MTR_5g021270 48.611 72 35 1 12 81 2 73 2.57e-15 71.2
MS.gene91356.t1 MTR_1g038300 48.571 70 34 1 12 79 2 71 2.64e-15 71.2
MS.gene91356.t1 MTR_5g031000 38.710 93 54 1 12 104 2 91 2.85e-15 71.2
MS.gene91356.t1 MTR_7g075870 36.364 110 62 2 15 119 5 111 3.73e-15 70.5
MS.gene91356.t1 MTR_2g461710 55.556 54 24 0 12 65 2 55 4.20e-15 66.6
MS.gene91356.t1 MTR_2g045020 35.366 164 88 6 3 161 18 168 4.64e-15 69.7
MS.gene91356.t1 MTR_7g075870 56.604 53 23 0 15 67 5 57 5.07e-15 70.1
MS.gene91356.t1 MTR_6g015975 42.553 94 49 3 12 101 2 94 5.54e-15 70.5
MS.gene91356.t1 MTR_5g046870 50.000 66 31 1 12 75 2 67 6.76e-15 67.4
MS.gene91356.t1 MTR_8g066260 52.632 57 27 0 12 68 2 58 7.97e-15 70.1
MS.gene91356.t1 MTR_7g016630 33.333 141 76 5 12 150 2 126 1.17e-14 69.7
MS.gene91356.t1 MTR_1g075570 35.246 122 69 2 21 142 1 112 1.27e-14 68.2
MS.gene91356.t1 MTR_7g016600 53.571 56 26 0 12 67 2 57 1.30e-14 69.7
MS.gene91356.t1 MTR_3g084980 55.357 56 25 0 12 67 2 57 1.43e-14 69.3
MS.gene91356.t1 MTR_8g097090 53.571 56 26 0 12 67 2 57 3.12e-14 68.6
MS.gene91356.t1 MTR_4g093030 34.188 117 69 3 12 126 2 112 3.21e-14 67.0
MS.gene91356.t1 MTR_5g046790 32.143 140 77 5 12 148 2 126 5.47e-14 67.4
MS.gene91356.t1 MTR_7g075850 53.571 56 26 0 12 67 2 57 5.66e-14 67.8
MS.gene91356.t1 MTR_1g041615 63.636 44 16 0 25 68 19 62 1.34e-12 62.0
MS.gene91356.t1 MTR_4g036050 25.466 161 112 3 15 173 5 159 3.41e-12 62.0
MS.gene91356.t1 MTR_4g036050 38.235 68 41 1 15 81 5 72 4.69e-12 61.6
MS.gene91356.t1 MTR_4g036050 38.235 68 41 1 15 81 5 72 4.95e-12 62.0
MS.gene91356.t1 MTR_4g036050 38.235 68 41 1 15 81 5 72 5.31e-12 61.6
MS.gene91356.t1 MTR_4g108720 50.000 52 26 0 12 63 2 53 6.55e-12 62.8
MS.gene91356.t1 MTR_5g041650 42.373 59 33 1 12 69 39 97 3.47e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91356.t1 AT5G60440 41.772 158 85 2 8 158 3 160 5.24e-35 124
MS.gene91356.t1 AT2G24840 37.975 158 93 4 10 162 61 218 1.73e-30 112
MS.gene91356.t1 AT1G65360 44.444 135 70 3 8 138 3 136 6.55e-30 109
MS.gene91356.t1 AT4G36590 36.145 166 96 3 8 163 3 168 1.34e-26 101
MS.gene91356.t1 AT1G01530 49.438 89 40 1 8 91 3 91 8.27e-25 96.7
MS.gene91356.t1 AT2G34440 32.727 165 103 4 12 171 2 163 9.89e-23 89.4
MS.gene91356.t1 AT3G66656 46.875 96 50 1 12 107 2 96 5.31e-21 85.1
MS.gene91356.t1 AT3G04100 33.735 166 94 5 8 161 10 171 5.62e-21 85.9
