AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91878

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91878.t1 MTR_0246s0020 92.447 331 25 0 1 331 23 353 0.0 566
MS.gene91878.t1 MTR_0246s0020 92.447 331 25 0 1 331 23 353 0.0 565
MS.gene91878.t1 MTR_6g047570 54.412 340 95 7 1 331 22 310 6.65e-107 316
MS.gene91878.t1 MTR_0011s0260 56.305 341 111 9 1 331 22 334 1.14e-101 303
MS.gene91878.t1 MTR_0011s0210 55.718 341 113 9 1 331 22 334 2.06e-99 297
MS.gene91878.t1 MTR_4g067010 50.000 340 94 10 1 331 23 295 3.08e-92 278
MS.gene91878.t1 MTR_4g066460 50.000 340 102 10 1 331 23 303 6.35e-84 257
MS.gene91878.t1 MTR_0246s0050 46.821 346 117 12 1 331 2 295 1.27e-80 248
MS.gene91878.t1 MTR_4g098035 46.821 346 117 12 1 331 23 316 2.12e-80 248
MS.gene91878.t1 MTR_4g066380 48.824 340 104 8 1 331 22 300 8.93e-80 246
MS.gene91878.t1 MTR_6g047550 55.336 253 69 6 1 243 22 240 1.18e-77 239
MS.gene91878.t1 MTR_0250s0040 46.084 332 84 9 2 331 1 239 8.02e-74 229
MS.gene91878.t1 MTR_5g014520 50.000 234 90 6 99 331 101 308 2.51e-55 183
MS.gene91878.t1 MTR_5g014560 49.083 218 81 8 125 331 84 282 1.95e-50 170
MS.gene91878.t1 MTR_4g009540 50.602 166 78 3 169 331 145 309 2.82e-46 159
MS.gene91878.t1 MTR_2g010450 51.235 162 68 4 174 331 175 329 5.74e-46 159
MS.gene91878.t1 MTR_4g009540 50.602 166 78 3 169 331 145 309 6.42e-46 159
MS.gene91878.t1 MTR_5g014600 41.494 241 109 8 122 331 74 313 6.29e-43 151
MS.gene91878.t1 MTR_4g009110 40.000 245 111 5 94 331 113 328 6.76e-43 151
MS.gene91878.t1 MTR_2g104490 39.271 247 122 7 86 331 67 286 6.94e-41 145
MS.gene91878.t1 MTR_2g104490 39.271 247 122 7 86 331 67 286 9.26e-41 145
MS.gene91878.t1 MTR_8g069740 37.931 203 115 4 131 331 72 265 7.65e-40 141
MS.gene91878.t1 MTR_4g097920 47.093 172 79 6 163 331 127 289 3.31e-39 140
MS.gene91878.t1 MTR_4g097920 47.093 172 79 6 163 331 142 304 4.19e-39 141
MS.gene91878.t1 MTR_8g009020 38.272 243 109 7 100 331 89 301 4.43e-39 141
MS.gene91878.t1 MTR_4g097940 47.674 172 78 6 163 331 142 304 6.93e-39 140
MS.gene91878.t1 MTR_4g092700 46.552 174 85 4 160 331 142 309 5.14e-38 138
MS.gene91878.t1 MTR_4g097950 50.610 164 68 4 176 331 70 228 2.40e-37 134
MS.gene91878.t1 MTR_2g104550 38.710 248 125 7 86 331 68 290 3.43e-37 135
MS.gene91878.t1 MTR_5g014640 34.839 310 144 13 46 331 27 302 4.32e-37 135
MS.gene91878.t1 MTR_7g080780 31.250 304 163 7 52 331 13 294 1.02e-32 124
MS.gene91878.t1 MTR_7g080780 31.250 304 163 7 52 331 26 307 1.36e-32 124
