AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91767

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91767.t1 MTR_2g041620 97.561 246 6 0 1 246 53 298 0.0 501
MS.gene91767.t1 MTR_2g041620 97.561 246 6 0 1 246 41 286 0.0 500
MS.gene91767.t1 MTR_2g041620 96.930 228 7 0 1 228 53 280 8.68e-168 464
MS.gene91767.t1 MTR_2g041620 97.512 201 5 0 1 201 53 253 1.09e-146 410
MS.gene91767.t1 MTR_4g129490 27.660 188 111 5 54 225 58 236 1.43e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91767.t1 AT2G06025 65.021 243 81 2 2 244 47 285 6.27e-114 328
MS.gene91767.t1 AT2G06025 65.021 243 81 2 2 244 47 285 6.27e-114 328
MS.gene91767.t1 AT2G06025 65.021 243 81 2 2 244 47 285 6.27e-114 328
MS.gene91767.t1 AT2G06025 67.000 200 62 2 2 201 47 242 1.19e-95 280
MS.gene91767.t1 AT2G06025 67.000 200 62 2 2 201 47 242 1.19e-95 280
MS.gene91767.t1 AT2G06025 67.000 200 62 2 2 201 47 242 1.19e-95 280
MS.gene91767.t1 AT2G06025 65.060 166 54 2 2 167 47 208 5.84e-75 226
MS.gene91767.t1 AT4G28030 30.583 206 101 7 50 231 58 245 2.84e-13 68.2

Find 50 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCTTCTTCCACCACTTT+AGG 0.251194 2.1:+49666106 None:intergenic
TCCTTGTCGACGAGCCAATT+TGG 0.274791 2.1:+49663986 None:intergenic
AAATTTATGTGTTGCCAAAT+TGG 0.283413 2.1:-49664000 MS.gene91767:CDS
AGAGAAAATAGATTTGAGTT+TGG 0.303539 2.1:-49666028 MS.gene91767:CDS
AAGCGGTGCAAGGTGCAAAA+TGG 0.311231 2.1:-49664487 MS.gene91767:CDS
GAGAAAATAGATTTGAGTTT+GGG 0.321359 2.1:-49666027 MS.gene91767:CDS
TCCACCACTTTAGGAACAAT+TGG 0.325988 2.1:+49666115 None:intergenic
CAAAAGGAAATTTGCTGATC+AGG 0.341147 2.1:-49664617 MS.gene91767:intron
CTGTGCTTGATGAAGAGTTT+TGG 0.345709 2.1:-49665985 MS.gene91767:CDS
CTGTTTATGCTGCAACAAAA+AGG 0.359050 2.1:+49664053 None:intergenic
TTACCTCAAAGCCCATCTTT+TGG 0.386865 2.1:+49663791 None:intergenic
TGCAGACAGCAGCCTGGCTA+AGG 0.397087 2.1:-49665205 MS.gene91767:intron
TCTCTCCTTGCAGCAAATAT+CGG 0.397446 2.1:+49664190 None:intergenic
GGCTAAGGGCAGAAAGTCAT+TGG 0.397544 2.1:-49665190 MS.gene91767:CDS
AGCGGTGCAAGGTGCAAAAT+GGG 0.411100 2.1:-49664486 MS.gene91767:CDS
TCATTTAGCAGGTGTGAGTC+AGG 0.439184 2.1:-49663860 MS.gene91767:intron
ATGACTTTCTGCCCTTAGCC+AGG 0.443627 2.1:+49665193 None:intergenic
AGAACACCACCAAGTAGATA+TGG 0.454568 2.1:-49664032 MS.gene91767:CDS
GTTGAAAATGCAAAATCTAA+TGG 0.457985 2.1:-49663936 MS.gene91767:intron
GAAGAAGGTTTGAGCTCAAA+TGG 0.457998 2.1:-49666094 MS.gene91767:CDS
AGTTTGGGCAATTTGTAGCT+AGG 0.464831 2.1:-49666012 MS.gene91767:CDS
