Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91640.t1 | XP_024626129.1 | 83.2 | 273 | 46 | 0 | 1 | 273 | 1 | 273 | 6.50E-123 | 450.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91640.t1 | Q9LFQ3 | 40.1 | 152 | 87 | 3 | 99 | 250 | 52 | 199 | 6.7e-20 | 99.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91640.t1 | A0A396GZV2 | 83.2 | 273 | 46 | 0 | 1 | 273 | 1 | 273 | 4.7e-123 | 450.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene91640.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91640.t1 | MTR_7g013380 | 83.206 | 262 | 44 | 0 | 1 | 262 | 1 | 262 | 8.60e-151 | 423 |
MS.gene91640.t1 | MTR_4g133300 | 34.188 | 234 | 145 | 4 | 26 | 259 | 20 | 244 | 3.78e-34 | 124 |
MS.gene91640.t1 | MTR_4g133300 | 35.673 | 171 | 101 | 5 | 5 | 173 | 81 | 244 | 4.97e-20 | 87.0 |
MS.gene91640.t1 | MTR_4g133470 | 33.761 | 234 | 146 | 4 | 26 | 259 | 20 | 244 | 1.23e-32 | 120 |
MS.gene91640.t1 | MTR_4g133470 | 36.257 | 171 | 100 | 5 | 5 | 173 | 81 | 244 | 1.39e-19 | 85.9 |
MS.gene91640.t1 | MTR_3g006125 | 39.521 | 167 | 93 | 3 | 99 | 259 | 89 | 253 | 1.11e-26 | 105 |
MS.gene91640.t1 | MTR_3g006125 | 38.415 | 164 | 93 | 3 | 11 | 168 | 87 | 248 | 9.27e-24 | 97.1 |
MS.gene91640.t1 | MTR_1g105955 | 43.796 | 137 | 70 | 2 | 118 | 254 | 33 | 162 | 2.97e-26 | 101 |
MS.gene91640.t1 | MTR_1g105955 | 37.821 | 156 | 86 | 4 | 14 | 168 | 17 | 162 | 2.80e-20 | 85.9 |
MS.gene91640.t1 | MTR_3g006185 | 37.952 | 166 | 96 | 3 | 99 | 259 | 8 | 171 | 2.58e-24 | 96.7 |
MS.gene91640.t1 | MTR_3g006185 | 36.471 | 170 | 101 | 5 | 9 | 173 | 4 | 171 | 2.81e-20 | 85.9 |
MS.gene91640.t1 | MTR_3g006105 | 38.554 | 166 | 93 | 4 | 99 | 258 | 8 | 170 | 5.39e-24 | 95.9 |
MS.gene91640.t1 | MTR_3g006105 | 35.366 | 164 | 98 | 3 | 11 | 168 | 6 | 167 | 1.31e-19 | 84.3 |
MS.gene91640.t1 | MTR_3g006105 | 45.000 | 80 | 43 | 1 | 186 | 265 | 9 | 87 | 3.91e-13 | 66.6 |
MS.gene91640.t1 | MTR_8g062700 | 41.304 | 138 | 77 | 3 | 115 | 250 | 56 | 191 | 1.04e-23 | 100 |
MS.gene91640.t1 | MTR_8g062700 | 38.406 | 138 | 81 | 3 | 29 | 164 | 56 | 191 | 1.06e-18 | 86.3 |
MS.gene91640.t1 | MTR_8g062700 | 40.860 | 93 | 54 | 1 | 171 | 262 | 25 | 117 | 3.49e-14 | 72.8 |
MS.gene91640.t1 | MTR_8g062700 | 41.304 | 138 | 77 | 3 | 115 | 250 | 56 | 191 | 1.05e-23 | 100 |
MS.gene91640.t1 | MTR_8g062700 | 38.406 | 138 | 81 | 3 | 29 | 164 | 56 | 191 | 1.06e-18 | 86.3 |
MS.gene91640.t1 | MTR_8g062700 | 40.860 | 93 | 54 | 1 | 171 | 262 | 25 | 117 | 3.42e-14 | 72.8 |
