AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91751

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91751.t1 MTR_7g059400 92.113 355 21 2 1 355 1 348 0.0 555
MS.gene91751.t1 MTR_4g022370 48.052 385 125 16 1 342 1 353 1.17e-87 268
MS.gene91751.t1 MTR_4g063780 43.343 353 156 11 1 331 1 331 3.00e-72 228
MS.gene91751.t1 MTR_2g096740 40.357 280 107 10 1 260 1 240 4.65e-50 169
MS.gene91751.t1 MTR_7g024670 55.479 146 57 4 1 142 1 142 1.61e-44 157
MS.gene91751.t1 MTR_2g096740 40.076 262 118 11 1 260 1 225 4.68e-44 154
MS.gene91751.t1 MTR_8g479350 56.000 100 38 1 77 170 69 168 1.44e-31 122
MS.gene91751.t1 MTR_3g090430 63.750 80 29 0 57 136 32 111 1.47e-30 119
MS.gene91751.t1 MTR_3g091820 66.667 75 21 1 57 131 28 98 7.38e-30 116
MS.gene91751.t1 MTR_5g031440 59.633 109 39 1 73 181 40 143 1.24e-29 116
MS.gene91751.t1 MTR_3g077750 63.636 88 25 3 43 126 27 111 1.59e-29 116
MS.gene91751.t1 MTR_2g093220 78.689 61 13 0 70 130 34 94 1.74e-29 115
MS.gene91751.t1 MTR_8g068210 73.438 64 17 0 72 135 28 91 2.85e-29 115
MS.gene91751.t1 MTR_4g461080 81.356 59 11 0 70 128 23 81 3.71e-29 114
MS.gene91751.t1 MTR_8g079060 60.000 105 25 4 55 151 17 112 1.15e-28 111
MS.gene91751.t1 MTR_2g014060 67.606 71 22 1 58 127 6 76 1.71e-28 113
MS.gene91751.t1 MTR_4g109980 90.000 50 5 0 77 126 41 90 5.99e-28 111
MS.gene91751.t1 MTR_8g015840 73.913 69 15 2 68 136 13 78 7.57e-28 108
MS.gene91751.t1 MTR_1g056810 80.357 56 11 0 75 130 11 66 8.72e-28 110
MS.gene91751.t1 MTR_8g027295 71.014 69 16 1 78 142 26 94 8.91e-28 110
MS.gene91751.t1 MTR_2g014170 89.583 48 5 0 77 124 46 93 1.33e-26 107
MS.gene91751.t1 MTR_2g013370 65.278 72 16 2 69 132 31 101 2.42e-26 106
MS.gene91751.t1 MTR_4g089095 81.818 55 9 1 78 132 52 105 2.63e-26 106
MS.gene91751.t1 MTR_4g089095 81.818 55 9 1 78 132 18 71 3.06e-26 105
MS.gene91751.t1 MTR_1g077600 52.439 82 37 1 53 132 18 99 5.20e-26 105
MS.gene91751.t1 MTR_1g077600 52.439 82 37 1 53 132 18 99 6.12e-26 105
MS.gene91751.t1 MTR_2g059540 87.500 48 6 0 77 124 32 79 1.44e-25 102
MS.gene91751.t1 MTR_6g012450 71.429 56 16 0 78 133 138 193 3.34e-23 100
MS.gene91751.t1 MTR_7g086780 42.982 114 54 1 77 179 100 213 3.95e-23 100
MS.gene91751.t1 MTR_3g435480 68.421 57 18 0 78 134 138 194 6.24e-23 99.8
MS.gene91751.t1 MTR_7g010950 61.194 67 26 0 78 144 137 203 7.94e-23 99.8
MS.gene91751.t1 MTR_2g016030 53.247 77 33 1 78 154 49 122 8.59e-23 93.6
MS.gene91751.t1 MTR_8g044220 68.519 54 17 0 78 131 120 173 1.03e-22 99.0
MS.gene91751.t1 MTR_6g027450 66.667 54 18 0 77 130 90 143 6.16e-22 95.5
MS.gene91751.t1 MTR_4g082060 69.231 52 16 0 78 129 124 175 7.16e-22 96.7
MS.gene91751.t1 MTR_5g041420 61.290 62 24 0 78 139 140 201 2.58e-21 93.6
MS.gene91751.t1 MTR_5g041400 58.667 75 25 1 78 152 121 189 2.63e-21 94.0
MS.gene91751.t1 MTR_5g041380 66.102 59 20 0 78 136 129 187 9.61e-21 92.4
MS.gene91751.t1 MTR_6g027460 57.377 61 24 1 71 129 89 149 1.31e-20 92.0
MS.gene91751.t1 MTR_5g041530 69.231 52 16 0 78 129 142 193 1.81e-20 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91751.t1 AT3G55370 38.120 383 156 18 1 340 1 345 3.90e-52 176
MS.gene91751.t1 AT3G55370 38.525 366 147 17 1 340 1 314 3.73e-51 173
MS.gene91751.t1 AT3G55370 40.385 312 123 14 48 340 92 359 3.18e-46 161