GTACCAAAAGATGGGCTTTG+AGG 0.468548 2.1:-49663794 MS.gene91767:intron
CCACCACTTTAGGAACAATT+GGG 0.469375 2.1:+49666116 None:intergenic
GTTCCTAAAGTGGTGGAAGA+AGG 0.470682 2.1:-49666109 MS.gene91767:CDS
ATTTGATCGGTTGCAGCCAT+CGG 0.477407 2.1:-49666065 MS.gene91767:CDS
ACAGTTATTGTACCAAAAGA+TGG 0.478573 2.1:-49663803 MS.gene91767:CDS
TCATGTTTATCAGGTGAGAA+AGG 0.487782 2.1:-49664274 MS.gene91767:intron
CGTAGCAAGTATGTTTCCTC+TGG 0.493901 2.1:+49663613 None:intergenic
AAGCCCAATTGTTCCTAAAG+TGG 0.498436 2.1:-49666119 MS.gene91767:CDS
GATATATTGATATCTACAAA+AGG 0.499748 2.1:-49664633 MS.gene91767:CDS
CTAATCAACTCTTGTTCCGA+TGG 0.513135 2.1:+49666049 None:intergenic
TGCATGTGGACAGAAATAAT+AGG 0.513457 2.1:-49663831 MS.gene91767:CDS
GCCAAATTGGCTCGTCGACA+AGG 0.522479 2.1:-49663987 MS.gene91767:CDS
GTGGACAGAAATAATAGGCC+TGG 0.530546 2.1:-49663826 MS.gene91767:CDS
GCAATGTAACCATATCTACT+TGG 0.536879 2.1:+49664023 None:intergenic
CAAATGGTCTTCGATTTGAT+CGG 0.545639 2.1:-49666078 MS.gene91767:CDS
GTTTGGGCAATTTGTAGCTA+GGG 0.550313 2.1:-49666011 MS.gene91767:CDS
CAGTTATTGTACCAAAAGAT+GGG 0.552741 2.1:-49663802 MS.gene91767:CDS
GCTAAGGGCAGAAAGTCATT+GGG 0.553474 2.1:-49665189 MS.gene91767:CDS
CCCAATTGTTCCTAAAGTGG+TGG 0.571687 2.1:-49666116 MS.gene91767:CDS
TGGTTGAAACTGCAAACTCT+CGG 0.577388 2.1:-49663642 MS.gene91767:CDS
GCAGACAGCAGCCTGGCTAA+GGG 0.579446 2.1:-49665204 MS.gene91767:intron
GGGAGAATCAAACATATGAA+AGG 0.580964 2.1:-49665169 MS.gene91767:intron
AATATCCGATATTTGCTGCA+AGG 0.586800 2.1:-49664195 MS.gene91767:CDS
CAGCTGCGCATGCATTATCG+CGG 0.671835 2.1:-49664461 MS.gene91767:intron
AAACTCTCGGTTGTTACCAG+AGG 0.674396 2.1:-49663629 MS.gene91767:CDS
ATGTAACCATATCTACTTGG+TGG 0.675557 2.1:+49664026 None:intergenic
GAGTCAGGTATATGTGCATG+TGG 0.676318 2.1:-49663845 MS.gene91767:CDS
GCGGTGCAAGGTGCAAAATG+GGG 0.677118 2.1:-49664485 MS.gene91767:CDS
TATTGTTTAGGAATTTAATG+CGG 0.686710 2.1:-49664515 MS.gene91767:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAACAAATTCAAA+CGG + chr2.1:49663820-49663839 None:intergenic 10.0%
!! AAAAACATTTAATGAAATGA+AGG + chr2.1:49664699-49664718 None:intergenic 15.0%
!! AAAAATAAACAAATTCAAAC+GGG + chr2.1:49663819-49663838 None:intergenic 15.0%
!! AAAACATTTAATGAAATGAA+GGG + chr2.1:49664698-49664717 None:intergenic 15.0%
!! ATATTTAACCCTAAAATAAT+TGG + chr2.1:49664808-49664827 None:intergenic 15.0%
!! TATTTAACCCTAAAATAATT+GGG + chr2.1:49664807-49664826 None:intergenic 15.0%
!!! AAATATGTTTTTCATACATA+AGG - chr2.1:49664822-49664841 MS.gene91767:intron 15.0%
