AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91799

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91799.t1 MTR_8g006705 98.693 306 3 1 1 306 1 305 0.0 623
MS.gene91799.t1 MTR_5g013010 58.710 310 95 11 3 304 4 288 1.38e-99 295
MS.gene91799.t1 MTR_4g100550 58.249 297 90 10 1 297 3 265 4.76e-96 285
MS.gene91799.t1 MTR_7g093430 64.706 187 51 4 78 260 98 273 4.15e-70 219
MS.gene91799.t1 MTR_1g054285 70.625 160 28 4 103 262 129 269 1.72e-67 213
MS.gene91799.t1 MTR_2g061030 74.648 142 31 2 129 270 187 323 8.07e-66 210
MS.gene91799.t1 MTR_4g097600 74.809 131 27 2 129 259 115 239 6.76e-64 202
MS.gene91799.t1 MTR_5g014890 65.986 147 44 2 140 281 117 262 3.74e-62 198
MS.gene91799.t1 MTR_1g017090 54.913 173 64 6 91 260 84 245 6.34e-53 175
MS.gene91799.t1 MTR_4g084750 63.710 124 40 1 140 258 59 182 9.86e-50 164
MS.gene91799.t1 MTR_5g013010 51.980 202 72 8 3 197 4 187 1.83e-45 153
MS.gene91799.t1 MTR_2g038625 57.031 128 48 1 132 259 75 195 6.56e-43 147
MS.gene91799.t1 MTR_2g038580 57.031 128 48 1 132 259 75 195 6.56e-43 147
MS.gene91799.t1 MTR_3g103590 64.516 124 42 2 145 268 144 265 9.17e-43 149
MS.gene91799.t1 MTR_4g126900 62.281 114 40 1 148 258 90 203 1.20e-37 133
MS.gene91799.t1 MTR_6g007647 45.631 103 54 1 143 243 30 132 2.81e-19 85.5
MS.gene91799.t1 MTR_6g007647 43.519 108 61 0 143 250 64 171 3.11e-19 86.3
MS.gene91799.t1 MTR_7g010020 47.222 108 48 2 132 235 71 173 3.26e-19 85.9
MS.gene91799.t1 MTR_5g039000 47.059 102 48 1 132 233 69 164 6.13e-19 85.1
MS.gene91799.t1 MTR_6g011610 40.164 122 73 0 112 233 62 183 1.91e-18 84.0
MS.gene91799.t1 MTR_6g011610 40.164 122 73 0 112 233 43 164 1.95e-18 83.6
MS.gene91799.t1 MTR_4g107650 45.690 116 61 1 120 233 67 182 3.15e-18 84.0
MS.gene91799.t1 MTR_8g468210 45.545 101 49 1 132 232 69 163 4.03e-18 82.8
MS.gene91799.t1 MTR_5g038280 48.515 101 44 2 146 239 87 186 1.05e-17 82.4
MS.gene91799.t1 MTR_1g061660 44.681 94 51 1 141 234 55 147 2.93e-17 79.7
MS.gene91799.t1 MTR_3g086790 36.875 160 79 5 136 285 49 196 3.44e-17 80.5
MS.gene91799.t1 MTR_3g080100 37.857 140 82 2 146 281 20 158 9.62e-17 77.8
MS.gene91799.t1 MTR_7g103340 36.806 144 87 3 140 280 56 198 1.02e-16 78.2
MS.gene91799.t1 MTR_3g080100 37.857 140 82 2 146 281 59 197 1.72e-16 77.8
MS.gene91799.t1 MTR_8g089895 37.838 148 79 4 133 273 43 184 3.63e-16 77.8
MS.gene91799.t1 MTR_8g469430 46.809 94 43 1 146 232 89 182 8.99e-16 76.3
MS.gene91799.t1 MTR_5g019650 42.593 108 59 2 135 240 43 149 1.57e-12 66.2
MS.gene91799.t1 MTR_5g019680 41.667 108 57 2 133 240 41 142 1.90e-12 65.5
MS.gene91799.t1 MTR_3g092150 41.667 96 43 2 149 234 41 133 2.37e-11 63.2
MS.gene91799.t1 MTR_8g026960 33.588 131 74 2 150 280 38 155 5.36e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91799.t1 AT3G60390 59.396 298 93 9 16 303 30 309 2.12e-102 302
MS.gene91799.t1 AT5G47370 53.674 313 87 13 1 301 3 269 8.38e-90 269
MS.gene91799.t1 AT2G44910 55.183 328 111 12 1 304 1 316 8.75e-88 265
MS.gene91799.t1 AT4G17460 52.769 307 98 11 1 299 3 270 4.27e-85 257
MS.gene91799.t1 AT4G16780 55.082 305 88 9 1 296 2 266 2.44e-83 253
MS.gene91799.t1 AT5G06710 66.138 189 49 5 90 271 134 314 6.82e-73 228
MS.gene91799.t1 AT4G37790 60.795 176 59 3 120 295 106 271 1.32e-65 207
MS.gene91799.t1 AT2G22800 75.833 120 28 1 140 259 107 225 3.66e-61 196
MS.gene91799.t1 AT2G01430 49.223 193 86 5 91 281 88 270 6.82e-50 167
MS.gene91799.t1 AT1G70920 56.028 141 48 2 130 270 59 185 3.80e-41 142
MS.gene91799.t1 AT1G70920 56.028 141 48 2 130 270 29 155 4.04e-41 141
MS.gene91799.t1 AT5G06710 59.649 114 32 4 91 197 135 241 6.57e-30 114