MS.gene91878.t1 MTR_2g104560 39.429 175 86 6 165 331 41 203 2.30e-32 120
MS.gene91878.t1 MTR_2g104650 36.548 197 121 2 137 331 53 247 5.82e-29 113
MS.gene91878.t1 MTR_8g009010 33.077 260 108 7 77 331 52 250 4.41e-27 108
MS.gene91878.t1 MTR_2g104500 33.203 256 112 8 84 331 46 250 3.26e-26 105
MS.gene91878.t1 MTR_2g104530 35.484 186 103 4 147 331 83 252 6.19e-25 102
MS.gene91878.t1 MTR_5g014550 47.287 129 58 3 206 331 54 175 1.61e-24 99.0
MS.gene91878.t1 MTR_2g104590 32.353 204 100 7 139 331 26 202 1.05e-21 92.4
MS.gene91878.t1 MTR_1g072320 33.557 149 90 3 176 317 470 616 2.11e-18 86.7
MS.gene91878.t1 MTR_8g067280 35.976 164 89 4 168 317 448 609 6.07e-18 85.1
MS.gene91878.t1 MTR_7g451650 35.915 142 59 4 199 331 57 175 1.55e-16 77.4
MS.gene91878.t1 MTR_8g024790 29.730 148 88 4 176 317 291 428 1.61e-16 80.5
MS.gene91878.t1 MTR_7g451650 35.915 142 59 4 199 331 57 175 1.78e-16 77.0
MS.gene91878.t1 MTR_4g009510 37.063 143 57 5 199 331 64 183 2.28e-16 77.0
MS.gene91878.t1 MTR_7g050350 34.559 136 57 4 205 331 1 113 1.25e-14 70.5
MS.gene91878.t1 MTR_7g451650 34.559 136 57 4 205 331 1 113 1.25e-14 70.5
MS.gene91878.t1 MTR_5g030430 32.143 168 90 4 168 317 479 640 1.40e-14 75.1
MS.gene91878.t1 MTR_8g027495 48.438 64 33 0 176 239 458 521 3.81e-14 73.6
MS.gene91878.t1 MTR_7g117670 53.571 56 26 0 176 231 402 457 5.58e-14 73.2
MS.gene91878.t1 MTR_7g096350 48.529 68 29 1 168 229 341 408 1.10e-13 72.0
MS.gene91878.t1 MTR_8g064700 25.595 168 112 5 169 329 237 398 8.21e-13 69.3
MS.gene91878.t1 MTR_1g112680 25.434 173 106 3 168 317 309 481 1.47e-12 68.6
MS.gene91878.t1 MTR_8g024770 33.051 118 70 4 176 289 279 391 1.68e-12 68.2
MS.gene91878.t1 MTR_3g498695 26.452 155 109 1 161 310 283 437 4.64e-12 67.0
MS.gene91878.t1 MTR_3g498695 26.452 155 109 1 161 310 283 437 4.86e-12 67.0
MS.gene91878.t1 MTR_7g110810 46.875 64 34 0 165 228 201 264 2.37e-11 64.7
MS.gene91878.t1 MTR_3g030700 26.554 177 125 4 158 331 178 352 2.54e-11 64.3
MS.gene91878.t1 MTR_1g019240 36.538 104 63 2 131 232 49 151 3.36e-11 63.2
MS.gene91878.t1 MTR_8g098275 36.667 90 52 2 170 256 392 479 9.10e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91878.t1 AT4G37850 39.474 266 125 10 79 331 62 304 2.21e-46 160
MS.gene91878.t1 AT4G37850 39.474 266 125 10 79 331 62 304 2.21e-46 160
MS.gene91878.t1 AT2G22750 47.977 173 87 3 161 331 110 281 1.04e-39 142
MS.gene91878.t1 AT2G22750 47.977 173 87 3 161 331 110 281 1.08e-39 142
MS.gene91878.t1 AT2G22750 47.977 173 87 3 161 331 138 309 1.63e-39 142
