AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91877

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91877.t1 MTR_4g097950 92.140 229 15 2 2 229 26 252 9.28e-137 384
MS.gene91877.t1 MTR_5g014600 53.333 225 95 4 6 226 116 334 7.71e-66 207
MS.gene91877.t1 MTR_4g092700 54.749 179 70 4 45 222 158 326 8.68e-51 168
MS.gene91877.t1 MTR_5g014520 47.788 226 102 5 2 224 115 327 1.90e-50 167
MS.gene91877.t1 MTR_2g010450 51.397 179 77 4 45 222 177 346 3.46e-50 167
MS.gene91877.t1 MTR_0250s0040 44.560 193 96 3 37 228 80 262 2.68e-47 157
MS.gene91877.t1 MTR_0246s0020 42.975 242 115 7 3 228 142 376 1.27e-45 156
MS.gene91877.t1 MTR_4g009540 42.991 214 111 4 15 222 118 326 2.00e-43 149
MS.gene91877.t1 MTR_5g014560 44.503 191 97 3 37 227 123 304 4.19e-43 147
MS.gene91877.t1 MTR_6g047570 44.681 188 93 3 37 223 151 328 7.49e-43 147
MS.gene91877.t1 MTR_0246s0020 43.750 224 103 7 3 210 142 358 3.68e-41 144
MS.gene91877.t1 MTR_4g009540 44.444 198 99 4 15 206 118 310 6.60e-41 142
MS.gene91877.t1 MTR_4g067010 42.932 191 89 3 42 228 144 318 7.95e-41 142
MS.gene91877.t1 MTR_4g097940 44.149 188 86 4 45 228 155 327 1.60e-40 141
MS.gene91877.t1 MTR_0011s0210 45.810 179 86 3 45 222 183 351 1.75e-40 142
MS.gene91877.t1 MTR_0011s0260 46.369 179 85 3 45 222 183 351 2.57e-40 142
MS.gene91877.t1 MTR_4g066460 43.523 193 97 2 36 228 146 326 3.45e-40 140
MS.gene91877.t1 MTR_4g009110 43.575 179 93 3 45 222 174 345 7.22e-39 137
MS.gene91877.t1 MTR_2g104550 41.256 223 116 6 8 228 104 313 8.07e-39 137
MS.gene91877.t1 MTR_4g097920 41.622 185 95 3 45 228 140 312 2.08e-36 130
MS.gene91877.t1 MTR_4g097920 41.622 185 95 3 45 228 155 327 3.82e-36 130
MS.gene91877.t1 MTR_0246s0050 38.835 206 107 3 24 228 131 318 5.38e-36 129
MS.gene91877.t1 MTR_4g098035 39.320 206 106 3 24 228 152 339 8.06e-36 129
MS.gene91877.t1 MTR_8g009020 42.473 186 99 3 45 227 143 323 3.53e-35 127
MS.gene91877.t1 MTR_2g104490 44.944 178 85 5 45 221 137 302 3.62e-34 124
MS.gene91877.t1 MTR_4g066380 41.451 193 100 2 36 228 144 323 4.61e-34 124
MS.gene91877.t1 MTR_2g104560 38.830 188 94 4 46 228 55 226 1.34e-32 118
MS.gene91877.t1 MTR_2g104490 44.633 177 84 6 31 206 124 287 1.81e-32 119
MS.gene91877.t1 MTR_5g014640 36.683 199 114 1 28 226 137 323 2.54e-31 117
MS.gene91877.t1 MTR_2g104500 34.450 209 122 2 14 222 74 267 2.31e-30 114
MS.gene91877.t1 MTR_7g080780 37.705 183 96 2 45 227 152 316 1.46e-28 110
MS.gene91877.t1 MTR_2g104530 36.813 182 100 2 46 226 106 273 1.92e-28 108
MS.gene91877.t1 MTR_7g080780 37.158 183 97 1 45 227 165 329 2.14e-28 109
MS.gene91877.t1 MTR_2g104590 36.869 198 96 6 28 223 50 220 1.48e-26 102
MS.gene91877.t1 MTR_2g104650 37.500 200 112 4 25 223 78 265 1.19e-25 101
MS.gene91877.t1 MTR_8g009010 37.430 179 66 2 45 222 134 267 7.13e-25 100
MS.gene91877.t1 MTR_8g069740 37.725 167 95 3 43 208 110 268 1.51e-24 98.2
MS.gene91877.t1 MTR_5g014550 45.038 131 63 2 75 205 54 175 4.21e-24 95.5