MS.gene91799.t1 AT1G69780 44.118 136 66 2 98 233 47 172 7.16e-22 93.6
MS.gene91799.t1 AT2G01430 53.846 91 39 2 109 197 101 190 7.94e-22 91.7
MS.gene91799.t1 AT1G26960 44.444 117 56 2 120 233 48 158 4.51e-19 85.1
MS.gene91799.t1 AT3G01470 48.387 93 41 1 146 231 68 160 1.33e-17 81.3
MS.gene91799.t1 AT5G65310 42.478 113 58 1 128 233 54 166 4.48e-17 80.5
MS.gene91799.t1 AT5G65310 42.478 113 58 1 128 233 36 148 5.79e-17 80.1
MS.gene91799.t1 AT5G15150 47.872 94 45 1 146 235 115 208 4.99e-16 77.4
MS.gene91799.t1 AT3G01220 45.745 94 47 1 146 235 87 180 2.20e-15 75.5
MS.gene91799.t1 AT5G03790 43.820 89 50 0 146 234 77 165 2.82e-15 74.3
MS.gene91799.t1 AT2G18550 43.137 102 53 1 140 241 55 151 8.60e-15 72.4
MS.gene91799.t1 AT4G40060 43.299 97 48 1 144 233 57 153 1.34e-14 73.2
MS.gene91799.t1 AT1G27045 45.833 96 45 1 146 234 68 163 2.72e-14 71.6
MS.gene91799.t1 AT1G27045 56.061 66 29 0 146 211 68 133 3.71e-14 70.9
MS.gene91799.t1 AT2G22430 45.833 96 48 1 144 235 60 155 5.09e-14 71.6
MS.gene91799.t1 AT1G27045 56.061 66 29 0 146 211 25 90 5.37e-14 69.7
MS.gene91799.t1 AT1G27045 56.061 66 29 0 146 211 25 90 5.37e-14 69.7
MS.gene91799.t1 AT1G27045 56.061 66 29 0 146 211 17 82 6.32e-14 69.3
MS.gene91799.t1 AT2G36610 36.937 111 58 2 136 234 57 167 2.09e-13 67.8
MS.gene91799.t1 AT2G46680 42.105 95 51 1 149 239 35 129 4.92e-13 68.2
MS.gene91799.t1 AT2G46680 42.045 88 51 0 149 236 35 122 6.42e-13 67.8
MS.gene91799.t1 AT4G36740 40.385 104 55 2 138 241 50 146 6.64e-13 67.0
MS.gene91799.t1 AT4G36740 40.385 104 55 2 138 241 49 145 7.00e-13 67.0
MS.gene91799.t1 AT5G03790 41.758 91 53 0 146 236 77 167 2.08e-12 65.5
MS.gene91799.t1 AT3G61890 33.333 126 84 0 149 274 33 158 1.71e-11 63.5
MS.gene91799.t1 AT5G06710 45.000 100 41 4 91 183 135 227 2.62e-11 62.8
MS.gene91799.t1 AT5G06710 45.000 100 41 4 91 183 135 227 2.62e-11 62.8

Find 96 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATGGTCGGGAACGATTT+TGG 0.169525 8.3:+81390691 None:intergenic
GAAAGATGATGAATTTAGTT+TGG 0.275241 8.3:-81393021 MS.gene91799:CDS
GAAAACACATACCATGAAAA+TGG 0.282242 8.3:+81392871 None:intergenic
CACTTCAGTTTGCTTCAACT+TGG 0.366945 8.3:+81390998 None:intergenic
TTAAGCTTGAGTTTAGGATT+TGG 0.367633 8.3:-81392996 MS.gene91799:CDS
AAAGATGATGAATTTAGTTT+GGG 0.373079 8.3:-81393020 MS.gene91799:CDS
CTTTGGTTTGTAACCGTTTG+AGG 0.393528 8.3:+81392915 None:intergenic
TGCGGCGGCCGTCGCCGCCA+TGG 0.395192 8.3:+81392290 None:intergenic
AAAAGGAAGTGCAAGAGCTT+AGG 0.411234 8.3:-81390917 MS.gene91799:CDS
TTGGGTTTAAGCTTGAGTTT+AGG 0.412484 8.3:-81393002 MS.gene91799:CDS
GGCCAACACCTGTCAACCCT+TGG 0.414534 8.3:-81390728 MS.gene91799:CDS
GAGTCACCTTCAAAGGAGTT+TGG 0.430355 8.3:+81392952 None:intergenic
AACCACACCTCCACTTGTCT+TGG 0.434860 8.3:+81391686 None:intergenic
AAAGGAAGTGCAAGAGCTTA+GGG 0.439484 8.3:-81390916 MS.gene91799:CDS
AGTTATTGAAGGAAACCCTT+TGG 0.441554 8.3:+81392898 None:intergenic
GGTGTTGGCCGTTGAACACT+TGG 0.442745 8.3:+81390741 None:intergenic
CAACAACCAAACTCCTTTGA+AGG 0.444372 8.3:-81392958 MS.gene91799:CDS
TCTGCTTCAGCCAACCCGTC+AGG 0.450595 8.3:-81390765 MS.gene91799:CDS
GTTGTTGGAAGAAACTTTCA+AGG 0.454317 8.3:-81392052 MS.gene91799:CDS
AGCAGCAGCAGCTGCTGATG+AGG 0.465286 8.3:+81390794 None:intergenic
GTTGAACACTTGGGCCTGAC+GGG 0.468214 8.3:+81390751 None:intergenic
GCGGCCGTCGCCGCCATGGA+TGG 0.472789 8.3:+81392294 None:intergenic
GCCCAAGGGTTGACAGGTGT+TGG 0.475640 8.3:+81390726 None:intergenic
GCCAACACCTGTCAACCCTT+GGG 0.479663 8.3:-81390727 MS.gene91799:CDS
GATGATGACGGCGGAGGTTG+CGG 0.480696 8.3:-81392129 MS.gene91799:CDS
AGACTCTAACTGATGAGAAT+AGG 0.482124 8.3:-81390947 MS.gene91799:CDS