!!! TTGTTTTTTTTTTTGACAAA+AGG - chr2.1:49665985-49666004 MS.gene91767:CDS 15.0%
!!! TTTTCTAAATAGTAGAATAT+AGG - chr2.1:49664986-49665005 MS.gene91767:intron 15.0%
!! ACAAATGAATGATAAATGAT+TGG + chr2.1:49664453-49664472 None:intergenic 20.0%
!! ACAATTTCATGAACTAAAAT+GGG - chr2.1:49664293-49664312 MS.gene91767:intron 20.0%
!! ATAAATCAGTCAATTCAAAT+GGG - chr2.1:49664010-49664029 MS.gene91767:CDS 20.0%
!! ATTAACAATAGGTAAGAATT+TGG - chr2.1:49665058-49665077 MS.gene91767:intron 20.0%
!! CAACAATCTATAACAAAAAT+TGG + chr2.1:49666039-49666058 None:intergenic 20.0%
!! CATTAAATTCCTAAACAATA+GGG + chr2.1:49665233-49665252 None:intergenic 20.0%
!! GATATATTGATATCTACAAA+AGG - chr2.1:49665115-49665134 MS.gene91767:intron 20.0%
!! TACAATTTCATGAACTAAAA+TGG - chr2.1:49664292-49664311 MS.gene91767:intron 20.0%
!! TATTGTTTAGGAATTTAATG+CGG - chr2.1:49665233-49665252 MS.gene91767:intron 20.0%
!! TGATCTAGTTAAAAAAATTC+AGG - chr2.1:49665333-49665352 MS.gene91767:intron 20.0%
!! TTAACAATAGGTAAGAATTT+GGG - chr2.1:49665059-49665078 MS.gene91767:intron 20.0%
!! TTCATGAAATTGTAGAAATT+TGG + chr2.1:49664286-49664305 None:intergenic 20.0%
!!! TTTGAAATTGAAAATTCTCA+AGG - chr2.1:49664095-49664114 MS.gene91767:intron 20.0%
! AAATTTATGTGTTGCCAAAT+TGG - chr2.1:49665748-49665767 MS.gene91767:intron 25.0%
! AATAAAGCTTAACCTAATGT+TGG - chr2.1:49664393-49664412 MS.gene91767:intron 25.0%
! AATTTAATGCGGTAAAAAAG+CGG - chr2.1:49665244-49665263 MS.gene91767:intron 25.0%
! ACAAAAGGTAATGTAATTGT+TGG - chr2.1:49666000-49666019 MS.gene91767:CDS 25.0%
! ACATGTGAAATCAATAACTA+TGG - chr2.1:49666061-49666080 MS.gene91767:CDS 25.0%
! CAATTTCATGAACTAAAATG+GGG - chr2.1:49664294-49664313 MS.gene91767:intron 25.0%
! CATAAATCAGTCAATTCAAA+TGG - chr2.1:49664009-49664028 MS.gene91767:CDS 25.0%
! CATACAATTTCATACACTAA+GGG + chr2.1:49664036-49664055 None:intergenic 25.0%
! GCATTAAATTCCTAAACAAT+AGG + chr2.1:49665234-49665253 None:intergenic 25.0%
! GTTGAAAATGCAAAATCTAA+TGG - chr2.1:49665812-49665831 MS.gene91767:intron 25.0%
! TTAACCCTATGAAAAAACAT+TGG + chr2.1:49664631-49664650 None:intergenic 25.0%
!! AGAGAAAATAGATTTGAGTT+TGG - chr2.1:49663720-49663739 MS.gene91767:intron 25.0%
!! ATCATTCATTTGTACTTTTG+TGG - chr2.1:49664460-49664479 MS.gene91767:intron 25.0%
!! GAGAAAATAGATTTGAGTTT+GGG - chr2.1:49663721-49663740 MS.gene91767:intron 25.0%
!! TTTTCTTTGATTCCAACATT+AGG + chr2.1:49664408-49664427 None:intergenic 25.0%
!!! AATCTCCAATGTTTTTTCAT+AGG - chr2.1:49664623-49664642 MS.gene91767:CDS 25.0%
