Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91572.t1 | XP_013448949.1 | 87.8 | 425 | 52 | 0 | 1 | 425 | 1 | 425 | 1.00E-190 | 676.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91572.t1 | Q9ATB4 | 54.2 | 413 | 179 | 4 | 18 | 425 | 18 | 425 | 2.5e-113 | 410.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91572.t1 | A0A072U0P5 | 87.8 | 425 | 52 | 0 | 1 | 425 | 1 | 425 | 7.3e-191 | 676.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene91572.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91572.t1 | MTR_7g063290 | 90.588 | 425 | 40 | 0 | 1 | 425 | 1 | 425 | 0.0 | 754 |
MS.gene91572.t1 | MTR_2g026310 | 70.675 | 474 | 69 | 7 | 18 | 425 | 19 | 488 | 0.0 | 644 |
MS.gene91572.t1 | MTR_2g026380 | 71.462 | 431 | 96 | 4 | 1 | 411 | 1 | 424 | 0.0 | 601 |
MS.gene91572.t1 | MTR_3g081360 | 49.780 | 454 | 177 | 8 | 17 | 425 | 4 | 451 | 9.52e-139 | 410 |
MS.gene91572.t1 | MTR_3g082790 | 56.818 | 396 | 129 | 5 | 7 | 360 | 10 | 405 | 1.06e-138 | 411 |
MS.gene91572.t1 | MTR_3g082790 | 58.611 | 360 | 109 | 3 | 41 | 360 | 6 | 365 | 1.77e-134 | 399 |
MS.gene91572.t1 | MTR_3g081380 | 62.346 | 162 | 59 | 1 | 18 | 177 | 16 | 177 | 8.92e-69 | 218 |
MS.gene91572.t1 | MTR_3g081420 | 65.068 | 146 | 39 | 1 | 292 | 425 | 2 | 147 | 1.90e-52 | 177 |
MS.gene91572.t1 | MTR_7g062030 | 90.909 | 77 | 7 | 0 | 19 | 95 | 33 | 109 | 3.70e-37 | 133 |
MS.gene91572.t1 | MTR_3g081390 | 63.333 | 90 | 33 | 0 | 89 | 178 | 36 | 125 | 7.81e-30 | 113 |
MS.gene91572.t1 | MTR_3g081410 | 53.409 | 88 | 27 | 1 | 325 | 398 | 1 | 88 | 4.60e-18 | 80.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91572.t1 | AT4G16420 | 57.971 | 414 | 162 | 6 | 18 | 425 | 18 | 425 | 5.55e-160 | 463 |
MS.gene91572.t1 | AT4G16420 | 57.971 | 414 | 161 | 6 | 18 | 425 | 18 | 424 | 8.85e-160 | 462 |
MS.gene91572.t1 | AT4G16420 | 57.346 | 422 | 148 | 7 | 18 | 425 | 18 | 421 | 3.12e-159 | 461 |
MS.gene91572.t1 | AT3G07740 | 45.714 | 420 | 190 | 5 | 19 | 400 | 22 | 441 | 6.04e-116 | 352 |
MS.gene91572.t1 | AT3G07740 | 45.926 | 405 | 182 | 4 | 37 | 404 | 20 | 424 | 1.82e-115 | 350 |
MS.gene91572.t1 | AT3G07740 | 44.965 | 427 | 190 | 6 | 19 | 400 | 22 | 448 | 3.87e-113 | 345 |
MS.gene91572.t1 | AT3G07740 | 45.576 | 373 | 166 | 4 | 69 | 404 | 2 | 374 | 2.36e-101 | 313 |
