Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91691.t1 | BBN67251.1 | 82.2 | 107 | 19 | 0 | 13 | 119 | 42 | 148 | 1.70E-41 | 178.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91691.t1 | Q9LZD7 | 78.2 | 101 | 22 | 0 | 19 | 119 | 46 | 146 | 9.0e-39 | 161.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91691.t1 | A0A5H2XSC9 | 82.2 | 107 | 19 | 0 | 13 | 119 | 42 | 148 | 1.3e-41 | 178.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene91691.t1 | TR | MED7 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91691.t1 | MTR_6g471120 | 89.109 | 101 | 11 | 0 | 19 | 119 | 46 | 146 | 6.29e-60 | 182 |
| MS.gene91691.t1 | MTR_2g094720 | 88.119 | 101 | 12 | 0 | 19 | 119 | 46 | 146 | 2.05e-59 | 181 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91691.t1 | AT5G03500 | 78.218 | 101 | 22 | 0 | 19 | 119 | 46 | 146 | 2.82e-53 | 165 |
| MS.gene91691.t1 | AT5G03500 | 78.218 | 101 | 22 | 0 | 19 | 119 | 46 | 146 | 2.82e-53 | 165 |
| MS.gene91691.t1 | AT5G03500 | 78.218 | 101 | 22 | 0 | 19 | 119 | 46 | 146 | 2.82e-53 | 165 |
| MS.gene91691.t1 | AT5G03500 | 78.218 | 101 | 22 | 0 | 19 | 119 | 46 | 146 | 2.82e-53 | 165 |
| MS.gene91691.t1 | AT5G03500 | 78.218 | 101 | 22 | 0 | 19 | 119 | 46 | 146 | 2.82e-53 | 165 |
| MS.gene91691.t1 | AT5G03500 | 78.218 | 101 | 22 | 0 | 19 | 119 | 46 | 146 | 2.82e-53 | 165 |
| MS.gene91691.t1 | AT5G03500 | 78.218 | 101 | 22 | 0 | 19 | 119 | 56 | 156 | 2.96e-53 | 166 |
| MS.gene91691.t1 | AT5G03220 | 77.228 | 101 | 23 | 0 | 19 | 119 | 46 | 146 | 1.24e-52 | 164 |
Find 26 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACTGCAACTACACATTT+TGG | 0.235567 | 7.2:+39513567 | MS.gene91691:CDS |
| ATCAACATTGATTCACATTA+TGG | 0.247489 | 7.2:+39513825 | MS.gene91691:CDS |
| TATTGATTTGCCTCTTACTA+AGG | 0.368790 | 7.2:+39512187 | MS.gene91691:CDS |
| AAATTCATTGCATCCTCATC+AGG | 0.403386 | 7.2:+39513681 | MS.gene91691:CDS |
| CTTCCTCCACAGCTTGTTTG+CGG | 0.426923 | 7.2:-39513864 | None:intergenic |
| ACAAAATCAACCTTAGTAAG+AGG | 0.427064 | 7.2:-39512197 | None:intergenic |
| GATAGAGCTGGCGCACCCCT+TGG | 0.428730 | 7.2:-39512642 | None:intergenic |
| CGTACCAACATTCGGCCCCT+TGG | 0.453104 | 7.2:-39512665 | None:intergenic |
| AAAGATAGCGTACCAACATT+CGG | 0.494584 | 7.2:-39512673 | None:intergenic |
| GTACCAACATTCGGCCCCTT+GGG | 0.495917 | 7.2:-39512664 | None:intergenic |
| CAGCGACGTTCTACTAAGCT+TGG | 0.509261 | 7.2:+39512615 | MS.gene91691:CDS |
| CAAACAAGCTGTGGAGGAAG+AGG | 0.522632 | 7.2:+39513867 | MS.gene91691:CDS |
| TCGGCCCCTTGGGATAGAGC+TGG | 0.544781 | 7.2:-39512654 | None:intergenic |
| TATCCCAAGGGGCCGAATGT+TGG | 0.548924 | 7.2:+39512661 | MS.gene91691:CDS |