AACACTTGGGCCTGACGGGT+TGG 0.484425 8.3:+81390755 None:intergenic
ATGCTTGACACGGTGCTGTT+CGG 0.485523 8.3:+81392240 None:intergenic
GGCGGAGGTTGCGGTGGCGA+CGG 0.488707 8.3:-81392120 MS.gene91799:CDS
CGTTGAACACTTGGGCCTGA+CGG 0.491085 8.3:+81390750 None:intergenic
GGTTCATGTTCTCGCGGCGG+CGG 0.496150 8.3:-81392159 MS.gene91799:CDS
AGCACCGTGTCAAGCATTAG+TGG 0.497591 8.3:-81392234 MS.gene91799:CDS
GAAGGAACAGTCAATGTTGT+TGG 0.498061 8.3:-81392067 MS.gene91799:CDS
ATTGCCGCCCAAGGGTTGAC+AGG 0.503094 8.3:+81390720 None:intergenic
TTCATTTGCATGTAGAGTTG+TGG 0.503551 8.3:+81390879 None:intergenic
CGGCGACACGCTCGCACGAA+GGG 0.511247 8.3:+81390832 None:intergenic
TCATTTCTCCGCGGAATAGA+CGG 0.512734 8.3:-81392330 MS.gene91799:CDS
TGAAAACGACGCCGTCGAAA+GGG 0.514530 8.3:-81392181 MS.gene91799:CDS
TGGATAGACATTGCCGCCCA+AGG 0.515878 8.3:+81390711 None:intergenic
AAAATGGAACAAGTTATTGA+AGG 0.520682 8.3:+81392887 None:intergenic
AGGAGCGAAAGAGAAGGAAA+CGG 0.525139 8.3:-81392207 MS.gene91799:CDS
CATGCACAAGCCTCCTCAAA+CGG 0.530251 8.3:-81392928 MS.gene91799:CDS
GGAGCATAATACTCTGAATC+CGG 0.531921 8.3:-81392031 MS.gene91799:intron
GGAAAGAGGAGCGAAAGAGA+AGG 0.537565 8.3:-81392213 MS.gene91799:CDS
GCCGCATTCGACGATGAAAA+CGG 0.539309 8.3:-81392273 MS.gene91799:CDS
TGCATGTGAGTCACCTTCAA+AGG 0.543980 8.3:+81392945 None:intergenic
ACTACCATCCATGGCGGCGA+CGG 0.547385 8.3:-81392298 MS.gene91799:CDS
CAACACTCCACTACCATCCA+TGG 0.551656 8.3:-81392307 MS.gene91799:CDS
TAGAGCGAATACTCATGGTC+GGG 0.553208 8.3:+81390680 None:intergenic
CTCTAACTGATGAGAATAGG+AGG 0.555223 8.3:-81390944 MS.gene91799:CDS
AGGTGTGGTTTCAAAACAGA+AGG 0.557390 8.3:-81391673 MS.gene91799:CDS
TCAGAAACAAAAGCAAGCAT+TGG 0.557840 8.3:-81391729 MS.gene91799:intron
GTCGCCGCCATGGATGGTAG+TGG 0.558543 8.3:+81392300 None:intergenic
TGAGAATAGGAGGTTGCAAA+AGG 0.565911 8.3:-81390934 MS.gene91799:CDS
CTCAAACGGTTACAAACCAA+AGG 0.569424 8.3:-81392914 MS.gene91799:CDS
TGACGGGTTGGCTGAAGCAG+AGG 0.570759 8.3:+81390767 None:intergenic
ATGAAAACGACGCCGTCGAA+AGG 0.571630 8.3:-81392182 MS.gene91799:CDS
GGATAGACATTGCCGCCCAA+GGG 0.571951 8.3:+81390712 None:intergenic
GGGCACATTGTAAGAGTGGT+GGG 0.573198 8.3:+81390852 None:intergenic
CAAGTTGAAGCAAACTGAAG+TGG 0.573772 8.3:-81390997 MS.gene91799:CDS
CTAGAGCGAATACTCATGGT+CGG 0.575049 8.3:+81390679 None:intergenic
GACGGGTTGGCTGAAGCAGA+GGG 0.587441 8.3:+81390768 None:intergenic
CGAAGGGCACATTGTAAGAG+TGG 0.588926 8.3:+81390848 None:intergenic
TGTCAAGCATTAGTGGAAAG+AGG 0.589483 8.3:-81392227 MS.gene91799:CDS
AACACCTGTCAACCCTTGGG+CGG 0.591322 8.3:-81390724 MS.gene91799:CDS
TCAAACGGTTACAAACCAAA+GGG 0.592760 8.3:-81392913 MS.gene91799:CDS
ACATTGTAAGAGTGGTGGGA+GGG 0.595529 8.3:+81390856 None:intergenic
GTGTTGGCCGTTGAACACTT+GGG 0.596735 8.3:+81390742 None:intergenic
ACGGCGACACGCTCGCACGA+AGG 0.599222 8.3:+81390831 None:intergenic
AGCCAAGACAAGTGGAGGTG+TGG 0.599876 8.3:-81391688 MS.gene91799:CDS
TGGTTTGTAACCGTTTGAGG+AGG 0.599884 8.3:+81392918 None:intergenic
AGGGCACATTGTAAGAGTGG+TGG 0.603305 8.3:+81390851 None:intergenic
CGTCAGGCCCAAGTGTTCAA+CGG 0.606766 8.3:-81390749 MS.gene91799:CDS
AGAACATGAACCCCTTTCGA+CGG 0.611067 8.3:+81392170 None:intergenic
CACATTGTAAGAGTGGTGGG+AGG 0.613092 8.3:+81390855 None:intergenic
GAAAACGACGCCGTCGAAAG+GGG 0.619048 8.3:-81392180 MS.gene91799:CDS
CTTTCCACTAATGCTTGACA+CGG 0.619897 8.3:+81392230 None:intergenic
GTGGCGACGGTGATTCGTCA+AGG 0.623006 8.3:-81392107 MS.gene91799:CDS
GAATCTGAAGCCAAGACAAG+TGG 0.625066 8.3:-81391696 MS.gene91799:CDS
GATGACGGCGGAGGTTGCGG+TGG 0.629392 8.3:-81392126 MS.gene91799:CDS
GAAGAAGCTGAGGTTGTCGA+AGG 0.629748 8.3:-81392085 MS.gene91799:CDS