MS.gene91356.t1 AT5G10140 43.119 109 55 3 12 119 2 104 1.08e-19 81.6
MS.gene91356.t1 AT1G28460 34.132 167 99 4 8 165 4 168 1.24e-19 81.6
MS.gene91356.t1 AT5G10140 43.119 109 55 3 12 119 2 104 2.11e-19 81.3
MS.gene91356.t1 AT5G10140 43.119 109 55 3 12 119 2 104 2.67e-19 80.9
MS.gene91356.t1 AT5G10140 43.119 109 55 3 12 119 2 104 2.83e-19 81.3
MS.gene91356.t1 AT1G72350 31.373 153 76 3 12 164 43 166 2.84e-19 81.6
MS.gene91356.t1 AT4G09960 33.540 161 90 5 12 170 2 147 7.15e-19 80.9
MS.gene91356.t1 AT4G09960 33.540 161 90 5 12 170 3 148 7.28e-19 80.9
MS.gene91356.t1 AT4G09960 33.540 161 90 5 12 170 12 157 1.01e-18 80.5
MS.gene91356.t1 AT4G09960 33.540 161 90 5 12 170 28 173 1.21e-18 80.5
MS.gene91356.t1 AT3G54340 56.667 60 26 0 15 74 5 64 1.39e-18 80.1
MS.gene91356.t1 AT4G09960 36.879 141 72 5 12 150 2 127 3.14e-18 79.0
MS.gene91356.t1 AT2G45660 34.559 136 76 2 15 150 5 127 4.21e-18 77.0
MS.gene91356.t1 AT5G51870 55.224 67 30 0 15 81 5 71 4.59e-18 78.2
MS.gene91356.t1 AT5G51870 52.778 72 34 0 15 86 5 76 5.05e-18 77.4
MS.gene91356.t1 AT4G09960 34.161 161 89 5 12 170 97 242 6.58e-18 79.7
MS.gene91356.t1 AT4G18960 31.953 169 94 4 9 173 15 166 7.13e-18 78.6
MS.gene91356.t1 AT4G22950 34.307 137 74 2 15 150 5 126 7.25e-18 76.6
MS.gene91356.t1 AT5G51870 50.633 79 39 0 8 86 21 99 7.54e-18 77.4
MS.gene91356.t1 AT5G13790 48.193 83 41 1 12 94 2 82 1.24e-17 78.2
MS.gene91356.t1 AT5G51870 49.383 81 41 0 1 81 1 81 1.31e-17 77.4
MS.gene91356.t1 AT5G51870 55.224 67 30 0 15 81 5 71 1.33e-17 77.0
MS.gene91356.t1 AT2G45660 34.559 136 76 2 15 150 5 127 1.34e-17 77.0
MS.gene91356.t1 AT4G24540 56.923 65 28 0 15 79 5 69 1.52e-17 77.0
MS.gene91356.t1 AT1G29962 31.977 172 99 5 8 165 4 171 1.55e-17 76.3
MS.gene91356.t1 AT1G77980 48.571 70 35 1 12 80 2 71 1.76e-17 78.6
MS.gene91356.t1 AT4G22950 34.307 137 74 2 15 150 5 126 2.11e-17 76.6
MS.gene91356.t1 AT4G22950 34.307 137 74 2 15 150 5 126 2.11e-17 76.6
MS.gene91356.t1 AT4G37940 44.595 74 41 0 12 85 2 75 2.36e-17 76.3
MS.gene91356.t1 AT4G37940 44.595 74 41 0 12 85 2 75 2.53e-17 76.6
MS.gene91356.t1 AT1G77950 48.571 70 35 1 12 80 2 71 2.70e-17 77.0
MS.gene91356.t1 AT1G77950 48.571 70 35 1 12 80 2 71 2.70e-17 77.0
MS.gene91356.t1 AT1G77950 48.571 70 35 1 12 80 2 71 2.70e-17 77.0
MS.gene91356.t1 AT1G77950 48.571 70 35 1 12 80 2 71 2.70e-17 77.0