MS.gene91640.t1 | MTR_3g006065 | 38.411 | 151 | 89 | 3 | 105 | 252 | 7 | 156 | 2.60e-23 | 94.4 |
MS.gene91640.t1 | MTR_3g006065 | 38.849 | 139 | 77 | 3 | 32 | 166 | 22 | 156 | 1.47e-19 | 84.3 |
MS.gene91640.t1 | MTR_3g006150 | 37.419 | 155 | 93 | 3 | 101 | 252 | 3 | 156 | 2.95e-23 | 93.2 |
MS.gene91640.t1 | MTR_3g006150 | 39.568 | 139 | 76 | 3 | 32 | 166 | 22 | 156 | 1.51e-21 | 89.0 |
MS.gene91640.t1 | MTR_1g104960 | 34.969 | 163 | 100 | 3 | 99 | 259 | 13 | 171 | 4.65e-23 | 93.2 |
MS.gene91640.t1 | MTR_1g104960 | 31.481 | 162 | 105 | 3 | 11 | 170 | 11 | 168 | 1.40e-17 | 78.6 |
MS.gene91640.t1 | MTR_1g104980 | 34.356 | 163 | 86 | 4 | 102 | 262 | 2 | 145 | 2.89e-21 | 88.6 |
MS.gene91640.t1 | MTR_1g104980 | 33.951 | 162 | 90 | 3 | 16 | 177 | 2 | 146 | 6.60e-20 | 84.7 |
MS.gene91640.t1 | MTR_5g036670 | 36.620 | 142 | 80 | 3 | 115 | 251 | 57 | 193 | 9.11e-20 | 89.4 |
MS.gene91640.t1 | MTR_5g036670 | 35.461 | 141 | 83 | 3 | 29 | 165 | 57 | 193 | 3.24e-16 | 79.0 |
MS.gene91640.t1 | MTR_5g036670 | 46.970 | 66 | 35 | 0 | 201 | 266 | 57 | 122 | 5.85e-12 | 66.2 |
MS.gene91640.t1 | MTR_7g013410 | 33.333 | 147 | 91 | 3 | 103 | 249 | 2 | 141 | 1.51e-19 | 82.8 |
MS.gene91640.t1 | MTR_7g013410 | 31.973 | 147 | 93 | 3 | 17 | 163 | 2 | 141 | 7.48e-19 | 81.3 |
MS.gene91640.t1 | MTR_6g008970 | 34.177 | 158 | 98 | 3 | 95 | 250 | 59 | 212 | 8.53e-19 | 86.7 |
MS.gene91640.t1 | MTR_6g008970 | 32.026 | 153 | 98 | 3 | 14 | 164 | 64 | 212 | 2.54e-14 | 73.2 |
MS.gene91640.t1 | MTR_6g008995 | 33.553 | 152 | 97 | 2 | 99 | 250 | 37 | 184 | 2.36e-18 | 84.7 |
MS.gene91640.t1 | MTR_6g008995 | 31.126 | 151 | 100 | 2 | 14 | 164 | 38 | 184 | 1.39e-14 | 73.6 |
MS.gene91640.t1 | MTR_6g008995 | 33.594 | 128 | 83 | 1 | 123 | 250 | 2 | 127 | 4.02e-15 | 75.1 |
MS.gene91640.t1 | MTR_6g008995 | 31.250 | 128 | 86 | 1 | 37 | 164 | 2 | 127 | 1.90e-12 | 67.0 |
MS.gene91640.t1 | MTR_1g104937 | 45.455 | 77 | 40 | 1 | 100 | 176 | 13 | 87 | 2.45e-13 | 65.5 |
MS.gene91640.t1 | MTR_1g104937 | 45.455 | 77 | 40 | 1 | 186 | 262 | 13 | 87 | 7.05e-13 | 64.3 |
MS.gene91640.t1 | MTR_1g104937 | 44.444 | 81 | 42 | 2 | 11 | 90 | 10 | 88 | 3.00e-11 | 59.7 |
MS.gene91640.t1 | MTR_1g104940 | 41.237 | 97 | 51 | 2 | 100 | 192 | 15 | 109 | 3.08e-13 | 65.5 |
MS.gene91640.t1 | MTR_1g104940 | 43.750 | 80 | 43 | 1 | 183 | 262 | 12 | 89 | 4.10e-13 | 65.1 |
MS.gene91640.t1 | MTR_1g105960 | 33.945 | 109 | 46 | 1 | 115 | 223 | 15 | 97 | 1.67e-12 | 63.2 |