MS.gene91751.t1 AT2G37590 40.580 276 107 9 1 240 1 255 3.35e-45 158
MS.gene91751.t1 AT5G02460 86.842 76 10 0 55 130 74 149 7.73e-44 156
MS.gene91751.t1 AT1G07640 73.418 79 21 0 58 136 3 81 1.02e-36 134
MS.gene91751.t1 AT1G07640 73.418 79 21 0 58 136 59 137 1.50e-36 135
MS.gene91751.t1 AT1G07640 73.418 79 21 0 58 136 67 145 1.99e-36 135
MS.gene91751.t1 AT2G28810 46.711 152 49 6 1 127 1 145 2.28e-34 129
MS.gene91751.t1 AT5G60200 69.512 82 22 1 73 151 52 133 1.69e-33 125
MS.gene91751.t1 AT2G28810 74.648 71 17 1 58 127 58 128 3.10e-32 123
MS.gene91751.t1 AT5G60850 61.957 92 32 1 63 154 38 126 3.79e-32 122
MS.gene91751.t1 AT3G52440 72.464 69 19 0 73 141 22 90 4.91e-31 118
MS.gene91751.t1 AT3G52440 72.464 69 19 0 73 141 41 109 7.08e-31 118
MS.gene91751.t1 AT3G45610 68.571 70 22 0 73 142 37 106 1.24e-30 117
MS.gene91751.t1 AT3G21270 49.635 137 56 3 77 213 30 153 4.72e-30 114
MS.gene91751.t1 AT1G51700 67.500 80 24 2 69 147 27 105 4.93e-30 114
MS.gene91751.t1 AT5G65590 54.639 97 37 2 35 131 7 96 6.90e-30 117
MS.gene91751.t1 AT1G28310 83.929 56 9 0 77 132 28 83 3.00e-29 115
MS.gene91751.t1 AT1G28310 83.929 56 9 0 77 132 52 107 4.85e-29 115
MS.gene91751.t1 AT1G21340 61.176 85 31 1 78 162 40 122 6.60e-29 112
MS.gene91751.t1 AT4G21050 40.476 168 72 4 74 213 22 189 6.81e-29 111
MS.gene91751.t1 AT5G62940 47.656 128 60 4 1 126 1 123 5.81e-28 112
MS.gene91751.t1 AT5G66940 51.351 111 42 4 37 145 2 102 9.97e-28 108
MS.gene91751.t1 AT3G61850 45.985 137 55 5 10 133 1 131 1.03e-27 110
MS.gene91751.t1 AT3G50410 56.818 88 35 2 49 133 1 88 1.06e-27 109
MS.gene91751.t1 AT4G38000 61.446 83 31 1 70 152 35 116 1.29e-27 109
MS.gene91751.t1 AT3G61850 54.455 101 41 3 38 133 19 119 1.54e-27 109
MS.gene91751.t1 AT3G61850 54.455 101 41 3 38 133 19 119 1.54e-27 109
MS.gene91751.t1 AT3G61850 45.985 137 55 5 10 133 1 131 1.58e-27 110
MS.gene91751.t1 AT3G61850 54.455 101 41 3 38 133 19 119 2.12e-27 110
MS.gene91751.t1 AT4G24060 72.131 61 17 0 70 130 47 107 2.75e-27 110
MS.gene91751.t1 AT4G00940 74.576 59 14 1 72 130 65 122 6.31e-26 105
MS.gene91751.t1 AT4G00940 74.576 59 14 1 72 130 65 122 6.31e-26 105
MS.gene91751.t1 AT4G00940 74.576 59 14 1 72 130 65 122 6.31e-26 105
MS.gene91751.t1 AT2G28510 38.710 248 105 10 75 322 47 247 2.61e-25 103
MS.gene91751.t1 AT2G46590 77.358 53 10 1 73 123 63 115 9.39e-24 100
MS.gene91751.t1 AT2G46590 77.358 53 10 1 73 123 75 127 1.07e-23 100
MS.gene91751.t1 AT1G64620 47.020 151 59 5 70 213 43 179 1.22e-23 100
MS.gene91751.t1 AT5G62430 73.077 52 14 0 78 129 56 107 1.63e-23 99.4
MS.gene91751.t1 AT3G47500 63.636 66 24 0 78 143 112 177 2.79e-23 100
MS.gene91751.t1 AT1G47655 78.723 47 10 0 78 124 31 77 1.75e-22 94.4
MS.gene91751.t1 AT2G34140 71.154 52 15 0 78 129 60 111 3.17e-22 92.4
MS.gene91751.t1 AT1G26790 69.231 52 16 0 78 129 113 164 3.26e-22 96.7
MS.gene91751.t1 AT1G29160 71.154 52 15 0 78 129 64 115 3.55e-22 92.4
MS.gene91751.t1 AT4G21040 72.727 55 14 1 78 132 27 80 5.43e-22 93.6
MS.gene91751.t1 AT5G39660 71.154 52 15 0 78 129 140 191 1.08e-21 96.3
MS.gene91751.t1 AT5G39660 71.154 52 15 0 78 129 140 191 1.08e-21 96.3
MS.gene91751.t1 AT5G39660 71.154 52 15 0 78 129 140 191 1.08e-21 96.3
MS.gene91751.t1 AT1G69570 69.231 52 16 0 78 129 134 185 2.95e-21 94.4