MS.gene91877.t1 MTR_6g047550 56.322 87 38 0 26 112 154 240 1.40e-23 95.9
MS.gene91877.t1 MTR_8g064700 31.034 203 130 3 25 227 224 416 2.08e-22 94.7
MS.gene91877.t1 MTR_7g451650 34.194 155 83 4 71 225 60 195 1.07e-18 81.3
MS.gene91877.t1 MTR_4g009510 32.597 181 100 4 44 223 42 201 2.83e-18 80.1
MS.gene91877.t1 MTR_4g009420 30.588 170 90 3 56 225 54 195 3.78e-18 79.7
MS.gene91877.t1 MTR_7g050350 32.895 152 83 4 74 225 1 133 8.83e-18 77.0
MS.gene91877.t1 MTR_7g451650 32.895 152 83 4 74 225 1 133 8.83e-18 77.0
MS.gene91877.t1 MTR_8g067280 35.762 151 87 3 45 189 462 608 3.71e-16 77.4
MS.gene91877.t1 MTR_8g024790 30.159 189 109 6 30 211 276 448 1.03e-15 75.9
MS.gene91877.t1 MTR_7g117670 54.237 59 27 0 45 103 402 460 1.20e-15 75.9
MS.gene91877.t1 MTR_8g027495 55.357 56 25 0 45 100 458 513 6.45e-15 73.6
MS.gene91877.t1 MTR_7g096350 55.556 54 24 0 45 98 355 408 1.24e-14 72.8
MS.gene91877.t1 MTR_5g030430 57.407 54 23 0 45 98 493 546 3.62e-14 71.6
MS.gene91877.t1 MTR_8g024770 33.566 143 79 4 31 162 254 391 6.75e-14 70.5
MS.gene91877.t1 MTR_7g451650 35.294 136 69 4 71 206 60 176 1.34e-13 67.4
MS.gene91877.t1 MTR_1g072320 46.032 63 34 0 45 107 470 532 1.52e-13 69.7
MS.gene91877.t1 MTR_4g009420 31.655 139 68 2 68 206 65 176 4.90e-13 65.9
MS.gene91877.t1 MTR_3g030700 30.247 162 103 3 47 205 198 352 6.32e-13 67.4
MS.gene91877.t1 MTR_2g084280 28.804 184 116 4 47 229 135 304 6.90e-13 67.0
MS.gene91877.t1 MTR_3g498695 27.273 198 116 6 13 200 275 454 1.83e-12 66.2
MS.gene91877.t1 MTR_3g498695 27.273 198 116 6 13 200 275 454 1.90e-12 66.2
MS.gene91877.t1 MTR_2g081040 30.435 161 99 4 47 200 179 333 2.15e-12 65.9
MS.gene91877.t1 MTR_7g083900 27.673 159 108 3 47 200 288 444 4.69e-12 65.1
MS.gene91877.t1 MTR_7g083900 27.673 159 108 3 47 200 288 444 5.07e-12 65.1
MS.gene91877.t1 MTR_3g104100 27.950 161 103 3 47 200 197 351 6.07e-12 64.7
MS.gene91877.t1 MTR_1g080890 34.951 103 60 1 43 145 201 296 2.47e-11 62.8
MS.gene91877.t1 MTR_4g057270 26.250 160 102 4 47 202 151 298 4.57e-11 62.0
MS.gene91877.t1 MTR_1g112680 44.068 59 33 0 47 105 319 377 5.10e-11 62.0
MS.gene91877.t1 MTR_2g038040 28.022 182 114 6 46 215 53 229 5.32e-11 60.8
MS.gene91877.t1 MTR_4g131160 34.228 149 79 5 43 186 207 341 6.60e-11 61.6
MS.gene91877.t1 MTR_4g131160 34.228 149 79 5 43 186 204 338 7.35e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91877.t1 AT4G37850 47.264 201 97 4 25 225 133 324 2.85e-50 167
MS.gene91877.t1 AT4G37850 47.264 201 97 4 25 225 133 324 2.85e-50 167
MS.gene91877.t1 AT2G22750 51.087 184 85 3 45 228 126 304 1.10e-41 144
MS.gene91877.t1 AT2G22750 51.087 184 85 3 45 228 154 332 1.57e-41 144
MS.gene91877.t1 AT2G22750 51.087 184 85 3 45 228 150 328 1.86e-41 144
MS.gene91877.t1 AT2G22750 51.087 184 84 4 45 228 126 303 3.41e-40 140
MS.gene91877.t1 AT2G22750 51.087 184 84 4 45 228 154 331 5.08e-40 140
MS.gene91877.t1 AT2G22760 41.089 202 104 5 33 226 101 295 1.46e-39 138