MS.gene91640.t1 | MTR_1g105960 | 43.548 | 62 | 35 | 0 | 201 | 262 | 15 | 76 | 6.12e-11 | 58.5 |
MS.gene91640.t1 | MTR_1g105010 | 39.326 | 89 | 50 | 2 | 95 | 183 | 12 | 96 | 1.56e-11 | 60.5 |
MS.gene91640.t1 | MTR_1g105010 | 42.857 | 77 | 42 | 1 | 186 | 262 | 17 | 91 | 5.81e-11 | 58.9 |
MS.gene91640.t1 | MTR_8g062350 | 30.000 | 180 | 74 | 6 | 117 | 249 | 27 | 201 | 9.74e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91640.t1 | AT5G15020 | 38.608 | 158 | 93 | 3 | 93 | 250 | 46 | 199 | 5.97e-22 | 95.9 |
MS.gene91640.t1 | AT5G15020 | 35.948 | 153 | 94 | 3 | 14 | 166 | 53 | 201 | 7.62e-17 | 80.9 |
MS.gene91640.t1 | AT5G15020 | 38.608 | 158 | 93 | 3 | 93 | 250 | 46 | 199 | 6.31e-22 | 95.9 |
MS.gene91640.t1 | AT5G15020 | 35.948 | 153 | 94 | 3 | 14 | 166 | 53 | 201 | 7.68e-17 | 80.9 |
MS.gene91640.t1 | AT1G24190 | 37.654 | 162 | 95 | 5 | 91 | 250 | 6 | 163 | 1.03e-21 | 95.1 |
MS.gene91640.t1 | AT1G24190 | 34.682 | 173 | 106 | 6 | 3 | 172 | 4 | 172 | 6.44e-18 | 84.0 |
MS.gene91640.t1 | AT1G24190 | 41.975 | 81 | 45 | 1 | 186 | 266 | 15 | 93 | 6.48e-11 | 63.2 |
MS.gene91640.t1 | AT1G24190 | 37.654 | 162 | 95 | 5 | 91 | 250 | 6 | 163 | 1.06e-21 | 95.1 |
MS.gene91640.t1 | AT1G24190 | 34.682 | 173 | 106 | 6 | 3 | 172 | 4 | 172 | 6.38e-18 | 84.0 |
MS.gene91640.t1 | AT1G24190 | 45.455 | 66 | 36 | 0 | 201 | 266 | 28 | 93 | 6.60e-11 | 63.2 |
MS.gene91640.t1 | AT1G24190 | 37.654 | 162 | 95 | 5 | 91 | 250 | 6 | 163 | 1.09e-21 | 95.1 |
MS.gene91640.t1 | AT1G24190 | 34.682 | 173 | 106 | 6 | 3 | 172 | 4 | 172 | 6.45e-18 | 84.0 |
MS.gene91640.t1 | AT1G24190 | 41.975 | 81 | 45 | 1 | 186 | 266 | 15 | 93 | 6.14e-11 | 63.2 |
MS.gene91640.t1 | AT1G70030 | 35.032 | 157 | 92 | 4 | 96 | 249 | 8 | 157 | 5.05e-21 | 87.4 |
MS.gene91640.t1 | AT1G70030 | 35.762 | 151 | 91 | 3 | 14 | 163 | 12 | 157 | 3.48e-19 | 82.4 |
MS.gene91640.t1 | AT1G70060 | 35.366 | 164 | 99 | 4 | 90 | 250 | 5 | 164 | 6.06e-20 | 90.1 |
MS.gene91640.t1 | AT1G70060 | 33.333 | 165 | 103 | 4 | 3 | 164 | 4 | 164 | 4.05e-17 | 81.6 |
MS.gene91640.t1 | AT1G70060 | 35.366 | 164 | 99 | 4 | 90 | 250 | 5 | 164 | 6.06e-20 | 90.1 |
MS.gene91640.t1 | AT1G70060 | 33.333 | 165 | 103 | 4 | 3 | 164 | 4 | 164 | 4.05e-17 | 81.6 |
MS.gene91640.t1 | AT3G01320 | 30.918 | 207 | 135 | 4 | 47 | 249 | 2 | 204 | 7.04e-19 | 86.7 |
MS.gene91640.t1 | AT3G01320 | 29.911 | 224 | 144 | 6 | 14 | 232 | 58 | 273 | 1.72e-17 | 82.8 |