Find 117 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATATTATAGGATCGGATTC+TGG | 0.183755 | 7.1:+38532596 | MS.gene91572:intron |
TCGTCGTTTCTTGAGGATTT+TGG | 0.221990 | 7.1:-38532841 | None:intergenic |
ATTGTCTCTGGGCTTCTATT+CGG | 0.265662 | 7.1:+38536963 | MS.gene91572:CDS |
AAGAAACGACGACCCTTCTT+TGG | 0.270029 | 7.1:+38532852 | MS.gene91572:CDS |
AAATGTATGGCATGAATAAC+TGG | 0.272278 | 7.1:+38532097 | MS.gene91572:CDS |
TGGTGGTCTGGTATTGTCTC+TGG | 0.278256 | 7.1:+38536951 | MS.gene91572:CDS |
ACAGACTCCTCAAGAAATTC+TGG | 0.286197 | 7.1:+38532808 | MS.gene91572:intron |
AAGTTGAAGAAAGTGCTCTT+AGG | 0.286354 | 7.1:+38533502 | MS.gene91572:CDS |
AGTAGCTCGCCCTGCAGGTC+TGG | 0.289473 | 7.1:-38533601 | None:intergenic |
TTGTATCTTATTTAGCAATA+TGG | 0.292758 | 7.1:+38536463 | MS.gene91572:intron |
AGTTCTGTGTTCAGAGATAA+TGG | 0.309266 | 7.1:-38533320 | None:intergenic |
GAAAAGATTTCAAGAGCTTA+AGG | 0.314875 | 7.1:+38533345 | MS.gene91572:CDS |
CTCTCCATGCTTCCCTCTTC+CGG | 0.329198 | 7.1:+38532194 | MS.gene91572:CDS |
TTGTCTCTGGGCTTCTATTC+GGG | 0.332826 | 7.1:+38536964 | MS.gene91572:CDS |
TGATACGTATCTATAATAAA+AGG | 0.333141 | 7.1:+38533007 | MS.gene91572:CDS |
ACAAAAGCAATCATGCTTAC+AGG | 0.334147 | 7.1:+38531653 | MS.gene91572:CDS |
TCAACACATAAGTCAAAATC+TGG | 0.338230 | 7.1:-38531598 | None:intergenic |
TCCCTCTCATTTGCCCCGAC+TGG | 0.345302 | 7.1:+38531917 | MS.gene91572:CDS |
TGAGAAGAAAGGAGCTGAAA+AGG | 0.351944 | 7.1:-38536765 | None:intergenic |
TTTGGAACCCCGCGATTGTT+CGG | 0.352779 | 7.1:-38533549 | None:intergenic |
TTGGAACCCCGCGATTGTTC+GGG | 0.360592 | 7.1:-38533548 | None:intergenic |
ACACTATAGGATTGTGTACT+TGG | 0.367311 | 7.1:+38532170 | MS.gene91572:CDS |
AATTAGTTTGGTTGGTGGTC+TGG | 0.378989 | 7.1:+38536939 | MS.gene91572:intron |
TACTGTAATATCGATATTAC+AGG | 0.392999 | 7.1:+38531547 | MS.gene91572:CDS |
TTCAAGTTATGTCAATGAAA+TGG | 0.396353 | 7.1:+38533623 | MS.gene91572:CDS |
TTCATGTGATCTCCAGCGTT+TGG | 0.398886 | 7.1:+38536737 | MS.gene91572:CDS |
TGCAAGTGGAACTAACAAAA+AGG | 0.402401 | 7.1:+38532640 | MS.gene91572:CDS |
GGTGTTAAATCCTTCTCAAA+TGG | 0.404781 | 7.1:-38533217 | None:intergenic |
TCCGCAGACATCAAGGCATT+TGG | 0.409190 | 7.1:-38533567 | None:intergenic |
AGTTCTTCATCATGTATGTA+TGG | 0.417195 | 7.1:+38536493 | MS.gene91572:CDS |