MS.gene91877.t1 AT2G22770 37.824 193 114 2 41 227 128 320 1.75e-35 128
MS.gene91877.t1 AT2G22760 40.884 181 93 4 33 206 101 274 4.51e-34 123
MS.gene91877.t1 AT2G46510 58.929 56 23 0 45 100 395 450 2.55e-17 80.9
MS.gene91877.t1 AT5G46760 34.437 151 82 4 45 189 415 554 1.32e-16 78.6
MS.gene91877.t1 AT4G29930 29.703 202 111 6 34 209 33 229 3.85e-16 75.5
MS.gene91877.t1 AT4G29930 30.732 205 99 8 34 206 33 226 1.15e-15 74.3
MS.gene91877.t1 AT4G29930 30.732 205 99 8 34 206 33 226 1.15e-15 74.3
MS.gene91877.t1 AT1G01260 31.293 147 64 3 45 188 433 545 1.87e-15 75.1
MS.gene91877.t1 AT1G01260 31.293 147 64 3 45 188 433 545 1.87e-15 75.1
MS.gene91877.t1 AT1G01260 31.293 147 64 3 45 188 433 545 1.87e-15 75.1
MS.gene91877.t1 AT2G16910 28.249 177 114 3 47 210 316 492 3.38e-15 74.3
MS.gene91877.t1 AT1G32640 62.000 50 19 0 45 94 452 501 2.06e-14 72.4
MS.gene91877.t1 AT4G17880 32.468 154 77 3 45 189 416 551 5.20e-14 70.9
MS.gene91877.t1 AT4G29930 28.042 189 105 5 34 209 33 203 6.92e-14 68.9
MS.gene91877.t1 AT4G29930 30.000 190 97 7 34 209 33 200 7.19e-14 68.6
MS.gene91877.t1 AT5G58010 40.741 108 57 2 43 146 107 211 8.23e-14 69.7
MS.gene91877.t1 AT4G29930 29.947 187 95 7 34 206 33 197 1.76e-13 67.8
MS.gene91877.t1 AT4G16430 50.000 54 27 0 45 98 320 373 3.49e-13 68.6
MS.gene91877.t1 AT1G12860 29.167 168 106 3 47 209 269 428 8.77e-13 67.4
MS.gene91877.t1 AT1G12860 30.189 159 98 3 47 200 269 419 1.01e-12 67.0
MS.gene91877.t1 AT4G09820 27.536 138 71 2 46 183 364 472 1.78e-12 66.6
MS.gene91877.t1 AT5G57150 30.667 150 100 3 46 192 56 204 3.09e-12 63.9
MS.gene91877.t1 AT5G57150 30.667 150 100 3 46 192 56 204 3.32e-12 64.3
MS.gene91877.t1 AT5G57150 30.667 150 100 3 46 192 55 203 3.35e-12 63.9
MS.gene91877.t1 AT5G57150 27.879 165 117 2 46 209 55 218 3.55e-12 64.3
MS.gene91877.t1 AT5G57150 30.000 150 101 3 46 192 56 204 4.42e-12 64.3
MS.gene91877.t1 AT5G46830 50.000 54 27 0 45 98 343 396 1.60e-11 63.5
MS.gene91877.t1 AT2G24260 43.299 97 44 2 43 131 43 136 1.80e-11 62.4
MS.gene91877.t1 AT4G29930 32.203 118 68 2 34 141 33 148 1.89e-11 61.2
MS.gene91877.t1 AT2G28160 28.571 189 96 6 47 217 133 300 2.20e-11 62.8
MS.gene91877.t1 AT2G28160 28.571 189 96 6 47 217 133 300 2.32e-11 62.8
MS.gene91877.t1 AT4G00870 33.000 100 65 1 5 102 207 306 4.50e-11 62.4
MS.gene91877.t1 AT1G63650 26.590 173 117 4 39 202 399 570 4.56e-11 62.4
MS.gene91877.t1 AT1G63650 26.590 173 117 4 39 202 399 570 4.56e-11 62.4
MS.gene91877.t1 AT1G63650 26.590 173 117 4 39 202 399 570 4.56e-11 62.4
MS.gene91877.t1 AT2G24260 43.299 97 44 2 43 131 146 239 6.03e-11 61.6
MS.gene91877.t1 AT5G41315 27.586 174 111 3 43 202 447 619 8.11e-11 61.6
MS.gene91877.t1 AT5G41315 27.586 174 111 3 43 202 439 611 8.32e-11 61.6
MS.gene91877.t1 AT5G41315 27.586 174 111 3 43 202 444 616 8.98e-11 61.6

Find 47 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTGGTTCCTCTGCTT+TGG 0.281353 8.2:-24112388 MS.gene91877:CDS