AGTGATGATGATGACGGCGG+AGG 0.634764 8.3:-81392135 MS.gene91799:CDS
TCTGAAGCCAAGACAAGTGG+AGG 0.635230 8.3:-81391693 MS.gene91799:CDS
ATTCGTCAAGGAAGAAGCTG+AGG 0.662832 8.3:-81392095 MS.gene91799:CDS
GAAAGGGGTTCATGTTCTCG+CGG 0.668678 8.3:-81392165 MS.gene91799:CDS
GGCGGAAGTGATGATGATGA+CGG 0.668902 8.3:-81392141 MS.gene91799:CDS
GGGTTGGCTGAAGCAGAGGG+AGG 0.674475 8.3:+81390771 None:intergenic
GGTTTCAAAACAGAAGGGCA+AGG 0.677211 8.3:-81391667 MS.gene91799:intron
CAGATCTAAGCACAGAAACG+AGG 0.678976 8.3:-81392353 MS.gene91799:CDS
GAGTGTTGCCGTCTATTCCG+CGG 0.683806 8.3:+81392322 None:intergenic
TGAGGACGATGCAGATGACA+CGG 0.688825 8.3:+81390812 None:intergenic
GGTGTGGTTTCAAAACAGAA+GGG 0.691196 8.3:-81391672 MS.gene91799:CDS
AGGGGTTCATGTTCTCGCGG+CGG 0.699189 8.3:-81392162 MS.gene91799:CDS
CACTCCACTACCATCCATGG+CGG 0.704044 8.3:-81392304 MS.gene91799:CDS
GGAAGTGATGATGATGACGG+CGG 0.716365 8.3:-81392138 MS.gene91799:CDS
GAAACGAGGTCATTTCTCCG+CGG 0.771153 8.3:-81392339 MS.gene91799:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAAAAAAAAAAAAA+TGG + chr8.3:81391127-81391146 None:intergenic 0.0%
!!! TCATTTTTGTTTTTTTTTTT+GGG - chr8.3:81391033-81391052 MS.gene91799:intron 10.0%
!! AAAAAAACAAAAATGAGAAA+TGG + chr8.3:81391029-81391048 None:intergenic 15.0%
!! AAAAAACAAAAATGAGAAAT+GGG + chr8.3:81391028-81391047 None:intergenic 15.0%
!! AATCAGAAAGTAAATTAAAA+TGG + chr8.3:81391243-81391262 None:intergenic 15.0%
!! ATCAGAAAGTAAATTAAAAT+GGG + chr8.3:81391242-81391261 None:intergenic 15.0%
!! GAAAAAAAAAATTTGAAGAA+AGG + chr8.3:81390898-81390917 None:intergenic 15.0%
!! GTAATTATCAACTAAATTTA+AGG + chr8.3:81391310-81391329 None:intergenic 15.0%
!!! ATTTCTCTTCATATTTTTTA+GGG - chr8.3:81390989-81391008 MS.gene91799:CDS 15.0%
!!! CTCATTTTTGTTTTTTTTTT+TGG - chr8.3:81391032-81391051 MS.gene91799:intron 15.0%
!!! GTCATTTTTGAATATTAATT+TGG - chr8.3:81392106-81392125 MS.gene91799:CDS 15.0%
!!! TTATTATAATCTTTTGATGA+TGG - chr8.3:81392466-81392485 MS.gene91799:intron 15.0%
!!! TTGTTTTTATTATTGTTTTG+AGG - chr8.3:81391835-81391854 MS.gene91799:intron 15.0%
!!! TTTTTCATTATATGATTCAA+GGG + chr8.3:81391100-81391119 None:intergenic 15.0%
!! AAAAACAAAAATGAGAAATG+GGG + chr8.3:81391027-81391046 None:intergenic 20.0%
!! GGAATTAAAAATGAAAAGAA+TGG + chr8.3:81390920-81390939 None:intergenic 20.0%
!! TGTAAACTCTTAAAATTGAA+AGG + chr8.3:81392514-81392533 None:intergenic 20.0%
!! TTTATGAGGAGTAAAAAATT+AGG - chr8.3:81392357-81392376 MS.gene91799:intron 20.0%
!!! AAAGATGATGAATTTAGTTT+GGG - chr8.3:81390701-81390720 MS.gene91799:CDS 20.0%
!!! AGGTTGTCTTTTTTTTTTTT+TGG - chr8.3:81391866-81391885 MS.gene91799:intron 20.0%
!!! GATTTCTCTTCATATTTTTT+AGG - chr8.3:81390988-81391007 MS.gene91799:CDS 20.0%
!!! GTAATTCAGTTTTATGTTAA+GGG - chr8.3:81391737-81391756 MS.gene91799:intron 20.0%
!!! GTTTTTCATTATATGATTCA+AGG + chr8.3:81391101-81391120 None:intergenic 20.0%
!!! TATATTTGGAAGTGTAAATT+TGG - chr8.3:81391792-81391811 MS.gene91799:intron 20.0%
!!! TGTAATTCAGTTTTATGTTA+AGG - chr8.3:81391736-81391755 MS.gene91799:intron 20.0%
!!! TTTTTTTGGTTGAGTAATTA+AGG - chr8.3:81391880-81391899 MS.gene91799:intron 20.0%
! AAAATGGAACAAGTTATTGA+AGG + chr8.3:81390837-81390856 None:intergenic 25.0%
! AAAATTAACAATGCATCAAG+AGG + chr8.3:81390941-81390960 None:intergenic 25.0%
! ACTGTTTGGATCATATTAAT+TGG - chr8.3:81392227-81392246 MS.gene91799:CDS 25.0%
! ATATGAAGAGAAATCAAGAA+TGG + chr8.3:81390983-81391002 None:intergenic 25.0%
! ATTCATCTCATCAAAGAAAA+TGG + chr8.3:81391198-81391217 None:intergenic 25.0%
! GAAAGATGATGAATTTAGTT+TGG - chr8.3:81390700-81390719 MS.gene91799:CDS 25.0%