MS.gene91640.t1 | AT3G01320 | 51.786 | 56 | 27 | 0 | 201 | 256 | 71 | 126 | 2.39e-11 | 64.3 |
MS.gene91640.t1 | AT3G01320 | 30.918 | 207 | 135 | 4 | 47 | 249 | 2 | 204 | 7.19e-19 | 86.7 |
MS.gene91640.t1 | AT3G01320 | 29.911 | 224 | 144 | 6 | 14 | 232 | 58 | 273 | 1.70e-17 | 82.8 |
MS.gene91640.t1 | AT3G01320 | 46.970 | 66 | 35 | 0 | 201 | 266 | 71 | 136 | 2.26e-11 | 64.3 |
MS.gene91640.t1 | AT1G59890 | 33.824 | 136 | 88 | 1 | 115 | 250 | 59 | 192 | 2.62e-18 | 85.1 |
MS.gene91640.t1 | AT1G59890 | 33.582 | 134 | 87 | 1 | 31 | 164 | 61 | 192 | 1.01e-15 | 77.4 |
MS.gene91640.t1 | AT1G59890 | 33.824 | 136 | 88 | 1 | 115 | 250 | 59 | 192 | 2.86e-18 | 85.1 |
MS.gene91640.t1 | AT1G59890 | 33.582 | 134 | 87 | 1 | 31 | 164 | 61 | 192 | 1.18e-15 | 77.4 |
MS.gene91640.t1 | AT1G59890 | 33.824 | 136 | 88 | 1 | 115 | 250 | 59 | 192 | 3.02e-18 | 85.1 |
MS.gene91640.t1 | AT1G59890 | 33.582 | 134 | 87 | 1 | 31 | 164 | 61 | 192 | 1.19e-15 | 77.4 |
MS.gene91640.t1 | AT1G59890 | 33.824 | 136 | 88 | 1 | 115 | 250 | 59 | 192 | 3.11e-18 | 84.7 |
MS.gene91640.t1 | AT1G59890 | 33.582 | 134 | 87 | 1 | 31 | 164 | 61 | 192 | 1.26e-15 | 77.0 |
MS.gene91640.t1 | AT1G24230 | 25.000 | 244 | 154 | 6 | 3 | 241 | 4 | 223 | 2.61e-17 | 79.3 |
MS.gene91640.t1 | AT1G24230 | 27.545 | 167 | 105 | 4 | 95 | 261 | 10 | 160 | 2.81e-13 | 68.2 |
MS.gene91640.t1 | AT1G10450 | 33.813 | 139 | 90 | 1 | 115 | 253 | 98 | 234 | 2.62e-17 | 82.0 |
MS.gene91640.t1 | AT1G10450 | 32.051 | 156 | 103 | 2 | 31 | 186 | 100 | 252 | 1.33e-15 | 77.0 |
MS.gene91640.t1 | AT1G10450 | 33.813 | 139 | 90 | 1 | 115 | 253 | 47 | 183 | 3.17e-17 | 82.0 |
MS.gene91640.t1 | AT1G10450 | 32.051 | 156 | 103 | 2 | 31 | 186 | 49 | 201 | 1.48e-15 | 77.0 |
MS.gene91640.t1 | AT1G10450 | 33.813 | 139 | 90 | 1 | 115 | 253 | 47 | 183 | 3.17e-17 | 82.0 |
MS.gene91640.t1 | AT1G10450 | 32.051 | 156 | 103 | 2 | 31 | 186 | 49 | 201 | 1.48e-15 | 77.0 |
MS.gene91640.t1 | AT1G24200 | 31.169 | 154 | 101 | 4 | 96 | 249 | 11 | 159 | 1.39e-14 | 70.9 |
MS.gene91640.t1 | AT1G70030 | 28.662 | 157 | 70 | 4 | 96 | 249 | 19 | 136 | 6.62e-12 | 62.4 |
MS.gene91640.t1 | AT1G70030 | 35.922 | 103 | 59 | 3 | 96 | 195 | 19 | 117 | 2.03e-11 | 60.5 |
MS.gene91640.t1 | AT5G35610 | 42.647 | 68 | 39 | 0 | 201 | 268 | 24 | 91 | 8.66e-11 | 59.7 |
Find 47 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAACAATTTCACGTTAAAT+TGG | 0.277062 | 7.4:+85645091 | MS.gene91640:CDS |
