AlfalfaGEDB | MS.gene91407

M. sativa cultivar XinJiangDaYe / MS.gene91407

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0008289 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32 PF01852.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91407.t1	XP_004496853.1	49.7	638	158	12	52	539	38	662	1.70E-146	529.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91407.t1	Q93V99	44.4	619	195	15	60	533	54	668	5.3e-128	459.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91407.t1	A0A1S2XZ98	49.7	638	158	12	52	539	38	662	1.2e-146	529.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene91407.t1	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91407.t1	MTR_2g088470	50.113	443	142	9	167	533	234	673	2.23e-136	413
MS.gene91407.t1	MTR_2g088470	52.874	87	38	2	40	125	41	125	1.86e-20	95.9
MS.gene91407.t1	MTR_4g047800	48.261	460	157	8	150	531	207	663	7.95e-134	407
MS.gene91407.t1	MTR_4g047800	51.807	83	35	2	43	125	41	118	6.36e-19	91.3
MS.gene91407.t1	MTR_5g005600	38.609	676	251	18	22	545	6	669	4.08e-128	392
MS.gene91407.t1	MTR_8g432540	41.492	429	168	9	186	533	314	740	1.01e-98	317
MS.gene91407.t1	MTR_8g432540	46.377	69	36	1	59	126	106	174	4.66e-13	72.4
MS.gene91407.t1	MTR_7g076080	39.863	439	173	10	183	533	278	713	2.69e-98	315
MS.gene91407.t1	MTR_7g076080	46.377	69	36	1	59	126	82	150	1.96e-12	70.5
MS.gene91407.t1	MTR_1g101280	36.743	479	193	11	138	533	233	684	4.48e-92	298

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91407.t1	AT4G04890	43.457	619	201	15	60	533	54	668	2.18e-153	457
MS.gene91407.t1	AT4G04890	43.457	619	201	15	60	533	54	668	2.18e-153	457
MS.gene91407.t1	AT4G21750	50.219	456	148	8	154	533	225	677	7.81e-142	428
MS.gene91407.t1	AT4G21750	40.541	111	59	2	22	125	10	120	1.70e-19	93.2
MS.gene91407.t1	AT4G21750	50.219	456	148	8	154	533	225	677	7.81e-142	428
MS.gene91407.t1	AT4G21750	40.541	111	59	2	22	125	10	120	1.70e-19	93.2
MS.gene91407.t1	AT4G21750	50.219	456	148	8	154	533	225	677	7.81e-142	428
MS.gene91407.t1	AT4G21750	40.541	111	59	2	22	125	10	120	1.70e-19	93.2
MS.gene91407.t1	AT4G21750	50.219	456	148	8	154	533	225	677	7.81e-142	428
MS.gene91407.t1	AT4G21750	40.541	111	59	2	22	125	10	120	1.70e-19	93.2