| CAAGCTTAGTAGAACGTCGC+TGG | 0.558886 | 7.2:-39512614 | None:intergenic |
| GTGCGCCAGCTCTATCCCAA+GGG | 0.563669 | 7.2:+39512649 | MS.gene91691:CDS |
| ACTCTTCTTGCATACTGTGA+CGG | 0.567945 | 7.2:-39513616 | None:intergenic |
| GGTGCGCCAGCTCTATCCCA+AGG | 0.568670 | 7.2:+39512648 | MS.gene91691:CDS |
| TACTAAGCTTGGAAGACCAA+GGG | 0.579399 | 7.2:+39512626 | MS.gene91691:CDS |
| AGAAGATTTAATACCTGATG+AGG | 0.580898 | 7.2:-39513694 | None:intergenic |
| AGAGCGCCGCAAACAAGCTG+TGG | 0.593090 | 7.2:+39513858 | MS.gene91691:CDS |
| CTACTAAGCTTGGAAGACCA+AGG | 0.625337 | 7.2:+39512625 | MS.gene91691:CDS |
| GCGCCGCAAACAAGCTGTGG+AGG | 0.625600 | 7.2:+39513861 | MS.gene91691:CDS |
| TGCGCCAGCTCTATCCCAAG+GGG | 0.660989 | 7.2:+39512650 | MS.gene91691:CDS |
| ACTAAGCTTGGAAGACCAAG+GGG | 0.673301 | 7.2:+39512627 | MS.gene91691:CDS |
| TAGATTTCAAGAAGGAACTG+AGG | 0.694233 | 7.2:+39513533 | MS.gene91691:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAAATCAAATAACAA+GGG | - | chr7.2:39513515-39513534 | None:intergenic | 10.0% |
| !! | ATATAAAATCAAATAACAAG+GGG | - | chr7.2:39513514-39513533 | None:intergenic | 15.0% |
| !! | CTATATAAAATCAAATAACA+AGG | - | chr7.2:39513516-39513535 | None:intergenic | 15.0% |
| !! | GAAACTAATTTCAAATTATA+TGG | - | chr7.2:39514212-39514231 | None:intergenic | 15.0% |
| !!! | AAAATTATTTAAAAGCATGT+AGG | - | chr7.2:39514903-39514922 | None:intergenic | 15.0% |
| !!! | ATTTTATATAGATTTCAAGA+AGG | + | chr7.2:39513525-39513544 | MS.gene91691:intron | 15.0% |
| !!! | CTAAGGATTTTTATTTTTTT+TGG | + | chr7.2:39514561-39514580 | MS.gene91691:intron | 15.0% |
| !!! | GTCTTATTTTAAACAATTTA+GGG | + | chr7.2:39514747-39514766 | MS.gene91691:intron | 15.0% |
| !!! | TGTCTTATTTTAAACAATTT+AGG | + | chr7.2:39514746-39514765 | MS.gene91691:intron | 15.0% |
| !!! | TTTATTTTCTCTATCATTAA+AGG | + | chr7.2:39513484-39513503 | MS.gene91691:intron | 15.0% |
| !! | AATAGATAAATAAATCGGTT+CGG | - | chr7.2:39514648-39514667 | None:intergenic | 20.0% |
| !! | GGTCAAATAGATAAATAAAT+CGG | - | chr7.2:39514653-39514672 | None:intergenic | 20.0% |
| !! | TATAAAATCAAATAACAAGG+GGG | - | chr7.2:39513513-39513532 | None:intergenic | 20.0% |
| !! | TCTCAATTAAAATAAGTATG+TGG | - | chr7.2:39514325-39514344 | None:intergenic | 20.0% |
| !! | TTATGAAGCAATGATTATTT+AGG | - | chr7.2:39513402-39513421 | None:intergenic | 20.0% |
| !!! | AGAGATTTTAACAGTTTTTT+TGG | + | chr7.2:39513991-39514010 | MS.gene91691:intron | 20.0% |
| !!! | GATTTTGTTTCTTATGTTTA+TGG | + | chr7.2:39512212-39512231 | MS.gene91691:intron | 20.0% |
| !!! | TACTAAACAAACTTTTGAAA+AGG | - | chr7.2:39512328-39512347 | None:intergenic | 20.0% |