ATAGATTTATTCAAGTTAAC+AGG | 0.306329 | 7.4:+85644044 | MS.gene91640:CDS |
AACATCATTGACAAATTCTT+TGG | 0.313079 | 7.4:-85644737 | None:intergenic |
TAGAATTGATGATGCAAATC+TGG | 0.365588 | 7.4:+85644968 | MS.gene91640:intron |
TAACTTTCTGAATGTCTTGA+AGG | 0.368309 | 7.4:+85644445 | MS.gene91640:CDS |
AGAACATTGTGACGTCAAAA+AGG | 0.380889 | 7.4:+85643994 | MS.gene91640:CDS |
ATCTGAGGAGGAACAATCTC+TGG | 0.416325 | 7.4:+85644337 | MS.gene91640:CDS |
AGTAGTTCAATCTTGATATA+AGG | 0.418112 | 7.4:-85644639 | None:intergenic |
TAACTTTCTGAATGTGTTGA+AGG | 0.435901 | 7.4:+85644801 | MS.gene91640:CDS |
AAGGGATTATTTGAAGGTCA+TGG | 0.456386 | 7.4:+85644257 | MS.gene91640:CDS |
GAATCTTGGTGAATTATTGA+AGG | 0.480427 | 7.4:+85644594 | MS.gene91640:CDS |
AGGATTGACGCTGCGAATCT+TGG | 0.486810 | 7.4:+85644580 | MS.gene91640:intron |
AGCTTGATTTCAAATCCATC+AGG | 0.489510 | 7.4:-85644311 | None:intergenic |
AAATCTCAGTAAATTCTTGA+AGG | 0.490603 | 7.4:+85644238 | MS.gene91640:CDS |
TTCTTGAAGGGATTATTTGA+AGG | 0.491097 | 7.4:+85644251 | MS.gene91640:CDS |
AGCTTGATTTCATATCCATC+AGG | 0.493606 | 7.4:-85645056 | None:intergenic |
AACTTCATTGACGAACTCCT+TGG | 0.507296 | 7.4:-85644017 | None:intergenic |
AGCTTGATTTCAAATCCATC+GGG | 0.513708 | 7.4:-85644667 | None:intergenic |
TTATTGAAGGGATTATTTCA+AGG | 0.513778 | 7.4:+85644607 | MS.gene91640:CDS |
ATAATGAAGAAAATATTTGA+AGG | 0.513952 | 7.4:+85644996 | MS.gene91640:CDS |
AATCTTGGTGAATTATTGAA+GGG | 0.514858 | 7.4:+85644595 | MS.gene91640:CDS |
TTGAACTACTTCATGCCTGA+TGG | 0.515459 | 7.4:+85644296 | MS.gene91640:CDS |
AATCTCAGTAAATTCTTGAA+GGG | 0.520509 | 7.4:+85644239 | MS.gene91640:CDS |
TGAAATCAAGCTTCCATTGG+AGG | 0.531076 | 7.4:+85645067 | MS.gene91640:CDS |
AAGCTTGATTTCAAATCCAT+CGG | 0.533316 | 7.4:-85644668 | None:intergenic |
AGAGATTCTTCCTCCTCCGA+TGG | 0.538054 | 7.4:-85644691 | None:intergenic |
TTAAACTACTTCCTACCTGA+TGG | 0.558050 | 7.4:+85645041 | MS.gene91640:CDS |
TGAAATTGTTCCTCCTCCAA+TGG | 0.571267 | 7.4:-85645080 | None:intergenic |
AATCAAGCTTCCATCGGAGG+AGG | 0.577026 | 7.4:+85644681 | MS.gene91640:CDS |
ATATGAAATCAAGCTTCCAT+TGG | 0.577817 | 7.4:+85645064 | MS.gene91640:CDS |
TTGAACTACTTCATGCCCGA+TGG | 0.579628 | 7.4:+85644652 | MS.gene91640:CDS |
ATTTATTCAAGTTAATCAGA+GGG | 0.582516 | 7.4:+85644768 | MS.gene91640:CDS |
TGATGCATTACAAGAAACAA+AGG | 0.583155 | 7.4:+85644098 | MS.gene91640:CDS |
TGAAATCAAGCTTCCATCGG+AGG | 0.587204 | 7.4:+85644678 | MS.gene91640:CDS |