ATATAATTGCTGAGAGAATA+AGG 0.332685 8.2:-24113221 MS.gene91877:CDS
CCTTATTCCAAACCTCAAAA+AGG 0.354140 8.2:-24113160 MS.gene91877:intron
TCCTGATTCTTTACACGTCT+TGG 0.356377 8.2:+24113300 None:intergenic
CGGGGAAGAATGTGCTGATT+AGG 0.377824 8.2:-24112500 MS.gene91877:CDS
GAACATGAGCATCCAGAAAC+TGG 0.387862 8.2:-24111481 MS.gene91877:CDS
GAAGTTAAAGCTAGTTTGTC+GGG 0.404928 8.2:-24112519 MS.gene91877:CDS
AATTTCTTCACAACCGTAAC+CGG 0.405974 8.2:+24112639 None:intergenic
AATAGAGAAACTTGGTCTCT+TGG 0.416449 8.2:-24112430 MS.gene91877:CDS
AAGGTTGGTACAACCTTCAT+TGG 0.432513 8.2:+24113360 None:intergenic
CTCTCAGCAATTATATGATC+TGG 0.438168 8.2:+24113228 None:intergenic
ATTCTTTGAGTTCACAACTT+TGG 0.438205 8.2:+24113326 None:intergenic
GACAAACTAGCTTTAACTTC+AGG 0.442233 8.2:+24112522 None:intergenic
GTCTGCGGATGTCAATGTTT+CGG 0.442533 8.2:-24112607 MS.gene91877:CDS
CAAAAGCAAAAGTGTAGAAC+CGG 0.446629 8.2:-24112658 MS.gene91877:CDS
ACCAAGACGTGTAAAGAATC+AGG 0.456019 8.2:-24113301 MS.gene91877:CDS
ATGGACAAGGCCTCAGTGTT+GGG 0.461686 8.2:-24112741 MS.gene91877:CDS
GTTTCCATTACATGAATTTG+AGG 0.464190 8.2:+24112578 None:intergenic
AAAGTATGTGAAGGAGCTTA+AGG 0.470002 8.2:-24112709 MS.gene91877:CDS
CAAAAGTGTAGAACCGGTTA+CGG 0.471591 8.2:-24112652 MS.gene91877:CDS
ACTTCCTCAAATTCATGTAA+TGG 0.472899 8.2:-24112582 MS.gene91877:CDS
GGCCATAACCATCATTGCTC+AGG 0.477071 8.2:-24112367 MS.gene91877:intron
TGTGTGATGAGTTGTAGATT+TGG 0.488926 8.2:+24113251 None:intergenic
AGCAGAGGAACCAAATGAAA+AGG 0.489144 8.2:+24112392 None:intergenic
AAAATGTACCTGAGCAATGA+TGG 0.489397 8.2:+24112359 None:intergenic
GGAACCAAATGAAAAGGAAC+TGG 0.490603 8.2:+24112398 None:intergenic
AAAGTTGTGAACTCAAAGAA+TGG 0.494937 8.2:-24113324 MS.gene91877:CDS
TGAGAAAGATAAGGCAGTGA+TGG 0.525707 8.2:-24112469 MS.gene91877:CDS
TAAGGAACAAGTAAAACTGT+TGG 0.530262 8.2:-24112691 MS.gene91877:CDS
CTGAAAGAGCTATGAACTGT+TGG 0.532934 8.2:+24113184 None:intergenic
TGAAGTTAAAGCTAGTTTGT+CGG 0.533689 8.2:-24112520 MS.gene91877:CDS
GAGAAAGATAAGGCAGTGAT+GGG 0.538793 8.2:-24112468 MS.gene91877:CDS
GGAACAAGTAAAACTGTTGG+AGG 0.550452 8.2:-24112688 MS.gene91877:CDS
TATAGAGAAATAGAGAAACT+TGG 0.574558 8.2:-24112438 MS.gene91877:CDS
TACCTGAGCAATGATGGTTA+TGG 0.585304 8.2:+24112365 None:intergenic
GATGGACAAGGCCTCAGTGT+TGG 0.588121 8.2:-24112742 MS.gene91877:CDS
GATCCTCTGTGAGAAAGATA+AGG 0.589750 8.2:-24112478 MS.gene91877:CDS
GATGGTTATGGCCAAAGCAG+AGG 0.622453 8.2:+24112377 None:intergenic
CAGGAGAGCAACAAGAAGAA+CGG 0.634139 8.2:-24113282 MS.gene91877:CDS
AAGTTAAAGCTAGTTTGTCG+GGG 0.643559 8.2:-24112518 MS.gene91877:CDS
GAAATTGTCTGAACTGTCTG+CGG 0.654800 8.2:-24112622 MS.gene91877:CDS
TGAAGGTTGTACCAACCTTG+AGG 0.663007 8.2:-24113356 MS.gene91877:CDS
CATATGTTTGTAGATGGACA+AGG 0.664887 8.2:-24112754 MS.gene91877:intron
AGAAAGATAAGGCAGTGATG+GGG 0.666003 8.2:-24112467 MS.gene91877:CDS
CTGCCTTATCTTTCTCACAG+AGG 0.691029 8.2:+24112475 None:intergenic