MS.gene91356.t1 AT3G57230 40.476 84 48 1 12 93 2 85 3.60e-17 74.3
MS.gene91356.t1 AT2G42830 29.586 169 98 5 9 173 14 165 3.64e-17 76.6
MS.gene91356.t1 AT2G22540 62.963 54 20 0 14 67 4 57 3.69e-17 76.3
MS.gene91356.t1 AT2G22540 62.963 54 20 0 14 67 4 57 3.69e-17 76.3
MS.gene91356.t1 AT2G42830 29.586 169 98 5 9 173 14 165 3.70e-17 76.6
MS.gene91356.t1 AT4G37940 44.595 74 41 0 12 85 2 75 4.86e-17 74.7
MS.gene91356.t1 AT5G23260 28.659 164 100 4 6 164 12 163 4.91e-17 76.6
MS.gene91356.t1 AT1G22130 48.571 70 35 1 12 80 2 71 5.58e-17 77.0
MS.gene91356.t1 AT5G51860 48.611 72 37 0 15 86 5 76 6.89e-17 75.1
MS.gene91356.t1 AT2G22630 45.946 74 40 0 12 85 2 75 8.41e-17 75.1
MS.gene91356.t1 AT2G22630 45.946 74 40 0 12 85 2 75 8.41e-17 75.1
MS.gene91356.t1 AT5G51860 36.111 144 72 5 15 154 5 132 8.44e-17 74.7
MS.gene91356.t1 AT2G22540 63.462 52 19 0 14 65 4 55 8.50e-17 75.5
MS.gene91356.t1 AT5G13790 51.351 74 34 1 12 85 2 73 9.46e-17 75.9
MS.gene91356.t1 AT1G28450 32.530 166 98 5 8 161 4 167 1.14e-16 73.9
MS.gene91356.t1 AT5G23260 29.193 161 97 4 6 161 12 160 1.18e-16 75.5
MS.gene91356.t1 AT3G57230 40.476 84 48 1 12 93 2 85 1.46e-16 74.7
MS.gene91356.t1 AT3G57230 40.476 84 48 1 12 93 2 85 1.46e-16 74.7
MS.gene91356.t1 AT5G23260 29.114 158 95 4 12 164 2 147 2.10e-16 74.7
MS.gene91356.t1 AT5G23260 29.299 157 94 4 12 163 2 146 2.12e-16 74.3
MS.gene91356.t1 AT2G45650 48.529 68 35 0 12 79 2 69 2.40e-16 74.3
MS.gene91356.t1 AT5G62165 45.333 75 41 0 15 89 5 79 2.51e-16 71.2
MS.gene91356.t1 AT5G62165 37.838 111 59 2 15 119 5 111 2.88e-16 72.0
MS.gene91356.t1 AT5G62165 37.838 111 59 2 15 119 5 111 2.88e-16 72.0
MS.gene91356.t1 AT5G62165 37.838 111 59 2 15 119 5 111 2.88e-16 72.0
MS.gene91356.t1 AT5G62165 37.838 111 59 2 15 119 5 111 2.88e-16 72.0
MS.gene91356.t1 AT5G62165 37.838 111 59 2 15 119 5 111 2.88e-16 72.0
MS.gene91356.t1 AT5G62165 45.333 75 41 0 15 89 5 79 3.05e-16 72.0
MS.gene91356.t1 AT5G62165 45.333 75 41 0 15 89 5 79 3.05e-16 72.0
MS.gene91356.t1 AT5G62165 45.333 75 41 0 15 89 5 79 3.05e-16 72.0
MS.gene91356.t1 AT3G58780 28.736 174 103 5 4 173 9 165 3.40e-16 73.9
MS.gene91356.t1 AT3G58780 28.736 174 103 5 4 173 15 171 3.76e-16 73.9
MS.gene91356.t1 AT3G57390 50.000 68 34 0 12 79 2 69 4.07e-16 73.6
MS.gene91356.t1 AT3G58780 34.677 124 65 4 4 123 9 120 7.39e-16 73.6
MS.gene91356.t1 AT4G11880 53.448 58 27 0 15 72 5 62 8.41e-16 71.6