MS.gene91751.t1 AT4G21080 53.165 79 33 1 78 156 27 101 7.71e-21 90.9
MS.gene91751.t1 AT4G21030 42.667 75 43 0 74 148 19 93 1.15e-13 69.3

Find 112 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCAACCGGGACACTTCTA+AGG 0.192890 7.2:-38036506 None:intergenic
TACTTCTCTCCCACCATATA+TGG 0.222301 7.2:+38036006 MS.gene91751:CDS
TTCCAATATTGTTCACTATT+AGG 0.263046 7.2:-38037107 None:intergenic
AAATAATTCTAGTGTGAAAA+TGG 0.280136 7.2:+38037010 MS.gene91751:CDS
ATCTCATCGGTGGTGGCGTT+GGG 0.300347 7.2:-38036644 None:intergenic
TTCCATATCGGAAGCTCTTT+AGG 0.302834 7.2:+38036762 MS.gene91751:CDS
GGTGATCACCTAAGTGAAAT+AGG 0.308942 7.2:+38036690 MS.gene91751:CDS
ATCCTAATAGTGAACAATAT+TGG 0.316935 7.2:+38037105 MS.gene91751:CDS
GAATCAATCTAGACAATTCT+TGG 0.322625 7.2:+38037037 MS.gene91751:CDS
GCAAGGCTTGTCGAAGGTAT+TGG 0.355195 7.2:+38036469 MS.gene91751:CDS
CACCTAAAGAGCTTCCGATA+TGG 0.360566 7.2:-38036764 None:intergenic
AGTTGTTTGTAGAGCTAGTT+TGG 0.376308 7.2:-38036602 None:intergenic
TGCATATGGTGGTGTGTCTA+AGG 0.387509 7.2:+38036980 MS.gene91751:CDS
CTTCGGCAACCACCGCCAAC+CGG 0.399525 7.2:-38036519 None:intergenic
CATGAGGTTGCGATGGTGTC+AGG 0.399816 7.2:-38036293 None:intergenic
ACCTGTTGATGCCAGTTGGC+TGG 0.401216 7.2:-38036031 None:intergenic
CAGTTGGCTGGATCCATATA+TGG 0.404780 7.2:-38036019 None:intergenic
AATCTCATCGGTGGTGGCGT+TGG 0.416328 7.2:-38036645 None:intergenic
GGAGACTTAAATTTCCATAT+CGG 0.426564 7.2:+38036750 MS.gene91751:CDS
TCCAGCCAACTGGCATCAAC+AGG 0.444071 7.2:+38036030 MS.gene91751:CDS
CTACTACAAATTCCAACTAT+AGG 0.452160 7.2:+38037201 MS.gene91751:CDS
AAGGGAAATTGATGAGTTTG+TGG 0.457842 7.2:-38036867 None:intergenic
CCGCTACCACCACCTTCAAA+TGG 0.459662 7.2:-38036933 None:intergenic
AGTGAAATAGGACTAAACTA+TGG 0.460875 7.2:+38036702 MS.gene91751:CDS
GCCCTATCTGCCATCGAACC+TGG 0.462544 7.2:-38036330 None:intergenic
TCCAGTCCAATGGGAGGTGT+TGG 0.464011 7.2:+38036729 MS.gene91751:CDS
GCCACCACCGATGAGATTCA+TGG 0.464462 7.2:+38036650 MS.gene91751:CDS
AATCAATCTAGACAATTCTT+GGG 0.469852 7.2:+38037038 MS.gene91751:CDS
GACCAGGTTCGATGGCAGAT+AGG 0.475722 7.2:+38036328 MS.gene91751:CDS
CTTAGAAGTGTCCCGGTTGG+CGG 0.481122 7.2:+38036507 MS.gene91751:CDS
CATATATGGATCCAGCCAAC+TGG 0.482920 7.2:+38036020 MS.gene91751:CDS
ATGGCTCCTTTGCATCATCT+AGG 0.483090 7.2:+38036669 MS.gene91751:CDS
ATAAAGTTATGTCCTATAGT+TGG 0.484745 7.2:-38037213 None:intergenic
ACCAGGTTCGATGGCAGATA+GGG 0.488883 7.2:+38036329 MS.gene91751:CDS
GAAGGTGGTGGTAGCGGTGG+TGG 0.489455 7.2:+38036939 MS.gene91751:CDS
GTCAGAGCTAGCCGGCGACT+TGG 0.489671 7.2:-38036577 None:intergenic
AGGTTCGATGGTTGAGGCTG+TGG 0.490154 7.2:-38036273 None:intergenic
TTCGACAAGCCTTGCAGAAG+TGG 0.490902 7.2:-38036461 None:intergenic
CATTGCTCAAAATTGCCAAC+AGG 0.493075 7.2:-38036837 None:intergenic
AGAAGTGTCCCGGTTGGCGG+TGG 0.494695 7.2:+38036510 MS.gene91751:CDS
CCATTTGAAGGTGGTGGTAG+CGG 0.496097 7.2:+38036933 MS.gene91751:CDS
AGAGCTAGCCGGCGACTTGG+AGG 0.502693 7.2:-38036574 None:intergenic
TTAGGTGGAGGCGTTGGTAA+CGG 0.512562 7.2:+38036780 MS.gene91751:CDS
AGTTTAGTCCTATTTCACTT+AGG 0.513240 7.2:-38036698 None:intergenic
AACGGTGGTGTCAACGGTGG+TGG 0.514797 7.2:+38036798 MS.gene91751:CDS
GATGGTTGAGGCTGTGGTGG+TGG 0.518267 7.2:-38036267 None:intergenic
GGATTGTTGTATCCATTTGA+AGG 0.522126 7.2:+38036921 MS.gene91751:CDS