! GAAAGGAAACATAGAAATTT+AGG + chr8.3:81390881-81390900 None:intergenic 25.0%
! GAATTTCATTACAGGATAAA+AGG - chr8.3:81391768-81391787 MS.gene91799:intron 25.0%
! TATGAAGAGAAATCAAGAAT+GGG + chr8.3:81390982-81391001 None:intergenic 25.0%
! TTCATCTCATCAAAGAAAAT+GGG + chr8.3:81391197-81391216 None:intergenic 25.0%
!! AACACAACTTAACTTTTATG+AGG - chr8.3:81392343-81392362 MS.gene91799:CDS 25.0%
!! CTTATTTGGAATTTCATTAC+AGG - chr8.3:81391760-81391779 MS.gene91799:intron 25.0%
!! TTTTATGTTAAGGGCTTATT+TGG - chr8.3:81391746-81391765 MS.gene91799:intron 25.0%
!!! AATAACTTGTTCCATTTTCA+TGG - chr8.3:81390839-81390858 MS.gene91799:CDS 25.0%
!!! ATAATCTTTTGATGATGGAT+TGG - chr8.3:81392471-81392490 MS.gene91799:intron 25.0%
!!! TAATCTTTTGATGATGGATT+GGG - chr8.3:81392472-81392491 MS.gene91799:intron 25.0%
!!! TGTTTTTTTTTTTGGGTGAA+TGG - chr8.3:81391040-81391059 MS.gene91799:intron 25.0%
ACAGGATAAAAGGCTATATT+TGG - chr8.3:81391778-81391797 MS.gene91799:intron 30.0%
GAAAACACATACCATGAAAA+TGG + chr8.3:81390853-81390872 None:intergenic 30.0%
GTTGTATTGTAACAAGTATG+TGG - chr8.3:81392397-81392416 MS.gene91799:intron 30.0%
TAAACATTGTTGTGATGTTG+TGG - chr8.3:81392140-81392159 MS.gene91799:CDS 30.0%
TAATATGATCCAAACAGTGT+GGG + chr8.3:81392225-81392244 None:intergenic 30.0%
TTAATATGATCCAAACAGTG+TGG + chr8.3:81392226-81392245 None:intergenic 30.0%
! TTAAGCTTGAGTTTAGGATT+TGG - chr8.3:81390725-81390744 MS.gene91799:CDS 30.0%
!!! ATTGTTTTGAGGTTATTCTG+AGG - chr8.3:81391846-81391865 MS.gene91799:intron 30.0%
!!! TTTTTTTGGGTGAATGGTAA+GGG - chr8.3:81391046-81391065 MS.gene91799:intron 30.0%
!!! TTTTTTTTGGGTGAATGGTA+AGG - chr8.3:81391045-81391064 MS.gene91799:intron 30.0%
AAAATGTGACATGAGTGCTT+TGG - chr8.3:81392685-81392704 MS.gene91799:intron 35.0%
AATATGATCCAAACAGTGTG+GGG + chr8.3:81392224-81392243 None:intergenic 35.0%
AGACTCTAACTGATGAGAAT+AGG - chr8.3:81392774-81392793 MS.gene91799:intron 35.0%
AGTTATTGAAGGAAACCCTT+TGG + chr8.3:81390826-81390845 None:intergenic 35.0%
CACAACAAATCCACATACAT+TGG + chr8.3:81392606-81392625 None:intergenic 35.0%
CATGTACAAACCAATGTATG+TGG - chr8.3:81392593-81392612 MS.gene91799:intron 35.0%
GGTTATACCAAAGATGAGAA+GGG + chr8.3:81391079-81391098 None:intergenic 35.0%
GTTATACCAAAGATGAGAAG+GGG + chr8.3:81391078-81391097 None:intergenic 35.0%
GTTGTTGGAAGAAACTTTCA+AGG - chr8.3:81391669-81391688 MS.gene91799:CDS 35.0%
TATTGTGTTCCATGCTGTTA+TGG - chr8.3:81392653-81392672 MS.gene91799:intron 35.0%
TCAAACGGTTACAAACCAAA+GGG - chr8.3:81390808-81390827 MS.gene91799:CDS 35.0%
TCAGAAACAAAAGCAAGCAT+TGG - chr8.3:81391992-81392011 MS.gene91799:intron 35.0%
TTCATTTGCATGTAGAGTTG+TGG + chr8.3:81392845-81392864 None:intergenic 35.0%
TTGGGTTTAAGCTTGAGTTT+AGG - chr8.3:81390719-81390738 MS.gene91799:CDS 35.0%
! TTTTTCCTTCCATAACAGCA+TGG + chr8.3:81392665-81392684 None:intergenic 35.0%
!! TTTGCATGTGAGTGTTTTAG+TGG + chr8.3:81391340-81391359 None:intergenic 35.0%
!!! TTTTTTGGGTGAATGGTAAG+GGG - chr8.3:81391047-81391066 MS.gene91799:intron 35.0%
ACAGTGTGGGGTATATAGTA+TGG + chr8.3:81392212-81392231 None:intergenic 40.0%
ACTATATACCCCACACTGTT+TGG - chr8.3:81392213-81392232 MS.gene91799:CDS 40.0%
AGGTGTGGTTTCAAAACAGA+AGG - chr8.3:81392048-81392067 MS.gene91799:CDS 40.0%
CAACAACCAAACTCCTTTGA+AGG - chr8.3:81390763-81390782 MS.gene91799:CDS 40.0%
CTCAAACGGTTACAAACCAA+AGG - chr8.3:81390807-81390826 MS.gene91799:CDS 40.0%
CTCTAACTGATGAGAATAGG+AGG - chr8.3:81392777-81392796 MS.gene91799:intron 40.0%
CTTTCCACTAATGCTTGACA+CGG + chr8.3:81391494-81391513 None:intergenic 40.0%
GAAGGAACAGTCAATGTTGT+TGG - chr8.3:81391654-81391673 MS.gene91799:intron 40.0%