GATTTATTCAAGTTAATCAG+AGG | 0.587296 | 7.4:+85644411 | MS.gene91640:CDS |
GATTTATTCAAGTTAATCAG+AGG | 0.587296 | 7.4:+85644767 | MS.gene91640:CDS |
TGAAATCAAGCTTCTATCTG+AGG | 0.589635 | 7.4:+85644322 | MS.gene91640:CDS |
ATTTATTCAAGTTAATCAGA+GGG | 0.591574 | 7.4:+85644412 | MS.gene91640:CDS |
GATTTATTCAAGTTAACAGG+AGG | 0.594070 | 7.4:+85644047 | MS.gene91640:CDS |
TGAAGGATTACAAGAGACAA+AGG | 0.594478 | 7.4:+85644818 | MS.gene91640:CDS |
AATCAAGCTTCCATTGGAGG+AGG | 0.611644 | 7.4:+85645070 | MS.gene91640:CDS |
GGGCAACCCGTGATAATGGA+AGG | 0.616033 | 7.4:+85643962 | None:intergenic |
ATTTATTCAAGTTAACAGGA+GGG | 0.617938 | 7.4:+85644048 | MS.gene91640:CDS |
ATTTGAAATCAAGCTTCCAT+CGG | 0.624462 | 7.4:+85644675 | MS.gene91640:CDS |
TGATTTCATATCCATCAGGT+AGG | 0.626891 | 7.4:-85645052 | None:intergenic |
AATCAAGCTTCTATCTGAGG+AGG | 0.631110 | 7.4:+85644325 | MS.gene91640:CDS |
TGAAGGATTACAAAACACAA+AGG | 0.632152 | 7.4:+85644462 | MS.gene91640:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACAATATAATAAAAAAATAG+TGG | - | chr7.4:85644503-85644522 | None:intergenic | 10.0% |
!!! | TTTTTTATTATATTGTGAAA+TGG | + | chr7.4:85644507-85644526 | MS.gene91640:intron | 10.0% |
!! | ATAATGAAGAAAATATTTGA+AGG | + | chr7.4:85644996-85645015 | MS.gene91640:CDS | 15.0% |
!! | CATTACAATAAAAAAAATAG+TGG | - | chr7.4:85644139-85644158 | None:intergenic | 15.0% |
!! | GCAATATAATAAAAAAATAG+TGG | - | chr7.4:85644859-85644878 | None:intergenic | 15.0% |
!!! | TTTTTTATTATATTGCGAAA+TGG | + | chr7.4:85644863-85644882 | MS.gene91640:intron | 15.0% |
!! | AACTAATTTATCTATCCTTT+CGG | + | chr7.4:85644191-85644210 | MS.gene91640:intron | 20.0% |
!! | ATTCTACAAAATATACCAAA+TGG | - | chr7.4:85644954-85644973 | None:intergenic | 20.0% |
!!! | ATAGATTTATTCAAGTTAAC+AGG | + | chr7.4:85644044-85644063 | MS.gene91640:CDS | 20.0% |
!!! | ATTTATTCAAGTTAATCAGA+GGG | + | chr7.4:85644412-85644431 | MS.gene91640:CDS | 20.0% |
!!! | TATTAATTTGTCTATCCATT+TGG | + | chr7.4:85644936-85644955 | MS.gene91640:intron | 20.0% |
!!! | TGGATTCTATTAATTTTTGT+TGG | + | chr7.4:85644909-85644928 | MS.gene91640:intron | 20.0% |
! | AAATCTCAGTAAATTCTTGA+AGG | + | chr7.4:85644238-85644257 | MS.gene91640:CDS | 25.0% |
! | AACATCATTGACAAATTCTT+TGG | - | chr7.4:85644384-85644403 | None:intergenic | 25.0% |
! | AATCTCAGTAAATTCTTGAA+GGG | + | chr7.4:85644239-85644258 | MS.gene91640:CDS | 25.0% |