!!! ATCTCCAATGTTTTTTCATA+GGG - chr2.1:49664624-49664643 MS.gene91767:CDS 25.0%
!!! CATTTGACTTGATTAACAAT+AGG - chr2.1:49665047-49665066 MS.gene91767:intron 25.0%
!!! GTTAAGTTGAAGTAACTTTA+TGG - chr2.1:49665845-49665864 MS.gene91767:intron 25.0%
!!! TCGATAATAAAAAGTGTTGT+AGG - chr2.1:49665517-49665536 MS.gene91767:intron 25.0%
AACAAGAATCCCTATTGTTT+AGG - chr2.1:49665221-49665240 MS.gene91767:intron 30.0%
ACAGTTATTGTACCAAAAGA+TGG - chr2.1:49665945-49665964 MS.gene91767:intron 30.0%
ATGAAGGGACTATAATTCAA+CGG + chr2.1:49664683-49664702 None:intergenic 30.0%
CAGTTATTGTACCAAAAGAT+GGG - chr2.1:49665946-49665965 MS.gene91767:intron 30.0%
CCATACAATTTCATACACTA+AGG + chr2.1:49664037-49664056 None:intergenic 30.0%
CCTTAGTGTATGAAATTGTA+TGG - chr2.1:49664034-49664053 MS.gene91767:CDS 30.0%
GATTATAAACCAGATCAAGA+TGG - chr2.1:49664947-49664966 MS.gene91767:intron 30.0%
TGTTTGGATTCATGTTTATC+AGG - chr2.1:49665465-49665484 MS.gene91767:intron 30.0%
! ATTCACTTTGTCTGTCTTTT+AGG - chr2.1:49664317-49664336 MS.gene91767:intron 30.0%
! CAATTTATTGTCTGACTTGT+AGG - chr2.1:49664138-49664157 MS.gene91767:intron 30.0%
! TTTCAACCATCTGAAATTGA+CGG + chr2.1:49666095-49666114 None:intergenic 30.0%
!! ACTTGTAGGATTAGTTGATT+TGG - chr2.1:49664152-49664171 MS.gene91767:intron 30.0%
!! TTGGGTATGTTTTAAACTGT+TGG - chr2.1:49663782-49663801 MS.gene91767:intron 30.0%
AAAATGTGTTCCTTTCATCG+TGG - chr2.1:49664865-49664884 MS.gene91767:intron 35.0%
AAATGATTTACACCCACAAC+CGG + chr2.1:49665032-49665051 None:intergenic 35.0%
AACTTGTGTTGAGCATATTG+TGG - chr2.1:49664907-49664926 MS.gene91767:intron 35.0%
AGTCATCATATCATTTCTGC+AGG - chr2.1:49665658-49665677 MS.gene91767:intron 35.0%
ATGTAACCATATCTACTTGG+TGG + chr2.1:49665725-49665744 None:intergenic 35.0%
CCAGTGTATAGTACTAAGTA+AGG + chr2.1:49665180-49665199 None:intergenic 35.0%
CCTTACTTAGTACTATACAC+TGG - chr2.1:49665177-49665196 MS.gene91767:CDS 35.0%
CTGTTTATGCTGCAACAAAA+AGG + chr2.1:49665698-49665717 None:intergenic 35.0%
CTTGACTATGATTCGACTTA+CGG - chr2.1:49665442-49665461 MS.gene91767:intron 35.0%
GATCACAGAGATAAAATGTG+AGG + chr2.1:49664727-49664746 None:intergenic 35.0%
GATTTGTGGATTCATTTAGC+AGG - chr2.1:49665877-49665896 MS.gene91767:intron 35.0%
GCAATGTAACCATATCTACT+TGG + chr2.1:49665728-49665747 None:intergenic 35.0%
GCTAAATGAATCCACAAATC+AGG + chr2.1:49665877-49665896 None:intergenic 35.0%
GGGAGAATCAAACATATGAA+AGG - chr2.1:49664579-49664598 MS.gene91767:intron 35.0%
TCATGTTTATCAGGTGAGAA+AGG - chr2.1:49665474-49665493 MS.gene91767:intron 35.0%