| !!! | TCATTCTTTTTTAGTTTTCT+TGG | + | chr7.2:39513762-39513781 | MS.gene91691:intron | 20.0% |
| !!! | TTAAACTAGTTCATTCTTTT+GGG | + | chr7.2:39514400-39514419 | MS.gene91691:intron | 20.0% |
| !!! | TTTCAAAAGTTTGTTTAGTA+AGG | + | chr7.2:39512328-39512347 | MS.gene91691:intron | 20.0% |
| !!! | TTTCTTTTGTTTTGAAAACT+CGG | + | chr7.2:39512784-39512803 | MS.gene91691:intron | 20.0% |
| !!! | TTTTATAGGTTTATGATGAT+TGG | + | chr7.2:39512391-39512410 | MS.gene91691:intron | 20.0% |
| ! | AAAATGAAAGCTAATCCAAA+CGG | + | chr7.2:39514354-39514373 | MS.gene91691:intron | 25.0% |
| ! | AAATCCAACTAAAAATCACA+AGG | - | chr7.2:39514616-39514635 | None:intergenic | 25.0% |
| ! | AATCACTCAAATTATGACAT+GGG | - | chr7.2:39513443-39513462 | None:intergenic | 25.0% |
| ! | AATCCAACTAAAAATCACAA+GGG | - | chr7.2:39514615-39514634 | None:intergenic | 25.0% |
| ! | ATCTCTCATATAATATAGCA+AGG | - | chr7.2:39513977-39513996 | None:intergenic | 25.0% |
| ! | CATGGAAACAAACAAAATAT+TGG | - | chr7.2:39515159-39515178 | None:intergenic | 25.0% |
| ! | TAACTGATGTAAATGTGATT+TGG | - | chr7.2:39513213-39513232 | None:intergenic | 25.0% |
| ! | TACAAAATGAGTTAAATCCA+TGG | - | chr7.2:39514089-39514108 | None:intergenic | 25.0% |
| ! | TCAAATTATATGGAATGTTG+TGG | - | chr7.2:39514202-39514221 | None:intergenic | 25.0% |
| !! | ATCTTTCACATTTTCAGTTT+TGG | + | chr7.2:39513011-39513030 | MS.gene91691:intron | 25.0% |
| !! | ATGAGAATTTTATCTAAACC+TGG | - | chr7.2:39514121-39514140 | None:intergenic | 25.0% |
| !! | ATTACAATTTTGAACACACT+AGG | + | chr7.2:39513293-39513312 | MS.gene91691:intron | 25.0% |
| !! | CAAAAGAATGAACTAGTTTA+AGG | - | chr7.2:39514401-39514420 | None:intergenic | 25.0% |
| !! | CTATGATTCTGATATTTCTA+TGG | + | chr7.2:39514589-39514608 | MS.gene91691:intron | 25.0% |
| !! | CTTAAACTAGTTCATTCTTT+TGG | + | chr7.2:39514399-39514418 | MS.gene91691:intron | 25.0% |
| !! | TAAACTAGTTCATTCTTTTG+GGG | + | chr7.2:39514401-39514420 | MS.gene91691:intron | 25.0% |
| !! | TTGTTTCTTATGTTTATGGT+TGG | + | chr7.2:39512216-39512235 | MS.gene91691:intron | 25.0% |
| !! | TTTCCTAACATTTTCCTTAA+TGG | + | chr7.2:39513901-39513920 | MS.gene91691:intron | 25.0% |
| !!! | AGTTTTTTCTGTCTTTTCAT+CGG | - | chr7.2:39515026-39515045 | None:intergenic | 25.0% |
| !!! | ATCAACATTGATTCACATTA+TGG | + | chr7.2:39513825-39513844 | MS.gene91691:CDS | 25.0% |
| !!! | ATTATTTTTAACGACTCACA+TGG | - | chr7.2:39512756-39512775 | None:intergenic | 25.0% |
| !!! | CAATATTCTTCTTACTTTTC+TGG | + | chr7.2:39512899-39512918 | MS.gene91691:intron | 25.0% |
| !!! | GTGATTTTTAGTTGGATTTA+AGG | + | chr7.2:39514617-39514636 | MS.gene91691:intron | 25.0% |
| AAATGAAAGCTAATCCAAAC+GGG | + | chr7.2:39514355-39514374 | MS.gene91691:intron | 30.0% | |