MS.gene91878.t1 AT2G22750 47.977 173 87 3 161 331 138 309 1.81e-39 142
MS.gene91878.t1 AT2G22750 47.977 173 87 3 161 331 134 305 1.82e-39 142
MS.gene91878.t1 AT2G22760 42.690 171 91 5 164 331 107 273 8.31e-34 126
MS.gene91878.t1 AT2G22760 41.520 171 93 4 164 331 107 273 1.25e-33 125
MS.gene91878.t1 AT2G22770 32.333 300 130 11 60 331 44 298 8.54e-25 102
MS.gene91878.t1 AT4G17880 33.553 152 84 3 168 310 402 545 5.11e-16 79.3
MS.gene91878.t1 AT1G32640 33.117 154 83 4 168 310 438 582 5.64e-16 79.3
MS.gene91878.t1 AT5G46760 31.126 151 93 3 168 310 401 548 3.19e-15 77.0
MS.gene91878.t1 AT1G01260 36.066 122 51 3 170 291 427 521 3.27e-15 77.0
MS.gene91878.t1 AT1G01260 36.066 122 51 3 170 291 427 521 3.27e-15 77.0
MS.gene91878.t1 AT1G01260 36.066 122 51 3 170 291 427 521 3.27e-15 77.0
MS.gene91878.t1 AT4G16430 50.746 67 33 0 170 236 314 380 6.32e-15 75.9
MS.gene91878.t1 AT2G46510 45.946 74 34 1 168 235 381 454 1.02e-14 75.5
MS.gene91878.t1 AT1G63650 28.025 157 82 4 176 310 405 552 8.86e-14 72.4
MS.gene91878.t1 AT1G63650 28.025 157 82 4 176 310 405 552 8.86e-14 72.4
MS.gene91878.t1 AT1G63650 28.025 157 82 4 176 310 405 552 8.86e-14 72.4
MS.gene91878.t1 AT4G09820 30.000 160 73 4 167 317 352 481 3.27e-13 70.9
MS.gene91878.t1 AT5G41315 25.926 162 96 3 170 310 443 601 1.70e-12 68.6
MS.gene91878.t1 AT5G41315 25.926 162 96 3 170 310 440 598 1.74e-12 68.6
MS.gene91878.t1 AT5G41315 25.926 162 96 3 170 310 435 593 1.75e-12 68.6
MS.gene91878.t1 AT2G16910 28.049 164 95 4 177 320 315 475 2.13e-12 68.2
MS.gene91878.t1 AT4G00870 32.800 125 64 2 177 292 250 363 3.13e-12 67.4
MS.gene91878.t1 AT3G26744 28.058 139 95 1 177 310 308 446 1.48e-11 65.5
MS.gene91878.t1 AT3G26744 28.058 139 95 1 177 310 308 446 1.73e-11 65.5
MS.gene91878.t1 AT3G26744 28.058 139 95 1 177 310 308 446 1.73e-11 65.5
MS.gene91878.t1 AT3G26744 28.058 139 95 1 177 310 308 446 1.73e-11 65.5
MS.gene91878.t1 AT2G28160 28.144 167 102 5 157 318 117 270 3.08e-11 63.9
MS.gene91878.t1 AT2G28160 28.144 167 102 5 157 318 117 270 3.43e-11 63.5
MS.gene91878.t1 AT5G46830 44.444 63 35 0 176 238 343 405 7.38e-11 63.5
MS.gene91878.t1 AT5G57150 28.144 167 106 4 174 331 53 214 8.61e-11 61.2
MS.gene91878.t1 AT5G57150 28.144 167 106 4 174 331 53 214 8.99e-11 61.6
MS.gene91878.t1 AT5G57150 28.144 167 106 4 174 331 52 213 9.76e-11 61.2

Find 58 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGAATCCCCTTGTGCTTC+TGG 0.171911 8.2:+24119440 None:intergenic