TGAAGGGACTATAATTCAAC+GGG + chr2.1:49664682-49664701 None:intergenic 35.0%
TGCATGTGGACAGAAATAAT+AGG - chr2.1:49665917-49665936 MS.gene91767:intron 35.0%
! AATATCCGATATTTGCTGCA+AGG - chr2.1:49665553-49665572 MS.gene91767:intron 35.0%
! CAAATGGTCTTCGATTTGAT+CGG - chr2.1:49663670-49663689 MS.gene91767:intron 35.0%
! TGTGCTTGATGAAGAGTTTT+GGG - chr2.1:49663764-49663783 MS.gene91767:intron 35.0%
! TTTTGGTACAATAACTGTCC+AGG + chr2.1:49665943-49665962 None:intergenic 35.0%
!! AGTGGGTCCCAATTATTTTA+GGG - chr2.1:49664797-49664816 MS.gene91767:intron 35.0%
!! CAAAAGGAAATTTGCTGATC+AGG - chr2.1:49665131-49665150 MS.gene91767:intron 35.0%
!! TAGTGGGTCCCAATTATTTT+AGG - chr2.1:49664796-49664815 MS.gene91767:intron 35.0%
AAACCTTCTTCCACCACTTT+AGG + chr2.1:49663645-49663664 None:intergenic 40.0%
AACACAACAACCACGATGAA+AGG + chr2.1:49664878-49664897 None:intergenic 40.0%
AAGCCCAATTGTTCCTAAAG+TGG - chr2.1:49663629-49663648 MS.gene91767:CDS 40.0%
AATGCTGATATGGCAGTTAG+TGG - chr2.1:49664779-49664798 MS.gene91767:intron 40.0%
AGAACACCACCAAGTAGATA+TGG - chr2.1:49665716-49665735 MS.gene91767:intron 40.0%
AGTAATCTGAATGACCCTAC+CGG - chr2.1:49665010-49665029 MS.gene91767:intron 40.0%
AGTTTGGGCAATTTGTAGCT+AGG - chr2.1:49663736-49663755 MS.gene91767:intron 40.0%
ATGATTCGACTTACGGTGTT+TGG - chr2.1:49665449-49665468 MS.gene91767:intron 40.0%
ATGCTGATATGGCAGTTAGT+GGG - chr2.1:49664780-49664799 MS.gene91767:intron 40.0%
ATTTCGCCGTCAATTTCAGA+TGG - chr2.1:49666086-49666105 MS.gene91767:CDS 40.0%
CCCTGCTGTTAATTCTCTAA+CGG - chr2.1:49664756-49664775 MS.gene91767:intron 40.0%
CCGTTAGAGAATTAACAGCA+GGG + chr2.1:49664759-49664778 None:intergenic 40.0%
CGTAAGTCGAATCATAGTCA+AGG + chr2.1:49665444-49665463 None:intergenic 40.0%
CTAATCAACTCTTGTTCCGA+TGG + chr2.1:49663702-49663721 None:intergenic 40.0%
GAAGAAGGTTTGAGCTCAAA+TGG - chr2.1:49663654-49663673 MS.gene91767:intron 40.0%
GAAGGGACTATAATTCAACG+GGG + chr2.1:49664681-49664700 None:intergenic 40.0%
GTTTGGGCAATTTGTAGCTA+GGG - chr2.1:49663737-49663756 MS.gene91767:intron 40.0%
TACTGTTCTGTCTAGACTGA+TGG - chr2.1:49665614-49665633 MS.gene91767:intron 40.0%
TCCGTTAGAGAATTAACAGC+AGG + chr2.1:49664760-49664779 None:intergenic 40.0%
TCTCTAACGGAATGCTGATA+TGG - chr2.1:49664769-49664788 MS.gene91767:intron 40.0%
TCTCTCCTTGCAGCAAATAT+CGG + chr2.1:49665561-49665580 None:intergenic 40.0%
TGACATCATCCATCTTGATC+TGG + chr2.1:49664959-49664978 None:intergenic 40.0%
TGGTTGAAACTGCAAACTCT+CGG - chr2.1:49666106-49666125 MS.gene91767:CDS 40.0%