MS.gene91356.t1 AT4G11880 53.448 58 27 0 15 72 5 62 8.41e-16 71.6
MS.gene91356.t1 AT5G15800 41.489 94 51 2 12 101 2 95 8.66e-16 72.8
MS.gene91356.t1 AT5G62165 37.838 111 59 2 15 119 5 111 1.23e-15 71.6
MS.gene91356.t1 AT5G62165 37.838 111 59 2 15 119 5 111 1.23e-15 71.6
MS.gene91356.t1 AT3G57390 50.000 68 34 0 12 79 2 69 1.31e-15 72.4
MS.gene91356.t1 AT3G02310 41.489 94 51 2 12 101 2 95 1.55e-15 71.2
MS.gene91356.t1 AT5G62165 37.838 111 59 2 15 119 5 111 1.55e-15 71.6
MS.gene91356.t1 AT5G62165 37.838 111 59 2 15 119 5 111 1.55e-15 71.6
MS.gene91356.t1 AT5G62165 37.838 111 59 2 15 119 5 111 1.55e-15 71.6
MS.gene91356.t1 AT3G58780 49.231 65 33 0 4 68 9 73 1.67e-15 72.0
MS.gene91356.t1 AT3G58780 49.231 65 33 0 4 68 9 73 1.89e-15 72.4
MS.gene91356.t1 AT3G30260 28.221 163 103 3 12 173 2 151 1.96e-15 72.0
MS.gene91356.t1 AT5G15800 41.489 94 51 2 12 101 2 95 2.14e-15 72.0
MS.gene91356.t1 AT4G11880 58.491 53 22 0 15 67 5 57 2.35e-15 71.2
MS.gene91356.t1 AT4G11880 58.491 53 22 0 15 67 5 57 2.35e-15 71.2
MS.gene91356.t1 AT2G14210 38.614 101 41 2 12 112 2 81 5.05e-15 70.5
MS.gene91356.t1 AT3G02310 41.489 94 51 2 12 101 2 95 5.80e-15 70.5
MS.gene91356.t1 AT2G14210 38.614 101 41 2 12 112 2 81 7.05e-15 70.1
MS.gene91356.t1 AT1G69120 50.877 57 28 0 12 68 2 58 7.09e-15 70.1
MS.gene91356.t1 AT5G20240 47.222 72 36 1 12 81 2 73 1.12e-14 67.8
MS.gene91356.t1 AT1G26310 52.632 57 27 0 12 68 2 58 1.22e-14 69.7
MS.gene91356.t1 AT5G60910 53.571 56 26 0 12 67 2 57 1.40e-14 69.3
MS.gene91356.t1 AT5G20240 47.222 72 36 1 12 81 2 73 1.55e-14 68.9
MS.gene91356.t1 AT2G03710 51.786 56 27 0 12 67 2 57 1.72e-14 68.2
MS.gene91356.t1 AT1G69120 51.786 56 27 0 12 67 2 57 2.30e-14 68.9
MS.gene91356.t1 AT1G24260 53.571 56 26 0 12 67 2 57 2.30e-14 68.9
MS.gene91356.t1 AT1G24260 53.571 56 26 0 12 67 2 57 2.35e-14 68.9
MS.gene91356.t1 AT2G03710 51.786 56 27 0 12 67 2 57 2.60e-14 68.9
MS.gene91356.t1 AT2G03710 51.786 56 27 0 12 67 2 57 2.62e-14 68.9
MS.gene91356.t1 AT1G24260 53.571 56 26 0 12 67 2 57 2.77e-14 68.6
MS.gene91356.t1 AT3G61120 42.857 70 40 0 12 81 2 71 3.39e-14 68.6
MS.gene91356.t1 AT5G65050 33.750 160 84 7 12 170 2 140 3.89e-14 67.0
MS.gene91356.t1 AT5G65060 30.723 166 81 5 12 170 2 140 4.42e-14 67.4
MS.gene91356.t1 AT1G71692 44.118 68 37 1 15 81 5 72 4.76e-14 67.4