TGATGCTATAAAGTATGTGA+AGG 0.702262 8.2:-24112718 MS.gene91877:CDS
TATAGCATCACCCAACACTG+AGG 0.742341 8.2:+24112731 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAATTTCATATTAAAAAA+TGG - chr8.2:24113095-24113114 MS.gene91877:intron 10.0%
!! AATAAAAATTGCATTAAGAT+TGG + chr8.2:24112677-24112696 None:intergenic 15.0%
!! ATTGTTAAAAAAATGGTATA+AGG + chr8.2:24112927-24112946 None:intergenic 15.0%
!!! ATTTTTAATTAAGGACTATA+TGG - chr8.2:24112459-24112478 MS.gene91877:CDS 15.0%
!! AAGTTCAAAGTAATATTACT+CGG - chr8.2:24112842-24112861 MS.gene91877:intron 20.0%
!! ACAACACATTGTTAAAAAAA+TGG + chr8.2:24112934-24112953 None:intergenic 20.0%
!!! ATTTTTTTAACAATGTGTTG+TGG - chr8.2:24112933-24112952 MS.gene91877:intron 20.0%
! ATATAATTGCTGAGAGAATA+AGG - chr8.2:24111579-24111598 MS.gene91877:intron 25.0%
! TATAGAGAAATAGAGAAACT+TGG - chr8.2:24112362-24112381 MS.gene91877:intron 25.0%
! TTAAACATCACAAAAGTTAG+AGG - chr8.2:24113120-24113139 MS.gene91877:intron 25.0%
!! TTGAAAAATGAACCTTTTTG+AGG + chr8.2:24111655-24111674 None:intergenic 25.0%
!!! CTCAGGTACATTTTTAATTA+AGG - chr8.2:24112450-24112469 MS.gene91877:CDS 25.0%
!!! TGAAAAAGTTTTAGTTTGCA+AGG - chr8.2:24113010-24113029 MS.gene91877:intron 25.0%
!!! TTTTTATTGATGTGTTGACT+AGG - chr8.2:24112689-24112708 MS.gene91877:CDS 25.0%
AAAGTTGTGAACTCAAAGAA+TGG - chr8.2:24111476-24111495 MS.gene91877:CDS 30.0%
AAATACGCAAACATCATGAA+TGG + chr8.2:24112576-24112595 None:intergenic 30.0%
AATGTAGTGTCAAATTGACT+TGG - chr8.2:24112812-24112831 MS.gene91877:intron 30.0%
AATTGTGTCTTTATGGTGTT+TGG - chr8.2:24113279-24113298 MS.gene91877:CDS 30.0%
ACACATGATTGATTGTGATT+TGG - chr8.2:24111929-24111948 MS.gene91877:intron 30.0%
ACACTCTTAAGACATTATGT+TGG + chr8.2:24112784-24112803 None:intergenic 30.0%
ACTTCCTCAAATTCATGTAA+TGG - chr8.2:24112218-24112237 MS.gene91877:intron 30.0%
AGAGTAATATCTCATCACTA+TGG - chr8.2:24113238-24113257 MS.gene91877:CDS 30.0%
ATGGAAATCAATTTCTTAGC+GGG - chr8.2:24112726-24112745 MS.gene91877:CDS 30.0%
ATTGACCATGATACCATTAT+TGG + chr8.2:24112891-24112910 None:intergenic 30.0%
CATATACTTAGATGAGTGAA+TGG - chr8.2:24113037-24113056 MS.gene91877:intron 30.0%
GATCGATGTATTAATGCTTT+GGG - chr8.2:24113153-24113172 MS.gene91877:intron 30.0%
GATGGAAATCAATTTCTTAG+CGG - chr8.2:24112725-24112744 MS.gene91877:CDS 30.0%
GATTGATTGCGATTTATTGA+CGG - chr8.2:24111989-24112008 MS.gene91877:intron 30.0%
GTTTCCATTACATGAATTTG+AGG + chr8.2:24112225-24112244 None:intergenic 30.0%
TAAGGAACAAGTAAAACTGT+TGG - chr8.2:24112109-24112128 MS.gene91877:intron 30.0%
TCTCGTTGATGTTGTATTAA+CGG - chr8.2:24112968-24112987 MS.gene91877:intron 30.0%
TGATGCTATAAAGTATGTGA+AGG - chr8.2:24112082-24112101 MS.gene91877:intron 30.0%
TGTCATAAAATGTGTTTAGC+AGG - chr8.2:24112516-24112535 MS.gene91877:CDS 30.0%
TTGACGTAATTGTGTCTTTA+TGG - chr8.2:24113272-24113291 MS.gene91877:CDS 30.0%
! ATTCTTTGAGTTCACAACTT+TGG + chr8.2:24111477-24111496 None:intergenic 30.0%