| AAATTCTCATGAAGCTCTTA+TGG | + | chr7.2:39514131-39514150 | MS.gene91691:intron | 30.0% | |
| AACTCTAGTTAATTCCCAAA+TGG | + | chr7.2:39514842-39514861 | MS.gene91691:intron | 30.0% | |
| AATAAGACAATATCACAACG+AGG | - | chr7.2:39514735-39514754 | None:intergenic | 30.0% | |
| AATTCTCATGAAGCTCTTAT+GGG | + | chr7.2:39514132-39514151 | MS.gene91691:intron | 30.0% | |
| ACAAAATCAACCTTAGTAAG+AGG | - | chr7.2:39512200-39512219 | None:intergenic | 30.0% | |
| ACACATGATTTCTATCTAGT+TGG | + | chr7.2:39512357-39512376 | MS.gene91691:intron | 30.0% | |
| ACATTAAGCATTTACTCTTC+AGG | + | chr7.2:39513798-39513817 | MS.gene91691:intron | 30.0% | |
| AGAAGATTTAATACCTGATG+AGG | - | chr7.2:39513697-39513716 | None:intergenic | 30.0% | |
| ATAAGAACAAAAGATTGCCT+AGG | - | chr7.2:39513936-39513955 | None:intergenic | 30.0% | |
| ATGATTTCTATCTAGTTGGT+TGG | + | chr7.2:39512361-39512380 | MS.gene91691:intron | 30.0% | |
| CAAAACAAAGCATATTCATG+TGG | - | chr7.2:39512974-39512993 | None:intergenic | 30.0% | |
| CAATCACTCAAATTATGACA+TGG | - | chr7.2:39513444-39513463 | None:intergenic | 30.0% | |
| CATGTCATAATTTGAGTGAT+TGG | + | chr7.2:39513442-39513461 | MS.gene91691:intron | 30.0% | |
| GAAATACATAAGCTTTGCTT+TGG | - | chr7.2:39512880-39512899 | None:intergenic | 30.0% | |
| GAATGAAGCATGAAAATGAA+TGG | - | chr7.2:39513748-39513767 | None:intergenic | 30.0% | |
| GCATCATAAGATTCTCTTAA+TGG | - | chr7.2:39514165-39514184 | None:intergenic | 30.0% | |
| GTACCATTAAGGAAAATGTT+AGG | - | chr7.2:39513907-39513926 | None:intergenic | 30.0% | |
| GTATTTAGTGACATAACATG+TGG | - | chr7.2:39513191-39513210 | None:intergenic | 30.0% | |
| GTCTCTTTACACTTAAATGA+TGG | - | chr7.2:39514039-39514058 | None:intergenic | 30.0% | |
| GTTATTAGAGATTTCACTGT+AGG | + | chr7.2:39513229-39513248 | MS.gene91691:intron | 30.0% | |
| TAAGAACAAAAGATTGCCTA+GGG | - | chr7.2:39513935-39513954 | None:intergenic | 30.0% | |
| TAGGAAAACATGAACCATTT+GGG | - | chr7.2:39514859-39514878 | None:intergenic | 30.0% | |
| TGTTGTGGTTTAAAAAACTC+AGG | - | chr7.2:39514187-39514206 | None:intergenic | 30.0% | |
| TTAACTGCTCAATTTGAATC+TGG | + | chr7.2:39512711-39512730 | MS.gene91691:intron | 30.0% | |
| TTAGGAAAACATGAACCATT+TGG | - | chr7.2:39514860-39514879 | None:intergenic | 30.0% | |
| TTCAATCCTCCAATCATAAA+CGG | - | chr7.2:39512455-39512474 | None:intergenic | 30.0% | |
| TTTATGATTGGAGGATTGAA+TGG | + | chr7.2:39512455-39512474 | MS.gene91691:intron | 30.0% | |
| ! | AGAGTATTACTAGACATACA+TGG | - | chr7.2:39515177-39515196 | None:intergenic | 30.0% |
| ! | TAAACAATTTAGGGTTTGTC+TGG | + | chr7.2:39514756-39514775 | MS.gene91691:intron | 30.0% |