MS.gene91356.t1 AT5G65060 30.723 166 81 5 12 170 2 140 5.98e-14 67.0
MS.gene91356.t1 AT5G65050 33.540 161 85 7 12 171 2 141 8.87e-14 66.2
MS.gene91356.t1 AT5G65050 33.540 161 85 7 12 171 2 141 9.94e-14 66.2
MS.gene91356.t1 AT5G65070 42.029 69 39 1 12 79 2 70 1.34e-13 65.1
MS.gene91356.t1 AT4G37435 51.786 56 27 0 12 67 2 57 2.12e-13 65.5
MS.gene91356.t1 AT5G65050 43.478 69 38 1 12 79 2 70 2.19e-13 65.5
MS.gene91356.t1 AT5G65070 42.029 69 39 1 12 79 2 70 2.35e-13 65.5
MS.gene91356.t1 AT1G47760 45.763 59 32 0 12 70 2 60 3.58e-13 64.7
MS.gene91356.t1 AT5G65060 33.645 107 48 2 12 117 2 86 3.61e-13 64.7
MS.gene91356.t1 AT5G65070 42.029 69 39 1 12 79 2 70 5.50e-13 65.1
MS.gene91356.t1 AT5G65070 42.029 69 39 1 12 79 2 70 6.41e-13 64.3
MS.gene91356.t1 AT5G38620 27.950 161 88 6 14 167 7 146 9.20e-13 65.5
MS.gene91356.t1 AT5G65070 45.614 57 31 0 12 68 2 58 1.34e-12 63.9
MS.gene91356.t1 AT1G69540 25.967 181 112 6 12 171 2 181 1.59e-12 64.7
MS.gene91356.t1 AT1G69540 25.967 181 112 6 12 171 2 181 2.63e-12 64.3
MS.gene91356.t1 AT1G18750 44.643 56 31 0 12 67 2 57 6.01e-12 63.2
MS.gene91356.t1 AT1G18750 44.643 56 31 0 12 67 2 57 7.43e-12 62.8
MS.gene91356.t1 AT1G18750 44.643 56 31 0 12 67 2 57 8.23e-12 62.8
MS.gene91356.t1 AT5G49490 36.709 79 46 1 8 82 41 119 1.40e-11 61.6
MS.gene91356.t1 AT1G31140 39.744 78 46 1 18 95 8 84 1.98e-11 60.5
MS.gene91356.t1 AT1G31140 39.744 78 46 1 18 95 8 84 2.01e-11 60.5
MS.gene91356.t1 AT1G17310 29.286 140 67 3 25 164 61 168 2.28e-11 60.5
MS.gene91356.t1 AT1G17310 29.286 140 67 3 25 164 72 179 3.03e-11 60.1
MS.gene91356.t1 AT2G03060 44.828 58 31 1 12 68 2 59 4.81e-11 60.5
MS.gene91356.t1 AT2G03060 44.828 58 31 1 12 68 2 59 4.81e-11 60.5
MS.gene91356.t1 AT2G03060 44.828 58 31 1 12 68 2 59 4.81e-11 60.5
MS.gene91356.t1 AT2G03060 44.828 58 31 1 12 68 2 59 5.38e-11 60.5
MS.gene91356.t1 AT5G49420 26.061 165 88 6 14 169 9 148 6.35e-11 60.1

Find 25 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGCTGATGTTGAAATTT+TGG 0.117908 1.3:+72428011 MS.gene91356:CDS
TGAAGAGCTTGAACAATTTA+TGG 0.162069 1.3:+72428089 MS.gene91356:CDS
TAAAGAGCAAGCTTCTTAAA+AGG 0.200612 1.3:+72428127 MS.gene91356:CDS
TAGCTATATCAAAGGAAATA+TGG 0.289414 1.3:+72427888 MS.gene91356:CDS
GTACAATTTCACCATGAATA+TGG 0.297892 1.3:+72427645 None:intergenic
TCTTTGGTTATCCATATTCA+TGG 0.348175 1.3:-72427656 None:intergenic