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Find 138 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGTATTGGTGAACC+TGG	0.558177	1.3:-71857757	MS.gene91407:CDS
AAAACTTGCTGTGGTTTCTA+TGG	0.300043	1.3:-71860480	MS.gene91407:CDS
AAAAGCCTCCTTGGAACAAC+CGG	0.439163	1.3:+71857688	None:intergenic
AAAATCATTAGGAATTGAGA+GGG	0.623957	1.3:+71860520	None:intergenic
AAACAAGCGCAACCAAATTA+AGG	0.338062	1.3:-71861552	MS.gene91407:intron
AAACAATTGAGTTGTGAGCT+AGG	0.524320	1.3:-71861608	MS.gene91407:CDS
AAACGAAGTTGAATACCCTA+GGG	0.587167	1.3:-71860390	MS.gene91407:CDS
AAATCAAAATTCAAGAAGTG+AGG	0.648827	1.3:-71857653	MS.gene91407:intron
AACAAAACCAGAGGGAAGCA+AGG	0.544639	1.3:+71857002	None:intergenic
AACAGTGTCACACCAAAATG+TGG	0.622312	1.3:-71861990	MS.gene91407:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACATATATGCAATACAG+TGG	-	chr1.3:71860740-71860759	MS.gene91407:intron	30.0%
AATGAATAAGACAAAAGTGG+AGG	+	chr1.3:71860659-71860678	None:intergenic	30.0%
AATGTTACAAAGTCTGACAT+TGG	+	chr1.3:71859294-71859313	None:intergenic	30.0%
AATTTAAAGACGTACTCCAT+CGG	+	chr1.3:71857465-71857484	None:intergenic	30.0%
AGTCTTCAATGACAGTTTAT+TGG	-	chr1.3:71860453-71860472	MS.gene91407:CDS	30.0%
AGTTACTTCTTCTTTGTTGA+TGG	+	chr1.3:71856847-71856866	None:intergenic	30.0%
AGTTCAACAGAATTAAGCAT+AGG	+	chr1.3:71861723-71861742	None:intergenic	30.0%
ATCAACATCACTTCTTCAAT+CGG	-	chr1.3:71856743-71856762	MS.gene91407:intron	30.0%
ATGAATCTCAACAAAATCAC+AGG	-	chr1.3:71861149-71861168	MS.gene91407:intron	30.0%
ATGCTTAATTCTGTTGAACT+TGG	-	chr1.3:71861723-71861742	MS.gene91407:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	71856653	71862032	71856653	ID=MS.gene91407
chr1.3	mRNA	71856653	71862032	71856653	ID=MS.gene91407.t1;Parent=MS.gene91407
chr1.3	exon	71861782	71862032	71861782	ID=MS.gene91407.t1.exon1;Parent=MS.gene91407.t1
chr1.3	CDS	71861782	71862032	71861782	ID=cds.MS.gene91407.t1;Parent=MS.gene91407.t1
chr1.3	exon	71861553	71861670	71861553	ID=MS.gene91407.t1.exon2;Parent=MS.gene91407.t1
chr1.3	CDS	71861553	71861670	71861553	ID=cds.MS.gene91407.t1;Parent=MS.gene91407.t1
chr1.3	exon	71860363	71860705	71860363	ID=MS.gene91407.t1.exon3;Parent=MS.gene91407.t1
chr1.3	CDS	71860363	71860705	71860363	ID=cds.MS.gene91407.t1;Parent=MS.gene91407.t1
chr1.3	exon	71860038	71860099	71860038	ID=MS.gene91407.t1.exon4;Parent=MS.gene91407.t1
chr1.3	CDS	71860038	71860099	71860038	ID=cds.MS.gene91407.t1;Parent=MS.gene91407.t1
chr1.3	exon	71859124	71859324	71859124	ID=MS.gene91407.t1.exon5;Parent=MS.gene91407.t1
chr1.3	CDS	71859124	71859324	71859124	ID=cds.MS.gene91407.t1;Parent=MS.gene91407.t1
chr1.3	exon	71858716	71858896	71858716	ID=MS.gene91407.t1.exon6;Parent=MS.gene91407.t1
chr1.3	CDS	71858716	71858896	71858716	ID=cds.MS.gene91407.t1;Parent=MS.gene91407.t1
chr1.3	exon	71857654	71857832	71857654	ID=MS.gene91407.t1.exon7;Parent=MS.gene91407.t1
chr1.3	CDS	71857654	71857832	71857654	ID=cds.MS.gene91407.t1;Parent=MS.gene91407.t1
chr1.3	exon	71857295	71857384	71857295	ID=MS.gene91407.t1.exon8;Parent=MS.gene91407.t1
chr1.3	CDS	71857295	71857384	71857295	ID=cds.MS.gene91407.t1;Parent=MS.gene91407.t1
chr1.3	exon	71856938	71857163	71856938	ID=MS.gene91407.t1.exon9;Parent=MS.gene91407.t1
chr1.3	CDS	71856938	71857163	71856938	ID=cds.MS.gene91407.t1;Parent=MS.gene91407.t1
chr1.3	exon	71856653	71856687	71856653	ID=MS.gene91407.t1.exon10;Parent=MS.gene91407.t1
chr1.3	CDS	71856653	71856687	71856653	ID=cds.MS.gene91407.t1;Parent=MS.gene91407.t1