TTTGCTGATCAGGTAGGAAT+CGG - chr2.1:49665141-49665160 MS.gene91767:intron 40.0%
! CCACCACTTTAGGAACAATT+GGG + chr2.1:49663635-49663654 None:intergenic 40.0%
! CTGTGCTTGATGAAGAGTTT+TGG - chr2.1:49663763-49663782 MS.gene91767:intron 40.0%
! TATGGTTTACGCCTGATTTG+TGG - chr2.1:49665863-49665882 MS.gene91767:intron 40.0%
! TCCACCACTTTAGGAACAAT+TGG + chr2.1:49663636-49663655 None:intergenic 40.0%
! TTACCTCAAAGCCCATCTTT+TGG + chr2.1:49665960-49665979 None:intergenic 40.0%
!! AGGAAATTTGCTGATCAGGT+AGG - chr2.1:49665135-49665154 MS.gene91767:intron 40.0%
AAACTCTCGGTTGTTACCAG+AGG - chr2.1:49666119-49666138 MS.gene91767:CDS 45.0%
ATTTACACCCACAACCGGTA+GGG + chr2.1:49665027-49665046 None:intergenic 45.0%
ATTTGATCGGTTGCAGCCAT+CGG - chr2.1:49663683-49663702 MS.gene91767:intron 45.0%
CCCAATTGTTCCTAAAGTGG+TGG - chr2.1:49663632-49663651 MS.gene91767:CDS 45.0%
CGTAGCAAGTATGTTTCCTC+TGG + chr2.1:49666138-49666157 None:intergenic 45.0%
GAAAGAATGAGTAGTACCCC+AGG + chr2.1:49665589-49665608 None:intergenic 45.0%
GAGTCAGGTATATGTGCATG+TGG - chr2.1:49665903-49665922 MS.gene91767:intron 45.0%
GCTAAGGGCAGAAAGTCATT+GGG - chr2.1:49664559-49664578 MS.gene91767:intron 45.0%
GTGGACAGAAATAATAGGCC+TGG - chr2.1:49665922-49665941 MS.gene91767:intron 45.0%
TCATTTAGCAGGTGTGAGTC+AGG - chr2.1:49665888-49665907 MS.gene91767:intron 45.0%
! GTACCAAAAGATGGGCTTTG+AGG - chr2.1:49665954-49665973 MS.gene91767:intron 45.0%
! GTTCCTAAAGTGGTGGAAGA+AGG - chr2.1:49663639-49663658 MS.gene91767:CDS 45.0%
! TGCAAGGAGAGACTTTTCCT+GGG - chr2.1:49665569-49665588 MS.gene91767:intron 45.0%
AAGCGGTGCAAGGTGCAAAA+TGG - chr2.1:49665261-49665280 MS.gene91767:intron 50.0%
AGCGGTGCAAGGTGCAAAAT+GGG - chr2.1:49665262-49665281 MS.gene91767:intron 50.0%
ATGACTTTCTGCCCTTAGCC+AGG + chr2.1:49664558-49664577 None:intergenic 50.0%
GATTTACACCCACAACCGGT+AGG + chr2.1:49665028-49665047 None:intergenic 50.0%
GGCTAAGGGCAGAAAGTCAT+TGG - chr2.1:49664558-49664577 MS.gene91767:intron 50.0%
TCAACGGGGCGCAAAATGTA+AGG + chr2.1:49664667-49664686 None:intergenic 50.0%
TCCTTGTCGACGAGCCAATT+TGG + chr2.1:49665765-49665784 None:intergenic 50.0%
TGCGGTAAAAAAGCGGTGCA+AGG - chr2.1:49665251-49665270 MS.gene91767:intron 50.0%
! CTGCAAGGAGAGACTTTTCC+TGG - chr2.1:49665568-49665587 MS.gene91767:intron 50.0%
! GCAAGGAGAGACTTTTCCTG+GGG - chr2.1:49665570-49665589 MS.gene91767:intron 50.0%
! TGAATGACCCTACCGGTTGT+GGG - chr2.1:49665017-49665036 MS.gene91767:intron 50.0%
! TTCTTTTGCAGACAGCAGCC+TGG - chr2.1:49664537-49664556 MS.gene91767:intron 50.0%