GTGTTGGTAGGAGGAGAATT+TGG 0.206656 8.2:+24120274 None:intergenic
GACATGAATGTTTCTCATTT+GGG 0.281293 8.2:+24120177 None:intergenic
AGACATGAATGTTTCTCATT+TGG 0.284212 8.2:+24120176 None:intergenic
CATTAGCATCAAGGAAGTTT+AGG 0.295193 8.2:+24120554 None:intergenic
AAGTTTAGGTTGCATTCTTC+AGG 0.308908 8.2:+24120568 None:intergenic
CCAGAAGCACAAGGGGATTC+TGG 0.313026 8.2:-24119440 MS.gene91878:CDS
TGTTGGTAGGAGGAGAATTT+GGG 0.316269 8.2:+24120275 None:intergenic
TCTTGTTCCTAACCTGAAAA+AGG 0.316557 8.2:-24120002 MS.gene91878:intron
CAGGAGTGAGTCCACAAAAC+TGG 0.341350 8.2:+24120248 None:intergenic
ATAGCAGTGTCTTACCCTTT+GGG 0.356671 8.2:-24119372 MS.gene91878:CDS
GGCGTTGGCTCGAGACCTTT+TGG 0.371700 8.2:+24120093 None:intergenic
GATGATGATGGAGAAAGTTT+TGG 0.378456 8.2:+24120340 None:intergenic
AATAGCAGTGTCTTACCCTT+TGG 0.385303 8.2:-24119373 MS.gene91878:CDS
GCTTTCTTTCAGCCATGATA+TGG 0.385864 8.2:+24120065 None:intergenic
CTGAACTCAAACATTGTTGT+TGG 0.389224 8.2:+24120503 None:intergenic
CTGCAAGAGCAATGAAGCTT+TGG 0.405262 8.2:+24120026 None:intergenic
CATCATCATCAATGATACTA+TGG 0.407350 8.2:+24119572 None:intergenic
GTCTCAACTCAAAATCCTAA+AGG 0.422120 8.2:-24120157 MS.gene91878:CDS
GTTGGTGATAGTTGTGGAAT+TGG 0.425475 8.2:+24120477 None:intergenic
TGAACTCAAACATTGTTGTT+GGG 0.428381 8.2:+24120504 None:intergenic
CAGGGAAAGAGATGCTGATT+CGG 0.434047 8.2:-24119471 MS.gene91878:CDS
CAAGTGCAAGCAAAAGTGTC+AGG 0.441082 8.2:-24119490 MS.gene91878:CDS
AGGAGTGAGTCCACAAAACT+GGG 0.451243 8.2:+24120249 None:intergenic
TCTCAACTCAAAATCCTAAA+GGG 0.458505 8.2:-24120156 MS.gene91878:CDS
TCATATGATGAGAGTATTGA+AGG 0.466240 8.2:-24119532 MS.gene91878:CDS
TGTTGTTGGGTTTGTTCTTG+TGG 0.480560 8.2:+24120517 None:intergenic
TGACATTACTATCATTGCTC+AGG 0.494765 8.2:-24119341 None:intergenic
AGCAATGATAGTAATGTCAA+TGG 0.495292 8.2:+24119345 None:intergenic
TTTGACTTTGAGTTTAAGGC+AGG 0.501893 8.2:+24120229 None:intergenic
TTCAGCCATGATATGGTCAT+CGG 0.521311 8.2:+24120072 None:intergenic
CATGATATGGTCATCGGCGT+TGG 0.524246 8.2:+24120078 None:intergenic
AAACTTCCTTGATGCTAATG+AGG 0.524526 8.2:-24120551 MS.gene91878:CDS
TCATCAATGATACTATGGTC+TGG 0.549545 8.2:+24119577 None:intergenic
ACTCTTCCTCATTAGCATCA+AGG 0.553454 8.2:+24120545 None:intergenic
TGAATGTTTCTCATTTGGGG+TGG 0.558418 8.2:+24120181 None:intergenic
CAACGCCGATGACCATATCA+TGG 0.570050 8.2:-24120077 MS.gene91878:CDS
AAAGATGAGTTAGATGATGA+TGG 0.577216 8.2:+24120328 None:intergenic
TAGCAGTGTCTTACCCTTTG+GGG 0.577291 8.2:-24119371 MS.gene91878:CDS