GGAGCATAATACTCTGAATC+CGG - chr8.3:81391690-81391709 MS.gene91799:CDS 40.0%
GGGTTATACCAAAGATGAGA+AGG + chr8.3:81391080-81391099 None:intergenic 40.0%
GGTGTGGTTTCAAAACAGAA+GGG - chr8.3:81392049-81392068 MS.gene91799:CDS 40.0%
GTGGCAACATGAGTATGTTA+GGG - chr8.3:81392416-81392435 MS.gene91799:intron 40.0%
TACCACTACAACAAACTCAC+CGG + chr8.3:81391712-81391731 None:intergenic 40.0%
TGAGAATAGGAGGTTGCAAA+AGG - chr8.3:81392787-81392806 MS.gene91799:intron 40.0%
TGTCAAGCATTAGTGGAAAG+AGG - chr8.3:81391494-81391513 MS.gene91799:intron 40.0%
TGTGGCAACATGAGTATGTT+AGG - chr8.3:81392415-81392434 MS.gene91799:intron 40.0%
! AAAAGGAAGTGCAAGAGCTT+AGG - chr8.3:81392804-81392823 MS.gene91799:intron 40.0%
! AAAGGAAGTGCAAGAGCTTA+GGG - chr8.3:81392805-81392824 MS.gene91799:intron 40.0%
! CAAGTTGAAGCAAACTGAAG+TGG - chr8.3:81392724-81392743 MS.gene91799:intron 40.0%
! CACTTCAGTTTGCTTCAACT+TGG + chr8.3:81392726-81392745 None:intergenic 40.0%
! CATGCTTTTGTGCATGTAGT+AGG + chr8.3:81392446-81392465 None:intergenic 40.0%
! CTTTTGTGCATGTAGTAGGT+GGG + chr8.3:81392442-81392461 None:intergenic 40.0%
!! CTTTGGTTTGTAACCGTTTG+AGG + chr8.3:81390809-81390828 None:intergenic 40.0%
!!! CTTTTGATGATGGATTGGGA+AGG - chr8.3:81392476-81392495 MS.gene91799:intron 40.0%
AGAACATGAACCCCTTTCGA+CGG + chr8.3:81391554-81391573 None:intergenic 45.0%
AGGAGCGAAAGAGAAGGAAA+CGG - chr8.3:81391514-81391533 MS.gene91799:intron 45.0%
AGGTGAGCTTTCTTCTTCTC+AGG - chr8.3:81392074-81392093 MS.gene91799:CDS 45.0%
ATTCGTCAAGGAAGAAGCTG+AGG - chr8.3:81391626-81391645 MS.gene91799:intron 45.0%
CAGATCTAAGCACAGAAACG+AGG - chr8.3:81391368-81391387 MS.gene91799:intron 45.0%
GAAAAGCCCCTTCTCATCTT+TGG - chr8.3:81391069-81391088 MS.gene91799:intron 45.0%
GAGTCACCTTCAAAGGAGTT+TGG + chr8.3:81390772-81390791 None:intergenic 45.0%
GGTGAGCTTTCTTCTTCTCA+GGG - chr8.3:81392075-81392094 MS.gene91799:CDS 45.0%
GGTTTCAAAACAGAAGGGCA+AGG - chr8.3:81392054-81392073 MS.gene91799:CDS 45.0%
GTGAGCTTTCTTCTTCTCAG+GGG - chr8.3:81392076-81392095 MS.gene91799:CDS 45.0%
GTGTTCCATGCTGTTATGGA+AGG - chr8.3:81392657-81392676 MS.gene91799:intron 45.0%
TCATTTCTCCGCGGAATAGA+CGG - chr8.3:81391391-81391410 MS.gene91799:intron 45.0%
TGCATGTGAGTCACCTTCAA+AGG + chr8.3:81390779-81390798 None:intergenic 45.0%
! ACATTGTAAGAGTGGTGGGA+GGG + chr8.3:81392868-81392887 None:intergenic 45.0%
! GAATCTGAAGCCAAGACAAG+TGG - chr8.3:81392025-81392044 MS.gene91799:intron 45.0%
! GCTTTTGTGCATGTAGTAGG+TGG + chr8.3:81392443-81392462 None:intergenic 45.0%
! GTGCTTTGGTTCAATGATGC+AGG - chr8.3:81392699-81392718 MS.gene91799:intron 45.0%
! TCCGTTTTCATCGTCGAATG+CGG + chr8.3:81391452-81391471 None:intergenic 45.0%
! TGGTTTGTAACCGTTTGAGG+AGG + chr8.3:81390806-81390825 None:intergenic 45.0%
!! ATCCGGTGAGTTTGTTGTAG+TGG - chr8.3:81391707-81391726 MS.gene91799:CDS 45.0%
!! TATTTATTTATGAATTAAAA+CGG - chr8.3:81391266-81391285 MS.gene91799:intron 5.0%
AACCACACCTCCACTTGTCT+TGG + chr8.3:81392038-81392057 None:intergenic 50.0%
AGCACCGTGTCAAGCATTAG+TGG - chr8.3:81391487-81391506 MS.gene91799:intron 50.0%
AGGGCACATTGTAAGAGTGG+TGG + chr8.3:81392873-81392892 None:intergenic 50.0%
ATGAAAACGACGCCGTCGAA+AGG - chr8.3:81391539-81391558 MS.gene91799:intron 50.0%
CAACACTCCACTACCATCCA+TGG - chr8.3:81391414-81391433 MS.gene91799:intron 50.0%
CATGCACAAGCCTCCTCAAA+CGG - chr8.3:81390793-81390812 MS.gene91799:CDS 50.0%
GAAACGAGGTCATTTCTCCG+CGG - chr8.3:81391382-81391401 MS.gene91799:intron 50.0%
GAAAGGGGTTCATGTTCTCG+CGG - chr8.3:81391556-81391575 MS.gene91799:intron 50.0%
GAAGAAGCTGAGGTTGTCGA+AGG - chr8.3:81391636-81391655 MS.gene91799:intron 50.0%