CAGCTGCGCATGCATTATCG+CGG - chr2.1:49665287-49665306 MS.gene91767:intron 55.0%
GCGGTGCAAGGTGCAAAATG+GGG - chr2.1:49665263-49665282 MS.gene91767:intron 55.0%
GCTGATCAGGTAGGAATCGG+CGG - chr2.1:49665144-49665163 MS.gene91767:intron 55.0%
! CTGAATGACCCTACCGGTTG+TGG - chr2.1:49665016-49665035 MS.gene91767:intron 55.0%
!! GCCAAATTGGCTCGTCGACA+AGG - chr2.1:49665761-49665780 MS.gene91767:intron 55.0%
GCAGACAGCAGCCTGGCTAA+GGG - chr2.1:49664544-49664563 MS.gene91767:intron 60.0%
TGCAGACAGCAGCCTGGCTA+AGG - chr2.1:49664543-49664562 MS.gene91767:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 49663600 49666170 49663600 ID=MS.gene91767
chr2.1 mRNA 49663600 49666170 49663600 ID=MS.gene91767.t1;Parent=MS.gene91767
chr2.1 exon 49665985 49666170 49665985 ID=MS.gene91767.t1.exon1;Parent=MS.gene91767.t1
chr2.1 CDS 49665985 49666170 49665985 ID=cds.MS.gene91767.t1;Parent=MS.gene91767.t1
chr2.1 exon 49665170 49665222 49665170 ID=MS.gene91767.t1.exon2;Parent=MS.gene91767.t1
chr2.1 CDS 49665170 49665222 49665170 ID=cds.MS.gene91767.t1;Parent=MS.gene91767.t1
chr2.1 exon 49664618 49664654 49664618 ID=MS.gene91767.t1.exon3;Parent=MS.gene91767.t1
chr2.1 CDS 49664618 49664654 49664618 ID=cds.MS.gene91767.t1;Parent=MS.gene91767.t1
chr2.1 exon 49664462 49664527 49664462 ID=MS.gene91767.t1.exon4;Parent=MS.gene91767.t1
chr2.1 CDS 49664462 49664527 49664462 ID=cds.MS.gene91767.t1;Parent=MS.gene91767.t1
chr2.1 exon 49664179 49664283 49664179 ID=MS.gene91767.t1.exon5;Parent=MS.gene91767.t1
chr2.1 CDS 49664179 49664283 49664179 ID=cds.MS.gene91767.t1;Parent=MS.gene91767.t1
chr2.1 exon 49663937 49664090 49663937 ID=MS.gene91767.t1.exon6;Parent=MS.gene91767.t1
chr2.1 CDS 49663937 49664090 49663937 ID=cds.MS.gene91767.t1;Parent=MS.gene91767.t1
chr2.1 exon 49663795 49663871 49663795 ID=MS.gene91767.t1.exon7;Parent=MS.gene91767.t1
chr2.1 CDS 49663795 49663871 49663795 ID=cds.MS.gene91767.t1;Parent=MS.gene91767.t1
chr2.1 exon 49663600 49663665 49663600 ID=MS.gene91767.t1.exon8;Parent=MS.gene91767.t1
chr2.1 CDS 49663600 49663665 49663600 ID=cds.MS.gene91767.t1;Parent=MS.gene91767.t1
Gene Sequence

>MS.gene91767

ATGAAGGATGAACTTTCTGTGAAGCTTTCAAGCCCAATTGTTCCTAAAGTGGTGGAAGAAGGTTTGAGCTCAAATGGTCTTCGATTTGATCGGTTGCAGCCATCGGAACAAGAGTTGATTAGAGAAAATAGATTTGAGTTTGGGCAATTTGTAGCTAGGGAAGCTGTGCTTGATGAAGAGTTTTGGGTATGTTTTAAACTGTTGGATAGAAAAAAGCCCGTTTGAATTTGTTTATTTTTTAGCTTATGAAAAATAATTTATGCAAATAAATAAGTTTTTATGTTAATTCATGAGTTCTCACTAACGATAATTGTATCTTCATAAGTTGTTTTTTCATAAACTACTTTGACAAGTTTATGAATAATGCATAAAAGCTTATATTATTTGCATAAAATGTTTTGCATAAGCTCATAAATCAGTCAATTCAAATGGGCCCTTAGTGTATGAAATTGTATGGTTAGTCGATTCTTTTTTGAAATTAATACTAAAATGATGTTTGAAATTGAAAATTCTCAAGGTTTGTTTGATAGTGAATATTCAATTTATTGTCTGACTTGTAGGATTAGTTGATTTGGTTTTGAAATCAACAAAATTTTATTATTATGATGCTTGAAATTGTAAATCTTCGATCATCTTAGAGATTAAATAAACTGATCTAAAATGACTAGTGTGATCGTTGATTACCAAATTTCTACAATTTCATGAACTAAAATGGGGATTCACTTTGTCTGTCTTTTAGGAGTAGATTGATAAGTAAAGCTGTTTTTCAGTTGAAGATGAAAAAGAAAGAAGAAATAAAGCTTAACCTAATGTTGGAATCAAAGAAAAATTGTTTTATAAGTGCATACAACCAATCATTTATCATTCATTTGTACTTTTGTGGAAAAAATAATATACAAAAAATAGCATTTTCTTTTATTTATTGTATATTTTTGAATTCTTTTGCAGACAGCAGCCTGGCTAAGGGCAGAAAGTCATTGGGAGAATCAAACATATGAAAGGTATGATACAAAATACATCACAAATCTCCAATGTTTTTTCATAGGGTTAAATATGTTTTTAGTCCTTACATTTTGCGCCCCGTTGAATTATAGTCCCTTCATTTCATTAAATGTTTTTAAAATCCTCACATTTTATCTCTGTGATCAAAAATAGTCCCTGCTGTTAATTCTCTAACGGAATGCTGATATGGCAGTTAGTGGGTCCCAATTATTTTAGGGTTAAATATGTTTTTCATACATAAGGATTCTGTAGAATGAATTGATAAAATGTGTTCCTTTCATCGTGGTTGTTGTGTTATTGTGTAAAACTTGTGTTGAGCATATTGTGGTACTTGATTTGAGAACAGATTATAAACCAGATCAAGATGGATGATGTCAATAATAGTTTTCTAAATAGTAGAATATAGGAAGTAATCTGAATGACCCTACCGGTTGTGGGTGTAAATCATTTGACTTGATTAACAATAGGTAAGAATTTGGGTAGTACTAACTGCAATTATGTTTTTTTTTTTTAGATATATTGATATCTACAAAAGGAAATTTGCTGATCAGGTAGGAATCGGCGGTGCTTAATTTCCTTACTTAGTACTATACACTGGAGTGTCTTTCATGAAAATTTTAACAAGAATCCCTATTGTTTAGGAATTTAATGCGGTAAAAAAGCGGTGCAAGGTGCAAAATGGGGACAGCTGCGCATGCATTATCGCGGTAAATCAATCTCATCTGAGATTCTGATCTAGTTAAAAAAATTCAGGTTACAAAAAAATATATACTTTAAAGCTCTAACTTTGATTAAAGCTCTAACTTTGTTGAGTTATTTACTGTTTGAAAGTTGATTTTCCTTGACTATGATTCGACTTACGGTGTTTGGATTCATGTTTATCAGGTGAGAAAGGAGCAGAAGAATGTAAAGCGCTCGATAATAAAAAGTGTTGTAGGAACACTTGACTTGAATATCCGATATTTGCTGCAAGGAGAGACTTTTCCTGGGGTACTACTCATTCTTTCTCATCTACTGTTCTGTCTAGACTGATGGTCTTGATGTTTTTCACGACTTAGTCATCATATCATTTCTGCAGGAACGAGACAAAACTCCTTTTTGTTGCAGCATAAACAGAACACCACCAAGTAGATATGGTTACATTGCAAATTTATGTGTTGCCAAATTGGCTCGTCGACAAGGAATTGCAAGCAACATGATGTCTTTTGCTGTTGAAAATGCAAAATCTAATGGTAATATTAACGTTAAGTTGAAGTAACTTTATGGTTTACGCCTGATTTGTGGATTCATTTAGCAGGTGTGAGTCAGGTATATGTGCATGTGGACAGAAATAATAGGCCTGGACAGTTATTGTACCAAAAGATGGGCTTTGAGGTAATGTAATTGTTTTTTTTTTTGACAAAAGGTAATGTAATTGTTGGTTCATCTGTATTTCCAATTTTTGTTATAGATTGTTGCTACATGTGAAATCAATAACTATGGCAATTTCGCCGTCAATTTCAGATGGTTGAAACTGCAAACTCTCGGTTGTTACCAGAGGAAACATACTTGCTACGTTTACAGACGTAA
Protein sequence

>MS.gene91767.t1

MKDELSVKLSSPIVPKVVEEGLSSNGLRFDRLQPSEQELIRENRFEFGQFVAREAVLDEEFWTAAWLRAESHWENQTYERYIDIYKRKFADQEFNAVKKRCKVQNGDSCACIIAVRKEQKNVKRSIIKSVVGTLDLNIRYLLQGETFPGERDKTPFCCSINRTPPSRYGYIANLCVAKLARRQGIASNMMSFAVENAKSNGVSQVYVHVDRNNRPGQLLYQKMGFEMVETANSRLLPEETYLLRLQT