TAAAATTTGGTAGATGGACA+AGG 0.590351 8.2:-24119713 MS.gene91878:intron
ATGTCAATGGAATCCCCAAA+GGG 0.596532 8.2:+24119358 None:intergenic
TGAAATTGAGAGACCAACCA+TGG 0.603140 8.2:-24120410 MS.gene91878:CDS
TGGTAGGAGGAGAATTTGGG+AGG 0.603292 8.2:+24120278 None:intergenic
GAATGAGTTGGTGATAGTTG+TGG 0.603767 8.2:+24120471 None:intergenic
GGGGATTCTGGTGAAAGTCA+TGG 0.606251 8.2:-24119428 MS.gene91878:CDS
GATTCACTGCCAGAAGCACA+AGG 0.606463 8.2:-24119449 MS.gene91878:CDS
TTCACTGCCAGAAGCACAAG+GGG 0.606586 8.2:-24119447 MS.gene91878:CDS
AATGTCAATGGAATCCCCAA+AGG 0.614554 8.2:+24119357 None:intergenic
TGTTTCATCAGTGAATGAGT+TGG 0.619624 8.2:+24120459 None:intergenic
ACATGAATGTTTCTCATTTG+GGG 0.622328 8.2:+24120178 None:intergenic
AAGTGCAAGCAAAAGTGTCA+GGG 0.633121 8.2:-24119489 MS.gene91878:CDS
GAAAACAAAGGTAGAGTCCG+TGG 0.640082 8.2:-24119614 MS.gene91878:CDS
GAGTGAGTCCACAAAACTGG+GGG 0.649560 8.2:+24120251 None:intergenic
TGGTTTCTTCAGAACAACCA+CGG 0.659948 8.2:+24119597 None:intergenic
GGAGTGAGTCCACAAAACTG+GGG 0.660208 8.2:+24120250 None:intergenic
ATTCACTGCCAGAAGCACAA+GGG 0.669813 8.2:-24119448 MS.gene91878:CDS
AGAACAAAACAAGAAAACAA+AGG 0.679620 8.2:-24119626 MS.gene91878:CDS
AGTGAGTCCACAAAACTGGG+GGG 0.773710 8.2:+24120252 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATACTGTTATAAAATT+TGG - chr8.2:24120208-24120227 MS.gene91878:CDS 15.0%
! AGAACAAAACAAGAAAACAA+AGG - chr8.2:24120308-24120327 MS.gene91878:CDS 25.0%
! CTGTTATAAAATTTGGTAGA+TGG - chr8.2:24120215-24120234 MS.gene91878:CDS 25.0%
AAAGATGAGTTAGATGATGA+TGG + chr8.2:24119609-24119628 None:intergenic 30.0%
ACATGAATGTTTCTCATTTG+GGG + chr8.2:24119759-24119778 None:intergenic 30.0%
AGACATGAATGTTTCTCATT+TGG + chr8.2:24119761-24119780 None:intergenic 30.0%
AGCAATGATAGTAATGTCAA+TGG + chr8.2:24120592-24120611 None:intergenic 30.0%
CAAAAACATCTCAAACCAAA+AGG - chr8.2:24119826-24119845 MS.gene91878:intron 30.0%
CATCATCATCAATGATACTA+TGG + chr8.2:24120365-24120384 None:intergenic 30.0%
GACATGAATGTTTCTCATTT+GGG + chr8.2:24119760-24119779 None:intergenic 30.0%
TAAAATTTGGTAGATGGACA+AGG - chr8.2:24120221-24120240 MS.gene91878:CDS 30.0%
TCTCAACTCAAAATCCTAAA+GGG - chr8.2:24119778-24119797 MS.gene91878:intron 30.0%
! TGAACTCAAACATTGTTGTT+GGG + chr8.2:24119433-24119452 None:intergenic 30.0%
!! TCATATGATGAGAGTATTGA+AGG - chr8.2:24120402-24120421 MS.gene91878:CDS 30.0%
!!! ACTTTTGACTCTTTTGACTT+TGG - chr8.2:24119498-24119517 MS.gene91878:CDS 30.0%