GCCGCATTCGACGATGAAAA+CGG - chr8.3:81391448-81391467 MS.gene91799:intron 50.0%
GGAAAGAGGAGCGAAAGAGA+AGG - chr8.3:81391508-81391527 MS.gene91799:intron 50.0%
GGGCACATTGTAAGAGTGGT+GGG + chr8.3:81392872-81392891 None:intergenic 50.0%
TGAAAACGACGCCGTCGAAA+GGG - chr8.3:81391540-81391559 MS.gene91799:intron 50.0%
TGAGGACGATGCAGATGACA+CGG + chr8.3:81392912-81392931 None:intergenic 50.0%
! CACATTGTAAGAGTGGTGGG+AGG + chr8.3:81392869-81392888 None:intergenic 50.0%
! CGAAGGGCACATTGTAAGAG+TGG + chr8.3:81392876-81392895 None:intergenic 50.0%
! GGCGGAAGTGATGATGATGA+CGG - chr8.3:81391580-81391599 MS.gene91799:intron 50.0%
! GTGTTGGCCGTTGAACACTT+GGG + chr8.3:81392982-81393001 None:intergenic 50.0%
! GTTTTCATCGTCGAATGCGG+CGG + chr8.3:81391449-81391468 None:intergenic 50.0%
! TCTGAAGCCAAGACAAGTGG+AGG - chr8.3:81392028-81392047 MS.gene91799:intron 50.0%
!! ATGCTTGACACGGTGCTGTT+CGG + chr8.3:81391484-81391503 None:intergenic 50.0%
!! GGAAGTGATGATGATGACGG+CGG - chr8.3:81391583-81391602 MS.gene91799:intron 50.0%
AACACCTGTCAACCCTTGGG+CGG - chr8.3:81392997-81393016 MS.gene91799:CDS 55.0%
AGCCAAGACAAGTGGAGGTG+TGG - chr8.3:81392033-81392052 MS.gene91799:CDS 55.0%
CACTCCACTACCATCCATGG+CGG - chr8.3:81391417-81391436 MS.gene91799:intron 55.0%
CGTCAGGCCCAAGTGTTCAA+CGG - chr8.3:81392972-81392991 MS.gene91799:CDS 55.0%
CGTTGAACACTTGGGCCTGA+CGG + chr8.3:81392974-81392993 None:intergenic 55.0%
GAAAACGACGCCGTCGAAAG+GGG - chr8.3:81391541-81391560 MS.gene91799:intron 55.0%
GCCAACACCTGTCAACCCTT+GGG - chr8.3:81392994-81393013 MS.gene91799:CDS 55.0%
GGATAGACATTGCCGCCCAA+GGG + chr8.3:81393012-81393031 None:intergenic 55.0%
GTTGAACACTTGGGCCTGAC+GGG + chr8.3:81392973-81392992 None:intergenic 55.0%
TGGATAGACATTGCCGCCCA+AGG + chr8.3:81393013-81393032 None:intergenic 55.0%
! GAGTGTTGCCGTCTATTCCG+CGG + chr8.3:81391402-81391421 None:intergenic 55.0%
!! AGTGATGATGATGACGGCGG+AGG - chr8.3:81391586-81391605 MS.gene91799:intron 55.0%
!! GGTGTTGGCCGTTGAACACT+TGG + chr8.3:81392983-81393002 None:intergenic 55.0%
ACTACCATCCATGGCGGCGA+CGG - chr8.3:81391423-81391442 MS.gene91799:intron 60.0%
AGCAGCAGCAGCTGCTGATG+AGG + chr8.3:81392930-81392949 None:intergenic 60.0%
AGGGGTTCATGTTCTCGCGG+CGG - chr8.3:81391559-81391578 MS.gene91799:intron 60.0%
ATTGCCGCCCAAGGGTTGAC+AGG + chr8.3:81393004-81393023 None:intergenic 60.0%
GCCCAAGGGTTGACAGGTGT+TGG + chr8.3:81392998-81393017 None:intergenic 60.0%
GGCCAACACCTGTCAACCCT+TGG - chr8.3:81392993-81393012 MS.gene91799:CDS 60.0%
GTGGCGACGGTGATTCGTCA+AGG - chr8.3:81391614-81391633 MS.gene91799:intron 60.0%
TCTGCTTCAGCCAACCCGTC+AGG - chr8.3:81392956-81392975 MS.gene91799:CDS 60.0%
! AACACTTGGGCCTGACGGGT+TGG + chr8.3:81392969-81392988 None:intergenic 60.0%
!! GACGGGTTGGCTGAAGCAGA+GGG + chr8.3:81392956-81392975 None:intergenic 60.0%
!! GATGATGACGGCGGAGGTTG+CGG - chr8.3:81391592-81391611 MS.gene91799:intron 60.0%
!! TGACGGGTTGGCTGAAGCAG+AGG + chr8.3:81392957-81392976 None:intergenic 60.0%
GGTTCATGTTCTCGCGGCGG+CGG - chr8.3:81391562-81391581 MS.gene91799:intron 65.0%
GTCGCCGCCATGGATGGTAG+TGG + chr8.3:81391424-81391443 None:intergenic 65.0%
!! GGGTTGGCTGAAGCAGAGGG+AGG + chr8.3:81392953-81392972 None:intergenic 65.0%
ACGGCGACACGCTCGCACGA+AGG + chr8.3:81392893-81392912 None:intergenic 70.0%
CGGCGACACGCTCGCACGAA+GGG + chr8.3:81392892-81392911 None:intergenic 70.0%
! GATGACGGCGGAGGTTGCGG+TGG - chr8.3:81391595-81391614 MS.gene91799:intron 70.0%
GGCGGAGGTTGCGGTGGCGA+CGG - chr8.3:81391601-81391620 MS.gene91799:intron 75.0%
! GCGGCCGTCGCCGCCATGGA+TGG + chr8.3:81391430-81391449 None:intergenic 80.0%
