AlfalfaGEDB | MS.gene91420

M. sativa cultivar XinJiangDaYe / MS.gene91420

KEGG: K11644
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91420.t1	AES62696.1	51	100	49	0	3	102	2	101	1.40E-16	96.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91420.t1	O04539	39.3	89	53	1	6	94	4	91	3.2e-09	63.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91420.t1	G7IE26	51.0	100	49	0	3	102	2	101	1.0e-16	96.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene91420.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91420.t1	MTR_1g105010	50.495	101	50	0	3	103	2	102	1.20e-28	102
MS.gene91420.t1	MTR_7g089490	52.809	89	41	1	1	89	1	88	8.18e-22	85.1
MS.gene91420.t1	MTR_1g105955	48.611	72	37	0	11	82	10	81	4.60e-16	72.0
MS.gene91420.t1	MTR_1g105955	46.269	67	36	0	15	81	93	159	1.41e-12	62.8
MS.gene91420.t1	MTR_3g006125	44.578	83	45	1	11	92	174	256	7.29e-15	70.1
MS.gene91420.t1	MTR_5g036670	41.558	77	45	0	9	85	35	111	2.00e-14	70.1
MS.gene91420.t1	MTR_3g006185	45.122	82	44	1	12	92	93	174	4.07e-14	66.6
MS.gene91420.t1	MTR_8g062700	42.308	78	44	1	8	85	34	110	1.41e-13	67.8
MS.gene91420.t1	MTR_8g062700	42.308	78	44	1	8	85	34	110	1.41e-13	67.8
MS.gene91420.t1	MTR_4g133470	40.187	107	60	2	16	121	88	191	2.70e-13	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91420.t1	AT3G01320	36.782	87	55	0	13	99	53	139	6.22e-13	65.9
MS.gene91420.t1	AT3G01320	36.782	87	55	0	13	99	53	139	6.66e-13	65.9
MS.gene91420.t1	AT1G70060	38.889	90	54	1	5	94	3	91	2.10e-12	64.3
MS.gene91420.t1	AT1G70060	38.889	90	54	1	5	94	3	91	2.10e-12	64.3
MS.gene91420.t1	AT1G24190	39.474	76	45	1	5	80	3	77	7.12e-12	62.8
MS.gene91420.t1	AT1G24190	39.474	76	45	1	5	80	3	77	7.61e-12	62.8
MS.gene91420.t1	AT1G24190	39.474	76	45	1	5	80	3	77	7.69e-12	62.8
MS.gene91420.t1	AT5G15040	42.188	64	37	0	15	78	1	64	1.95e-11	57.4
MS.gene91420.t1	AT5G15040	42.188	64	37	0	15	78	1	64	1.95e-11	57.4
MS.gene91420.t1	AT5G15040	42.188	64	37	0	15	78	1	64	1.95e-11	57.4

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Find 15 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAGGAGTTGTTCGA+TGG	0.597043	1.3:-71711054	MS.gene91420:CDS
AAGCAAAACAGCACATCAAA+CGG	0.452640	1.3:-71710951	MS.gene91420:CDS
AAGGATTACAGTGGTGATGC+TGG	0.561781	1.3:-71711225	MS.gene91420:CDS
ACGGGATCGATTCAAGTTGG+AGG	0.593315	1.3:-71710932	MS.gene91420:CDS
AGCAAAACAGCACATCAAAC+GGG	0.507498	1.3:-71710950	MS.gene91420:CDS
AGTTGTGTTTCAAGATAAGA+TGG	0.435039	1.3:-71711151	MS.gene91420:CDS
ATTGCCAAACTCGATCAAAT+AGG	0.324623	1.3:-71710853	MS.gene91420:CDS
CAAACGGGATCGATTCAAGT+TGG	0.545140	1.3:-71710935	MS.gene91420:CDS
CGACTGATGAAGGATTACAG+TGG	0.795711	1.3:-71711234	None:intergenic
GCAGAGAACATGAAGAAGCG+AGG	0.677188	1.3:-71710790	MS.gene91420:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTGTGTTTCAAGATAAGA+TGG	-	chr1.3:71710842-71710861	MS.gene91420:CDS	30.0%
TAGAGATCTCTTTAGCATTA+AGG	+	chr1.3:71710994-71711013	None:intergenic	30.0%
AAGCAAAACAGCACATCAAA+CGG	-	chr1.3:71711042-71711061	MS.gene91420:CDS	35.0%
ATTGCCAAACTCGATCAAAT+AGG	-	chr1.3:71711140-71711159	MS.gene91420:CDS	35.0%
TCAGAAACTACTAAGCATGA+AGG	-	chr1.3:71710791-71710810	MS.gene91420:CDS	35.0%
TTGCCAAACTCGATCAAATA+GGG	-	chr1.3:71711141-71711160	MS.gene91420:CDS	35.0%
AAAATGGAGGAGTTGTTCGA+TGG	-	chr1.3:71710939-71710958	MS.gene91420:CDS	40.0%
AGCAAAACAGCACATCAAAC+GGG	-	chr1.3:71711043-71711062	MS.gene91420:CDS	40.0%
TGACCCTATTTGATCGAGTT+TGG	+	chr1.3:71711147-71711166	None:intergenic	40.0%
AAGTGCCACAGCAAAAATGG+AGG	-	chr1.3:71710926-71710945	MS.gene91420:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	71710765	71711250	71710765	ID=MS.gene91420
chr1.3	mRNA	71710765	71711250	71710765	ID=MS.gene91420.t1;Parent=MS.gene91420
chr1.3	exon	71710765	71711250	71710765	ID=MS.gene91420.t1.exon1;Parent=MS.gene91420.t1
chr1.3	CDS	71710765	71711250	71710765	ID=cds.MS.gene91420.t1;Parent=MS.gene91420.t1

Gene Sequence

>MS.gene91420

ATGAAGGATTACAGTGGTGATGCTGGTCAGAAACTACTAAGCATGAAGGAAGCATCAGCGTTTGTAAATGATGTAAAAGTTGTGTTTCAAGATAAGATGGAAAAGTATGATGAGTTTGTGAAAGTTTTGTATGATTTCAAGGCTATGAGAATTGATCAAGAAAGTGCCACAGCAAAAATGGAGGAGTTGTTCGATGGACATTCAGATTTGATTATGAAATTAAACTCCTTAATGCTAAAGAGATCTCTAATGACTAACAATGATCATAATGACACTGAAGCAAAACAGCACATCAAACGGGATCGATTCAAGTTGGAGGTAATTGACCAATTTAATCAAATGCTTGACAAACTAGAGAAATTTGAGTTGAAAGTGATTGCCAAACTCGATCAAATAGGGTCAAGTGCTCAACATTCAACTAAAGCAATATTAGACATTGCAGAGAACATGAAGAAGCGAGGCGTGACAAACGTGAGTCAAAAGTGA

Protein sequence

>MS.gene91420.t1

MKDYSGDAGQKLLSMKEASAFVNDVKVVFQDKMEKYDEFVKVLYDFKAMRIDQESATAKMEELFDGHSDLIMKLNSLMLKRSLMTNNDHNDTEAKQHIKRDRFKLEVIDQFNQMLDKLEKFELKVIAKLDQIGSSAQHSTKAILDIAENMKKRGVTNVSQK