!!! CTGTTTTGACTTTGAGTTTA+AGG + chr8.2:24119712-24119731 None:intergenic 30.0%
!!! TAAAAAGCGTTTGGAAGTTT+TGG - chr8.2:24120284-24120303 MS.gene91878:CDS 30.0%
!!! TGTTGCAAAGTTTTGAGTTT+TGG + chr8.2:24119808-24119827 None:intergenic 30.0%
AAACTTCCTTGATGCTAATG+AGG - chr8.2:24119383-24119402 MS.gene91878:CDS 35.0%
AATGTGTATTAGTGTCGTGT+TGG + chr8.2:24120013-24120032 None:intergenic 35.0%
CACTTCACACTTATGTTTGA+AGG - chr8.2:24119958-24119977 MS.gene91878:intron 35.0%
CATTAGCATCAAGGAAGTTT+AGG + chr8.2:24119383-24119402 None:intergenic 35.0%
CTGAACTCAAACATTGTTGT+TGG + chr8.2:24119434-24119453 None:intergenic 35.0%
GTCTCAACTCAAAATCCTAA+AGG - chr8.2:24119777-24119796 MS.gene91878:intron 35.0%
TCATCAATGATACTATGGTC+TGG + chr8.2:24120360-24120379 None:intergenic 35.0%
TCTTGTTCCTAACCTGAAAA+AGG - chr8.2:24119932-24119951 MS.gene91878:intron 35.0%
TGACATTACTATCATTGCTC+AGG - chr8.2:24120593-24120612 MS.gene91878:CDS 35.0%
TGTTTCATCAGTGAATGAGT+TGG + chr8.2:24119478-24119497 None:intergenic 35.0%
! AACAATTGTTTTCAGCTCCA+TGG + chr8.2:24119544-24119563 None:intergenic 35.0%
! TTTGACTTTGAGTTTAAGGC+AGG + chr8.2:24119708-24119727 None:intergenic 35.0%
!! AAGTTTAGGTTGCATTCTTC+AGG + chr8.2:24119369-24119388 None:intergenic 35.0%
!! GAAAGAGCTTAAAAAGCGTT+TGG - chr8.2:24120275-24120294 MS.gene91878:CDS 35.0%
!! TGGAGAAAGTTTTGGTGAAA+TGG + chr8.2:24119589-24119608 None:intergenic 35.0%
!! TGTGAAGTGTTACCTTTTTC+AGG + chr8.2:24119947-24119966 None:intergenic 35.0%
!! TTGAGTGCTATTTAGCTAGT+GGG + chr8.2:24120143-24120162 None:intergenic 35.0%
!! TTTGAGTGCTATTTAGCTAG+TGG + chr8.2:24120144-24120163 None:intergenic 35.0%
!!! AGTGTTACCTTTTTCAGGTT+AGG + chr8.2:24119942-24119961 None:intergenic 35.0%
!!! GATGATGATGGAGAAAGTTT+TGG + chr8.2:24119597-24119616 None:intergenic 35.0%
!!! TGAGTTTTGGATAACCCTTT+AGG + chr8.2:24119795-24119814 None:intergenic 35.0%
AATAGCAGTGTCTTACCCTT+TGG - chr8.2:24120561-24120580 MS.gene91878:CDS 40.0%
AATGTCAATGGAATCCCCAA+AGG + chr8.2:24120580-24120599 None:intergenic 40.0%
ACTCTTCCTCATTAGCATCA+AGG + chr8.2:24119392-24119411 None:intergenic 40.0%
ATAGCAGTGTCTTACCCTTT+GGG - chr8.2:24120562-24120581 MS.gene91878:CDS 40.0%
ATGTCAATGGAATCCCCAAA+GGG + chr8.2:24120579-24120598 None:intergenic 40.0%
GCTTTCTTTCAGCCATGATA+TGG + chr8.2:24119872-24119891 None:intergenic 40.0%
TGAAATTGAGAGACCAACCA+TGG - chr8.2:24119524-24119543 MS.gene91878:CDS 40.0%
TGAATGTTTCTCATTTGGGG+TGG + chr8.2:24119756-24119775 None:intergenic 40.0%