! TGAAGTTAAAGCTAGTTTGT+CGG - chr8.2:24112280-24112299 MS.gene91877:intron 30.0%
! TGTATTAATGCTTTGGGTAA+TGG - chr8.2:24113159-24113178 MS.gene91877:intron 30.0%
! TTTTCGTAAGGATCCAATAA+TGG - chr8.2:24112875-24112894 MS.gene91877:intron 30.0%
!! GACTCGAACTATATTTTTGT+GGG - chr8.2:24111688-24111707 MS.gene91877:intron 30.0%
!! TGACTCGAACTATATTTTTG+TGG - chr8.2:24111687-24111706 MS.gene91877:intron 30.0%
!!! AAATGAACCTTTTTGAGGTT+TGG + chr8.2:24111650-24111669 None:intergenic 30.0%
!!! CTGTTTTTAATTAGCATGCA+AGG + chr8.2:24112757-24112776 None:intergenic 30.0%
!!! CTTTTTGAGGTTTGGAATAA+GGG + chr8.2:24111642-24111661 None:intergenic 30.0%
!!! GGTGTTTTTAGTTTTTCGTA+AGG - chr8.2:24112863-24112882 MS.gene91877:intron 30.0%
AAAAAAACTGAGAGTTGGAC+TGG - chr8.2:24113343-24113362 MS.gene91877:CDS 35.0%
AAAATGTACCTGAGCAATGA+TGG + chr8.2:24112444-24112463 None:intergenic 35.0%
AAAATGTGTTTAGCAGGAGA+GGG - chr8.2:24112522-24112541 MS.gene91877:CDS 35.0%
AAAGTATGTGAAGGAGCTTA+AGG - chr8.2:24112091-24112110 MS.gene91877:intron 35.0%
AACAATGTGTTGTGGTCAAT+TGG - chr8.2:24112941-24112960 MS.gene91877:intron 35.0%
AATAGAGAAACTTGGTCTCT+TGG - chr8.2:24112370-24112389 MS.gene91877:CDS 35.0%
AATTTCTTCACAACCGTAAC+CGG + chr8.2:24112164-24112183 None:intergenic 35.0%
AGGATCCAATAATGGTATCA+TGG - chr8.2:24112883-24112902 MS.gene91877:intron 35.0%
CATATGTTTGTAGATGGACA+AGG - chr8.2:24112046-24112065 MS.gene91877:intron 35.0%
CCTTATTCCAAACCTCAAAA+AGG - chr8.2:24111640-24111659 MS.gene91877:intron 35.0%
CGATCGATGTATTAATGCTT+TGG - chr8.2:24113152-24113171 MS.gene91877:intron 35.0%
CTCTCAGCAATTATATGATC+TGG + chr8.2:24111575-24111594 None:intergenic 35.0%
CTTGTCCATCTACAAACATA+TGG + chr8.2:24112048-24112067 None:intergenic 35.0%
GTACTCCATATGTTTGTAGA+TGG - chr8.2:24112040-24112059 MS.gene91877:intron 35.0%
TAAAATGTGTTTAGCAGGAG+AGG - chr8.2:24112521-24112540 MS.gene91877:CDS 35.0%
TCATGATGTTTGCGTATTTG+TGG - chr8.2:24112577-24112596 MS.gene91877:CDS 35.0%
TGTGTGATGAGTTGTAGATT+TGG + chr8.2:24111552-24111571 None:intergenic 35.0%
! AAGTTAAAGCTAGTTTGTCG+GGG - chr8.2:24112282-24112301 MS.gene91877:intron 35.0%
! AATGCCAGTTCCTTTTCATT+TGG - chr8.2:24112398-24112417 MS.gene91877:CDS 35.0%
! AATGCTTTGGGTAATGGTAA+TGG - chr8.2:24113165-24113184 MS.gene91877:CDS 35.0%
! CAAAAGCAAAAGTGTAGAAC+CGG - chr8.2:24112142-24112161 MS.gene91877:intron 35.0%
! GAAGTTAAAGCTAGTTTGTC+GGG - chr8.2:24112281-24112300 MS.gene91877:intron 35.0%
!! GACAAACTAGCTTTAACTTC+AGG + chr8.2:24112281-24112300 None:intergenic 35.0%
!!! AACTTTGGTTTTTGACCTCA+AGG + chr8.2:24111462-24111481 None:intergenic 35.0%
!!! CCTTTTTGAGGTTTGGAATA+AGG + chr8.2:24111643-24111662 None:intergenic 35.0%
!!! TCAGTTTTTTTGCCAGTTTC+TGG + chr8.2:24113334-24113353 None:intergenic 35.0%
ACCAAGACGTGTAAAGAATC+AGG - chr8.2:24111499-24111518 MS.gene91877:intron 40.0%
AGAAAGATAAGGCAGTGATG+GGG - chr8.2:24112333-24112352 MS.gene91877:intron 40.0%
AGCAGAGGAACCAAATGAAA+AGG + chr8.2:24112411-24112430 None:intergenic 40.0%