TCGCAGGAAGCTCGTGCTGC+TGG | 0.418619 | 7.1:+38533462 | MS.gene91572:intron |
AGTGGAGATAACTCAGAATC+TGG | 0.422645 | 7.1:+38530911 | MS.gene91572:CDS |
TAGGACATGTCTCATGTTGT+TGG | 0.424875 | 7.1:+38532305 | MS.gene91572:intron |
TCTTCATCCGCGTTCCAGTC+GGG | 0.425170 | 7.1:-38531931 | None:intergenic |
ATCTCTTTGCACAACAAAAC+AGG | 0.433868 | 7.1:+38536843 | MS.gene91572:CDS |
TCTGCTGATCCCAGACCTGC+AGG | 0.434755 | 7.1:+38533591 | MS.gene91572:CDS |
ATATTATAGGATCGGATTCT+GGG | 0.435344 | 7.1:+38532597 | MS.gene91572:intron |
GGTGGTCTGGTATTGTCTCT+GGG | 0.436754 | 7.1:+38536952 | MS.gene91572:CDS |
TCTTGCCATGGGGAAAGGGC+AGG | 0.439550 | 7.1:+38532346 | MS.gene91572:CDS |
GTAGCTCGCCCTGCAGGTCT+GGG | 0.445211 | 7.1:-38533600 | None:intergenic |
TCCAATAGAGGCCGGGGAAA+AGG | 0.446039 | 7.1:+38532665 | MS.gene91572:CDS |
GTTCATGCGCTTTCATACTA+AGG | 0.450239 | 7.1:+38533273 | MS.gene91572:CDS |
GGCACACGGCACACTTAATC+CGG | 0.453805 | 7.1:-38531576 | None:intergenic |
TGAGCAATTACTCGCTGATA+TGG | 0.455025 | 7.1:+38532936 | MS.gene91572:CDS |
AACTCAGAATCTGGAGCTGC+AGG | 0.455987 | 7.1:+38530920 | MS.gene91572:CDS |
GGATTTAACACCAGAGGAAA+AGG | 0.457443 | 7.1:+38533228 | MS.gene91572:CDS |
AACTTCTTGCCATGGGGAAA+GGG | 0.466541 | 7.1:+38532342 | MS.gene91572:CDS |
GAGAAGAAAGGAGCTGAAAA+GGG | 0.472707 | 7.1:-38536764 | None:intergenic |
AGGCATGCACTGAACACTAT+AGG | 0.474478 | 7.1:+38532157 | MS.gene91572:CDS |
AAGGAGCGGGTGAAGCGAAA+AGG | 0.478432 | 7.1:+38531506 | MS.gene91572:CDS |
CCACTAGCTTCAACCAAAGA+AGG | 0.482411 | 7.1:-38532865 | None:intergenic |
TTTACATGAATTAGTTTGGT+TGG | 0.483981 | 7.1:+38536931 | MS.gene91572:intron |
GAACTTCTTGCCATGGGGAA+AGG | 0.484313 | 7.1:+38532341 | MS.gene91572:CDS |
TAAGCATCTCATACCGGAAG+AGG | 0.490021 | 7.1:-38532207 | None:intergenic |
ATGTGGTCCCGAACAATCGC+GGG | 0.490676 | 7.1:+38533541 | MS.gene91572:CDS |
CTTGAAGTAGCTCGCCCTGC+AGG | 0.492075 | 7.1:-38533606 | None:intergenic |
TTCTTCATCCGCGTTCCAGT+CGG | 0.492141 | 7.1:-38531932 | None:intergenic |
CTTCATCCGCGTTCCAGTCG+GGG | 0.497867 | 7.1:-38531930 | None:intergenic |
AAAGGCATCCAATAGAGGCC+GGG | 0.501091 | 7.1:+38532658 | MS.gene91572:CDS |
TCGATATTACAGGACAAATC+CGG | 0.502784 | 7.1:+38531557 | MS.gene91572:CDS |
GCTGCGACAATGAGAGTTGA+CGG | 0.508676 | 7.1:-38536801 | None:intergenic |
AGTTGAAGAAAGTGCTCTTA+GGG | 0.511093 | 7.1:+38533503 | MS.gene91572:CDS |