| ! | TGTTTTCCTAAGAGAAACAT+CGG | + | chr7.2:39514869-39514888 | MS.gene91691:intron | 30.0% |
| ! | TTTGTACAATTTTCCATGAG+AGG | + | chr7.2:39514956-39514975 | MS.gene91691:intron | 30.0% |
| ! | TTTTGGTGGAAATTACACTA+AGG | + | chr7.2:39514544-39514563 | MS.gene91691:intron | 30.0% |
| !! | GGAATTAACTAGAGTTGATA+TGG | - | chr7.2:39514838-39514857 | None:intergenic | 30.0% |
| !! | TAAGGTCTGTGTTTTATTGT+CGG | + | chr7.2:39512535-39512554 | MS.gene91691:intron | 30.0% |
| !! | TATTGATTTGCCTCTTACTA+AGG | + | chr7.2:39512187-39512206 | MS.gene91691:CDS | 30.0% |
| !! | TTTCTTCGTATAGTTTTGCA+GGG | + | chr7.2:39512503-39512522 | MS.gene91691:intron | 30.0% |
| !!! | CACATGAATATGCTTTGTTT+TGG | + | chr7.2:39512972-39512991 | MS.gene91691:intron | 30.0% |
| !!! | TGGTTGGTATGGTTTTTTAT+AGG | + | chr7.2:39512377-39512396 | MS.gene91691:intron | 30.0% |
| !!! | TTGAGTTGAATTTTGTTGTC+AGG | + | chr7.2:39515122-39515141 | MS.gene91691:intron | 30.0% |
| AAAGATAGCGTACCAACATT+CGG | - | chr7.2:39512676-39512695 | None:intergenic | 35.0% | |
| AAATTCATTGCATCCTCATC+AGG | + | chr7.2:39513681-39513700 | MS.gene91691:CDS | 35.0% | |
| AATGAAAGCTAATCCAAACG+GGG | + | chr7.2:39514356-39514375 | MS.gene91691:intron | 35.0% | |
| ACTCGAATATATACCTCTCA+TGG | - | chr7.2:39514972-39514991 | None:intergenic | 35.0% | |
| AGGAGTTCTTGCAAAATGAT+TGG | - | chr7.2:39512308-39512327 | None:intergenic | 35.0% | |
| CTGGTCTACGTAAAAAACAA+AGG | - | chr7.2:39512598-39512617 | None:intergenic | 35.0% | |
| CTTAATGGTACAAAAACCCT+AGG | + | chr7.2:39513916-39513935 | MS.gene91691:intron | 35.0% | |
| GACAATAAAACACAGACCTT+AGG | - | chr7.2:39512536-39512555 | None:intergenic | 35.0% | |
| GTAAAACCGATGTTTCTCTT+AGG | - | chr7.2:39514878-39514897 | None:intergenic | 35.0% | |
| TAGATTTCAAGAAGGAACTG+AGG | + | chr7.2:39513533-39513552 | MS.gene91691:intron | 35.0% | |
| TCAATCCTCCAATCATAAAC+GGG | - | chr7.2:39512454-39512473 | None:intergenic | 35.0% | |
| TGTGAAAGATAAACCTACAG+AGG | - | chr7.2:39513001-39513020 | None:intergenic | 35.0% | |
| ! | ACACTAGGTTCTCTCAATTT+TGG | + | chr7.2:39513308-39513327 | MS.gene91691:intron | 35.0% |
| ! | ACTTCTGTGCTCAATCTTTT+AGG | + | chr7.2:39513076-39513095 | MS.gene91691:intron | 35.0% |
| ! | AGAACTGCAACTACACATTT+TGG | + | chr7.2:39513567-39513586 | MS.gene91691:CDS | 35.0% |
| ! | CTAGGGTTTTTGTACCATTA+AGG | - | chr7.2:39513918-39513937 | None:intergenic | 35.0% |
| ! | GAAGGGACTTACATTTGTTT+TGG | + | chr7.2:39514527-39514546 | MS.gene91691:intron | 35.0% |
| ! | TTATTGTCGGGATCTCTTTT+AGG | + | chr7.2:39512548-39512567 | MS.gene91691:intron | 35.0% |
| ! | TTCTATCTAGTTGGTTGGTA+TGG | + | chr7.2:39512366-39512385 | MS.gene91691:intron | 35.0% |