ATGAATGGATGCAATCCAAC+AGG + chr8.2:24112561-24112580 None:intergenic 40.0%
CTAGGAATACAAGTGAGAGA+TGG - chr8.2:24112707-24112726 MS.gene91877:CDS 40.0%
CTGAAAGAGCTATGAACTGT+TGG + chr8.2:24111619-24111638 None:intergenic 40.0%
CTGGCAAAAAAACTGAGAGT+TGG - chr8.2:24113338-24113357 MS.gene91877:CDS 40.0%
GAAATCAATTTCTTAGCGGG+AGG - chr8.2:24112729-24112748 MS.gene91877:CDS 40.0%
GAAATTGTCTGAACTGTCTG+CGG - chr8.2:24112178-24112197 MS.gene91877:intron 40.0%
GAGAAAGATAAGGCAGTGAT+GGG - chr8.2:24112332-24112351 MS.gene91877:intron 40.0%
GATCCTCTGTGAGAAAGATA+AGG - chr8.2:24112322-24112341 MS.gene91877:intron 40.0%
GGAACAAGTAAAACTGTTGG+AGG - chr8.2:24112112-24112131 MS.gene91877:intron 40.0%
GGAACCAAATGAAAAGGAAC+TGG + chr8.2:24112405-24112424 None:intergenic 40.0%
TACCTGAGCAATGATGGTTA+TGG + chr8.2:24112438-24112457 None:intergenic 40.0%
TAGATTGTGCGTCAGTCAAT+CGG - chr8.2:24111805-24111824 MS.gene91877:intron 40.0%
TCCTGATTCTTTACACGTCT+TGG + chr8.2:24111503-24111522 None:intergenic 40.0%
TCTTTATGGTGTTTGGCAGA+TGG - chr8.2:24113286-24113305 MS.gene91877:CDS 40.0%
TGAGAAAGATAAGGCAGTGA+TGG - chr8.2:24112331-24112350 MS.gene91877:intron 40.0%
! CAAAAGTGTAGAACCGGTTA+CGG - chr8.2:24112148-24112167 MS.gene91877:intron 40.0%
! TTCATTTGGTTCCTCTGCTT+TGG - chr8.2:24112412-24112431 MS.gene91877:CDS 40.0%
!! TTGGTTTTTGACCTCAAGGT+TGG + chr8.2:24111458-24111477 None:intergenic 40.0%
AATGGATGCAATCCAACAGG+AGG + chr8.2:24112558-24112577 None:intergenic 45.0%
ATGGATGCAATCCAACAGGA+GGG + chr8.2:24112557-24112576 None:intergenic 45.0%
CAGGAGAGCAACAAGAAGAA+CGG - chr8.2:24111518-24111537 MS.gene91877:intron 45.0%
CTGCCTTATCTTTCTCACAG+AGG + chr8.2:24112328-24112347 None:intergenic 45.0%
GAACATGAGCATCCAGAAAC+TGG - chr8.2:24113319-24113338 MS.gene91877:CDS 45.0%
GTCTGCGGATGTCAATGTTT+CGG - chr8.2:24112193-24112212 MS.gene91877:intron 45.0%
TATAGCATCACCCAACACTG+AGG + chr8.2:24112072-24112091 None:intergenic 45.0%
TGAAGGTTGTACCAACCTTG+AGG - chr8.2:24111444-24111463 MS.gene91877:CDS 45.0%
TGTTTAGCAGGAGAGGGATA+TGG - chr8.2:24112528-24112547 MS.gene91877:CDS 45.0%
! GTGAATGGACTCACACTTGA+AGG - chr8.2:24113052-24113071 MS.gene91877:intron 45.0%
!! GCTTTGGGTAATGGTAATGG+TGG - chr8.2:24113168-24113187 MS.gene91877:CDS 45.0%
!! GGGTAATGGTAATGGTGGTA+AGG - chr8.2:24113173-24113192 MS.gene91877:CDS 45.0%
!!! AAATTTTAAACTTAATATTT+TGG - chr8.2:24112625-24112644 MS.gene91877:CDS 5.0%
ATGGACAAGGCCTCAGTGTT+GGG - chr8.2:24112059-24112078 MS.gene91877:intron 50.0%
GATGGTTATGGCCAAAGCAG+AGG + chr8.2:24112426-24112445 None:intergenic 50.0%
GGATATGGATTCCCTCCTGT+TGG - chr8.2:24112543-24112562 MS.gene91877:CDS 50.0%
GGCCATAACCATCATTGCTC+AGG - chr8.2:24112433-24112452 MS.gene91877:CDS 50.0%
!! CGGGGAAGAATGTGCTGATT+AGG - chr8.2:24112300-24112319 MS.gene91877:intron 50.0%
GATGGACAAGGCCTCAGTGT+TGG - chr8.2:24112058-24112077 MS.gene91877:intron 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 24111443 24113379 24111443 ID=MS.gene91877