TGGAATGCTTCTGCTGGTGG+TGG 0.522977 7.2:+38037125 MS.gene91751:CDS
TCCAACACCTCCCATTGGAC+TGG 0.527498 7.2:-38036730 None:intergenic
TGCGATGGTGTCAGGTTCGA+TGG 0.530120 7.2:-38036285 None:intergenic
AGCTTCTAAAGTTGACAAGA+AGG 0.532028 7.2:-38036886 None:intergenic
GTAGCAAAACTTTGTGTTGG+TGG 0.539364 7.2:-38036409 None:intergenic
GTAGTAGCAAAACTTTGTGT+TGG 0.542073 7.2:-38036412 None:intergenic
TTCGGCAACCACCGCCAACC+GGG 0.543263 7.2:-38036518 None:intergenic
AATGATCAATCCCATGCATA+TGG 0.543891 7.2:+38036966 MS.gene91751:CDS
AGCTCTTTAGGTGGAGGCGT+TGG 0.544707 7.2:+38036774 MS.gene91751:CDS
CTGACACCATCGCAACCTCA+TGG 0.545229 7.2:+38036294 MS.gene91751:CDS
CTCGATCAGACCAGGTTCGA+TGG 0.546965 7.2:+38036320 MS.gene91751:CDS
GCCATGAATCTCATCGGTGG+TGG 0.547604 7.2:-38036651 None:intergenic
CATGGAGGCTCGATCAGACC+AGG 0.549550 7.2:+38036312 MS.gene91751:CDS
TTGTATCCATTTGAAGGTGG+TGG 0.552400 7.2:+38036927 MS.gene91751:CDS
TGTCGAAGGTATTGGACAAA+GGG 0.552845 7.2:+38036477 MS.gene91751:CDS
GCAGCCACGCCACTTCTGCA+AGG 0.554356 7.2:+38036452 MS.gene91751:CDS
GCCCTTAGAAGTGTCCCGGT+TGG 0.556141 7.2:+38036504 MS.gene91751:CDS
ATCGGAAGCTCTTTAGGTGG+AGG 0.559518 7.2:+38036768 MS.gene91751:CDS
ATTTACCTGTTGATGCCAGT+TGG 0.559637 7.2:-38036035 None:intergenic
GTTGGTAACGGTGGTGTCAA+CGG 0.562708 7.2:+38036792 MS.gene91751:CDS
CAATATTGGAATGCTTCTGC+TGG 0.566637 7.2:+38037119 MS.gene91751:CDS
TGGTGCCCTTAGAAGTGTCC+CGG 0.567606 7.2:+38036500 MS.gene91751:CDS
TTCGATGGTTGAGGCTGTGG+TGG 0.570012 7.2:-38036270 None:intergenic
GTTGGGGAACTGAGTACCGC+AGG 0.570283 7.2:-38036627 None:intergenic
CATATCGGAAGCTCTTTAGG+TGG 0.571600 7.2:+38036765 MS.gene91751:CDS
AAGTCTCCAACACCTCCCAT+TGG 0.574092 7.2:-38036735 None:intergenic
TGTGGTGGTGGAATAAGTAG+AGG 0.574363 7.2:-38036255 None:intergenic
GATGGCAGATAGGGCAAGGA+TGG 0.575021 7.2:+38036338 MS.gene91751:CDS
TAGACACACCACCATATGCA+TGG 0.575174 7.2:-38036977 None:intergenic
TCTCATCGGTGGTGGCGTTG+GGG 0.576658 7.2:-38036643 None:intergenic
GCCAACCGGGACACTTCTAA+GGG 0.580076 7.2:-38036505 None:intergenic
GTTTGGCGGTCAGAGCTAGC+CGG 0.580677 7.2:-38036585 None:intergenic
TTAGAAGCTTCTTCTTCACA+TGG 0.581519 7.2:+38036900 MS.gene91751:CDS
TATTGGAATGCTTCTGCTGG+TGG 0.586587 7.2:+38037122 MS.gene91751:CDS
GTGGTTGCCGAAGAAACAAA+AGG 0.588845 7.2:+38036529 MS.gene91751:CDS
GCTTCTAAAGTTGACAAGAA+GGG 0.589264 7.2:-38036885 None:intergenic
TGTTTGTAGAGCTAGTTTGG+CGG 0.589509 7.2:-38036599 None:intergenic
TAACAACACCTCCAAGTCGC+CGG 0.589920 7.2:+38036566 MS.gene91751:CDS
CAAGCCTTGCAGAAGTGGCG+TGG 0.593138 7.2:-38036456 None:intergenic
GCAGCAACAAAATCATCAAG+TGG 0.596192 7.2:+38036212 MS.gene91751:intron
TTGTCGAAGGTATTGGACAA+AGG 0.596657 7.2:+38036476 MS.gene91751:CDS
TTTGAAGGTGGTGGTAGCGG+TGG 0.603652 7.2:+38036936 MS.gene91751:CDS
GAGCCTCCATGAGGTTGCGA+TGG 0.604696 7.2:-38036300 None:intergenic
AGGAGTGTTGACACTAGTGT+TGG 0.605835 7.2:-38036235 None:intergenic
GGTGTCAGGTTCGATGGTTG+AGG 0.608734 7.2:-38036279 None:intergenic
TTGGCTGGATCCATATATGG+TGG 0.609224 7.2:-38036016 None:intergenic
GTTCGATGGCAGATAGGGCA+AGG 0.614474 7.2:+38036334 MS.gene91751:CDS
AGACACACCACCATATGCAT+GGG 0.619832 7.2:-38036976 None:intergenic
TTGTTGTATCCATTTGAAGG+TGG 0.620036 7.2:+38036924 MS.gene91751:CDS
TGATCACCTAGATGATGCAA+AGG 0.622493 7.2:-38036675 None:intergenic