| !! | AAGGTCTGTGTTTTATTGTC+GGG | + | chr7.2:39512536-39512555 | MS.gene91691:intron | 35.0% |
| !! | AAGTTGATAGTTCTGTGTTG+AGG | + | chr7.2:39513103-39513122 | MS.gene91691:intron | 35.0% |
| !! | AGCTTTGCTTTGGCTTTAAA+TGG | - | chr7.2:39512870-39512889 | None:intergenic | 35.0% |
| !! | CTTTGCTTTGGCTTTAAATG+GGG | - | chr7.2:39512868-39512887 | None:intergenic | 35.0% |
| !! | GCTTTGCTTTGGCTTTAAAT+GGG | - | chr7.2:39512869-39512888 | None:intergenic | 35.0% |
| !! | GTTTCTTCGTATAGTTTTGC+AGG | + | chr7.2:39512502-39512521 | MS.gene91691:intron | 35.0% |
| !! | TTTTCTGGTATGTTGTCTTG+CGG | + | chr7.2:39512914-39512933 | MS.gene91691:intron | 35.0% |
| !!! | TTTGTTTTGGTAACCTCTGT+AGG | + | chr7.2:39512985-39513004 | MS.gene91691:intron | 35.0% |
| AACTATACGAAGAAACCCTG+TGG | - | chr7.2:39512498-39512517 | None:intergenic | 40.0% | |
| AATCCTCCAATCATAAACGG+GGG | - | chr7.2:39512452-39512471 | None:intergenic | 40.0% | |
| ACTCTTCTTGCATACTGTGA+CGG | - | chr7.2:39513619-39513638 | None:intergenic | 40.0% | |
| AGGTCAGTGTCACAAAACTT+TGG | - | chr7.2:39514674-39514693 | None:intergenic | 40.0% | |
| CAAATGTAAGTCCCTTCGAT+TGG | - | chr7.2:39514524-39514543 | None:intergenic | 40.0% | |
| CAATCCTCCAATCATAAACG+GGG | - | chr7.2:39512453-39512472 | None:intergenic | 40.0% | |
| CGATCACAAAAGTCACTACT+TGG | + | chr7.2:39513137-39513156 | MS.gene91691:intron | 40.0% | |
| CTAAGGATCGACTAATCCAA+GGG | + | chr7.2:39512815-39512834 | MS.gene91691:intron | 40.0% | |
| TACTAAGCTTGGAAGACCAA+GGG | + | chr7.2:39512626-39512645 | MS.gene91691:CDS | 40.0% | |
| TCCATGGTTCAGACTTAAGA+CGG | - | chr7.2:39514073-39514092 | None:intergenic | 40.0% | |
| TTTCGTAAGTTCTCCAAGTC+AGG | - | chr7.2:39514694-39514713 | None:intergenic | 40.0% | |
| ! | GAATTTGTGCTGTTACCACA+GGG | + | chr7.2:39512480-39512499 | MS.gene91691:intron | 40.0% |
| ! | TGAATTTGTGCTGTTACCAC+AGG | + | chr7.2:39512479-39512498 | MS.gene91691:intron | 40.0% |
| ! | TTTGCAGGGTAGTTTTCCTA+AGG | + | chr7.2:39512517-39512536 | MS.gene91691:intron | 40.0% |
| !!! | CATTCTTTTGGGGTGTACTA+AGG | + | chr7.2:39514411-39514430 | MS.gene91691:intron | 40.0% |
| !!! | CATTTTGTACTTCTAGAGCC+AGG | + | chr7.2:39514100-39514119 | MS.gene91691:intron | 40.0% |
| !!! | GGGACTTACATTTGTTTTGG+TGG | + | chr7.2:39514530-39514549 | MS.gene91691:intron | 40.0% |
| !!! | TGGCCCTTGTGATTTTTAGT+TGG | + | chr7.2:39514609-39514628 | MS.gene91691:intron | 40.0% |
| AAAACTCGGTATCCGTCCTA+AGG | + | chr7.2:39512798-39512817 | MS.gene91691:intron | 45.0% | |
| ACCGTCTTAAGTCTGAACCA+TGG | + | chr7.2:39514069-39514088 | MS.gene91691:intron | 45.0% | |
| ACTAAGCTTGGAAGACCAAG+GGG | + | chr7.2:39512627-39512646 | MS.gene91691:CDS | 45.0% | |