chr8.2 mRNA 24111443 24113379 24111443 ID=MS.gene91877.t1;Parent=MS.gene91877
chr8.2 exon 24113161 24113379 24113161 ID=MS.gene91877.t1.exon1;Parent=MS.gene91877.t1
chr8.2 CDS 24113161 24113379 24113161 ID=cds.MS.gene91877.t1;Parent=MS.gene91877.t1
chr8.2 exon 24112368 24112763 24112368 ID=MS.gene91877.t1.exon2;Parent=MS.gene91877.t1
chr8.2 CDS 24112368 24112763 24112368 ID=cds.MS.gene91877.t1;Parent=MS.gene91877.t1
chr8.2 exon 24111443 24111517 24111443 ID=MS.gene91877.t1.exon3;Parent=MS.gene91877.t1
chr8.2 CDS 24111443 24111517 24111443 ID=cds.MS.gene91877.t1;Parent=MS.gene91877.t1
Gene Sequence

>MS.gene91877

ATGAAGGTTGTACCAACCTTGAGGTCAAAAACCAAAGTTGTGAACTCAAAGAATGGACCAAGACGTGTAAAGAATCAGGAGAGCAACAAGAAGAACGGTTCATTTTCCAAATCTACAACTCATCACACACCAGATCATATAATTGCTGAGAGAATAAGGAGAGAAAAGATTAGCCAACAGTTCATAGCTCTTTCAGCCCTTATTCCAAACCTCAAAAAGGTTCATTTTTCAATTTATACACATTTGACTCGAACTATATTTTTGTGGGTATGCTAATATGATTCAATTCATATACAATTTGATTACTAAGTTTTTTTTTCTTTAAGATTTAATTTATATTCATTCATAATGTAAAGATTTTTTAGATTGTGCGTCAGTCAATCGGATCAATCATAATCGTTCGATAATTAAAAAAGTTTGACTTTTAATCTTATCATCAGAAACATTTGACTTTATTCTCGTGATTACTTCTAAAATCACGTTGACACACATGATTGATTGTGATTTGGCGTATCAAAATTAAACTACAATCACATTGACACATGTGATTGATTGCGATTTATTGACGGCGTAACAAAATTAAACTATACTAATAATGTACTCCATATGTTTGTAGATGGACAAGGCCTCAGTGTTGGGTGATGCTATAAAGTATGTGAAGGAGCTTAAGGAACAAGTAAAACTGTTGGAGGAGCAAAGCAAAAGCAAAAGTGTAGAACCGGTTACGGTTGTGAAGAAATTGTCTGAACTGTCTGCGGATGTCAATGTTTCGGACACTTCCTCAAATTCATGTAATGGAAACTCTGATGAAACATCAAAAACAAATCTGTCACTACCTGAAGTTAAAGCTAGTTTGTCGGGGAAGAATGTGCTGATTAGGATCCTCTGTGAGAAAGATAAGGCAGTGATGGGGAATGTATATAGAGAAATAGAGAAACTTGGTCTCTTGGTTATCAATGCCAGTTCCTTTTCATTTGGTTCCTCTGCTTTGGCCATAACCATCATTGCTCAGGTACATTTTTAATTAAGGACTATATGGTTATGATAATGATACTACTTTCGATAAATAAAAATGTCATAAAATGTGTTTAGCAGGAGAGGGATATGGATTCCCTCCTGTTGGATTGCATCCATTCATGATGTTTGCGTATTTGTGGTTGTTTGATCAAAATTGAACGATTCAAATTTTAAACTTAATATTTTGGATTTTACGAAAATATTTTTTTACTGTCCAATCTTAATGCAATTTTTATTGATGTGTTGACTAGGAATACAAGTGAGAGATGGAAATCAATTTCTTAGCGGGAGGAACCTTGCATGCTAATTAAAAACAGTTGACCAACATAATGTCTTAAGAGTGTTTTGTTAAAATGTAGTGTCAAATTGACTTGGTTGCTTAAAGTTCAAAGTAATATTACTCGGTGTTTTTAGTTTTTCGTAAGGATCCAATAATGGTATCATGGTCAATAGTTTGATTGAGTCCTTATACCATTTTTTTAACAATGTGTTGTGGTCAATTGGTGTGTCTCGTTGATGTTGTATTAACGGTGTTGCAAATGAATGTGAATGAAAAAGTTTTAGTTTGCAAGGAAATCATATACTTAGATGAGTGAATGGACTCACACTTGAAGGAGAGATTGTTAAGTGTGAGTAGTAATTTCATATTAAAAAATGGATTTAAACATCACAAAAGTTAGAGGACTCATATACGATCGATGTATTAATGCTTTGGGTAATGGTAATGGTGGTAAGGAGAGCAATGTCTCATCATTTGTTGTGTATATTTTTTTATAAGAGAGTAATATCTCATCACTATGGACTCAGAATAATTGACGTAATTGTGTCTTTATGGTGTTTGGCAGATGGAGAATGAATTGAACATGAGCATCCAGAAACTGGCAAAAAAACTGAGAGTTGGACTGGTGCAATTGAATTAG
Protein sequence

>MS.gene91877.t1

MKVVPTLRSKTKVVNSKNGPRRVKNQESNKKNGSFSKSTTHHTPDHIIAERIRREKISQQFIALSALIPNLKKMDKASVLGDAIKYVKELKEQVKLLEEQSKSKSVEPVTVVKKLSELSADVNVSDTSSNSCNGNSDETSKTNLSLPEVKASLSGKNVLIRILCEKDKAVMGNVYREIEKLGLLVINASSFSFGSSALAITIIAQMENELNMSIQKLAKKLRVGLVQLN