! | AATCTTGGTGAATTATTGAA+GGG | + | chr7.4:85644595-85644614 | MS.gene91640:CDS | 25.0% |
! | AGTAGTTCAATCTTGATATA+AGG | - | chr7.4:85644286-85644305 | None:intergenic | 25.0% |
! | TTATTGAAGGGATTATTTCA+AGG | + | chr7.4:85644607-85644626 | MS.gene91640:CDS | 25.0% |
!! | ATTTATTCAAGTTAACAGGA+GGG | + | chr7.4:85644048-85644067 | MS.gene91640:CDS | 25.0% |
!! | GATTTATTCAAGTTAATCAG+AGG | + | chr7.4:85644411-85644430 | MS.gene91640:CDS | 25.0% |
AAGCTTGATTTCAAATCCAT+CGG | - | chr7.4:85644315-85644334 | None:intergenic | 30.0% | |
ATATGAAATCAAGCTTCCAT+TGG | + | chr7.4:85645064-85645083 | MS.gene91640:CDS | 30.0% | |
ATCCTACAAAATATACCGAA+AGG | - | chr7.4:85644209-85644228 | None:intergenic | 30.0% | |
GAATCTTGGTGAATTATTGA+AGG | + | chr7.4:85644594-85644613 | MS.gene91640:CDS | 30.0% | |
GGAACAATTTCACGTTAAAT+TGG | + | chr7.4:85645091-85645110 | MS.gene91640:CDS | 30.0% | |
TAACTTTCTGAATGTCTTGA+AGG | + | chr7.4:85644445-85644464 | MS.gene91640:CDS | 30.0% | |
TAACTTTCTGAATGTGTTGA+AGG | + | chr7.4:85644801-85644820 | MS.gene91640:CDS | 30.0% | |
TGAAGGATTACAAAACACAA+AGG | + | chr7.4:85644462-85644481 | MS.gene91640:CDS | 30.0% | |
TGATGCATTACAAGAAACAA+AGG | + | chr7.4:85644098-85644117 | MS.gene91640:CDS | 30.0% | |
TTCTTGAAGGGATTATTTGA+AGG | + | chr7.4:85644251-85644270 | MS.gene91640:CDS | 30.0% | |
! | ATCCTTTCGGTATATTTTGT+AGG | + | chr7.4:85644204-85644223 | MS.gene91640:intron | 30.0% |
! | ATTTGAAATCAAGCTTCCAT+CGG | + | chr7.4:85644675-85644694 | MS.gene91640:CDS | 30.0% |
! | GACAAATTCTTTCGCATTTT+TGG | - | chr7.4:85644375-85644394 | None:intergenic | 30.0% |
! | GATTTATTCAAGTTAACAGG+AGG | + | chr7.4:85644047-85644066 | MS.gene91640:CDS | 30.0% |
!! | TAGAATTGATGATGCAAATC+TGG | + | chr7.4:85644968-85644987 | MS.gene91640:intron | 30.0% |
AAGGGATTATTTGAAGGTCA+TGG | + | chr7.4:85644257-85644276 | MS.gene91640:CDS | 35.0% | |
AGAACATTGTGACGTCAAAA+AGG | + | chr7.4:85643994-85644013 | MS.gene91640:CDS | 35.0% | |
AGCTTGATTTCAAATCCATC+AGG | - | chr7.4:85644314-85644333 | None:intergenic | 35.0% | |
AGCTTGATTTCAAATCCATC+GGG | - | chr7.4:85644314-85644333 | None:intergenic | 35.0% | |
AGCTTGATTTCATATCCATC+AGG | - | chr7.4:85645059-85645078 | None:intergenic | 35.0% | |
TGAAATCAAGCTTCTATCTG+AGG | + | chr7.4:85644322-85644341 | MS.gene91640:CDS | 35.0% | |
TGAAGGATTACAAGAGACAA+AGG | + | chr7.4:85644818-85644837 | MS.gene91640:CDS | 35.0% | |
TGATTTCATATCCATCAGGT+AGG | - | chr7.4:85645055-85645074 | None:intergenic | 35.0% | |