TGGTTTCTTCAGAACAACCA+CGG + chr8.2:24120340-24120359 None:intergenic 40.0%
TTACTGTCGATGTTGTGTCT+TGG - chr8.2:24120082-24120101 MS.gene91878:CDS 40.0%
TTCAGCCATGATATGGTCAT+CGG + chr8.2:24119865-24119884 None:intergenic 40.0%
! ATTGTTTTCAGCTCCATGGT+TGG + chr8.2:24119540-24119559 None:intergenic 40.0%
! CACTTTTGCTTGCACTTGAA+AGG + chr8.2:24120442-24120461 None:intergenic 40.0%
! TGTTGGTAGGAGGAGAATTT+GGG + chr8.2:24119662-24119681 None:intergenic 40.0%
! TGTTGTTGGGTTTGTTCTTG+TGG + chr8.2:24119420-24119439 None:intergenic 40.0%
!! AAGTGCAAGCAAAAGTGTCA+GGG - chr8.2:24120445-24120464 MS.gene91878:CDS 40.0%
!! GAATGAGTTGGTGATAGTTG+TGG + chr8.2:24119466-24119485 None:intergenic 40.0%
!! GTTGGTGATAGTTGTGGAAT+TGG + chr8.2:24119460-24119479 None:intergenic 40.0%
!! TGAGTGCTATTTAGCTAGTG+GGG + chr8.2:24120142-24120161 None:intergenic 40.0%
AGGAGTGAGTCCACAAAACT+GGG + chr8.2:24119688-24119707 None:intergenic 45.0%
CTGCAAGAGCAATGAAGCTT+TGG + chr8.2:24119911-24119930 None:intergenic 45.0%
GAAAACAAAGGTAGAGTCCG+TGG - chr8.2:24120320-24120339 MS.gene91878:CDS 45.0%
TAGCAGTGTCTTACCCTTTG+GGG - chr8.2:24120563-24120582 MS.gene91878:CDS 45.0%
! ATTCACTGCCAGAAGCACAA+GGG - chr8.2:24120486-24120505 MS.gene91878:CDS 45.0%
! CAGGGAAAGAGATGCTGATT+CGG - chr8.2:24120463-24120482 MS.gene91878:CDS 45.0%
! GTGTTGGTAGGAGGAGAATT+TGG + chr8.2:24119663-24119682 None:intergenic 45.0%
!! CAAGTGCAAGCAAAAGTGTC+AGG - chr8.2:24120444-24120463 MS.gene91878:CDS 45.0%
AGTGAGTCCACAAAACTGGG+GGG + chr8.2:24119685-24119704 None:intergenic 50.0%
CAACGCCGATGACCATATCA+TGG - chr8.2:24119857-24119876 MS.gene91878:intron 50.0%
CAGGAGTGAGTCCACAAAAC+TGG + chr8.2:24119689-24119708 None:intergenic 50.0%
CATGATATGGTCATCGGCGT+TGG + chr8.2:24119859-24119878 None:intergenic 50.0%
GAGTGAGTCCACAAAACTGG+GGG + chr8.2:24119686-24119705 None:intergenic 50.0%
GGAGTGAGTCCACAAAACTG+GGG + chr8.2:24119687-24119706 None:intergenic 50.0%
GGGGATTCTGGTGAAAGTCA+TGG - chr8.2:24120506-24120525 MS.gene91878:CDS 50.0%
TGGTAGGAGGAGAATTTGGG+AGG + chr8.2:24119659-24119678 None:intergenic 50.0%
! GATTCACTGCCAGAAGCACA+AGG - chr8.2:24120485-24120504 MS.gene91878:CDS 50.0%
! TTCACTGCCAGAAGCACAAG+GGG - chr8.2:24120487-24120506 MS.gene91878:CDS 50.0%
CCAGAATCCCCTTGTGCTTC+TGG + chr8.2:24120497-24120516 None:intergenic 55.0%
! ACCAACACCCCCCAGTTTTG+TGG - chr8.2:24119675-24119694 MS.gene91878:CDS 55.0%
! CCAGAAGCACAAGGGGATTC+TGG - chr8.2:24120494-24120513 MS.gene91878:CDS 55.0%
! TCCACAAAACTGGGGGGTGT+TGG + chr8.2:24119679-24119698 None:intergenic 55.0%