! TGCGGCGGCCGTCGCCGCCA+TGG + chr8.3:81391434-81391453 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 81390692 81393051 81390692 ID=MS.gene91799
chr8.3 mRNA 81390692 81393051 81390692 ID=MS.gene91799.t1;Parent=MS.gene91799
chr8.3 exon 81392883 81393051 81392883 ID=MS.gene91799.t1.exon1;Parent=MS.gene91799.t1
chr8.3 CDS 81392883 81393051 81392883 ID=cds.MS.gene91799.t1;Parent=MS.gene91799.t1
chr8.3 exon 81392032 81392372 81392032 ID=MS.gene91799.t1.exon2;Parent=MS.gene91799.t1
chr8.3 CDS 81392032 81392372 81392032 ID=cds.MS.gene91799.t1;Parent=MS.gene91799.t1
chr8.3 exon 81391668 81391747 81391668 ID=MS.gene91799.t1.exon3;Parent=MS.gene91799.t1
chr8.3 CDS 81391668 81391747 81391668 ID=cds.MS.gene91799.t1;Parent=MS.gene91799.t1
chr8.3 exon 81390692 81391022 81390692 ID=MS.gene91799.t1.exon4;Parent=MS.gene91799.t1
chr8.3 CDS 81390692 81391022 81390692 ID=cds.MS.gene91799.t1;Parent=MS.gene91799.t1
Gene Sequence

>MS.gene91799

ATGGGTGAGAAAGATGATGAATTTAGTTTGGGTTTAAGCTTGAGTTTAGGATTTGGAGAATATGCAAATAACAACAACCAAACTCCTTTGAAGGTGACTCACATGCACAAGCCTCCTCAAACGGTTACAAACCAAAGGGTTTCCTTCAATAACTTGTTCCATTTTCATGGTATGTGTTTTCTCTCTCCTAAATTTCTATGTTTCCTTTCTTCAAATTTTTTTTTTCCATTCTTTTCATTTTTAATTCCTCTTGATGCATTGTTAATTTTTTTTTTGTTTTGAAAAAACCCATTCTTGATTTCTCTTCATATTTTTTAGGGTAAATACTAGAACCCCATTTCTCATTTTTGTTTTTTTTTTTGGGTGAATGGTAAGGGGAAAAGCCCCTTCTCATCTTTGGTATAACCCTTGAATCATATAATGAAAAACATACCATTTTTTTTTTTTTATAAAAAAAACTATTTTTTACACTAAAAATAGATTTTTTAATCATAACTAAAAACCCATTTTCTTTGATGAGATGAATTCAAGTCATGAAAATGAAGAACCCATTTTAATTTACTTTCTGATTTTTTATTTATTTATGAATTAAAACGGTTTTGTTACAAAAAATAGCCTTAAATTTAGTTGATAATTACACGTTTACCACTAAAACACTCACATGCAAATCACGTGACAGATCTAAGCACAGAAACGAGGTCATTTCTCCGCGGAATAGACGGCAACACTCCACTACCATCCATGGCGGCGACGGCCGCCGCATTCGACGATGAAAACGGAGTTTCATCACCGAACAGCACCGTGTCAAGCATTAGTGGAAAGAGGAGCGAAAGAGAAGGAAACGGAGATGAAAACGACGCCGTCGAAAGGGGTTCATGTTCTCGCGGCGGCGGAAGTGATGATGATGACGGCGGAGGTTGCGGTGGCGACGGTGATTCGTCAAGGAAGAAGCTGAGGTTGTCGAAGGAACAGTCAATGTTGTTGGAAGAAACTTTCAAGGAGCATAATACTCTGAATCCGGTGAGTTTGTTGTAGTGGTATTTCTGTAATTCAGTTTTATGTTAAGGGCTTATTTGGAATTTCATTACAGGATAAAAGGCTATATTTGGAAGTGTAAATTTGGTTGTTTTGACTTGTTCTTTTTTGTTTTTATTATTGTTTTGAGGTTATTCTGAGGTTGTCTTTTTTTTTTTTTGGTTGAGTAATTAAGGTTGTCTTTCTTTATATAATCTTAAAATAATTATTTTAATTATTACTTTGATTTTGATTTTAATTATTATTATTATTATTGTTATTATTATCAGAAACAAAAGCAAGCATTGGCAAAGCAGTTGAATCTGAAGCCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGTGAGCTTTCTTCTTCTCAGGGGCATTACTGTCATTTTTGAATATTAATTTGGAATTAGTAAAATAAACATTGTTGTGATGTTGTGGCATTGTTTGTTGTGTTATGTGTGACTTTGTAAGCTTCTGTTGCATACCATACTATATACCCCACACTGTTTGGATCATATTAATTGGTTTTGTTTTTTACTAATTAAAATGTTAGCTATCACTAAAAAAAAAATTAAAATGTTAATATTACTCTTTGAAATAAATCTATGAGTGATCAATAACACAACTTAACTTTTATGAGGAGTAAAAAATTAGGCATAAAAAAAATTTGAAGTTGTATTGTAACAAGTATGTGGCAACATGAGTATGTTAGGGCCCACCTACTACATGCACAAAAGCATGTTATTATAATCTTTTGATGATGGATTGGGAAGGCAAAATTTGAAACCTTTCAATTTTAAGAGTTTACATACATTCATTAATTTCTCATGAGTTAAATTAGTTAATAGAAGAAATACTTTTAACATGTCATGTACAAACCAATGTATGTGGATTTGTTGTGTTATGTGTATGTGTTTCATGTGTGTTGTATTGTGTTCCATGCTGTTATGGAAGGAAAAAAAAATGTGACATGAGTGCTTTGGTTCAATGATGCAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAGTACTTGAAGAGATGCTGTGAGACTCTAACTGATGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCTCCACAACTCTACATGCAAATGAACCCTCCCACCACTCTTACAATGTGCCCTTCGTGCGAGCGTGTCGCCGTGTCATCTGCATCGTCCTCATCAGCAGCTGCTGCTGCTCCTCCCTCTGCTTCAGCCAACCCGTCAGGCCCAAGTGTTCAACGGCCAACACCTGTCAACCCTTGGGCGGCAATGTCTATCCAAAATCGTTCCCGACCATGA
Protein sequence

>MS.gene91799.t1

MGEKDDEFSLGLSLSLGFGEYANNNNQTPLKVTHMHKPPQTVTNQRVSFNNLFHFHDLSTETRSFLRGIDGNTPLPSMAATAAAFDDENGVSSPNSTVSSISGKRSEREGNGDENDAVERGSCSRGGGSDDDDGGGCGGDGDSSRKKLRLSKEQSMLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSAAAAAPPSASANPSGPSVQRPTPVNPWAAMSIQNRSRP