TTAAACTACTTCCTACCTGA+TGG | + | chr7.4:85645041-85645060 | MS.gene91640:CDS | 35.0% | |
AACTTCATTGACGAACTCCT+TGG | - | chr7.4:85644020-85644039 | None:intergenic | 40.0% | |
AATCAAGCTTCTATCTGAGG+AGG | + | chr7.4:85644325-85644344 | MS.gene91640:CDS | 40.0% | |
TGAAATCAAGCTTCCATTGG+AGG | + | chr7.4:85645067-85645086 | MS.gene91640:CDS | 40.0% | |
TGAAATTGTTCCTCCTCCAA+TGG | - | chr7.4:85645083-85645102 | None:intergenic | 40.0% | |
TTGAACTACTTCATGCCTGA+TGG | + | chr7.4:85644296-85644315 | MS.gene91640:CDS | 40.0% | |
AATCAAGCTTCCATTGGAGG+AGG | + | chr7.4:85645070-85645089 | MS.gene91640:CDS | 45.0% | |
ATCTGAGGAGGAACAATCTC+TGG | + | chr7.4:85644337-85644356 | MS.gene91640:CDS | 45.0% | |
TGAAATCAAGCTTCCATCGG+AGG | + | chr7.4:85644678-85644697 | MS.gene91640:CDS | 45.0% | |
TTGAACTACTTCATGCCCGA+TGG | + | chr7.4:85644652-85644671 | MS.gene91640:CDS | 45.0% | |
TTGTGACGTCAAAAAGGCCA+AGG | + | chr7.4:85644000-85644019 | MS.gene91640:CDS | 45.0% | |
!!! | ATTTTTTTATTATATTTTGT+AGG | + | chr7.4:85644560-85644579 | MS.gene91640:intron | 5.0% |
!!! | TTTATTTTTAAATAATGAAA+TGG | + | chr7.4:85644889-85644908 | MS.gene91640:intron | 5.0% |
AATCAAGCTTCCATCGGAGG+AGG | + | chr7.4:85644681-85644700 | MS.gene91640:CDS | 50.0% | |
AGAGATTCTTCCTCCTCCGA+TGG | - | chr7.4:85644694-85644713 | None:intergenic | 50.0% | |
AGGATTGACGCTGCGAATCT+TGG | + | chr7.4:85644580-85644599 | MS.gene91640:intron | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 85643977 | 85645133 | 85643977 | ID=MS.gene91640 |
chr7.4 | mRNA | 85643977 | 85645133 | 85643977 | ID=MS.gene91640.t1;Parent=MS.gene91640 |
chr7.4 | exon | 85643977 | 85644119 | 85643977 | ID=MS.gene91640.t1.exon1;Parent=MS.gene91640.t1 |
chr7.4 | CDS | 85643977 | 85644119 | 85643977 | ID=cds.MS.gene91640.t1;Parent=MS.gene91640.t1 |
chr7.4 | exon | 85644226 | 85644483 | 85644226 | ID=MS.gene91640.t1.exon2;Parent=MS.gene91640.t1 |
chr7.4 | CDS | 85644226 | 85644483 | 85644226 | ID=cds.MS.gene91640.t1;Parent=MS.gene91640.t1 |
chr7.4 | exon | 85644582 | 85644839 | 85644582 | ID=MS.gene91640.t1.exon3;Parent=MS.gene91640.t1 |
chr7.4 | CDS | 85644582 | 85644839 | 85644582 | ID=cds.MS.gene91640.t1;Parent=MS.gene91640.t1 |
chr7.4 | exon | 85644971 | 85645133 | 85644971 | ID=MS.gene91640.t1.exon4;Parent=MS.gene91640.t1 |
chr7.4 | CDS | 85644971 | 85645133 | 85644971 | ID=cds.MS.gene91640.t1;Parent=MS.gene91640.t1 |
Gene Sequence |
Protein sequence |