CGAAGGTATTGGACAAAGGG+TGG 0.625409 7.2:+38036480 MS.gene91751:CDS
TGGCTGGATCCATATATGGT+GGG 0.628650 7.2:-38036015 None:intergenic
GGTGGAGGCGTTGGTAACGG+TGG 0.630519 7.2:+38036783 MS.gene91751:CDS
AAAGGAGCCATGAATCTCAT+CGG 0.638198 7.2:-38036657 None:intergenic
ACTTCTGCAAGGCTTGTCGA+AGG 0.638852 7.2:+38036463 MS.gene91751:CDS
GCTGTAGAAAGATCTGTCCA+AGG 0.641214 7.2:-38037161 None:intergenic
GTGGTGCTACTAATTCACCT+TGG 0.642878 7.2:+38037144 MS.gene91751:CDS
CTCTACAAACAACTCTCCTG+CGG 0.682618 7.2:+38036611 MS.gene91751:CDS
GTGTTGGTGGAATCACACCT+TGG 0.687306 7.2:-38036396 None:intergenic
GGTCTGATCGAGCCTCCATG+AGG 0.689453 7.2:-38036309 None:intergenic
GGAGCCATGAATCTCATCGG+TGG 0.692277 7.2:-38036654 None:intergenic
GATCAATCCCATGCATATGG+TGG 0.692633 7.2:+38036969 MS.gene91751:CDS
GGTAACGGTGGTGTCAACGG+TGG 0.699310 7.2:+38036795 MS.gene91751:CDS
TGGGAGAGAAGTATAAACCA+TGG 0.714065 7.2:-38035996 None:intergenic
ACACCATCGCAACCTCATGG+AGG 0.720835 7.2:+38036297 MS.gene91751:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGGAAATAAAAATTAA+TGG - chr7.2:38036191-38036210 None:intergenic 10.0%
!! GATACATAAAATCAAATATT+TGG - chr7.2:38036164-38036183 None:intergenic 15.0%
!! AAATAATTCTAGTGTGAAAA+TGG + chr7.2:38037010-38037029 MS.gene91751:CDS 20.0%
! AATCAATCTAGACAATTCTT+GGG + chr7.2:38037038-38037057 MS.gene91751:CDS 25.0%
! ATCCTAATAGTGAACAATAT+TGG + chr7.2:38037105-38037124 MS.gene91751:CDS 25.0%
! ATTTGGTATATTCAAGAGAA+GGG - chr7.2:38036147-38036166 None:intergenic 25.0%
! TATTTGGTATATTCAAGAGA+AGG - chr7.2:38036148-38036167 None:intergenic 25.0%
! TTCCAATATTGTTCACTATT+AGG - chr7.2:38037110-38037129 None:intergenic 25.0%
!!! ATTTAGACCTTTTGTTTCTT+CGG - chr7.2:38036539-38036558 None:intergenic 25.0%
AGTGAAATAGGACTAAACTA+TGG + chr7.2:38036702-38036721 MS.gene91751:CDS 30.0%
AGTTTAGTCCTATTTCACTT+AGG - chr7.2:38036701-38036720 None:intergenic 30.0%
ATCAACAGGTAAATCAACAA+GGG + chr7.2:38036044-38036063 MS.gene91751:intron 30.0%
CTACTACAAATTCCAACTAT+AGG + chr7.2:38037201-38037220 MS.gene91751:CDS 30.0%
GAATCAATCTAGACAATTCT+TGG + chr7.2:38037037-38037056 MS.gene91751:CDS 30.0%
GGAGACTTAAATTTCCATAT+CGG + chr7.2:38036750-38036769 MS.gene91751:CDS 30.0%
! TGATTTTGTTGCTGCAAAAA+AGG - chr7.2:38036207-38036226 None:intergenic 30.0%
AACCATCACAAAAATGTCCA+AGG + chr7.2:38036379-38036398 MS.gene91751:CDS 35.0%
AAGGGAAATTGATGAGTTTG+TGG - chr7.2:38036870-38036889 None:intergenic 35.0%
AATGATCAATCCCATGCATA+TGG + chr7.2:38036966-38036985 MS.gene91751:CDS 35.0%
AGTTGTTTGTAGAGCTAGTT+TGG - chr7.2:38036605-38036624 None:intergenic 35.0%
CATCAACAGGTAAATCAACA+AGG + chr7.2:38036043-38036062 MS.gene91751:intron 35.0%
GGATTGTTGTATCCATTTGA+AGG + chr7.2:38036921-38036940 MS.gene91751:CDS 35.0%
GTAGTAGCAAAACTTTGTGT+TGG - chr7.2:38036415-38036434 None:intergenic 35.0%
TCAACAAGGGTTCTTCAATT+AGG + chr7.2:38036057-38036076 MS.gene91751:intron 35.0%
TTAGAAGCTTCTTCTTCACA+TGG + chr7.2:38036900-38036919 MS.gene91751:CDS 35.0%
TTGTTGTATCCATTTGAAGG+TGG + chr7.2:38036924-38036943 MS.gene91751:CDS 35.0%
! TATGGTTTTTCCAGTCCAAT+GGG + chr7.2:38036720-38036739 MS.gene91751:CDS 35.0%
! TCTACTTCGATTTTACCTGT+TGG + chr7.2:38036822-38036841 MS.gene91751:CDS 35.0%
! TTTTGTGATGGTTCTTGCAT+AGG - chr7.2:38036372-38036391 None:intergenic 35.0%