!! CAAAACTGGGGGGTGTTGGT+AGG + chr8.2:24119675-24119694 None:intergenic 55.0%
!! AACTGGGGGGTGTTGGTAGG+AGG + chr8.2:24119672-24119691 None:intergenic 60.0%
!!! GGCGTTGGCTCGAGACCTTT+TGG + chr8.2:24119844-24119863 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 24119342 24120614 24119342 ID=MS.gene91878
chr8.2 mRNA 24119342 24120614 24119342 ID=MS.gene91878.t1;Parent=MS.gene91878
chr8.2 exon 24120003 24120614 24120003 ID=MS.gene91878.t1.exon1;Parent=MS.gene91878.t1
chr8.2 CDS 24120003 24120614 24120003 ID=cds.MS.gene91878.t1;Parent=MS.gene91878.t1
chr8.2 exon 24119342 24119722 24119342 ID=MS.gene91878.t1.exon2;Parent=MS.gene91878.t1
chr8.2 CDS 24119342 24119722 24119342 ID=cds.MS.gene91878.t1;Parent=MS.gene91878.t1
Gene Sequence

>MS.gene91878

GAAATGGATGAGTATAATTTGTTTCCTGAAGAATGCAACCTAAACTTCCTTGATGCTAATGAGGAAGAGTTTCTTCCACAAGAACAAACCCAACAACAATGTTTGAGTTCAGAGTCCAATTCCACAACTATCACCAACTCATTCACTGATGAAACAACTTTTGACTCTTTTGACTTTGGTTTTGAAATTGAGAGACCAACCATGGAGCTGAAAACAATTGTTAGTGACAACAACATCATTGAAACCATTTCACCAAAACTTTCTCCATCATCATCTAACTCATCTTTGCACTCTCAGATTTTGTCTTTTGACAACCTCCCAAATTCTCCTCCTACCAACACCCCCCAGTTTTGTGGACTCACTCCTGCCTTAAACTCAAAGTCAAAACAGAACAAAACAGTGTCAGTGTTTCCACCCCAAATGAGAAACATTCATGTCTCAACTCAAAATCCTAAAGGGTTATCCAAAACTCAAAACTTTGCAACAAAAACATCTCAAACCAAAAGGTCTCGAGCCAACGCCGATGACCATATCATGGCTGAAAGAAAGCGAAGAGAGAAACTTAGCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTGAAAAAGGTAACACTTCACACTTATGTTTGAAGGCGTGTCTCATGTTTGTCACGTATCAGTGTCCAACACGACACTAATACACATTATTACATACAATAATGTCAATTTTACGAATAATTAGTAATATTGACATGTTACTGTCGATGTTGTGTCTTGGTGTCTGTGTTAAGACAATAAATCAATTTTGATTACCCCACTAGCTAAATAGCACTCAAATCATTGTATTTTTATTTTCTTCATGAATTGTTAACATCTTCTGATCAAATACTGTTATAAAATTTGGTAGATGGACAAGGCTTCTGTATTAGCTGAGTCTATCACATACGTGAAAGAGCTTAAAAAGCGTTTGGAAGTTTTGGAAGAACAAAACAAGAAAACAAAGGTAGAGTCCGTGGTTGTTCTGAAGAAACCAGACCATAGTATCATTGATGATGATGATGATGATGATAGCTCATCATATGATGAGAGTATTGAAGGTGCTACTGATTCATCCTTTCAAGTGCAAGCAAAAGTGTCAGGGAAAGAGATGCTGATTCGGATTCACTGCCAGAAGCACAAGGGGATTCTGGTGAAAGTCATGGCTGAGATTCAAAGCATACAATTGTTTGCTGTGAATAGCAGTGTCTTACCCTTTGGGGATTCCATTGACATTACTATCATTGCTCAG
Protein sequence

>MS.gene91878.t1

EMDEYNLFPEECNLNFLDANEEEFLPQEQTQQQCLSSESNSTTITNSFTDETTFDSFDFGFEIERPTMELKTIVSDNNIIETISPKLSPSSSNSSLHSQILSFDNLPNSPPTNTPQFCGLTPALNSKSKQNKTVSVFPPQMRNIHVSTQNPKGLSKTQNFATKTSQTKRSRANADDHIMAERKRREKLSQSFIALAALVPNLKKMDKASVLAESITYVKELKKRLEVLEEQNKKTKVESVVVLKKPDHSIIDDDDDDDSSSYDESIEGATDSSFQVQAKVSGKEMLIRIHCQKHKGILVKVMAEIQSIQLFAVNSSVLPFGDSIDITIIAQ