| ATGTAAGTCCCTTCGATTGG+CGG | - | chr7.2:39514521-39514540 | None:intergenic | 45.0% | |
| CCTAAGGATCGACTAATCCA+AGG | + | chr7.2:39512814-39512833 | MS.gene91691:intron | 45.0% | |
| CTACTAAGCTTGGAAGACCA+AGG | + | chr7.2:39512625-39512644 | MS.gene91691:CDS | 45.0% | |
| GCAAGGACATTTCACTACGA+TGG | - | chr7.2:39513960-39513979 | None:intergenic | 45.0% | |
| TAATCCATGAATGCCCCGTT+TGG | - | chr7.2:39514372-39514391 | None:intergenic | 45.0% | |
| TTTGTGACACTGACCTGACT+TGG | + | chr7.2:39514678-39514697 | MS.gene91691:intron | 45.0% | |
| ! | TAATCCAAACGGGGCATTCA+TGG | + | chr7.2:39514365-39514384 | MS.gene91691:intron | 45.0% |
| ! | TCTGTCTTTTCATCGGTCAC+AGG | - | chr7.2:39515019-39515038 | None:intergenic | 45.0% |
| !! | CCTTGGATTAGTCGATCCTT+AGG | - | chr7.2:39512817-39512836 | None:intergenic | 45.0% |
| !! | GGATTAGTCGATCCTTAGGA+CGG | - | chr7.2:39512813-39512832 | None:intergenic | 45.0% |
| ATGTTGTCTTGCGGTGGTTC+TGG | + | chr7.2:39512923-39512942 | MS.gene91691:intron | 50.0% | |
| CAAACAAGCTGTGGAGGAAG+AGG | + | chr7.2:39513867-39513886 | MS.gene91691:CDS | 50.0% | |
| CAAGCTTAGTAGAACGTCGC+TGG | - | chr7.2:39512617-39512636 | None:intergenic | 50.0% | |
| CAATCATAAACGGGGGAGGA+GGG | - | chr7.2:39512445-39512464 | None:intergenic | 50.0% | |
| CAGCGACGTTCTACTAAGCT+TGG | + | chr7.2:39512615-39512634 | MS.gene91691:CDS | 50.0% | |
| TCTGGTATGTTGTCTTGCGG+TGG | + | chr7.2:39512917-39512936 | MS.gene91691:intron | 50.0% | |
| TGTGGCAAAAGAAAGAGCCG+AGG | - | chr7.2:39513173-39513192 | None:intergenic | 50.0% | |
| ! | CTTCCTCCACAGCTTGTTTG+CGG | - | chr7.2:39513867-39513886 | None:intergenic | 50.0% |
| !! | TACTTGGTGTTACGTCGCCT+CGG | + | chr7.2:39513153-39513172 | MS.gene91691:intron | 50.0% |
| AACCTACCGTCCACTTGCGA+CGG | + | chr7.2:39512842-39512861 | MS.gene91691:intron | 55.0% | |
| CCAATCATAAACGGGGGAGG+AGG | - | chr7.2:39512446-39512465 | None:intergenic | 55.0% | |
| CCTCCAATCATAAACGGGGG+AGG | - | chr7.2:39512449-39512468 | None:intergenic | 55.0% | |
| CCTCCCCCGTTTATGATTGG+AGG | + | chr7.2:39512446-39512465 | MS.gene91691:intron | 55.0% | |
| CCTCCTCCCCCGTTTATGAT+TGG | + | chr7.2:39512443-39512462 | MS.gene91691:intron | 55.0% | |
| GTACCAACATTCGGCCCCTT+GGG | - | chr7.2:39512667-39512686 | None:intergenic | 55.0% | |
| TAAGTCCCTTCGATTGGCGG+TGG | - | chr7.2:39514518-39514537 | None:intergenic | 55.0% | |
| TATCCCAAGGGGCCGAATGT+TGG | + | chr7.2:39512661-39512680 | MS.gene91691:CDS | 55.0% | |
| TCGCAAGTGGACGGTAGGTT+TGG | - | chr7.2:39512842-39512861 | None:intergenic | 55.0% | |
| TTAAATGGGGCCGTCGCAAG+TGG | - | chr7.2:39512855-39512874 | None:intergenic | 55.0% | |