CCTTCTTTGGTTGAAGCTAG+TGG | 0.513297 | 7.1:+38532865 | MS.gene91572:CDS |
ACATGAATTAGTTTGGTTGG+TGG | 0.514267 | 7.1:+38536934 | MS.gene91572:intron |
CTAGTGGTTATAACCCGAAA+AGG | 0.518651 | 7.1:+38532881 | MS.gene91572:CDS |
AAAAGGCATCCAATAGAGGC+CGG | 0.528852 | 7.1:+38532657 | MS.gene91572:CDS |
CTTTCTTCTCACTTTCGTCG+TGG | 0.529838 | 7.1:+38536777 | MS.gene91572:CDS |
TTGTAGGGACTTGAAATGTA+TGG | 0.531054 | 7.1:+38532084 | MS.gene91572:intron |
AGGAGCGGGTGAAGCGAAAA+GGG | 0.534590 | 7.1:+38531507 | MS.gene91572:CDS |
ATCACCCTGCCCTTTCCCCA+TGG | 0.538821 | 7.1:-38532351 | None:intergenic |
AAGAGAAGAACTTCTTGCCA+TGG | 0.541775 | 7.1:+38532334 | MS.gene91572:CDS |
AGAGAAGAACTTCTTGCCAT+GGG | 0.541877 | 7.1:+38532335 | MS.gene91572:CDS |
AGAAGGGTCGTCGTTTCTTG+AGG | 0.547054 | 7.1:-38532848 | None:intergenic |
GGCAAGAGAAAGTGCTTATG+TGG | 0.547957 | 7.1:+38533524 | MS.gene91572:CDS |
CAAAAGCAATCATGCTTACA+GGG | 0.548051 | 7.1:+38531654 | MS.gene91572:CDS |
TGATGTAAATGCAGAGCTGA+TGG | 0.549898 | 7.1:+38536712 | MS.gene91572:intron |
CTTGCCATGGGGAAAGGGCA+GGG | 0.550128 | 7.1:+38532347 | MS.gene91572:CDS |
GTCAAGACACATGCTGCAAG+TGG | 0.551744 | 7.1:+38532626 | MS.gene91572:CDS |
CTTCATCATGTATGTATGGG+AGG | 0.553131 | 7.1:+38536497 | MS.gene91572:CDS |
TGGTTATAACCCGAAAAGGC+AGG | 0.554434 | 7.1:+38532885 | MS.gene91572:CDS |
AGCAGAGTCCGCAGACATCA+AGG | 0.554768 | 7.1:-38533574 | None:intergenic |
GGAAGAAATTCATACTTGAA+AGG | 0.555899 | 7.1:+38533176 | MS.gene91572:CDS |
GCAGCATGTGTCTTGACTGA+GGG | 0.556800 | 7.1:-38532620 | None:intergenic |
TTCCAGTCGGGGCAAATGAG+AGG | 0.561768 | 7.1:-38531919 | None:intergenic |
GTTCTTCATCATGTATGTAT+GGG | 0.562546 | 7.1:+38536494 | MS.gene91572:CDS |
AAGGCATCCAATAGAGGCCG+GGG | 0.566680 | 7.1:+38532659 | MS.gene91572:CDS |
TGCAGCATGTGTCTTGACTG+AGG | 0.568324 | 7.1:-38532621 | None:intergenic |
GTCAATGAAATGGATGCTGC+AGG | 0.580740 | 7.1:+38533633 | MS.gene91572:CDS |
ATATGAAAATCCATTTGAGA+AGG | 0.582614 | 7.1:+38533207 | MS.gene91572:CDS |
ATTTCCTCCAGAATTTCTTG+AGG | 0.585270 | 7.1:-38532815 | None:intergenic |
TCCAGTCGGGGCAAATGAGA+GGG | 0.588487 | 7.1:-38531918 | None:intergenic |
TGTGCGTTAGGTCAAGGAGC+GGG | 0.597133 | 7.1:+38531493 | MS.gene91572:intron |
TGAGAAGGATTTAACACCAG+AGG | 0.597905 | 7.1:+38533222 | MS.gene91572:CDS |