Gene Sequence

>MS.gene91407

ATGGTTGAGGATGAACAACAAACAGTGTCACACCAAAATGTGGTTGATCATCCTCAATCAGTACACCAACAACAATTTCGAGACATGCCAATCAACATCACTTCTTCAATCGGTTATTTGGAAAGATGTAATCAGAACCAAAATTCTAGAAATGAAGCTCTTTCTTCCCTTCGAGACCAAGATCCTAACCACCATCAACAAAGAAGAAGTAACTTTCGACACTCGCAAAAACAGATTCAAGAAATGGAATCGTAGGGTCAATTGTTCCAATACTCTTCCTTTTTTTTAGATAATTAAACATATTTTCTTGTGTTGTTTAGTTATTTTTCTTACTTAACATCATCAATTTGTGATGTTTTCAGGTTCTTCGAGCAATGCCCTCTCCCTAATGGCAAGCAAAGGAAACAATTGAGTTGTGAGCTAGGTCTTACACCTACGCAAATCAAGTTCTGGTTTCAAAACAAGCGCAACCAAATTAAGGTAAAGGATAATGAAAACCCTTTTGAAATGTGAGATCTTACATGCACGGTGAACCCTTAAAAATAAATTTGTACTACCTCCAGTCTCAATTATAAACAAAAAATTATTTTTTAATTCATTCAATATTTATTTTTTAATTCATTCAATAACTAATGTATTTGGTCGTAATACAGACCAAATACATTGGTTATTGAATGAATCTAAAATGTAAATTTTTACTTATTTTGGTGGTGGCCAGAGTTTGAACCAAGAACCTATCATATTTTATGCATTATCCATACCAACTGAGTTAAACTCACGATGACGTAAACTTTTACTTATAACTGATACCGATGGAGTACGTCTTTAAATTTTATTGTTACAACATTAATGTATTTTCATTTTGGTTACAAAAAGAGATTGAAGTGCGCACACTTTGGATTGACGTAAATAAAAACCAAATTGTGTCATTATAATTTGATGATTCTTTGAGCACATATATGCATGCAGACACAACAGGAACTTCACCAAAATGATCTTTTGAGGGACGAGAATGAGAAGCTTCGTGCTGAAAATGAGATCTATAAGGGGGCACTAAAAGACTCTTTTATGTCCAAATTGTACTGATCCAATTTCTATTGGTGAAATGTCCTCTAACGACAATCAACTTAGAATTGAGAATGCTAGATTAAAGGTTGAGGTATATATGCTTTTAAATTGCTTATTTATAGTCGCTATTATAAAACAATTTATTTTTTTAATAATATAATTTACCTCCAGTGCACTGTGTATATAAAATTGCTTTTATTTCTCATTTTCTTGTTGGTTGAACTAATGGTTATGTTTTGTTAATTCTTTTGTGTCTTAGATTGAAATGTTCACAGGAAAGTTAGTAAACGATGTAGATCTAGTGGGTTCCTCCTCTAAAATTGATCAAATATCTACACCTGCATTTGAAATGGGAAGTGGTAGTGATATCTCTTCAAGCATGATAGAAGAATTGTATTGTGATGGCAATGACCCCTTAGGGTCCCTCTCAATTCCTAATGATTTTGACAAAGCAACGATTGTAAAACTTGCTGTGGTTTCTATGGAGGAACTCACAATGTTAACTCTTGCTGGATCCCCTTTATGGATTTCCACCAATGACACTGAGATTCTAAACGAAGTTGAATACCCTAGGGTTTTTCCCAAAAGTCCGAAACTCACGGGTTAAATTCTGAATCTTCAAGAGAATCGGTTATTGTTTCCATGAATCATATTAATCTCATTGATATCCTTATGGATGTGGTGAGTAACAAGATATCAATAATTTTCATAGGCATACTAATCAATTAATTTTATCGAGCAATTTTTATGTGAATAAATAATATATTTTTTTTTGACAAGATGTGAATAAATAATATTGCAATTTTCTATTGGCAATGATTTTAGAGTCAATGGTCAACTATGTTTCATGCGATTGTTTCAAAAGCATTGACACTTGAAGTTCTATCACCTGGAGTGTCAGGGAAATACAATGGAGCTCTACAAGTGGTATGTGATTTATGTTATCCTTTTTGATTTAGTTTAAAAAAAATATTTATGTTGACTTATTTAAGCATATAATCAATTGTTAAACAATTTTAGATGACTTACAAAAACAAGTTATGATATGTTCATAAGTTTTTTACAACTTATTTTCAAAAGCTCTAGATATATAACATGAAAACAACTATAGTTTTATCGAAATAATTTGATTTTATTAAAAATTCAAAATTTTGAATGATACACTTGAGATGACTTAAAAGCATGGACCAAAAGTGGTGATAGAAAACTTTTAAGGAATAAAAGTACAAGAATTTTTTTAGGGGAACTACATCAAAAAGTTGAAATATTTAGAGACATAAAATATAGTTATGAGTTATCCTTTTATCTATTGTTTTTGAACTTTTTGGTCGGGTCTAACACAACCACACAAAACGGACTTGTGGTGTAATGATTGCCCCCACTTATAAACACTTGATCATGTCATCTCTTAAAAAATGTAGGACTCTTAAACCATCTAAGAGTTTGTGGTTGACTTAAAACAACCCCAAATTTGACTTTAAAAAACAATTTAGTGAGCATATGATTGACCCCCCACTTTTTTTTTTTTAAGGGTTTGACCTCCACTTTTGAACACTAGTCCACCTCTCAACCAATGTCAGACTTTGTAACATTTTGATATAAAAATAACTTATATTATATGACAAACATTCCTATTTCAGATGTCAGCTGATTTTCAGGTTCCTTCACCACTGGTTCCTGCTCGTGAAAACTATTTCGTTAGATATTCTAAGAAGCACCAAGAAGGGATATGGGCAGTGGTTGATGTTTCCTTGGATCACCTGCAACCAAGTAGTAGTACATTGACACGAAGACGACCCTCTGGTTGTTTAATTCAAGAACTACCAAATGGTTGTTCAAAGGTATGTCACAATGTTTTATTTGAAACGAATATTAGAATTGATTGTATTGTATGATGTTGAGAATGGTCCTTAAATCTCCCACCTCAGCCACCATGCAAACCATATATTTAACAATTTACATTCCTTCCTCCTTCAAAAAAAACAATTTACATTTTTTAGTTATTTAAAAATTATTATCCTTCAATTTTTATTTTTTTTTACCAAAATGAATTGTAACATCTATTTAGGTTACATGGGTAGAGCATGTAGAACTGGATGAAAACACAATAGTGTCAAATCCATTCTATAAATCTTTAATAACTTCTGGTCTTGCCTTTGGAGCTAAGAGATGGGTGACCTCATTAGGTAGACAATGTGAACGTCTTGCTTGTTCAATGACCAACAACATACCTGTAGAAGACCATTGTGGTATATATTTTTAATTCTCTTAATTTCAGTTTACTTTTCATTTGTGTTTTATTCAATTTCAATCTCTTTTTCAAGAAGTCGGACTAATCTACCGAAATTAGCATTAATTAAGGAGAATCAAACATAAGACATTGAGATAAACATATTTTAATGTCTCAAGCCAAAATTTTAATATACACATAGGAGAAATATTTAATAATTTTCTCTTGCAATTTTTTAAAACATATTTATCATTAAGATACTTTGAAGAAGAAAAATAAATATTATTTTTATTGTTTTTTGAAAAGGCATTCTTTCTCTAGCTATCCTTCTTTATTTTTCCATTATAATTATTGACCATTTTCATCTACTTATTAGCAATTTAAAATAACACAGATTTTAAAAAATTGAAATTTGAAAAACTATTTTTTGTTTAATTATGAATTTAATCCATGCAATTATAATTTTTTTTCTAGTGCCCTCTACGGTTTTTTGTTTGGATATAGTCTTCAATGACAGTTTATTGGGCCACGTAGAGGGAATTTATCAGAACATATACGACATCATGGATTAAAAGCAACTATTTTTAAATTAACAAGGACTAAATCTAAAAAACACCTAGAAGCACTGATAAAAAAAAAAAAAAAAACTATAATTATATAGACTAAATTCATACTTAAATTTTTTTAAGTGAGTAAACTTTTTTGCCTCCACTTTTGTCTTATTCATTTTTTAAGTGGGTAAATATTTTTAATCTTACACTCAATTACGTAATATGACTTAAAGTGTAAAACACATATATGCAATACAGTGGTAAATAGTCTTCAAGGAAGGAAGAGTTTGCTGGATTTGGCAGAGAGAATGAATTAAGTATGTTTTTATGCTGCCGTTGGTCCTTCTGTAGCTAGTTGCTGGGAAGTGTTAACATCTGATTGTGACGATGTAAGGGTCATGACCAAAACAAGTATTGGTGAACCTGGAACACCTACTGGTATTGTTCTTAGTGTTGGAACTTCTATTTGGCTTCCGGTTGTTCCAAGGAGGCTTTTTGATTTTCTTGGAAATCAAAATTCAAGAAGTGAGGTATGATCGATCATTTAACAAATGTTTCATATATGATTTGAACTTCATCCCGTTATGTTATAATGTTATAAAGTCAAACTCATATTATTAAGTTAACACCATGTCCTAGCAAATGAAATGAATCTCAACAAAATCACAGGGGTATTCAAAGTTGCATTTTATAAACTTATATTAATGATTTGATTCTTTCATTTTGGCCTTATATTGAAGCTAAGTAGCAGCTATTTTTTATTTCTTTGAACTTACGAACATTTTGTTGAATTTTACAGTGGGATGTTCTTTCCGTTGGGGGTATAATTAAAGAAATGGAACACATAACACATGGTCGTGATCTTGGAAACTATGTCTCTTTATTTCATGTAATTGGTTTATCACATAATTATCTAATGCAAGAAGATTATATATTCTAGTTAACTTATAGCCTAACTTTCTCTCAAATTTTATTTTTTTTCACCTAAAGTTCCTTTTGGTAAATGTCAATTAATTGCAGAGGGCTAATTGCGACCAAAATAATATGGTGGTGCTTCAAGACAATAACATTGATAGTACATGCTCACATGTTATTTATGCTCCGGTTGATATTGGTTCTGTGAATGCAATCTTAAATGGTGGTGATCCAAATTTTGTTGCCTTGCTTCCCTCTGGTTTTGTTATTCTCCCCAATAGGGCACAATTGAGAAACACAAGACCTATGCTTAATTCTGTTGAACTTGGAGGTTGTCTATTGACAATTTCATTTCAATTTTTAGTTGACCCAAGTCCAACAAGAAGAGTAGAAAATGACTCAATAGAATTTGCTGTCAAATTAGTTAAGAACACAACCGAACGGATCAAAGTTGCATTGGTCGATAGCAGCACCTAATTGCAAAGCTCAAATTAGTAAGTAAATATATGACCAATTTATATACCGATGAAAAATTATATCGATAGTTTATGATTAATGTAGTTTATTGATTTTTTATGCAGGCTACAAGAACAAAGAGAAGGAGAGTTGTAGATAA