!! AGCTTCTAAAGTTGACAAGA+AGG - chr7.2:38036889-38036908 None:intergenic 35.0%
!! GCTTCTAAAGTTGACAAGAA+GGG - chr7.2:38036888-38036907 None:intergenic 35.0%
AAAGGAGCCATGAATCTCAT+CGG - chr7.2:38036660-38036679 None:intergenic 40.0%
ATTTACCTGTTGATGCCAGT+TGG - chr7.2:38036038-38036057 None:intergenic 40.0%
CAATATTGGAATGCTTCTGC+TGG + chr7.2:38037119-38037138 MS.gene91751:CDS 40.0%
CATTGCTCAAAATTGCCAAC+AGG - chr7.2:38036840-38036859 None:intergenic 40.0%
GCAGCAACAAAATCATCAAG+TGG + chr7.2:38036212-38036231 MS.gene91751:intron 40.0%
GGTGATCACCTAAGTGAAAT+AGG + chr7.2:38036690-38036709 MS.gene91751:CDS 40.0%
GTAGCAAAACTTTGTGTTGG+TGG - chr7.2:38036412-38036431 None:intergenic 40.0%
TACTTCTCTCCCACCATATA+TGG + chr7.2:38036006-38036025 MS.gene91751:CDS 40.0%
TGATCACCTAGATGATGCAA+AGG - chr7.2:38036678-38036697 None:intergenic 40.0%
TTCCATATCGGAAGCTCTTT+AGG + chr7.2:38036762-38036781 MS.gene91751:CDS 40.0%
TTGTATCCATTTGAAGGTGG+TGG + chr7.2:38036927-38036946 MS.gene91751:CDS 40.0%
! CACCTTGGACATTTTTGTGA+TGG - chr7.2:38036384-38036403 None:intergenic 40.0%
! CTATGGTTTTTCCAGTCCAA+TGG + chr7.2:38036719-38036738 MS.gene91751:CDS 40.0%
! CTGTTGGCAATTTTGAGCAA+TGG + chr7.2:38036838-38036857 MS.gene91751:CDS 40.0%
! TGTTTGTAGAGCTAGTTTGG+CGG - chr7.2:38036602-38036621 None:intergenic 40.0%
! TTGGCAATTTTGAGCAATGG+AGG + chr7.2:38036841-38036860 MS.gene91751:CDS 40.0%
!! TGTCGAAGGTATTGGACAAA+GGG + chr7.2:38036477-38036496 MS.gene91751:CDS 40.0%
!! TTGTCGAAGGTATTGGACAA+AGG + chr7.2:38036476-38036495 MS.gene91751:CDS 40.0%
AGACACACCACCATATGCAT+GGG - chr7.2:38036979-38036998 None:intergenic 45.0%
ATGGCTCCTTTGCATCATCT+AGG + chr7.2:38036669-38036688 MS.gene91751:CDS 45.0%
CACCTAAAGAGCTTCCGATA+TGG - chr7.2:38036767-38036786 None:intergenic 45.0%
CAGTTGGCTGGATCCATATA+TGG - chr7.2:38036022-38036041 None:intergenic 45.0%
CATATATGGATCCAGCCAAC+TGG + chr7.2:38036020-38036039 MS.gene91751:CDS 45.0%
CATATCGGAAGCTCTTTAGG+TGG + chr7.2:38036765-38036784 MS.gene91751:CDS 45.0%
CTCTACAAACAACTCTCCTG+CGG + chr7.2:38036611-38036630 MS.gene91751:CDS 45.0%
GATCAATCCCATGCATATGG+TGG + chr7.2:38036969-38036988 MS.gene91751:CDS 45.0%
GCTGTAGAAAGATCTGTCCA+AGG - chr7.2:38037164-38037183 None:intergenic 45.0%
GTGGTTGCCGAAGAAACAAA+AGG + chr7.2:38036529-38036548 MS.gene91751:CDS 45.0%
TAGACACACCACCATATGCA+TGG - chr7.2:38036980-38036999 None:intergenic 45.0%
TATTGGAATGCTTCTGCTGG+TGG + chr7.2:38037122-38037141 MS.gene91751:CDS 45.0%
TGGCTGGATCCATATATGGT+GGG - chr7.2:38036018-38036037 None:intergenic 45.0%
TTGGCTGGATCCATATATGG+TGG - chr7.2:38036019-38036038 None:intergenic 45.0%
! TGCATATGGTGGTGTGTCTA+AGG + chr7.2:38036980-38036999 MS.gene91751:CDS 45.0%
!! AGGAGTGTTGACACTAGTGT+TGG - chr7.2:38036238-38036257 None:intergenic 45.0%
!! GTGGTGCTACTAATTCACCT+TGG + chr7.2:38037144-38037163 MS.gene91751:CDS 45.0%
!! TGTGGTGGTGGAATAAGTAG+AGG - chr7.2:38036258-38036277 None:intergenic 45.0%
AAGTCTCCAACACCTCCCAT+TGG - chr7.2:38036738-38036757 None:intergenic 50.0%
ACCAGGTTCGATGGCAGATA+GGG + chr7.2:38036329-38036348 MS.gene91751:CDS 50.0%
ACTTCTGCAAGGCTTGTCGA+AGG + chr7.2:38036463-38036482 MS.gene91751:CDS 50.0%
ATCGGAAGCTCTTTAGGTGG+AGG + chr7.2:38036768-38036787 MS.gene91751:CDS 50.0%
TAACAACACCTCCAAGTCGC+CGG + chr7.2:38036566-38036585 MS.gene91751:CDS 50.0%