CTGCTGATCCCAGACCTGCA+GGG | 0.599308 | 7.1:+38533592 | MS.gene91572:CDS |
CATTTGCCCCGACTGGAACG+CGG | 0.599728 | 7.1:+38531924 | MS.gene91572:CDS |
AAAGAGATGGCGACAGAACA+CGG | 0.600206 | 7.1:-38536828 | None:intergenic |
CAATCATGCTTACAGGGTCA+TGG | 0.600463 | 7.1:+38531660 | MS.gene91572:CDS |
CACTAGCTTCAACCAAAGAA+GGG | 0.601892 | 7.1:-38532864 | None:intergenic |
GAAGAAGTTGCTGAGCATGT+TGG | 0.602780 | 7.1:+38532120 | MS.gene91572:CDS |
TATGTGGTCCCGAACAATCG+CGG | 0.611263 | 7.1:+38533540 | MS.gene91572:CDS |
CACGACGAAAGTGAGAAGAA+AGG | 0.615159 | 7.1:-38536776 | None:intergenic |
AAGCATCTCATACCGGAAGA+GGG | 0.618355 | 7.1:-38532206 | None:intergenic |
CAACACATAAGTCAAAATCT+GGG | 0.618792 | 7.1:-38531597 | None:intergenic |
CATACCGGAAGAGGGAAGCA+TGG | 0.621701 | 7.1:-38532198 | None:intergenic |
GACTCCTCAAGAAATTCTGG+AGG | 0.622144 | 7.1:+38532811 | MS.gene91572:intron |
GGGCAGGGTGATGACAAGAA+AGG | 0.622437 | 7.1:+38532362 | MS.gene91572:CDS |
TCCAAATGCCTTGATGTCTG+CGG | 0.623348 | 7.1:+38533566 | MS.gene91572:CDS |
TTGTGCGTTAGGTCAAGGAG+CGG | 0.633749 | 7.1:+38531492 | MS.gene91572:intron |
TAAGTCAAAATCTGGGCACA+CGG | 0.634031 | 7.1:-38531590 | None:intergenic |
GATGTAAATGCAGAGCTGAT+GGG | 0.640377 | 7.1:+38536713 | MS.gene91572:intron |
GGCTTGATGAAAGAGAGCGC+AGG | 0.663647 | 7.1:+38533155 | MS.gene91572:intron |
TAAGAAAACAGCATCGATCG+AGG | 0.670114 | 7.1:+38529499 | MS.gene91572:CDS |
AATGTATGGCATGAATAACT+GGG | 0.679265 | 7.1:+38532098 | MS.gene91572:CDS |
TGTTGGAACAAAGAACAAAG+AGG | 0.696475 | 7.1:+38532137 | MS.gene91572:CDS |
GAGAAGAACTTCTTGCCATG+GGG | 0.698357 | 7.1:+38532336 | MS.gene91572:CDS |
TGTGGTCCCGAACAATCGCG+GGG | 0.699968 | 7.1:+38533542 | MS.gene91572:CDS |
GTTTAACGACTCTGACACTG+CGG | 0.772673 | 7.1:+38532960 | MS.gene91572:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 38529485 | 38536992 | 38529485 | ID=MS.gene91572 |
chr7.1 | mRNA | 38529485 | 38536992 | 38529485 | ID=MS.gene91572.t1;Parent=MS.gene91572 |
chr7.1 | exon | 38529485 | 38529534 | 38529485 | ID=MS.gene91572.t1.exon1;Parent=MS.gene91572.t1 |
chr7.1 | CDS | 38529485 | 38529534 | 38529485 | ID=cds.MS.gene91572.t1;Parent=MS.gene91572.t1 |
chr7.1 | exon | 38530886 | 38530941 | 38530886 | ID=MS.gene91572.t1.exon2;Parent=MS.gene91572.t1 |