| AGCCTCCACCGCCAATCGAA+GGG | + | chr7.2:39514510-39514529 | MS.gene91691:intron | 60.0% | |
| CGTACCAACATTCGGCCCCT+TGG | - | chr7.2:39512668-39512687 | None:intergenic | 60.0% | |
| GGACGGTAGGTTTGGACCCT+TGG | - | chr7.2:39512834-39512853 | None:intergenic | 60.0% | |
| GTGCGCCAGCTCTATCCCAA+GGG | + | chr7.2:39512649-39512668 | MS.gene91691:CDS | 60.0% | |
| TCATAAACGGGGGAGGAGGG+AGG | - | chr7.2:39512442-39512461 | None:intergenic | 60.0% | |
| TGCGCCAGCTCTATCCCAAG+GGG | + | chr7.2:39512650-39512669 | MS.gene91691:CDS | 60.0% | |
| !! | AGAGCGCCGCAAACAAGCTG+TGG | + | chr7.2:39513858-39513877 | MS.gene91691:CDS | 60.0% |
| ATGGGGCCGTCGCAAGTGGA+CGG | - | chr7.2:39512851-39512870 | None:intergenic | 65.0% | |
| GAGCCTCCACCGCCAATCGA+AGG | + | chr7.2:39514509-39514528 | MS.gene91691:intron | 65.0% | |
| GATAGAGCTGGCGCACCCCT+TGG | - | chr7.2:39512645-39512664 | None:intergenic | 65.0% | |
| GCGCCGCAAACAAGCTGTGG+AGG | + | chr7.2:39513861-39513880 | MS.gene91691:CDS | 65.0% | |
| GGTGCGCCAGCTCTATCCCA+AGG | + | chr7.2:39512648-39512667 | MS.gene91691:CDS | 65.0% | |
| GTCCCTTCGATTGGCGGTGG+AGG | - | chr7.2:39514515-39514534 | None:intergenic | 65.0% | |
| TCGATTGGCGGTGGAGGCTC+TGG | - | chr7.2:39514509-39514528 | None:intergenic | 65.0% | |
| TCGGCCCCTTGGGATAGAGC+TGG | - | chr7.2:39512657-39512676 | None:intergenic | 65.0% | |
| GGCCGTCGCAAGTGGACGGT+AGG | - | chr7.2:39512847-39512866 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 39512155 | 39515252 | 39512155 | ID=MS.gene91691 |
| chr7.2 | mRNA | 39512155 | 39515252 | 39512155 | ID=MS.gene91691.t1;Parent=MS.gene91691 |
| chr7.2 | exon | 39512155 | 39512208 | 39512155 | ID=MS.gene91691.t1.exon1;Parent=MS.gene91691.t1 |
| chr7.2 | CDS | 39512155 | 39512208 | 39512155 | ID=cds.MS.gene91691.t1;Parent=MS.gene91691.t1 |
| chr7.2 | exon | 39512613 | 39512682 | 39512613 | ID=MS.gene91691.t1.exon2;Parent=MS.gene91691.t1 |
| chr7.2 | CDS | 39512613 | 39512682 | 39512613 | ID=cds.MS.gene91691.t1;Parent=MS.gene91691.t1 |
| chr7.2 | exon | 39513536 | 39513702 | 39513536 | ID=MS.gene91691.t1.exon3;Parent=MS.gene91691.t1 |
| chr7.2 | CDS | 39513536 | 39513702 | 39513536 | ID=cds.MS.gene91691.t1;Parent=MS.gene91691.t1 |
| chr7.2 | exon | 39513820 | 39513888 | 39513820 | ID=MS.gene91691.t1.exon4;Parent=MS.gene91691.t1 |
| chr7.2 | CDS | 39513820 | 39513888 | 39513820 | ID=cds.MS.gene91691.t1;Parent=MS.gene91691.t1 |
| chr7.2 | exon | 39515217 | 39515252 | 39515217 | ID=MS.gene91691.t1.exon5;Parent=MS.gene91691.t1 |
| chr7.2 | CDS | 39515217 | 39515252 | 39515217 | ID=cds.MS.gene91691.t1;Parent=MS.gene91691.t1 |
| Gene Sequence |
| Protein sequence |