TTCGACAAGCCTTGCAGAAG+TGG - chr7.2:38036464-38036483 None:intergenic 50.0%
! CCATTTGAAGGTGGTGGTAG+CGG + chr7.2:38036933-38036952 MS.gene91751:CDS 50.0%
! GCAAGGCTTGTCGAAGGTAT+TGG + chr7.2:38036469-38036488 MS.gene91751:CDS 50.0%
! GGTTTTTCCAGTCCAATGGG+AGG + chr7.2:38036723-38036742 MS.gene91751:CDS 50.0%
! GTGTTGGTGGAATCACACCT+TGG - chr7.2:38036399-38036418 None:intergenic 50.0%
!! CGAAGGTATTGGACAAAGGG+TGG + chr7.2:38036480-38036499 MS.gene91751:CDS 50.0%
!! GTTGGTAACGGTGGTGTCAA+CGG + chr7.2:38036792-38036811 MS.gene91751:CDS 50.0%
!! TTAGGTGGAGGCGTTGGTAA+CGG + chr7.2:38036780-38036799 MS.gene91751:CDS 50.0%
ACACCATCGCAACCTCATGG+AGG + chr7.2:38036297-38036316 MS.gene91751:CDS 55.0%
ACCTGTTGATGCCAGTTGGC+TGG - chr7.2:38036034-38036053 None:intergenic 55.0%
AGGTTCGATGGTTGAGGCTG+TGG - chr7.2:38036276-38036295 None:intergenic 55.0%
CATGAGGTTGCGATGGTGTC+AGG - chr7.2:38036296-38036315 None:intergenic 55.0%
CCGCTACCACCACCTTCAAA+TGG - chr7.2:38036936-38036955 None:intergenic 55.0%
CTCGATCAGACCAGGTTCGA+TGG + chr7.2:38036320-38036339 MS.gene91751:CDS 55.0%
CTGACACCATCGCAACCTCA+TGG + chr7.2:38036294-38036313 MS.gene91751:CDS 55.0%
GACCAGGTTCGATGGCAGAT+AGG + chr7.2:38036328-38036347 MS.gene91751:CDS 55.0%
GATGGCAGATAGGGCAAGGA+TGG + chr7.2:38036338-38036357 MS.gene91751:CDS 55.0%
GCCAACCGGGACACTTCTAA+GGG - chr7.2:38036508-38036527 None:intergenic 55.0%
GCCACCACCGATGAGATTCA+TGG + chr7.2:38036650-38036669 MS.gene91751:CDS 55.0%
GCCATGAATCTCATCGGTGG+TGG - chr7.2:38036654-38036673 None:intergenic 55.0%
GGAGCCATGAATCTCATCGG+TGG - chr7.2:38036657-38036676 None:intergenic 55.0%
GGTGTCAGGTTCGATGGTTG+AGG - chr7.2:38036282-38036301 None:intergenic 55.0%
GTTCGATGGCAGATAGGGCA+AGG + chr7.2:38036334-38036353 MS.gene91751:CDS 55.0%
TCCAACACCTCCCATTGGAC+TGG - chr7.2:38036733-38036752 None:intergenic 55.0%
TCCAGCCAACTGGCATCAAC+AGG + chr7.2:38036030-38036049 MS.gene91751:CDS 55.0%
TGGAATGCTTCTGCTGGTGG+TGG + chr7.2:38037125-38037144 MS.gene91751:CDS 55.0%
TTCGATGGTTGAGGCTGTGG+TGG - chr7.2:38036273-38036292 None:intergenic 55.0%
! AATCTCATCGGTGGTGGCGT+TGG - chr7.2:38036648-38036667 None:intergenic 55.0%
! AGCTCTTTAGGTGGAGGCGT+TGG + chr7.2:38036774-38036793 MS.gene91751:CDS 55.0%
! ATCTCATCGGTGGTGGCGTT+GGG - chr7.2:38036647-38036666 None:intergenic 55.0%
! TCCAGTCCAATGGGAGGTGT+TGG + chr7.2:38036729-38036748 MS.gene91751:CDS 55.0%
! TGCGATGGTGTCAGGTTCGA+TGG - chr7.2:38036288-38036307 None:intergenic 55.0%
!! CTTAGAAGTGTCCCGGTTGG+CGG + chr7.2:38036507-38036526 MS.gene91751:CDS 55.0%
!! TGGTGCCCTTAGAAGTGTCC+CGG + chr7.2:38036500-38036519 MS.gene91751:CDS 55.0%
!! TTTGAAGGTGGTGGTAGCGG+TGG + chr7.2:38036936-38036955 MS.gene91751:CDS 55.0%
CAAGCCTTGCAGAAGTGGCG+TGG - chr7.2:38036459-38036478 None:intergenic 60.0%
CATGGAGGCTCGATCAGACC+AGG + chr7.2:38036312-38036331 MS.gene91751:CDS 60.0%
CGCCAACCGGGACACTTCTA+AGG - chr7.2:38036509-38036528 None:intergenic 60.0%
GAGCCTCCATGAGGTTGCGA+TGG - chr7.2:38036303-38036322 None:intergenic 60.0%
GATGGTTGAGGCTGTGGTGG+TGG - chr7.2:38036270-38036289 None:intergenic 60.0%
GCCCTATCTGCCATCGAACC+TGG - chr7.2:38036333-38036352 None:intergenic 60.0%
GGTCTGATCGAGCCTCCATG+AGG - chr7.2:38036312-38036331 None:intergenic 60.0%