CAAAGGAAATATGGAATTTG+AGG 0.375897 1.3:+72427897 MS.gene91356:CDS
TTCCTTTGATATAGCTATTG+AGG 0.388895 1.3:-72427882 None:intergenic
GGCATTAAAGATGTTAGAGT+TGG 0.397789 1.3:+72427978 MS.gene91356:CDS
TGAGAAAGTGACTTGTTTGT+TGG 0.422775 1.3:-72427731 None:intergenic
GCTGACAAACTATTCTGCTT+TGG 0.441818 1.3:+72427838 MS.gene91356:CDS
ATTGAGGATTGTATCGGTGT+TGG 0.451013 1.3:-72427866 None:intergenic
TTGAGGATTGTATCGGTGTT+GGG 0.452068 1.3:-72427865 None:intergenic
AAAGAGCAAGCTTCTTAAAA+GGG 0.470494 1.3:+72428128 MS.gene91356:CDS
AAGCAGAATAGTTTGTCAGC+AGG 0.500375 1.3:-72427835 None:intergenic
AAAGTACAATAGACAATATG+AGG 0.506411 1.3:+72427954 MS.gene91356:CDS
AGCAGAATAGTTTGTCAGCA+GGG 0.519077 1.3:-72427834 None:intergenic
TTCAATCTTCTTGCACCCTG+TGG 0.532853 1.3:-72427686 None:intergenic
AACCAAAGAAAGAAAACCAC+AGG 0.543748 1.3:+72427670 MS.gene91356:CDS
ATCCTCAATAGCTATATCAA+AGG 0.568313 1.3:+72427880 MS.gene91356:CDS
GCAGAATAGTTTGTCAGCAG+GGG 0.610124 1.3:-72427833 None:intergenic
ACTTTCTCAAAGAGAAGACA+AGG 0.611669 1.3:+72427745 MS.gene91356:CDS
ATAGCTATTGAGGATTGTAT+CGG 0.621531 1.3:-72427872 None:intergenic
GTACAATAGACAATATGAGG+AGG 0.673698 1.3:+72427957 MS.gene91356:CDS
ACCAAAGAAAGAAAACCACA+GGG 0.761146 1.3:+72427671 MS.gene91356:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAGTACAATAGACAATATG+AGG + chr1.3:72427954-72427973 MS.gene91356:CDS 25.0%
! TAGCTATATCAAAGGAAATA+TGG + chr1.3:72427888-72427907 MS.gene91356:CDS 25.0%
AAAGAGCAAGCTTCTTAAAA+GGG + chr1.3:72428128-72428147 MS.gene91356:CDS 30.0%
ATAGCTATTGAGGATTGTAT+CGG - chr1.3:72427875-72427894 None:intergenic 30.0%
ATCACCTTTCTTCAAAAACT+TGG - chr1.3:72428037-72428056 None:intergenic 30.0%
ATCCTCAATAGCTATATCAA+AGG + chr1.3:72427880-72427899 MS.gene91356:CDS 30.0%
CAAAGGAAATATGGAATTTG+AGG + chr1.3:72427897-72427916 MS.gene91356:CDS 30.0%
CTTGCTCTTTAACTCAAAAA+TGG - chr1.3:72428118-72428137 None:intergenic 30.0%
TAAAGAGCAAGCTTCTTAAA+AGG + chr1.3:72428127-72428146 MS.gene91356:CDS 30.0%
TGAAGAGCTTGAACAATTTA+TGG + chr1.3:72428089-72428108 MS.gene91356:CDS 30.0%
TTCCTTTGATATAGCTATTG+AGG - chr1.3:72427885-72427904 None:intergenic 30.0%
! ACTAGCTGATGTTGAAATTT+TGG + chr1.3:72428011-72428030 MS.gene91356:CDS 30.0%
! TTGTCTATTGTACTTTTCGT+AGG - chr1.3:72427950-72427969 None:intergenic 30.0%
!! AGTTTTTGAAGAAAGGTGAT+TGG + chr1.3:72428037-72428056 MS.gene91356:CDS 30.0%