Protein sequence

>MS.gene91407.t1

MVEDEQQTVSHQNVVDHPQSVHQQQFRDMPINITSSIGYLERCNQNQNSRNEALSSLRDQDPNHHQQRRSNFRHSQKQIQEMESFFEQCPLPNGKQRKQLSCELGLTPTQIKFWFQNKRNQIKIEMFTGKLVNDVDLVGSSSKIDQISTPAFEMGSGSDISSSMIEELYCDGNDPLGSLSIPNDFDKATIVKLAVVSMEELTMLTLAGSPLWISTNDTEILNEVEYPRVFPKSPKLTALTLEVLSPGVSGKYNGALQVMSADFQVPSPLVPARENYFVRYSKKHQEGIWAVVDVSLDHLQPSSSTLTRRRPSGCLIQELPNGCSKVTWVEHVELDENTIVSNPFYKSLITSGLAFGAKRWVTSLGRQCERLACSMTNNIPVEDHCASCWEVLTSDCDDVRVMTKTSIGEPGTPTGIVLSVGTSIWLPVVPRRLFDFLGNQNSRSEWDVLSVGGIIKEMEHITHGRDLGNYVSLFHRANCDQNNMVVLQDNNIDSTCSHVIYAPVDIGSVNAILNGGDPNFVALLPSGFVILPNRAQLRNTRPMLNSVELGGYKNKEKESCR