GTTTGGCGGTCAGAGCTAGC+CGG - chr7.2:38036588-38036607 None:intergenic 60.0%
! AACGGTGGTGTCAACGGTGG+TGG + chr7.2:38036798-38036817 MS.gene91751:CDS 60.0%
! GGTAACGGTGGTGTCAACGG+TGG + chr7.2:38036795-38036814 MS.gene91751:CDS 60.0%
! GTTGGGGAACTGAGTACCGC+AGG - chr7.2:38036630-38036649 None:intergenic 60.0%
! TCTCATCGGTGGTGGCGTTG+GGG - chr7.2:38036646-38036665 None:intergenic 60.0%
!! GCCCTTAGAAGTGTCCCGGT+TGG + chr7.2:38036504-38036523 MS.gene91751:CDS 60.0%
CTTCGGCAACCACCGCCAAC+CGG - chr7.2:38036522-38036541 None:intergenic 65.0%
GCAGCCACGCCACTTCTGCA+AGG + chr7.2:38036452-38036471 MS.gene91751:CDS 65.0%
GTCAGAGCTAGCCGGCGACT+TGG - chr7.2:38036580-38036599 None:intergenic 65.0%
TTCGGCAACCACCGCCAACC+GGG - chr7.2:38036521-38036540 None:intergenic 65.0%
! AGAGCTAGCCGGCGACTTGG+AGG - chr7.2:38036577-38036596 None:intergenic 65.0%
!! AGAAGTGTCCCGGTTGGCGG+TGG + chr7.2:38036510-38036529 MS.gene91751:CDS 65.0%
!! GAAGGTGGTGGTAGCGGTGG+TGG + chr7.2:38036939-38036958 MS.gene91751:CDS 65.0%
!! GGTGGAGGCGTTGGTAACGG+TGG + chr7.2:38036783-38036802 MS.gene91751:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 38035998 38037229 38035998 ID=MS.gene91751
chr7.2 mRNA 38035998 38037229 38035998 ID=MS.gene91751.t1;Parent=MS.gene91751
chr7.2 exon 38035998 38036051 38035998 ID=MS.gene91751.t1.exon1;Parent=MS.gene91751.t1
chr7.2 CDS 38035998 38036051 38035998 ID=cds.MS.gene91751.t1;Parent=MS.gene91751.t1
chr7.2 exon 38036216 38037229 38036216 ID=MS.gene91751.t1.exon2;Parent=MS.gene91751.t1
chr7.2 CDS 38036216 38037229 38036216 ID=cds.MS.gene91751.t1;Parent=MS.gene91751.t1
Gene Sequence

>MS.gene91751

ATGGTTTATACTTCTCTCCCACCATATATGGATCCAGCCAACTGGCATCAACAGGTAAATCAACAAGGGTTCTTCAATTAGGTTTCAAAAAGAAAGAAAAAAAATAAACTCAAAAGATAAATATTCGAGCTTTACTTTTGTTTATACCCTTCTCTTGAATATACCAAATATTTGATTTTATGTATCTTTACCATTAATTTTTATTTCCTTTTTTGCAGCAACAAAATCATCAAGTGGCCAACACTAGTGTCAACACTCCTCTACTTATTCCACCACCACAGCCTCAACCATCGAACCTGACACCATCGCAACCTCATGGAGGCTCGATCAGACCAGGTTCGATGGCAGATAGGGCAAGGATGGCAAACATACCTATGCAAGAACCATCACAAAAATGTCCAAGGTGTGATTCCACCAACACAAAGTTTTGCTACTACAACAACTATAGTCTCTCGCAGCCACGCCACTTCTGCAAGGCTTGTCGAAGGTATTGGACAAAGGGTGGTGCCCTTAGAAGTGTCCCGGTTGGCGGTGGTTGCCGAAGAAACAAAAGGTCTAAATCAAGCAGTAACAACACCTCCAAGTCGCCGGCTAGCTCTGACCGCCAAACTAGCTCTACAAACAACTCTCCTGCGGTACTCAGTTCCCCAACGCCACCACCGATGAGATTCATGGCTCCTTTGCATCATCTAGGTGATCACCTAAGTGAAATAGGACTAAACTATGGTTTTTCCAGTCCAATGGGAGGTGTTGGAGACTTAAATTTCCATATCGGAAGCTCTTTAGGTGGAGGCGTTGGTAACGGTGGTGTCAACGGTGGTGGTTCTACTTCGATTTTACCTGTTGGCAATTTTGAGCAATGGAGGATGCCACAAACTCATCAATTTCCCTTCTTGTCAACTTTAGAAGCTTCTTCTTCACATGGATTGTTGTATCCATTTGAAGGTGGTGGTAGCGGTGGTGGTGCTAATGATCAATCCCATGCATATGGTGGTGTGTCTAAGGTATTATCAAATAATTCTAGTGTGAAAATGGAAGAGAATCAATCTAGACAATTCTTGGGAATGATCAACAAAAACAACATCAATAATAATAATAATAATAATAATCCTAATAGTGAACAATATTGGAATGCTTCTGCTGGTGGTGGTGCTACTAATTCACCTTGGACAGATCTTTCTACAGCTTATAACACTTCTTCAGCTACTACAAATTCCAACTATAGGACATAA
Protein sequence

>MS.gene91751.t1

MVYTSLPPYMDPANWHQQQQNHQVANTSVNTPLLIPPPQPQPSNLTPSQPHGGSIRPGSMADRARMANIPMQEPSQKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTKGGALRSVPVGGGCRRNKRSKSSSNNTSKSPASSDRQTSSTNNSPAVLSSPTPPPMRFMAPLHHLGDHLSEIGLNYGFSSPMGGVGDLNFHIGSSLGGGVGNGGVNGGGSTSILPVGNFEQWRMPQTHQFPFLSTLEASSSHGLLYPFEGGGSGGGANDQSHAYGGVSKVLSNNSSVKMEENQSRQFLGMINKNNINNNNNNNNPNSEQYWNASAGGGATNSPWTDLSTAYNTSSATTNSNYRT