chr7.1 | CDS | 38530886 | 38530941 | 38530886 | ID=cds.MS.gene91572.t1;Parent=MS.gene91572.t1 |
chr7.1 | exon | 38531503 | 38531681 | 38531503 | ID=MS.gene91572.t1.exon3;Parent=MS.gene91572.t1 |
chr7.1 | CDS | 38531503 | 38531681 | 38531503 | ID=cds.MS.gene91572.t1;Parent=MS.gene91572.t1 |
chr7.1 | exon | 38531904 | 38531969 | 38531904 | ID=MS.gene91572.t1.exon4;Parent=MS.gene91572.t1 |
chr7.1 | CDS | 38531904 | 38531969 | 38531904 | ID=cds.MS.gene91572.t1;Parent=MS.gene91572.t1 |
chr7.1 | exon | 38532090 | 38532215 | 38532090 | ID=MS.gene91572.t1.exon5;Parent=MS.gene91572.t1 |
chr7.1 | CDS | 38532090 | 38532215 | 38532090 | ID=cds.MS.gene91572.t1;Parent=MS.gene91572.t1 |
chr7.1 | exon | 38532308 | 38532383 | 38532308 | ID=MS.gene91572.t1.exon6;Parent=MS.gene91572.t1 |
chr7.1 | CDS | 38532308 | 38532383 | 38532308 | ID=cds.MS.gene91572.t1;Parent=MS.gene91572.t1 |
chr7.1 | exon | 38532606 | 38532686 | 38532606 | ID=MS.gene91572.t1.exon7;Parent=MS.gene91572.t1 |
chr7.1 | CDS | 38532606 | 38532686 | 38532606 | ID=cds.MS.gene91572.t1;Parent=MS.gene91572.t1 |
chr7.1 | exon | 38532812 | 38533028 | 38532812 | ID=MS.gene91572.t1.exon8;Parent=MS.gene91572.t1 |
chr7.1 | CDS | 38532812 | 38533028 | 38532812 | ID=cds.MS.gene91572.t1;Parent=MS.gene91572.t1 |
chr7.1 | exon | 38533156 | 38533366 | 38533156 | ID=MS.gene91572.t1.exon9;Parent=MS.gene91572.t1 |
chr7.1 | CDS | 38533156 | 38533366 | 38533156 | ID=cds.MS.gene91572.t1;Parent=MS.gene91572.t1 |
chr7.1 | exon | 38533468 | 38533677 | 38533468 | ID=MS.gene91572.t1.exon10;Parent=MS.gene91572.t1 |
chr7.1 | CDS | 38533468 | 38533677 | 38533468 | ID=cds.MS.gene91572.t1;Parent=MS.gene91572.t1 |
chr7.1 | exon | 38536478 | 38536518 | 38536478 | ID=MS.gene91572.t1.exon11;Parent=MS.gene91572.t1 |
chr7.1 | CDS | 38536478 | 38536518 | 38536478 | ID=cds.MS.gene91572.t1;Parent=MS.gene91572.t1 |
chr7.1 | exon | 38536726 | 38536864 | 38536726 | ID=MS.gene91572.t1.exon12;Parent=MS.gene91572.t1 |
chr7.1 | CDS | 38536726 | 38536864 | 38536726 | ID=cds.MS.gene91572.t1;Parent=MS.gene91572.t1 |
chr7.1 | exon | 38536945 | 38536992 | 38536945 | ID=MS.gene91572.t1.exon13;Parent=MS.gene91572.t1 |
chr7.1 | CDS | 38536945 | 38536992 | 38536945 | ID=cds.MS.gene91572.t1;Parent=MS.gene91572.t1 |
Gene Sequence |
Protein sequence |