AACCAAAGAAAGAAAACCAC+AGG + chr1.3:72427670-72427689 MS.gene91356:CDS 35.0%
ACCAAAGAAAGAAAACCACA+GGG + chr1.3:72427671-72427690 MS.gene91356:CDS 35.0%
ACTTTCTCAAAGAGAAGACA+AGG + chr1.3:72427745-72427764 MS.gene91356:CDS 35.0%
GGCATTAAAGATGTTAGAGT+TGG + chr1.3:72427978-72427997 MS.gene91356:CDS 35.0%
GTACAATAGACAATATGAGG+AGG + chr1.3:72427957-72427976 MS.gene91356:CDS 35.0%
!! TGAGAAAGTGACTTGTTTGT+TGG - chr1.3:72427734-72427753 None:intergenic 35.0%
!! TTGGCCAAGTTTTTGAAGAA+AGG + chr1.3:72428030-72428049 MS.gene91356:CDS 35.0%
!! TTTTGAAGAAAGGTGATTGG+TGG + chr1.3:72428040-72428059 MS.gene91356:CDS 35.0%
GCTGACAAACTATTCTGCTT+TGG + chr1.3:72427838-72427857 MS.gene91356:CDS 40.0%
! AAGCAGAATAGTTTGTCAGC+AGG - chr1.3:72427838-72427857 None:intergenic 40.0%
! ACCCTGTGGTTTTCTTTCTT+TGG - chr1.3:72427675-72427694 None:intergenic 40.0%
! AGCAGAATAGTTTGTCAGCA+GGG - chr1.3:72427837-72427856 None:intergenic 40.0%
! ATTGAGGATTGTATCGGTGT+TGG - chr1.3:72427869-72427888 None:intergenic 40.0%
! TTGAGGATTGTATCGGTGTT+GGG - chr1.3:72427868-72427887 None:intergenic 40.0%
TTCAATCTTCTTGCACCCTG+TGG - chr1.3:72427689-72427708 None:intergenic 45.0%
! GCAGAATAGTTTGTCAGCAG+GGG - chr1.3:72427836-72427855 None:intergenic 45.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 72427658 72428179 72427658 ID=MS.gene91356
chr1.3 mRNA 72427658 72428179 72427658 ID=MS.gene91356.t1;Parent=MS.gene91356
chr1.3 exon 72427658 72428179 72427658 ID=MS.gene91356.t1.exon1;Parent=MS.gene91356.t1
chr1.3 CDS 72427658 72428179 72427658 ID=cds.MS.gene91356.t1;Parent=MS.gene91356.t1
Gene Sequence

>MS.gene91356

ATGAATATGGATAACCAAAGAAAGAAAACCACAGGGTGCAAGAAGATTGAAATCAAAAAGCTTGACAAAGAATCCAACAAACAAGTCACTTTCTCAAAGAGAAGACAAGGTTTGTTCAAAAAAGCAAGTGAACTTTGTGTCTTATGTGATGTTCAAGTAGCTATGATTGTGTTCTCCCCTGCTGACAAACTATTCTGCTTTGGTCAACCCAACACCGATACAATCCTCAATAGCTATATCAAAGGAAATATGGAATTTGAGGATTCAAAATCAACAGAAAATTCTTCAACCTACGAAAAGTACAATAGACAATATGAGGAGGCATTAAAGATGTTAGAGTTGGAGAAGAAGAAACTAGCTGATGTTGAAATTTTGGCCAAGTTTTTGAAGAAAGGTGATTGGTGGAATGATTCAATTGATGATATGAGTAGTGAAGAGCTTGAACAATTTATGGTGTCCATTTTTGAGTTAAAGAGCAAGCTTCTTAAAAGGGCTGATGAACTTATGATGTCTGTCATATAG
Protein sequence

>MS.gene91356.t1

MNMDNQRKKTTGCKKIEIKKLDKESNKQVTFSKRRQGLFKKASELCVLCDVQVAMIVFSPADKLFCFGQPNTDTILNSYIKGNMEFEDSKSTENSSTYEKYNRQYEEALKMLELEKKKLADVEILAKFLKKGDWWNDSIDDMSSEELEQFMVSIFELKSKLLKRADELMMSVI